<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:32:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619925" ref_strand="+" ref_description="SGN-E619925 [70620]">
      <seq>tttttctcaaacaatggcttcttcttccctatctaaanngagcttcattttctattgatacctttaatgtctcaaagtcatattataccaataatagagtttgcaaaattactagcccttcatagagtcaaaatctctattatcacaacacctctcaatgcccaaaaatacaaatctatagtcacacatgctctaaaatccaatctaaatatccaactaattcctattcattttccaagtcaagaatttggattgcctcaaggatgtgaaaatatggatacactcaattcactacaaatgtttaaaaatttccttttggctagtgaaatgatgcaagaaccactagagaaattgattcaagatatggaaccaaagccaagttgtatcatttctactagtcctctcacttggactcaacaagttgctaataagttcaatattccaaggtatattttccaaactgtttcttgtttcaccctttattgttctcatatgctaaatgaaacaaaaatacaagatacccttgtgttggatgatgattcattcttgatacctaatgtcccacacaagattgagttcactaaagctcaattgcctcaatctactcaagatatgaagagtcttgtggacaacatgaagaagtttcaagatttggcaagaggtactttgataaatactttttgaggagttggaaccttggtatgttgattcatacaagaacgttgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="12486" stop="13824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12786" g_stop="13524" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E619925" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12786" e_stop="13524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAAACAATGGCTTCTTCTTCTTCTTCTTCCCTATGTAAAGAGCTTCATTTTCTATTGATACCTTTAATGTCACAAAGTCATATTATACCAATAATAGACTTTGCTAAATTACTAGCCCTACATAGAGTCAAAATATCAATCATCACAACACCTCTCAATGCCCAAAAATACAAATCTATAGTCACACATGCCCTAAAATCCAATCTAAATATTCAACTAATACCTATTCATTTTCCAACCCAAGAATTTGGATTGCCTCAAGGATGTGAAAATATGGACTCACTTAATTCACTAGAAATGTTTCAAAATTTCCTTTTGGCTAGTGAAATGATGCAAGAACCACTAGAGAAATTGATTCAAGATCATATGGAACCAAAGCCAAGTTGTATCATTTCTACTAGTCCTCTCACTTGGACTCAACAACTTGCTAATAAGTTCAACATTCCTAGGTATATATTTCAAACTATTTCTTGTTTCACCCTCTATTGTTCTCATATGTTAAATGAAACAAACACACAAGACACCCTTGTGTTGGATGATGATACATTCTTGATACCTAATATACCACACAAGATTGAGTTTACAAAGGCTCAATTGCCTCAATCTACTCAAGATATGAAGAGTCTTGTTGACAAAATGAAGAAGTTTCAAGATTTGGCTAGAGGTACTTTGATTAATAC-TTTTGAGGAGTTGGAACCTTGGTATGTTGAGTCATACAAGAAAGTTGTGAAC</genome_strand>
        <mrna_strand>TTTTTCTCAAACAATGGCTTCTTCTTC--C--C-TATCTA--AANNGAGCTTCATTTTCTATTGATACCTTTAATGTCTCAAAGTCATATTATACCAATAATAGAGTTTGCAAAATTACTAGCCCTTCATAGAGTCAAAATCTCTATTATCACAACACCTCTCAATGCCCAAAAATACAAATCTATAGTCACACATGCTCTAAAATCCAATCTAAATATCCAACTAATTCCTATTCATTTTCCAAGTCAAGAATTTGGATTGCCTCAAGGATGTGAAAATATGGATACACTCAATTCACTACAAATGTTTAAAAATTTCCTTTTGGCTAGTGAAATGATGCAAGAACCACTAGAGAAATTGATTCAAG---ATATGGAACCAAAGCCAAGTTGTATCATTTCTACTAGTCCTCTCACTTGGACTCAACAAGTTGCTAATAAGTTCAATATTCCAAGGTATATTTTCCAAACTGTTTCTTGTTTCACCCTTTATTGTTCTCATATGCTAAATGAAACAAAAATACAAGATACCCTTGTGTTGGATGATGATTCATTCTTGATACCTAATGTCCCACACAAGATTGAGTTCACTAAAGCTCAATTGCCTCAATCTACTCAAGATATGAAGAGTCTTGTGGACAACATGAAGAAGTTTCAAGATTTGGCAAGAGGTACTTTGATAAATACTTTTTGAGGAGTTGGAACCTTGGTATGTTGATTCATACAAGAACGTTGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319728" ref_strand="-" ref_description="SGN-E319728 [cTOB-12-O17]">
      <seq>aaatggttaagagatgaaaattttcaagatagggttagaggaagagggatgattattagaggttgggccccacaagtcctaatattatctcatccttccgtcggaggatttttaacacactgtggatggaactcagcactagaagggatctctcgtggggtgccaaagactacttttcctatgtttgccgaacaattttacaatgagaagtttattgtaaatatcttgaagactggagttggagttggtgtttaagtgagtactacctcttggaatgaaaagaagagtggagtattggttagcaaagattaagtcaaaagagccataaatcaattaatggatcaaggattagagggttaagaaagaagaaaaatagcaaaggatttgtcacatatttcaaagaaggctatacaagaagaaggtttttcatacttggatatccaattattggtttaagatgtcatgcatgtactcaaaaataaaggggaaattgaatagatttttaaggaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="13495" stop="77358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13795" g_stop="14302" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14303" i_stop="14411" i_length="109">
            <donor d_prob="0.119" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14412" g_stop="14445" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="542" r_length="34" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E319728" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319728" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13795" e_stop="14302"/>
          <exon e_start="14412" e_stop="14445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGAGTTCTTACACAATCATTCACATTAATTTTATAATAAATTATTAAAGTTATCAATGTATTTCCACAATAGAAAATGAAGTTGTTTAGATAGGGAAGAAGCCATTGCTAATTTGAAAAAGAAAAAAAAAAACTTAAAAGTGTAGA</genome_strand>
        <mrna_strand>AAATGGTTAAGAGATGAAAATTTTCAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTTTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGGGTGCCAAAGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATTGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTTAAGTGAGTACTACCTCTTGGAATGAAAAGAAGAGTGGAGTATTGGTTAGCAAAGATTAAGTCAAAAGAGCCATAAATCAATTAATGGATCAAGGATTAGAGGGTTAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTTTTCATACTTGGATATCCAATTATTGGTTTAAGATGTCATGCATGTACTCAAAAATAAAGGGGAAATTGAATAGATTTTTAAGG.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613277" ref_strand="-" ref_description="SGN-E613277 [63049]">
      <seq>gttttacatcttcatgaggaatgatccttaagtgtgagacaagcttgcccgaaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacactcattggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgctaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggcatttgatgctccttggccagttgtccaggcaaatgcggtttatttatgcagctgcgtgctttctctctccgatgataaacacatatcatcccattactacaatcaggttttcgggatgcttgttggcaaaatgagtcgttcaacggatgcaattgttagagcaacttgttcttcagctctaggcctgttgctcaaatcatcaaatgcaagctcatggaaagacattcgacttgatcgagctgattcatcgcatagaggccatgaaccataatctgctaggagatcatgattcacaattagtacgttccaaataatactgtgtttatttctgtagagattccattctttttgtgtatattagtgctgtatagaaggtttagcttcttattatatctatgttacatagtgtccatgtttttgtaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="29170" stop="26919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28870" g_stop="28823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="0.80"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="138" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28585" g_stop="28492" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="232" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27902" g_stop="27795" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="340" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27794" i_stop="27564" i_length="231">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27563" g_stop="27371" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="533" r_length="193" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27370" i_stop="27321" i_length="50">
            <donor d_prob="0.220" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27320" g_stop="27187" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="660" r_length="127" r_score="0.828"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E613277" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613277" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28870" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28492"/>
          <exon e_start="27902" e_stop="27795"/>
          <exon e_start="27563" e_stop="27371"/>
          <exon e_start="27320" e_stop="27187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACATCTACATGAGG-ATGAT-CTT-AGTGTGAGACAAGCTTGC-CGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATGACAGGCTTGTCCACAATTAAATCAATGTTCAACAGGGGAACACACTGTATTGAGATTTCTAGCTCGCTTGACTGGCCGTAAGATGCTCAAATCAATGGGAGCTATCCCACCCTTCTTCCTTGATCTATGTGGATGATTTAGCGTTTTTTTGCTTTTAGTTCCCAATTAACTATTTATGGTATAGCTGAAAATCGCTTGACGAAACACATTTTGTAGTTTCTTCTAAATGAAAAATCTGTTCGATGAAGTGCTCTCTACAGCTTTTTCCACACTCCGAAAACAACTTGGTAAAACTTTCTGGTGTACAGGCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAGGTATTTCCACAACACTCTTTGCCTGTCTGATTTTAGTTAAAGGGGCGTTAGCAGGGTCCAGAGAAGGGCCGCACCCCAAGAGGTGTGACGTGGATAGCCTAATCCCTAATGCAACCATTAGTGGATATTTCCATGGCTCGAACTCATGACCTATAGGTTACACTAAAACAAAACAACGCTCCAAAGTCTCCCTAAATGATCTAAATCTTCTTGTGATCCGCTCTCTTCTAGGTTTTCGGGATGCTTGTTGGCAAAATGAGTCGTTCAACAGATGCAATCGTTAGAGCAACTTGTTCTTCAGCTCTAGGCTTGTTGCTCAAATCATCAAACGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCACATAGGGGCCATGAACCAGAATCTGCCAGGAGATTATGATTCACGATTAGTATAAACTTACACGCGATACTCTCAATCGCTCTGATATCGATCTACATTGTACAGATCCAAATTATAATGTGTTTATTTCTGCAAGGATTCCATTCTTTTTGTGTACATTATTAGTGCTGTATAAAAGGTTTAGCTTCTTATTATATATCTCATGTAACATAGGGCTCGTGTGTTTGTAAAGT</genome_strand>
        <mrna_strand>GTTTTACATCTTCATGAGGAATGATCCTTAAGTGTGAGACAAGCTTGCCCGA............................................................................AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACACTCATTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCTAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCTGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAG.......................................................................................................................................................................................................................................GTTTTCGGGATGCTTGTTGGCAAAATGAGTCGTTCAACGGATGCAATTGTTAGAGCAACTTGTTCTTCAGCTCTAGGCCTGTTGCTCAAATCATCAAATGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCGCATAGAGGCCATGAACCATAATCTGCTAGGAGATCATGATTCACAATTA..................................................GTAC-GTTCCAAATAATACTGTGTTTATTTCTGTAGAGATTCCATTCTTTTTGTGT--A-TATTAGTGCTGTATAGAAGGTTTAGCTTCTTA-T-TATATCT-ATGTTACATAGTGTCCATGTTTTTGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428314" ref_strand="-" ref_description="SGN-E428314 [STM-50-I19]">
      <seq>caggctcatgctgctttcccacggatggttttacatcttcatgaggatgatcttagtgtgagacaagcttgccgaaacacttgaaantccatgctccccttgatggaaattgatggaataactgctgttttcaacactcattggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgctaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggcatttgatgctccttggccagttgtccaggcaaatgcggtttatttatgcagctgcgtgctttctctctccgatgataaacacatatcatcccattactacaatcaggttttcggaatgttagttggcaaaatgagtcgttcaacggatgcaattgttagagcaacttgttcttcagctctaggcctgttgctcaaatcatcaaatgcaagctcatggaaagacattcgacttgatcgagctgattcatcgcatagaggccatgaaccataatctgctaggagatcatgattcacgattagtattaacctacacgaaaacacgatactttcaagagctctgatattgatccacattgtacagtacgttccaaataatactgtgtttatttctgtaagctaaggattccattctttttgtgtatattagtgctgtatagaaggtttagcttcttattatatctatgttgcaaaaatgtccatgtttttgaaccatttaagattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="29197" stop="26890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28897" g_stop="28823" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="161" r_length="86" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28585" g_stop="28492" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="255" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27902" g_stop="27795" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="363" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27794" i_stop="27564" i_length="231">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27563" g_stop="27223" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="716" r_length="353" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E428314" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428314" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28897" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28492"/>
          <exon e_start="27902" e_stop="27795"/>
          <exon e_start="27563" e_stop="27223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCT-CCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATGACAGGCTTGTCCACAATTAAATCAATGTTCAACAGGGGAACACACTGTATTGAGATTTCTAGCTCGCTTGACTGGCCGTAAGATGCTCAAATCAATGGGAGCTATCCCACCCTTCTTCCTTGATCTATGTGGATGATTTAGCGTTTTTTTGCTTTTAGTTCCCAATTAACTATTTATGGTATAGCTGAAAATCGCTTGACGAAACACATTTTGTAGTTTCTTCTAAATGAAAAATCTGTTCGATGAAGTGCTCTCTACAGCTTTTTCCACACTCCGAAAACAACTTGGTAAAACTTTCTGGTGTACAGGCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAGGTATTTCCACAACACTCTTTGCCTGTCTGATTTTAGTTAAAGGGGCGTTAGCAGGGTCCAGAGAAGGGCCGCACCCCAAGAGGTGTGACGTGGATAGCCTAATCCCTAATGCAACCATTAGTGGATATTTCCATGGCTCGAACTCATGACCTATAGGTTACACTAAAACAAAACAACGCTCCAAAGTCTCCCTAAATGATCTAAATCTTCTTGTGATCCGCTCTCTTCTAGGTTTTCGGGATGCTTGTTGGCAAAATGAGTCGTTCAACAGATGCAATCGTTAGAGCAACTTGTTCTTCAGCTCTAGGCTTGTTGCTCAAATCATCAAACGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCACATAGGGGCCATGAACCAGAATCTGCCAGGAGATTATGATTCACGATTAGTATAAACTTACACG------CGATACTCTCAATCGCTCTGATATCGATCTACATTGTACAG-A---TCCAAATTATAATGTGTTTATTTC--T--GC-AAGGATTCCATTCTTTTTGTGTACATTATTAGTGCTGTATAAAAGGTTTAGCTTCTTATTATAT</genome_strand>
        <mrna_strand>CAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTTCATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA............................................................................AACACTTGAAANTCCA-TGCTCCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACACTCATTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCTAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCTGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAG.......................................................................................................................................................................................................................................GTTTTCGGAATGTTAGTTGGCAAAATGAGTCGTTCAACGGATGCAATTGTTAGAGCAACTTGTTCTTCAGCTCTAGGCCTGTTGCTCAAATCATCAAATGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCGCATAGAGGCCATGAACCATAATCTGCTAGGAGATCATGATTCACGATTAGTATTAACCTACACGAAAACACGATACTTTCAAGAGCTCTGATATTGATCCACATTGTACAGTACGTTCCAAATAATACTGTGTTTATTTCTGTAAGCTAAGGATTCCATTCTTTTTGTGT--A-TATTAGTGCTGTATAGAAGGTTTAGCTTCTTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370101" ref_strand="+" ref_description="SGN-E370101 [TUS-26-H2]">
      <seq>agggatgcagttgaacctgttctcctgaacctttctatacgtcttcggaatctccaagagtgcatgaatgagaagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgaaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggcatttgatgctccttggccagttgtccaggcaaaagcggtttatttatgcagcagcgtgctttctctctccgatgataaacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30851" stop="27516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30551" g_stop="30495" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="156" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28894" g_stop="28823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="228" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28585" g_stop="28492" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="408" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27902" g_stop="27816" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="495" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E370101" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30551" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
          <exon e_start="28894" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28492"/>
          <exon e_start="27902" e_stop="27816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATGACAGGCTTGTCCACAATTAAATCAATGTTCAACAGGGGAACACACTGTATTGAGATTTCTAGCTCGCTTGACTGGCCGTAAGATGCTCAAATCAATGGGAGCTATCCCACCCTTCTTCCTTGATCTATGTGGATGATTTAGCGTTTTTTTGCTTTTAGTTCCCAATTAACTATTTATGGTATAGCTGAAAATCGCTTGACGAAACACATTTTGTAGTTTCTTCTAAATGAAAAATCTGTTCGATGAAGTGCTCTCTACAGCTTTTTCCACACTCCGAAAACAACTTGGTAAAACTTTCTGGTGTACAGGCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATA</genome_strand>
        <mrna_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA............................................................................AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAAAGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264459" ref_strand="+" ref_description="SGN-E264459 [cLEG-67-F16]">
      <seq>atgcagttgaacctgttctcctgaacctttctatacgtcttcggaatctccaagagtgcatgaatgagaagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgaaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtaaatagggacatggcatcaataataccggcatttgatgctccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30847" stop="27586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30547" g_stop="30495" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="152" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28894" g_stop="28823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="224" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="310" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28585" g_stop="28492" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.892" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27902" g_stop="27886" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="421" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E264459" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30547" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
          <exon e_start="28894" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28492"/>
          <exon e_start="27902" e_stop="27886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATGACAGGCTTGTCCACAATTAAATCAATGTTCAACAGGGGAACACACTGTATTGAGATTTCTAGCTCGCTTGACTGGCCGTAAGATGCTCAAATCAATGGGAGCTATCCCACCCTTCTTCCTTGATCTATGTGGATGATTTAGCGTTTTTTTGCTTTTAGTTCCCAATTAACTATTTATGGTATAGCTGAAAATCGCTTGACGAAACACATTTTGTAGTTTCTTCTAAATGAAAAATCTGTTCGATGAAGTGCTCTCTACAGCTTTTTCCACACTCCGAAAACAACTTGGTAAAACTTTCTGGTGTACAGGCATTTGATGCTCCTTG</genome_strand>
        <mrna_strand>ATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA............................................................................AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAAATAGGGACATGGCATCAATAATACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATGCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326806" ref_strand="+" ref_description="SGN-E326806 [cTOC-25-A1]">
      <seq>aagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgagtaagtttaatctgccagatttttttttcttatattgttcaggatggctttatgagttaactcttcaacacgccagaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcggtatgaacccattgacttgatcagtccttaatggttattcatgagtaatgatattgagttgccttcaatttttagaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggtccgtattcttttttctaatcttgcatttggagaaactttgaaggtatgcatgtctttgtattgaaatgccattaaattcagcgctatgatgaaattggtacgagaaaaaaaagttatgaatttcctaccattcaaaagtaaacgcagttcccctaagaagctggtgggtttcatagaatcatattcatactaaaatagctgtcaaattttggtgttataaaattttcaagtgcttgaatttccgaatcttcagaaagtagtagtaggcatacttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30074" stop="27911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29774" g_stop="29691" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28894" g_stop="28211" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="768" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E326806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29774" e_stop="29691"/>
          <exon e_start="28894" e_stop="28211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</genome_strand>
        <mrna_strand>AAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259041" ref_strand="+" ref_description="SGN-E259041 [cLEG-41-M9]">
      <seq>agggatgcagttgaacctgttctcctgaacctttctatacgtcttcggaatctccaagagtgcatgaatgagaagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgaaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30851" stop="28195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30551" g_stop="30495" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="156" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28894" g_stop="28823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="228" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28585" g_stop="28495" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="405" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E259041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30551" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
          <exon e_start="28894" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATA</genome_strand>
        <mrna_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA............................................................................AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479574" ref_strand="+" ref_description="SGN-E479574 [cSTD-10-D3]">
      <seq>gttattcttccgttcttgcaacacctaacgcttcaacctggggaagctgtcatggcttagcctagtacctggtgaacctagaaccacttccgtgcaccttctggctgcatttcaagcattctgtgaatgtgttggtgatctggaaatggggaagattcttgcacgagacggagagcaaaatgaaaatgagaagtggatcaaccttataagaagaatctggcaggctgtatttccataaaaagaaccaaaagaaggttccatccatttgttcgatattgagcaatgcgctggatcgatctttaagatttcaacgggaatcagctgctgcagctttgtcagagttcttgcgccacagtgatggctttggtcccctattagaacagatggtgcaagcactttgccggcatgtatcggatgattctcctactgttaggcgcctctgtctaagagggcttgtccagatgccatctatccatgttctccagtatactactcaaatcctaggggtgatattagctttgctcgatgactcagatgagtcggttcagttaaccgcagtatcatgtttgctgatggttctcgagtcctcatccagggatgcggttgaacctgttctcctgaacctttctatacggcttcggaatctccaagagtgcatgaatgagaagatacgagccactgcttatgctgcatttggagcactgagcacttatggaactgggcctcaacaagactcttttcttgagcaggctcatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="32510" stop="29387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32210" g_stop="32126" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32125" i_stop="32017" i_length="109">
            <donor d_prob="0.876" d_score="0.83"/>
            <acceptor a_prob="0.629" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32016" g_stop="31956" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="154" r_length="62" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31955" i_stop="31862" i_length="94">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31861" g_stop="31766" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="254" r_length="100" r_score="0.896"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31765" i_stop="31389" i_length="377">
            <donor d_prob="0.466" d_score="0.80"/>
            <acceptor a_prob="0.700" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31388" g_stop="31288" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="355" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31287" i_stop="31176" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31175" g_stop="31070" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="461" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31069" i_stop="30763" i_length="307">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30762" g_stop="30649" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="575" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30648" i_stop="30570" i_length="79">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30569" g_stop="30495" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="650" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.698" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="749" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E479574" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32210" e_stop="32126"/>
          <exon e_start="32016" e_stop="31956"/>
          <exon e_start="31861" e_stop="31766"/>
          <exon e_start="31388" e_stop="31288"/>
          <exon e_start="31175" e_stop="31070"/>
          <exon e_start="30762" e_stop="30649"/>
          <exon e_start="30569" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTTCCGTTCTTGCAACA-CTAACTCTTCAA-CT-GGGAAGCTGTCATGGCTTAG-CTAGTA-CTGGTGAA-CTAGAACCAC-TCCGGTAATGTGCCAGTGTACCCACTTTCATACCTGGTTATCAAAATATTTTCAGAAGAACGTTATTTGGTATAGCAATTTACAGTTACCTCACCTATTTTCTACCATCTTAGTGCA-TTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAGGTGAGGATTTTTCAGACTAGCTTCCTGGAAATCTTCTTAAATAATTTACCTTTTTAAATATGGTTTTGATGATATAATTTTCTTCTACGATCAGATTCTTGCACGAGATGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAG-AG-ATCTGGCTGGCTGTATTTCCATAAAAAG-ACCAAAAG-AGGTTGGATGATTCTGTACAAACACGCCTCCTGCTTCATTCTTTCATTATTTGATACTTCTATCTTTTTGTCTCTATCTGCTCGTACCTTTGTCAAGATTATGGACTTGAGTCGAACGACCAACTTTATTCCAAACTTGTAGAACTTGCTGAAATGATACTTACTGAAAGAGACCTTACTAAATTGATAGAACACCCATATTTCAATATTTATCTACCCTTTCTTTCCTATCTTTGTTCTCCTGTGCCATTCCTTTTTCACCCAAAAGCTCCAGAAGATTGGAATAAATTTTTTTTCTGCCAAGTGTACGTGTAGATATTTAGTTCCTTGATTAAATTTGTGTGAGAGTTAGCAAATTTCAATAGGAATATTTTCTCAGGTTCCATCCATTTGTTTGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAGGTATTTGAGACTTCTGACCTTCTCTCTGTATTATTTAGTGATTTTTTGTTGATGGTCTCAAATCATATTCATGTCTGAAGCTTCCTAAGATTGTGGATGCAACTTTTTGTAGTGATGGATTTGGTCCGCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTTTAAGAGGGCTTGTCCAGGTATTCCTGGTCATATAGTATTCTTTTCTTTTTCTTTTCTTCTAAGGAGGAGGAATGTTTACTTGAGGAATTTCCTAGTTTTTACTTTCCTGATTTTATCATTAGGAGTGCCTCTGGTTTAGTTTGATTTCCTTGGTTAAATAATATCATTGCATCATTTCGTAATTACTGCTTTAGTTATAAAACAATTCTTCCCTTTGTTTTCCCTTTCCTTTGTGGCTAGGTGCATACTAATTTCTTCTCTGAAAGAATGAGAAATTAGTAAAGTTGTGAACGCAGCCGTAATTGTTGCCTACTGGTCTTGCAGATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATGGTAAAGCTTGCTCGGTCTTTGTAAGTATCTTATAATCTACCTTCACATGAACGTTTTCTGCTGACATTCTACGGTGTAGGTTCTCGAGTCCTCATCCAGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG</genome_strand>
        <mrna_strand>GTTATTCTTCCGTTCTTGCAACACCTAACGCTTCAACCTGGGGAAGCTGTCATGGCTTAGCCTAGTACCTGGTGAACCTAGAACCACTTCCG.............................................................................................................TGCACCTTCTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAG..............................................................................................ATTCTTGCACGAGACGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAAGAATCTGGCAGGCTGTATTTCCATAAAAAGAACCAAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................GTTCCATCCATTTGTTCGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAG................................................................................................................TGATGGCTTTGGTCCCCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTCTAAGAGGGCTTGTCCAG...................................................................................................................................................................................................................................................................................................................ATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG...............................................................................GTTCTCGAGTCCTCATCCAGGGATGCGGTTGAACCTGTTCTCCTGAACCTTTCTATACGGCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCACTGCTTATGCTGCATTTGGAGCACTGAGCACTTATGGAACTGGGCCTCAACAAGACTCTTTTCTTGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428313" ref_strand="+" ref_description="SGN-E428313 [STM-50-I19]">
      <seq>gttattcttccgttcttgcaacactaacgcttcaactgggaagctgtcatggcttagctagtactggtgaactagaaccactccgtgcactactggctgcatttcaagcattctgtgaatgtgttggtgatctggaaatggggaagattcttgcacgagacggagagcaaaatgaaaatgagaagtggatcaaccttataagagatctggcaggctgtatttccataaaaagaccaaaagaggttccatccatttgttcgatattgagcaatgcgctggatcgatctttaagatttcaacgggaatcagctgctgcagctttgtcagagttcttgcgccacagtgatggctttggtcccctattagaacagatggtgcaagcactttgccggcatgtatcggatgattctcctactgttaggcgcctctgtctaagagggcttgtccagatgccatctatccatgttctccagtatactactcaaatcctaggggtgatattagctttgctcgatgactcagatgagtcggttcagttaaccgcagtatcatgtttgctgatggttctcgagtcctcatccagggatgcggttgaacctgttctcctgaacctttctatacggcttcggaatctccaagagtgcatgaatgagaagatacgagccactgcttatgctgcatttggagcactgagcacttatggaactgggcccctcacagactcttttcttgagcaggctcatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="32510" stop="29387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32210" g_stop="32126" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32125" i_stop="32017" i_length="109">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.629" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32016" g_stop="31956" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="146" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31955" i_stop="31862" i_length="94">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31861" g_stop="31766" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="242" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31765" i_stop="31389" i_length="377">
            <donor d_prob="0.466" d_score="0.98"/>
            <acceptor a_prob="0.700" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31388" g_stop="31288" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="343" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31287" i_stop="31176" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31175" g_stop="31070" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="449" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31069" i_stop="30763" i_length="307">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30762" g_stop="30649" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="563" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30648" i_stop="30570" i_length="79">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30569" g_stop="30495" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="638" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.698" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="737" r_length="99" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E428313" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32210" e_stop="32126"/>
          <exon e_start="32016" e_stop="31956"/>
          <exon e_start="31861" e_stop="31766"/>
          <exon e_start="31388" e_stop="31288"/>
          <exon e_start="31175" e_stop="31070"/>
          <exon e_start="30762" e_stop="30649"/>
          <exon e_start="30569" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTTCCGTTCTTGCAACACTAACTCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCGGTAATGTGCCAGTGTACCCACTTTCATACCTGGTTATCAAAATATTTTCAGAAGAACGTTATTTGGTATAGCAATTTACAGTTACCTCACCTATTTTCTACCATCTTAGTGCATTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAGGTGAGGATTTTTCAGACTAGCTTCCTGGAAATCTTCTTAAATAATTTACCTTTTTAAATATGGTTTTGATGATATAATTTTCTTCTACGATCAGATTCTTGCACGAGATGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCTGGCTGTATTTCCATAAAAAGACCAAAAGAGGTTGGATGATTCTGTACAAACACGCCTCCTGCTTCATTCTTTCATTATTTGATACTTCTATCTTTTTGTCTCTATCTGCTCGTACCTTTGTCAAGATTATGGACTTGAGTCGAACGACCAACTTTATTCCAAACTTGTAGAACTTGCTGAAATGATACTTACTGAAAGAGACCTTACTAAATTGATAGAACACCCATATTTCAATATTTATCTACCCTTTCTTTCCTATCTTTGTTCTCCTGTGCCATTCCTTTTTCACCCAAAAGCTCCAGAAGATTGGAATAAATTTTTTTTCTGCCAAGTGTACGTGTAGATATTTAGTTCCTTGATTAAATTTGTGTGAGAGTTAGCAAATTTCAATAGGAATATTTTCTCAGGTTCCATCCATTTGTTTGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAGGTATTTGAGACTTCTGACCTTCTCTCTGTATTATTTAGTGATTTTTTGTTGATGGTCTCAAATCATATTCATGTCTGAAGCTTCCTAAGATTGTGGATGCAACTTTTTGTAGTGATGGATTTGGTCCGCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTTTAAGAGGGCTTGTCCAGGTATTCCTGGTCATATAGTATTCTTTTCTTTTTCTTTTCTTCTAAGGAGGAGGAATGTTTACTTGAGGAATTTCCTAGTTTTTACTTTCCTGATTTTATCATTAGGAGTGCCTCTGGTTTAGTTTGATTTCCTTGGTTAAATAATATCATTGCATCATTTCGTAATTACTGCTTTAGTTATAAAACAATTCTTCCCTTTGTTTTCCCTTTCCTTTGTGGCTAGGTGCATACTAATTTCTTCTCTGAAAGAATGAGAAATTAGTAAAGTTGTGAACGCAGCCGTAATTGTTGCCTACTGGTCTTGCAGATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATGGTAAAGCTTGCTCGGTCTTTGTAAGTATCTTATAATCTACCTTCACATGAACGTTTTCTGCTGACATTCTACGGTGTAGGTTCTCGAGTCCTCATCCAGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG</genome_strand>
        <mrna_strand>GTTATTCTTCCGTTCTTGCAACACTAACGCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCG.............................................................................................................TGCACTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAG..............................................................................................ATTCTTGCACGAGACGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCAGGCTGTATTTCCATAAAAAGACCAAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................GTTCCATCCATTTGTTCGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAG................................................................................................................TGATGGCTTTGGTCCCCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTCTAAGAGGGCTTGTCCAG...................................................................................................................................................................................................................................................................................................................ATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG...............................................................................GTTCTCGAGTCCTCATCCAGGGATGCGGTTGAACCTGTTCTCCTGAACCTTTCTATACGGCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCACTGCTTATGCTGCATTTGGAGCACTGAGCACTTATGGAACTGGGCCCCTCACAGACTCTTTTCTTGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465565" ref_strand="+" ref_description="SGN-E465565 [cPRO-21-D13]">
      <seq>caacactaacgcttcaactgggaagctgtcatggcttagctagtactggtgaactagaaccactccgtgcactactggctgcatttcaagcattctgtgaatgtgttggtgatctggaaatggggaagattcttgcacgagacggagagcaaaatgaaaatgagaagtggatcaaccttataagagatctggctggctgtatttccataaaaagaccaaaagaggttccatccatttgttcgatattgagcaatgcgctggatcgatctttaagatttcaacgggaatcagctgctgcagctttgtcagagttcttgcgccacagtgatggctttggtcccctattagaacagatggtgcaagcactttgccggcatgtatcggatgattctcctactgttaggcgcctctgtctaagagggcttgtccagatgccatctatccatgttctccagtatactactcaaatcctaggggtgatattagctttgctcgatgactcagatgaatcggttcagttaaccgcagtatcatgtttgctgatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="32492" stop="30347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32192" g_stop="32126" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32125" i_stop="32017" i_length="109">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.629" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32016" g_stop="31956" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="128" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31955" i_stop="31862" i_length="94">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31861" g_stop="31766" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="224" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31765" i_stop="31389" i_length="377">
            <donor d_prob="0.466" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31388" g_stop="31288" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31287" i_stop="31176" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31175" g_stop="31070" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="431" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31069" i_stop="30763" i_length="307">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30762" g_stop="30649" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="545" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E465565" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32192" e_stop="32126"/>
          <exon e_start="32016" e_stop="31956"/>
          <exon e_start="31861" e_stop="31766"/>
          <exon e_start="31388" e_stop="31288"/>
          <exon e_start="31175" e_stop="31070"/>
          <exon e_start="30762" e_stop="30649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTAACTCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCGGTAATGTGCCAGTGTACCCACTTTCATACCTGGTTATCAAAATATTTTCAGAAGAACGTTATTTGGTATAGCAATTTACAGTTACCTCACCTATTTTCTACCATCTTAGTGCATTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAGGTGAGGATTTTTCAGACTAGCTTCCTGGAAATCTTCTTAAATAATTTACCTTTTTAAATATGGTTTTGATGATATAATTTTCTTCTACGATCAGATTCTTGCACGAGATGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCTGGCTGTATTTCCATAAAAAGACCAAAAGAGGTTGGATGATTCTGTACAAACACGCCTCCTGCTTCATTCTTTCATTATTTGATACTTCTATCTTTTTGTCTCTATCTGCTCGTACCTTTGTCAAGATTATGGACTTGAGTCGAACGACCAACTTTATTCCAAACTTGTAGAACTTGCTGAAATGATACTTACTGAAAGAGACCTTACTAAATTGATAGAACACCCATATTTCAATATTTATCTACCCTTTCTTTCCTATCTTTGTTCTCCTGTGCCATTCCTTTTTCACCCAAAAGCTCCAGAAGATTGGAATAAATTTTTTTTCTGCCAAGTGTACGTGTAGATATTTAGTTCCTTGATTAAATTTGTGTGAGAGTTAGCAAATTTCAATAGGAATATTTTCTCAGGTTCCATCCATTTGTTTGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAGGTATTTGAGACTTCTGACCTTCTCTCTGTATTATTTAGTGATTTTTTGTTGATGGTCTCAAATCATATTCATGTCTGAAGCTTCCTAAGATTGTGGATGCAACTTTTTGTAGTGATGGATTTGGTCCGCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTTTAAGAGGGCTTGTCCAGGTATTCCTGGTCATATAGTATTCTTTTCTTTTTCTTTTCTTCTAAGGAGGAGGAATGTTTACTTGAGGAATTTCCTAGTTTTTACTTTCCTGATTTTATCATTAGGAGTGCCTCTGGTTTAGTTTGATTTCCTTGGTTAAATAATATCATTGCATCATTTCGTAATTACTGCTTTAGTTATAAAACAATTCTTCCCTTTGTTTTCCCTTTCCTTTGTGGCTAGGTGCATACTAATTTCTTCTCTGAAAGAATGAGAAATTAGTAAAGTTGTGAACGCAGCCGTAATTGTTGCCTACTGGTCTTGCAGATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG</genome_strand>
        <mrna_strand>CAACACTAACGCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCG.............................................................................................................TGCACTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAG..............................................................................................ATTCTTGCACGAGACGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCTGGCTGTATTTCCATAAAAAGACCAAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................GTTCCATCCATTTGTTCGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAG................................................................................................................TGATGGCTTTGGTCCCCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTCTAAGAGGGCTTGTCCAG...................................................................................................................................................................................................................................................................................................................ATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAATCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573878" ref_strand="+" ref_description="SGN-E573878 [33257]">
      <seq>ttggactaccagaggaaaagagggtgtcttgcagctcatgagctacttttcaagtttcggatgatctgcatcagtggatactgtgcactaggctgtcgaggaacttgcactcacagagagaaaaccgaccgtgctctgcatcacaccttatctaatttgccttctgcatttgctttaccaagccgtgatgctttgcgcttgggagatcgtacaatgatgtatcttccgcgatgtgtagatacaaattccgaagttcgaaaagtttctgttcagatccttcatctatatttcagtatatctctatcgcttccaaggcctgtaaactctagtttcagcaatgacattgagttatcctatagtgctttgtcttcccttgaagatgttatatctatcctacgaagtgatgcttcaattgatccatcagaggtgtttaacagcgggttgtttcatctgtttgcatcttgctgacaaaggatgagcttgctgcaagctctgcatggttgctcaggtgctatatgtggacaagatcaagcaatcttgctgaaggtgcctatccaaagcagttaacgagtttggttatgaagcagaaggtagtgagctgactgagaccagatattgcagaaacaacacaaatcattggctctcagccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="35831" stop="34125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35531" g_stop="35369" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="35294" i_length="75">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35293" g_stop="35184" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="273" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35183" i_stop="35066" i_length="118">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35065" g_stop="34937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="402" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34936" i_stop="34707" i_length="230">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34706" g_stop="34632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="479" r_length="77" r_score="0.920"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34631" i_stop="34557" i_length="75">
            <donor d_prob="0.373" d_score="0.90"/>
            <acceptor a_prob="0.890" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34556" g_stop="34428" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="617" r_length="138" r_score="0.822"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E573878" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35531" e_stop="35369"/>
          <exon e_start="35293" e_stop="35184"/>
          <exon e_start="35065" e_stop="34937"/>
          <exon e_start="34706" e_stop="34632"/>
          <exon e_start="34556" e_stop="34428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTACCAGAGGAAAAGAGGGTGTCTTGCAGCTCATGAGCTACTTTTCAAGTTTCGGATGATCTGCATCAGTGGATACTGTGCACTAGGCTGTCGAGGAACTTGCACTCACAGAGAGAAAACCGACCGTGCTATGCATCACACCTTATCTAATTTACCTTGTAAGTGCCTTTTCTTTTGCATAGATTTTATTCTAGGTTTTTTGTACTTACCTGATACTTTTTCCTTGATACCAGCTGCATTTGCTTTACCAAGCCGCGATGCTTTGCGCTTGGGAGATCGTACAATGATGTATCTTCCACGATGTGTAGATACAAATTCTGAAGTTCGGAAAGTTTCTGTTCAGGCAAGCTTCAATACATTCTGATGAATTTAAGCTGGCTTATGTGATTGGCATGCAGAATTTCTCCCCTTCTTTTCTTCATTTCTTTGCATCTAATAAATTTTGATGGTTCTCCTGGCAGATCCTTCATCTGTATTTCAGTATATCTCTATCGCTTCCAAGGCCTGTTAACTCTAGTTTCAGCAATGACATTGAGTTATCCTATAGTGCTTTGTCTTCCCTTGAAGATGTTATATCTATCCTACGAAGTGTGAGTTTTCCTGAATGCTCCTTTTTCCCCTTTCCTTTCTTTGGAAATCTTTGCTTGCTGAAAGAATGTAAAAGGACATTCTCAAAAATAGAAAAAACAGTAAAAGGAAAGATCATTGTGATACCTTAGTATTAAACGAGGACGAGCTTTAATACCTTAGTATATCTACTTCTCTTTGCATCTTCAGTGTCTAAACCTTTTTGCTCCTGAACATGAGTTAATATTTTCAGGATGCTTCAATTGACCCATCAGAGGTGTTTAACA--GGGTTGTTTCATCCGTTTGCATCTTGCTGACAAAGGATGAGGTATTATTTAGCTTGTTATAAAATGCTGCCCAGTTACGCGTTCTCCACATCCTCATGTTATTCCACTATTTACAGCTTGCTGC-AGCTCTTCATGGTTGCTCAGGTGCTATATGT-GACAAGGTCAAGCAATCTT-CTGAAGGTG-CTATCC-AAGCAGTTAATGAGTTT-GTTATGAAG-AG-AGGTAATGAGCTGAATGAGA-CAGATATT</genome_strand>
        <mrna_strand>TTGGACTACCAGAGGAAAAGAGGGTGTCTTGCAGCTCATGAGCTACTTTTCAAGTTTCGGATGATCTGCATCAGTGGATACTGTGCACTAGGCTGTCGAGGAACTTGCACTCACAGAGAGAAAACCGACCGTGCTCTGCATCACACCTTATCTAATTTGCCTT...........................................................................CTGCATTTGCTTTACCAAGCCGTGATGCTTTGCGCTTGGGAGATCGTACAATGATGTATCTTCCGCGATGTGTAGATACAAATTCCGAAGTTCGAAAAGTTTCTGTTCAG......................................................................................................................ATCCTTCATCTATATTTCAGTATATCTCTATCGCTTCCAAGGCCTGTAAACTCTAGTTTCAGCAATGACATTGAGTTATCCTATAGTGCTTTGTCTTCCCTTGAAGATGTTATATCTATCCTACGAAGT......................................................................................................................................................................................................................................GATGCTTCAATTGATCCATCAGAGGTGTTTAACAGCGGGTTGTTTCATCTGTTTGCATCTTGCTGACAAAGGATGAG...........................................................................CTTGCTGCAAGCTCTGCATGGTTGCTCAGGTGCTATATGTGGACAAGATCAAGCAATCTTGCTGAAGGTGCCTATCCAAAGCAGTTAACGAGTTTGGTTATGAAGCAGAAGGTAGTGAGCTGACTGAGACCAGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585280" ref_strand="+" ref_description="SGN-E585280 [67738]">
      <seq>ctggtgtcctcattggcggatgattcacttattgtacgagaagcatcaatggctgctctaaaggagataactttcttaaatccacttctggttcttgattgttgcctaacagtatcaagaggtggaagacggaggtttgggaatatagctggtttgtttcaagtgatgtcagtggcaattcaagctctggataaaggagatgttgatcataattatttggcaaagttggccaaaattgccacttctgaggtgatctcaaccaaggaacttaacgctgactggcaaagagctgctgctggtgtacttgtatcaattggttcacatatgccggatctgatgatggaagaaatattcctccatctttcagggtcaaattcagctcttccagccatggttcaaattcttgcagattttgcatcatctgatgctttgcagtttactcctcacctaaagggtgtactggcacgagtggtgcccattcttggaaatgtgagggacatccaccggccaatatttgcaaatgcattcaaatgttggtgccaatcttgctggcagtgcagtgtagacttccctctgtcttcagttgtagatgctgatattcatgtctttcttgaattccgcatttgaactactattgagagtttgggcaatttcacgggatctgaaggttcgcttatcttctgtggaagcattagggcagatggttggtcttattactaggacacagctgaaggcagctttgccaagacttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="63621" stop="52201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63321" g_stop="63245" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63244" i_stop="63163" i_length="82">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63162" g_stop="63108" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="132" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63107" i_stop="63019" i_length="89">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63018" g_stop="62887" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="264" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62886" i_stop="61832" i_length="1055">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61831" g_stop="61760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="336" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61759" i_stop="59710" i_length="2050">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59709" g_stop="59619" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59618" i_stop="59525" i_length="94">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59524" g_stop="59429" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="523" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59428" i_stop="55649" i_length="3780">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55648" g_stop="55570" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="603" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55569" i_stop="55474" i_length="96">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55473" g_stop="55410" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="667" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55409" i_stop="52589" i_length="2821">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.344" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52588" g_stop="52501" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="755" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E585280" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63321" e_stop="63245"/>
          <exon e_start="63162" e_stop="63108"/>
          <exon e_start="63018" e_stop="62887"/>
          <exon e_start="61831" e_stop="61760"/>
          <exon e_start="59709" e_stop="59619"/>
          <exon e_start="59524" e_stop="59429"/>
          <exon e_start="55648" e_stop="55570"/>
          <exon e_start="55473" e_stop="55410"/>
          <exon e_start="52588" e_stop="52501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTCCTCATTGGCGGATGATTCACTTATTGTACGAGAAGCATCAATGGCTGCTCTAAAGGAGATAACTTTCTTGTATGTACATTTCCGAACTATATCTTTCCAAGTCTTTTTTTTTCTGGGTCACATTGAATTTATTTTATTCTTTTTCTTTCAGAAATCCACTTCTGGTTCTTGATTGTTGCCTAACAGTATCAAGAGGTGGAAGACGGGTACTGTTTGTTCATTACTTACATTTTTATATTGTATGTGAACAATTGGGTAGTGTAGTTTTCTTAATTGGGGATTTTATGGATTTCAGAGGTTTGGGAATATAGCTGGTTTGTTTCAAGTGATGTCAGTGGCAATTCAAGCTCTGGATAAAGGAGATGTTGATCATAATTATCTGGCAAAGTTGGCCAAAATTGCTACTTCTGAGGTGATCTCAACCAAGGTAGAGGACACTCCATTATGTTGTTCCCTCTGTTCTAATTTGTTTGTATCACTTCTCTTCCTTTTTAGTCCGTTTCAAAAAGGACACCTTTTTCCTTTTTTGTCAACTCTTTAATTCCAACTTTCCAAGCTGCATCGGTAAGAATACATGATTAAAGGATATTTTGATACATTCTACATATCTTTAATTCTTTAATTTATGATCACAAGATTCAAAAGTCCTTTTTATTTTCTTAAACTCCATGTCAAGTCAAACCAACCAAATAAATTGAGAAGCGGAGGGAGTACCAAAATTTATGCTACAATTTGATTTAACAGTTCAGGAAGGAGCTACGTCACAATGTTCACTAATCAAATGCGGATCCATCATTTTAAGTGTTTCTGTGACATGGGTGCAAAGTAGCATATCTATGTATTTTTGAAATATTGTCGACTATTTATATAGAGGTTGAGGAGAAAGCAGTGGGCAGTGGAGGGAAGCCAGAACTTCCACTAAGGTTTCAAATATATAAAGAAGTAAACAGAAGTAAACACACAAAGATTCCAAGGGGATTCAACATCTACTATATATATGTAAAAAATAATTTGAAGCATGTATACATTGTGTAATTTTTCCCCAAAGGGGATTCGGATGAACCCCCTTGCCTCCACCTGGCTCGGCGCGTGGCGGTGGGTTTGAATGAACTTGCTGTTGGACCCCTGCATCTATTTGTCATGAACTAGGAATCAACATGTAGCAGTTTAGAGTTCCGATTTAGAGTCTCATTATTGGAATATCAAAAATGTAATGTTTTGCACTTCGGTTGTTCTCTCTCGTCCGTTCCCAAGGATTGGCTTGACTTGTGATGATCATAACTACTAGTTTCCTGATTCCTTGTTGTGGATTTATCCACCATGATTCTGATTGGTGTTGGAGGCTGTTCTCTGTCGATGTTGTTTGGTGTGGGAGTTGTACTTTTTATTTCTATACAGGATGTCAAATTTACTTCTTTCATGTCCCGTGCAATGCTGGTAGTGTTCATATTACTCTTAACTGTTAGTTTGATCTCATGATAGGAACTTAACGCTGACTGGCAAAGAGCTGCAGCTGGTGTACTTGTATCAATTGGTTCACATATGCCAGATCTGGTGAGTGTTTTTTTTTCTTTTTTCTTAGAAACTAAATTTTTAGCTGAGGGAATGCTCTCTGTGCTTTCTAGTTCCTATCTTCTTTTGTTTCCTTATGAATGGATTTTAGAAGAGGGAATGTAATCTTATGAACATGTATTTTATTATTCATGTTTCTTTTTTCTACGACTATCATAATATCTATCGAAGCCATATTTTGAGAAATTAAGAGCCTTGTGGTAGAGTACTAGAGTTGATTTTGTTATAGCTTGCCAGCAGTAAGCTGAGGAATTTTCAGTCTTGACTACTATAAGGTGCTGTGGAACTCTTCAACTACTCAATGATTTTCATATTAACTCTTATTGCATTTGTGCATCAGTTCATTTAAAAATTTATAGTGTTAAAGAGAGGTTTTATCAGATTCTTTTTAGATCTGCAACTTAGCATATCATTTTCCGACCTGGTTCTTTGTATTGAGCCAAACCTGTGAAAAAGTATGTGCTGACAGATGGTGGTGAAACAAGAATTTAGTACCTCTATGCAATTTAATACTCGGGGAGTCGTGAAACCACTGCATCTAAAGGTTTATCTGTTAGCGACGGGACACTTTTATTTATTTATTTATCTGTTTTTGCGACATGACGGTGCCTGATTGGGTATAAACCGGCATACATGAGATTATAGAATGTATATTTCCTTAAGGTTTTGGTAGGATGTTTTGGAAGAGAGTTTGGAAGGGAATTAGTGGGTTGGGGGATGAATTTCTACAACATACTAAATTAGAGGGTTAGAAATGGGACTGGATAATGTTTTAAACAAATTTTTGGATTGGAGAAGAAAACTTATTTTGAAGGGAATTGAAGTCATTTAAATAGAGTTTAGAACAACTCTAACGAAAATGGATCTCACTATTATAGTTGGATGGAAACAGGAATGGGATGAACCAATCTAACTGAAAATGAGCAGAAGTGTATAACATGGACAGCTACAGGCATTCCACGAACCTCTTTAGCATTTTGGGACTCAGTTGGATCATGCACTGGTCGACTCTTGATTTACTGCGCTGCTAGTACAAAATAGGGCTGGGGAAAGTCTCTGTCAAAGTTTGGAATTATACTCCTGCGATTATATGGTGGTCCATATGGAATGGAAGTAGTGCAAGAATTTTTGAGGATAGAAAAGAACCCTTAATTTCCTTTTGGGGCTGCATAGCTTCAGTTAATGATGTAGTAGTCATAATAAAAAATAAAATAAAATGATTTTGAAGCCATGGTCGTTAAAGTTATCATTCTCAAAAAAAAAACAAGAAAAAAAAACAAGCCATGGTCGTTTCAACATGTGAAGTAGCTGCTCTGTATTTACTTTCCAGCAATAGTCTTGATGCTGGAAATCAACAATAAGGCTCTTTACTTGATTAGAAAACCAGCTTTCCATGAACCTGAATGGGGGAAGTTGGTTTGTGCTGATAAGTAGCTGATGACTATTGCTGTAGCGACTCCACAAAAAGTGGCTTTATTTGACAGTTGAACTAGTTTGCTCTTAAAGTGATACTATGGGTTGACTTTGACTAGATGTTAATGAATGGGGAGGCTGTGACCATACTAAAAATTCATCAGCAGAACTGTTTTTCAATTCACACATCTCATACAGTCTGAAAATCCTAAATCTATCAGCGTCGTTAATGCGTTGGAGTTTTGCTTGTTGTTCCTTTATGATCTTTAGAACATTGAACAGCTTTACAATCGATGAGATCAGATGAAATTCTTTTCCAGCTGGTGCATTATGAATTTTCTTTCTAGCTGGTGCATTACCTTGGCAATCTATCATAGTTTGTACATTCTGTCGTAATCCTTAATGTTTATCTCAGAGGAAATGCTTCTTTTTGTTAAACTTATTCGTCTCACCCAGAGAAGTACAAAAAAGCAGATTGTCACCTTCTTTTGTGCTATGTTTACTTCTGTGGCACAGTTTTCTGACAAATAATTGTTTGTCTTTACCCTTTCTTTATTCTTGTTTTTTGATATTCTGAACTTTTTTTGTTCTAGTTTAATTCTTCGATTGTCTGTGGCAGATGATGGAAGAAATATTCCTCCATCTTTCAGGGTCAAATTCAGCTCTTCCAGCCATGGTTCAAATTCTTGCAGATTTTGCATCAGCTGATGGTTAGTTTTTTATTTGCTTGCAAATACTTTTGTGAGTCACTTTTAACATTATGACCCAATTCACTTATCTGATCTACATCTATGATATTTGAAGCTTTGCAGTTTACTCCTCACCTAAAGGGTATACTGGCACGAGTAGTGCCCATTCTTGGAAATGTGAGGGACATCCACCGGCCAATTTTTGCAAATGGTAATAGATCCCAAAACTTTATATGCTCCAACATTTCATGAAAAGCTTTCTCTTGCTTTAAATTAGCATGTCATTCTCCTAAAAGAAGAAGTAGGAGCATTTGCTATTGGAAGCTGTGACTTCTGAATATTCCAGCCGGTTAGGATCTTATATTTTTGTTAAGAAGCTGGTAAAATTTGCTTAGTTGGTGATTCCTGAAGAGATGTAACAGTATGGGCTGATGAGGGTACCAAGGGGAGGGAGAAAGAGTTGTCTTCTCTCTACACGTTCTCCTAATTGCAATTGTCTGAGATTCTTATAGCTATGAGATAACACCTATGTGCTTTGAGGAGGTGAAGCCTATGAAGGAGTGAGACAATGGGGAATAGCAACGGGGAAAGGGCATCAAACTGGAGTTTAATATGGCTCTTGATGAAGGAAGGTTAGTTGCAAAAGGGGATAACAACTATCTCTTTAATCTGATGGCACATAAAACTTATGAGCTATCAAGAGGATCAGGGAGTTCTTTTTGGTTTCTTTTGATTTTAGTAAGAGGAGACTACCAAATTTAGGAGGGTGCGAGCGAGGAAAATTTATAGAAAATTGTTCTCTTGTAGGAATAAGTGACATGTGAAGCCAACATTAAGGAGAGTTTTCTTGGGAATTGCTCTGTTGAAGTTTACTGATGAATGACCCGCTATGACGCCTTTGGCTAAAACGATTTGCACAAGCACCGTAGTATCCCTCTCCTGCTATAGCGCCACCTTGGCTGCTATAGCGGGAGTGCGTAAATATAGCCTCTTAGCTGCTCCAAGACCAGACAATTCTTATTGCGTGCACTCCTAAAATGATTCCATGGTTTCTGAATCCACGCTTCTGAATATGCAGGTTAACAATGGATAGAATCGAGGGCCTAAACTACCCCTCCGAGAAATTTCTCGATTTTGCGAGCCATGAGTGGTACAAGGAGATATGGCGGGTAGGCTTCTGTTTAGAGAGGGCTATTAAGATGAAGGGAATGGCTGAATAAGCTTTCACCTTCTACAACCGGATTCAAAAGTTTGGTTGGGTCCCTTGGTGGTAACTCTTCTTTTTTAAAATACAGGTGGTGTTGGAGTTATATGCTCATCTGGTCCTATGGGATTCCCCCAATCCCACCATCTGTTTCCAAGGGGTAGACATCTCTTTGAATGCCCAGTTCGTAAATTTAGCACCGAGTGCCGAAGGTTCCTCATGATCCCTACCTGGCCAAGCTGAGGGAGACGAATATGGCATAGTTGTGGAATACAGTGGTGGAAGAGAGAGATACTGGGAAGAGGTCGATTGGTTCACCACAGATGGCCGTACCAGCCACTACTATTTGCGTGATGCTCGGAGGTGGTTGATAATAGTTGGTTGGAGAATTTGCCCATCGGGGAACCTTATCGATGCGACCTATTCCCGGGCCGTCGTGGTAGGCTGCATCATAGTTGGGATCTCGATGAAAGTGGAGGGATCAAATTGTGGTAGAGGGGAAAGATTTCTACTGCGGCAGCAAGAACTCTCCTTTCCTTCATGGCTCAGTGTCTGTACTATGAAGGCAAGCATGGGTTCCCTTAGATGACACGAACTATGAGGTTGAACATGATGCGCATTCAACCCCTTACGGGTGAGGAAGGAACCTTTCCGAGCGCCTAAGAAGAGGAAGATGGACGAGGGGAAACCTTCCTCTTCTTAGGCGCTGAGGAAGGCTCTTTCCTCTCCAGTAAGGGGTTGAACGCTTAGTCATTCTCCACCTCATAATTTGTGTCATCTAAGGGCACTACTACTTGCATGCATAGTACATACACTAGGCCAAGAAGGAACGGGGACTTTTTGCTGCCGTGGTATAAATCCATTCACATTGCCATGATCATCTCACCCATATACACGGGGATCCCACCTATGATGTAGACTACCACCAAGGCTCGAGGATAGGTCATATAGGTAAGGTTACCCGATGGGTGAACCCTTTGGCCAATTAGTGTTAACCATCTCCAGCCTTCAGGTGAATAGTAGTGGTTGATAAGGCCCTTTGAAGTGAACCGACTCACCTCTTCCCAGTATTTCTCTTCCACTAGTGTATTCCGCAGCCATGTCATGTCAGTCTCCCTCAGCTTGGCTGTGTGGGGCTCATGATGAATCTTTGACATTCCCAATACTAAATTCACAAACCGTGCATCCATAGGGATGTCCACCCCTCGAATGTAGACGGTAAGTTGGGGGAATCCCATTGGACCGTAACTAGATGAGCATAGAACTCCAACACCCACCTGCACTGTGAAAAAGGAGGAGTTACCAACAAGGGACCCCAACCGAACTCTTGAATTCAGCTGTAGAAGGCGGGAGCCTATTCAGCCACTCACCTCATATTAAAGTCCCTCTCTAGACAAAAGCCCATTCGTCGCATCTCCTTGTACTGCTCATGGCTCACAGCATTGAGAAATCTCTCATAGGTGTAGTCTGGTCCCTTAATTCTGTCCTTGTTAACATGTATATTTGGAAGCATGTGTTAGAAAAACATATAATCATCCTAGGAGTGCATGCAATGATAAAAATATGGTCTTGGAGCAACTAGCGGAAGGTGCCATAGTGGGTGGTTGCCCGCTATAGCAACACCCGCTGTAGAGAAATTATTGGTCGCTATATTGGCCTTCATCTTCCAGAACTCTAGGGGGTTTTCCATGGCGCCCCTTGGCCCAAAAATCTGTTTTCGACAAGTTTTTCTACAGGTCAGTGTTCCTTAAGTGCTCTTCTACTTCAATATGCAAAATCTAGTCATTTCGAGTCCTAAATCACTCCCGAATCTAAGTTTTTCATCAAGAACGCGCCTTCAACTTCCCCACCATTTCAGACCTGTTTTTCGCCCTATTTTTTGTGATCCTCACGCCCAGAACGTTGTAGTAGCGTTGTTAACATAAGGGGAAACCCCATGCTTCGGTAAGTTTGACAATCAAGCAATTACTTTAAGAAACCAAAACCTATTCTACTCTGCTCAATTCGTAGCATGCAATCGTTTTTAAGCATAAATGAAGTAAGGAGAGAAGAGTACACATATTTACCTTAATTTCGTCGCTTTCAGACACACTGTCTGGGAGGAATCTGAGAGAGGTTTAAGAGTTGGAAGAGGGAGAAATGGACATGAGAACCCATTCCTCTCCTTTTTCTTGATCCGCATCGAGCCGCTATAGCGGCAATAGTGCTGCTATAAAGGGGTCCAGTAATATGTGCGGGGAAACTTTTTTAGTAGATTTGTGTGTTCCAATTTCCTATTCCGGTATGCTTGGGTACGTGGGACGTGGTAGCATTATCACTTGCGTAGGAGAGTACATTCTTGACATGTGAAATCGCGTGGTAAACCTCGATAACCGGTTTGTCTTCTTTCCGTCCGGGTAGTCGTGTGGGGACGAATGAGGGATAAAGTGGTATCTATTGTAACAACCTGATCTGTCAATACATCTACGCCACTTCGCTTCCATTCTAAGAATTATTTACTCACCAAGCAAGTGGAAAGTAATGGCACAGTGTTGTTGAAACCACCCCTAATTTTCTTCTGAATAAAAGCAATGAGAATTTTTCTTTCACACATTTGAAATTCTGGTAGAAGTGAACCTTCTATTCATTGCAAAGTTATATCATCAGTGCACATGATTGGTTAAGAGTGATACAAATCACGAAGTCGTTTATTCATGAGAAAAGTTGTTCTAGTAGTTTATGTTACACTTCATGCTCAAGTGTTTTCTTTGTTTTCATTGAAAGGACTTATGTTTTTATTTTTTCCAGCATTCAAATGTTGGTGCCAATCTTGCTGGCAGTGCAGTGTAGACTTCCCTCTGTCTTCAGTTGTAGATGCTGATA-TCATGTGAGACCAATTTGCTGCTTCTGTTTAGTTCTGATTTTCTTCCAAGGATTTTCATTTTAGTTGTTCATGGTGAATATGAGTGCGTCAACTGTGCAGGTCTTTCTTGAATTCCGCATTTGAACTATTATTGAGAGTTTGGGCAATTTCACGGGATCTGAAGGTATGCCTATTTTGCTCTTTTTAGAACTATTTTAAGATGTCATCTTTATATGTAAACTGTCTTCATCCATATTTTTATTTTTTCATTTCTATTTTTCTTACGAGTCTACCTATGTTCCCTCGTGAATGGTTATCAAGTTTTATGATCAACTTGCTTCCATTGGAGAGTACCTTTGACGAGGTCAATTTCTTTTGTTTAAGGAAAACTACATGAATTCTTTGCTGAATCTCCCGTTAGATATAGTTATATACACGAGTTTAGAAACAATGTCCCCAGAATTTATCAAAAACCTCTGTGCTAACTTTTTGCAAGTATCAACCAAAAAAAAAATCAATGACAATGTTACTTCAGTAAAAGTAAATGTTGTCTCATAGTTCCACCTTTCCCTTCCAAATTGTAACATGGTAGCCCGCATGACACGAGTAATGTTATTGAAGGGAGAAAGGTCTCATTGAGGTATTATAGCAGTTTTAGAAGGGCAAGAATGCTAGAGAAGAGGGAAGGAGGACCAATGTGAAGATTGCTTAGAAAGATTGGGGGAGAAGGGACAGTGTAGAGTTGTCAACCATGAAGAAGGGACAATGTAGAGTTGTCAACCATGGAGAAGGGACCGTGGAAATTTTTCAAGCTTTGGAGGCGTACATAAGAGAAACGGACAACAAAATGAGTTGTTTTTCAATAACCTCAATGGAGGAGAGGACATACTAGAAATGGAGCAAATCAAGAATGGAAAGTTCTCTGTCAACTCAGAATACAAGGAGCTGAATTCAGGAGTAGTGAAGGATGAAGATTGGTCTTGGAAACCAAACATTCGTTACAAAGTTAATTGTTTCACCTGGTTTTTGGCAAAAGAGGCAGTCTTGACCTATGTTGCTCAGACTCTTTCAAATTGTTGACGGGTGTGTGTCGGATCCTCTAAAATAGTGTATTTTTGAAGGATCCGACATGAGTGTGGCATCATTTTTGGAGAGTCCGAGCAACTTAGGTCTTGACACAGGAAAACCCAAGCAAAAAGGGTCATCAATTAGTCTCGGGGCAAGTTCTATGCGGGGAACAAACTGTGACAATCAACCATCTATTTTTGCATTGCTAGTGGACAGACCAACTATGGAGGATGTTTATATGCCTAAAAGGAATCAGATGGGTGAAATCTGGAAACATAGCAGGTGTCCTGAGATGCTGGAACAAGGATGGCATGGTAAGTAAGAAGGAGGAGAGATGGAAGATTGTCCCGGCTTGTATATGGTGGTCAGTCTGGATTGAGAGAAACAAGAGGTGTTTTGTAGGAGTACAAAGCAACTTACAAGTTCTTATGATGAATTGCTTAGGCCTATTTTATTTTTGGTGTGAGTAAAAACTATTAGCTCAAACACAAGACGTTTTTGATGTTTTAGAATTTTTGTAAGGATAACGTGAACCACAAGATGTAAGTTACTTTTGTTGGGGAACTATACCTGTTGGTGTAGTATACCTGTGGATATATAGAAGTAATGGTACCTTTATAAAAAAAAAGAAGAGAATGACTCGGTGGATAAGCTCTCGTGTCAGGTAATTCTTAGGGGTTTCCATGAGGGTTTTGAGGATAAAATCATAAAGTTGATTACAAACATTAAGCATAGAGCTAGGACAGCAAGCGCGGTGATGGTAAGAGGGACGGTACGAGAGAGTAGGTGGAAGATAATGAGAACACCGTGGTGTATGAAATAAAATAAGAGGAATGAGGGAGAAAGAGGGTGAAGTAAGGGGGAGAATGGGTGAAGGGCGTTGGTGCTGATAATATAATTAAGTAAATAAAAGTATGCTCTCTCTAACAACTTAATCTTTTAGATGAGATGGTCACACACTTCAACATGGTATCAAGGACAAATGTCTTTGGATCAAATCTCACCTCCACCTATTATCAAAAAGTGTTTGGCCATGAAAAAATGGATCAGGCTGGCATGTGAGGGAGAGTGCTGAAAATATAATTAAGTAAATACAATTATGTTCTCTCTACCGACTTAAACTTAAAGATGAGATGGTCACACAATCCAGCAATTGTGAAGGGCATATACATTATTCCTGGGTGTCGGGATCTTTTTCTGGTAAGGTAATATAACAAGTTGACTTATGAGTGGCCAATTTCACCTAGTGCTGTAGACTCACGGGACAAAGTTCAGAGGCCATGAGGTATTGGAGGTGGTTTGCCTGATGTTAGTCTAAGCTTTCATTTGTCCTTCCACATTTCCATGGCTTGGAATTTTTTTTTGGGAAAATAAGTGGGTTTCTTACTTATTTTCTTGGGTTCAGTACGTAAGCGAAAAATATTATCCTAAAAGCATTTGTATATGATCTAGACAAATACTACGGGAGGTAAGGGTGAGAGTGAGAGGGTAGGGATGTAGGGTGGTGGGGACGAGGGCTATGGGGGTGGGGTAAAGATGAAATGTATTGGATGGTGGAGAGTACCCAATCGATGTGGAACGCCACTTGTGGAACTTGTTTTCCTATCAGTAGGGAGGTAATTTTCTCACTTTTAAGGAACTTGTTTCTCTAAAGAAAATGTATGCCGATATTTTGACCAAATGAACATGGAGAAGTTGGAAAATGTTTTCCTCCATACTGATCACAGCCTTGATGTAAGATCACATTCGAACTAGTTGATTTGATGATTGATAAGGGTGCTTTGAATCAACTCATAATTTATAGATATTTTCACCTATTAGTATGTTGAATAGATTACAAACCTTTTGTTTTCTTTCTGTTCTATTTCATCTGTTGCTCATTTTGAATAGGCAGGGGGAGAGGAAGTTTTGTTTCCTGACATGCTATTTCTTCTCAGGTTCGCTTATCTTCTGTGGAAGCATTAGGGCAGATGGTTGGTCTTATTACTAGGACACAGCTGAAGGCAGCTTTGCCAAGACTTATTC</genome_strand>
        <mrna_strand>CTGGTGTCCTCATTGGCGGATGATTCACTTATTGTACGAGAAGCATCAATGGCTGCTCTAAAGGAGATAACTTTCTT..................................................................................AAATCCACTTCTGGTTCTTGATTGTTGCCTAACAGTATCAAGAGGTGGAAGACGG.........................................................................................AGGTTTGGGAATATAGCTGGTTTGTTTCAAGTGATGTCAGTGGCAATTCAAGCTCTGGATAAAGGAGATGTTGATCATAATTATTTGGCAAAGTTGGCCAAAATTGCCACTTCTGAGGTGATCTCAACCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTAACGCTGACTGGCAAAGAGCTGCTGCTGGTGTACTTGTATCAATTGGTTCACATATGCCGGATCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAAGAAATATTCCTCCATCTTTCAGGGTCAAATTCAGCTCTTCCAGCCATGGTTCAAATTCTTGCAGATTTTGCATCATCTGATG..............................................................................................CTTTGCAGTTTACTCCTCACCTAAAGGGTGTACTGGCACGAGTGGTGCCCATTCTTGGAAATGTGAGGGACATCCACCGGCCAATATTTGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAAATGTTGGTGCCAATCTTGCTGGCAGTGCAGTGTAGACTTCCCTCTGTCTTCAGTTGTAGATGCTGATATTCAT................................................................................................GTCTTTCTTGAATTCCGCATTTGAACTACTATTGAGAGTTTGGGCAATTTCACGGGATCTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTATCTTCTGTGGAAGCATTAGGGCAGATGGTTGGTCTTATTACTAGGACACAGCTGAAGGCAGCTTTGCCAAGACTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470206" ref_strand="+" ref_description="SGN-E470206 [cSTB-17-G2]">
      <seq>tgatggtgaattttcaggtggttatatgcatggtgaggggacatatattggacctgataaagtgatctataggggacgctggcggtttaaccttaaacatggtttaggatatcaaatgtatcccaatgggaatatttttgaagggtcctggatgcagggaacccctgaaggaccaggtaagtatacatgggctaatgggaatgtctactttggaaacatgaaaggagggaaaatatcagggaaaggaactctcacttggattaacggagattcatatgaagggaactggttaaatggtgcaatgcatggcgtcggtatgtatacatggagtgatggtagctgttatattggtacatggacacatagtctaaaggatggaaaaggaacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="80790" stop="81782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81090" g_stop="81482" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E470206" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81090" e_stop="81482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTGAATTTTCAGGTGGTTATATGCATGGTGAGGGGACATATATTGGACCTGATAAAGTGATCTACAGGGGACGCTGGCGGTTTAACCTTAAACATGGTTTAGGATATCAAATGTATCCCAATGGGGATATTTTTGAAGGGTCCTGGATGCAAGGAACCCCTGAAGGACCGGGTAAGTATACATGGGATAACGGGAATGTCTACTTTGGAAACATGAAAGGAGGGAAAATATCAGGGAAAGGAACTCTCACTTGGATTAACGGAGATTCGTATGAAGGGAGCTGGTTAAATTGTGCAATGCATGGCGTCGGTATGTATACATGGAGTGATGGTAGCTGTTATATTGGTACATGGACACATAGTCTAAAGGATGGAAAAGGAACATTTTA</genome_strand>
        <mrna_strand>TGATGGTGAATTTTCAGGTGGTTATATGCATGGTGAGGGGACATATATTGGACCTGATAAAGTGATCTATAGGGGACGCTGGCGGTTTAACCTTAAACATGGTTTAGGATATCAAATGTATCCCAATGGGAATATTTTTGAAGGGTCCTGGATGCAGGGAACCCCTGAAGGACCAGGTAAGTATACATGGGCTAATGGGAATGTCTACTTTGGAAACATGAAAGGAGGGAAAATATCAGGGAAAGGAACTCTCACTTGGATTAACGGAGATTCATATGAAGGGAACTGGTTAAATGGTGCAATGCATGGCGTCGGTATGTATACATGGAGTGATGGTAGCTGTTATATTGGTACATGGACACATAGTCTAAAGGATGGAAAAGGAACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475162" ref_strand="+" ref_description="SGN-E475162 [cSTB-39-M18]">
      <seq>gaattttcaggtggttatatgcatggtgaggggacatatattggacctgataaagtgatctataggggacgctggcggtttaaccttaaacatggtttaggatatcaaatgtatcccaatgggaatatttttgaagggtcctggatgcagggaacccctgaaggaccaggtaagtatacatgggctaatgggaatgtctactttggaaacatgaaaggagggaaaatatcanggaaaggaactctcacttggattaacggagattcatatgaagggaactggttaaatggtgcaatgcatggcgtcggtatgtatacatggagtgatggtagctgttatattggtacatggacacatagtctaaaggatggaaaaggaacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="80797" stop="81782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81097" g_stop="81482" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E475162" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81097" e_stop="81482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTCAGGTGGTTATATGCATGGTGAGGGGACATATATTGGACCTGATAAAGTGATCTACAGGGGACGCTGGCGGTTTAACCTTAAACATGGTTTAGGATATCAAATGTATCCCAATGGGGATATTTTTGAAGGGTCCTGGATGCAAGGAACCCCTGAAGGACCGGGTAAGTATACATGGGATAACGGGAATGTCTACTTTGGAAACATGAAAGGAGGGAAAATATCAGGGAAAGGAACTCTCACTTGGATTAACGGAGATTCGTATGAAGGGAGCTGGTTAAATTGTGCAATGCATGGCGTCGGTATGTATACATGGAGTGATGGTAGCTGTTATATTGGTACATGGACACATAGTCTAAAGGATGGAAAAGGAACATTTTA</genome_strand>
        <mrna_strand>GAATTTTCAGGTGGTTATATGCATGGTGAGGGGACATATATTGGACCTGATAAAGTGATCTATAGGGGACGCTGGCGGTTTAACCTTAAACATGGTTTAGGATATCAAATGTATCCCAATGGGAATATTTTTGAAGGGTCCTGGATGCAGGGAACCCCTGAAGGACCAGGTAAGTATACATGGGCTAATGGGAATGTCTACTTTGGAAACATGAAAGGAGGGAAAATATCANGGAAAGGAACTCTCACTTGGATTAACGGAGATTCATATGAAGGGAACTGGTTAAATGGTGCAATGCATGGCGTCGGTATGTATACATGGAGTGATGGTAGCTGTTATATTGGTACATGGACACATAGTCTAAAGGATGGAAAAGGAACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273082" ref_strand="+" ref_description="SGN-E273082 [cLEM-24-C21]">
      <seq>cgacctacatttgtttttctggaaagacgatggagtcttgaaggagccattgagaaagttattggtcataatccacatggagacatggaggatgctatgagtgctccaattttggaaagagagtacatgcaaggcatcctaatcagtgaggttgtcttaaatgagcgtttttcaccaccatctgggagagccagaaggaggcaaaagagatttgtaagggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81373" stop="83666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81673" g_stop="81971" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83366" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="449" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E273082" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81673" e_stop="81971"/>
          <exon e_start="83217" e_stop="83366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCTACAAATGTTTCTCTGGAAAGACGATGGAGTCTTGAAGTAGCCATTGAGAAAGTTATTGGTCATAATTTAGATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTA</genome_strand>
        <mrna_strand>CGACCTACATTTGTTTTTCTGGAAAGACGATGGAGTCTTGAAGGAGCCATTGAGAAAGTTATTGGTCATAATCCACATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374947" ref_strand="+" ref_description="SGN-E374947 [TUS-15-I17]">
      <seq>ttaaatgagcgtttttcaccaccatctgggagagccagaaggaggcaaaagagatttgtaagggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggattaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgntttgtacggagttgagaatccaccgaagatttgatcttaaaggtttctcactaggacgatctgctgataaggttgaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81529" stop="86509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81829" g_stop="81971" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="311" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="477" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="588" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86209" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="698" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E374947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81829" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGA</genome_strand>
        <mrna_strand>TTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATTAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGNTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTTCTCACTAGGACGATCTGCTGATAAGGTTGAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204591" ref_strand="+" ref_description="SGN-E204591 [cLEC-14-C11]">
      <seq>ttaaatgagcgtttttcaccaccatctgggagagccagaaggaggcaaaagagatttgtaagggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaagttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggattaaaccttccagtggacaaaaattccgctttgtagtaatgggaaatatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81529" stop="86429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81829" g_stop="81971" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="311" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="477" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="588" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86129" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="618" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E204591" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81829" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTT</genome_strand>
        <mrna_strand>TTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATTAAACCTTCCAGTGGACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332181" ref_strand="+" ref_description="SGN-E332181 [cTOD-16-D14]">
      <seq>gggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctaaagccttcttggcgcgaagctttattaaagcagatcgaaattgacagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81590" stop="87559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81890" g_stop="81971" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="250" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="416" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="527" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="715" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87237" g_stop="87259" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="738" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E332181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81890" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAAT</genome_strand>
        <mrna_strand>GGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAAAGCCTTCTTGGCGCGAAGCTTTATTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332060" ref_strand="+" ref_description="SGN-E332060 [cTOD-16-E15]">
      <seq>gggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81590" stop="86578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81890" g_stop="81971" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="250" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="416" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="527" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86278" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="706" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E332060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81890" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGC</genome_strand>
        <mrna_strand>GGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468848" ref_strand="+" ref_description="SGN-E468848 [cSTB-6-M8]">
      <seq>ggagttatgatttaatgctaagtctgcagcttgggatcagataccacctgtggggaaaattaccaccctataccatagacgagatataccgaaattcagattttggtccgcgtgcctagcttttggatgtattttccaaaaggaggatctcagttgacacctaccacaccagtctgaagattttaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgtttaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacggaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatacgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatctgaaaggttcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81632" stop="86479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81932" g_stop="81971" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="0.95"/>
            <acceptor a_prob="0.869" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="216" r_length="176" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="382" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="493" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86179" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="573" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E468848" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81932" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATA-CA-CTGTGGGGAAAATTA-CA-CCTATA-CAAAGACGAGATATA-CGAACTTCAGATTTTGGTCCACGTGC-TAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTA-CACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACT</genome_strand>
        <mrna_strand>GGAGTTATGATTTAATGCTAAGTCTGCAGCTTGGGATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCACCTGTGGGGAAAATTACCACCCTATACCATAGACGAGATATACCGAAATTCAGATTTTGGTCCGCGTGCCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACCACACCAGTCTGAAGATTTTAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTTAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGGAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATACGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTGAAAGGTTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244633" ref_strand="+" ref_description="SGN-E244633 [cLED-38-N22]">
      <seq>tgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81647" stop="85527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81947" g_stop="81971" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="0.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="193" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="359" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85227" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="437" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E244633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81947" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGA</genome_strand>
        <mrna_strand>TGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738300" ref_strand="+" ref_description="SGN-E738300 [LC13AF08]">
      <seq>cggtatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="83719" stop="88959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84018" g_stop="84185" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="279" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="467" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="625" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87927" g_stop="88086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="785" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88529" g_stop="88659" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="916" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E738300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84018" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88086"/>
          <exon e_start="88529" e_stop="88659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAAT</genome_strand>
        <mrna_strand>CGGTATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439034" ref_strand="+" ref_description="SGN-E439034 [cSTA-10-N3]">
      <seq>aggaatctgagggagatgtttaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaggatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatccgctgacaaggttgaaattgatgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaagcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="83718" stop="87647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84018" g_stop="84185" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="279" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="467" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87237" g_stop="87347" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="578" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E439034" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84018" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTG</genome_strand>
        <mrna_strand>AGGAATCTGAGGGAGATGTTTAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAGGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCCGCTGACAAGGTTGAAATTGATGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204075" ref_strand="+" ref_description="SGN-E204075 [cLEC-27-G11]">
      <seq>tgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttacagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaacagttttgctgcggatgcttgcgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgcacggagttgagaatccaccgaagatttgatcttaaaggttcttcactatgacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="83734" stop="86562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84034" g_stop="84185" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.680" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="264" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86100" g_stop="86262" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="427" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E204075" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84034" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAA-GGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGC</genome_strand>
        <mrna_strand>TGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTACAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTGCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGCACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTATGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348675" ref_strand="+" ref_description="SGN-E348675 [cTOF-30-L5]">
      <seq>cctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtggtcgttggtgggtccgcatgtcagaggcagccgattacgagcgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="83805" stop="88337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84105" g_stop="84185" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="192" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="380" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="538" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87927" g_stop="88037" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="651" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E348675" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84105" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGT-GTCGTT-GTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCAT</genome_strand>
        <mrna_strand>CCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGGTCGTTGGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278021" ref_strand="+" ref_description="SGN-E278021 [cLER-4-L21]">
      <seq>tgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="83833" stop="87674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84133" g_stop="84185" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="164" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="352" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87237" g_stop="87374" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="490" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E278021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84133" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACT</genome_strand>
        <mrna_strand>TGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707654" ref_strand="+" ref_description="SGN-E707654 [FA33CE01]">
      <seq>cgataatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="84898" stop="89061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85197" g_stop="85260" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="252" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="410" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87927" g_stop="88086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="570" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88529" g_stop="88761" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="803" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E707654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85197" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88086"/>
          <exon e_start="88529" e_stop="88761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGG</genome_strand>
        <mrna_strand>CGATAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707873" ref_strand="+" ref_description="SGN-E707873 [FA34AH03]">
      <seq>cagatatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctngtagcggttaccatggcagagacacacagctgctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="84899" stop="89159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85198" g_stop="85260" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="252" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="410" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87927" g_stop="88086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="570" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88529" g_stop="88859" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="901" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E707873" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85198" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88086"/>
          <exon e_start="88529" e_stop="88859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGA-ATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTT</genome_strand>
        <mrna_strand>CAGATATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTNGTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402802" ref_strand="+" ref_description="SGN-E402802 [PPC-8-D2]">
      <seq>gagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgacaaggttgaaattgatgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaagcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgcagtggacgtaccacggcagatggattagaaattgttgcagaagaagagtctctggaggatgaaatatcaccccagggccttgttttggtcccacgtggaagtgaggatagtgtcgttgtgggtcctcatgtcagaggcagccgattacgagcgtcatcagctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="84898" stop="88346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85198" g_stop="85260" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="251" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="409" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87927" g_stop="88046" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="529" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E402802" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85198" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCG</genome_strand>
        <mrna_strand>GAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGACAAGGTTGAAATTGATGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGCAGTGGACGTACCACGGCAGATGGATTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCACCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGAGGATAGTGTCGTTGTGGGTCCTCATGTCAGAGGCAGCCGATTACGAGCGTCATCAGCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465391" ref_strand="+" ref_description="SGN-E465391 [cPRO-21-A7]">
      <seq>catcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatctgaaaggttcttcactaggacgatctgctgacaaggttgaaattgatgagaacactatacttaaggatctagatttgaattactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcatgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="84909" stop="87651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85209" g_stop="85260" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="240" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87237" g_stop="87351" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="355" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E465391" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85209" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGT</genome_strand>
        <mrna_strand>CATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTGAAAGGTTCTTCACTAGGACGATCTGCTGACAAGGTTGAAATTGATGAGAACACTATACTTAAGGATCTAGATTTGAATTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCATGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708414" ref_strand="+" ref_description="SGN-E708414 [FA35CG11]">
      <seq>cccgtatttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctgttagcggtttacatggcagagacacacagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="85806" stop="89155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86101" g_stop="86287" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="346" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87927" g_stop="88086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="506" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88529" g_stop="88855" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="833" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E708414" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86101" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88086"/>
          <exon e_start="88529" e_stop="88855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCG-CTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCT</genome_strand>
        <mrna_strand>CCCGTATTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTTACATGGCAGAGACACACAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379021" ref_strand="+" ref_description="SGN-E379021 [TUS-1-D17](-)">
      <seq>ccccagggccttgttttggtcccacgaggaagtgatgatagtgtcgtggtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctctccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaatcacaggtgttccacgaagtatatgacgttgtgttatgcctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctgttagcggtttccatggcagagacacacagctgctgtttgtaatttattgaagagtgtataatgcggattatggatttgtagttgatagcaatttctgtacaagttgttgaatccaaaatcatagcagacgattgatgtgttaaaaagatagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="87650" stop="89275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87950" g_stop="88086" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88529" g_stop="88975" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="584" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E379021" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87950" e_stop="88086"/>
          <exon e_start="88529" e_stop="88975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTT</genome_strand>
        <mrna_strand>CCCCAGGGCCTTGTTTTGGTCCCACGAGGAAGTGATGATAGTGTCGTGGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCTCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAATCACAGGTGTTCCACGAAGTATATGACGTTGTGTTATGCCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTTCCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTGTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374946" ref_strand="+" ref_description="SGN-E374946 [TUS-15-I17](-)">
      <seq>ggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctgttagcggttaccatggcagagacacacagctgctgtttgtaatttattgaagagtgtataatgcggattatggatttgtagttgatagcaatttctttacaagttgttgaatccaaaatcatagcagacgattgatgtgttaaaaagatagcttgtatacacctaaaacagagattttagaagttgcttttttttaatcttaggatctgaaaagcaataagctgcttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="87656" stop="89354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87956" g_stop="88086" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88529" g_stop="89053" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="656" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E374946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87956" e_stop="88086"/>
          <exon e_start="88529" e_stop="89053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</genome_strand>
        <mrna_strand>GGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588648" ref_strand="+" ref_description="SGN-E588648 [42206]">
      <seq>gcggaagtggacctcctcctccctgggacagcaagattccagattcagcttggggtgaatatgccagcgagggcggagtatataccaaaagaaggtcaaacacaggtgttccacgaagtatatgacgttgtgttatacttggggataattgacatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattccgtttccatttctgctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="87752" stop="89032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88052" g_stop="88086" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.594" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88529" g_stop="88732" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="239" r_length="204" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E588648" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88052" e_stop="88086"/>
          <exon e_start="88529" e_stop="88732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGA</genome_strand>
        <mrna_strand>GCGGAAGTGGACCTCCTCCTCCCTGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGATTCAGCTTGGGGTGAATATGCCAGCGAGGGCGGAGTATATACCAAAAGAAGGTCAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACTTGGGGATAATTGACATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCCGTTTCCATTTCTGCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201180" ref_strand="-" ref_description="SGN-E201180 [cLEC-10-C21]">
      <seq>atcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctgttagcggttaccatggcagagacacacagctgctgtttgtaatttattgaagagtgtataatgcggattatggatttgtagttgatagcaatttctttacaagttgttgaatccaaaatcatagcagacgattgatgtgttaaaaagatagcttgtatacacctaaaacagagattttagaagttgcttttttttaatcttaggatctgaaaagcaataagctgcttttaaaaaaaaaaaaaaaaaaaactagagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="88394" stop="89354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88694" g_stop="89053" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="378"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E201180" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201180" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88694" e_stop="89053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</genome_strand>
        <mrna_strand>ATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716520" ref_strand="+" ref_description="SGN-E716520 [FB17BB05]">
      <seq>ccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatcaatgcctccaccccctccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagctatggctaatttcactccaggtggacacatgggtagacctccaatgatgcctccacaaggttttccaggtcaacaacagatgcaaggccaaggaatgcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatcttacaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttcagatcctaagattaaaaaaaagcaacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="89851" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89551" g_stop="88990" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E716520" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89551" e_stop="88990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAAATCTCTG</genome_strand>
        <mrna_strand>CCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTACAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396013" ref_strand="+" ref_description="SGN-E396013 [TUS-18-H8]">
      <seq>acaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatcaatgcctccaccccctccccttatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagctatggctaatttcactccaggtggacacatgggtagacctccaatgatgcctccacaaggttttccaggtcaacaacagatgcaaggccaaggaatgcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatctttcaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttcagatcctaagattaaaaaaaagcaacttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="89827" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89527" g_stop="88997" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="541"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E396013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89527" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</genome_strand>
        <mrna_strand>ACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396012" ref_strand="+" ref_description="SGN-E396012 [TUS-18-H8](-)">
      <seq>gctaatttcactccaggtggaaaaaagggtagacctccaatgatgcctccacaaggttttccaggtcaacaacagatgcaaggccaaggaatgcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatctttcaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttcagatcctaagattaaaaaaaagcaacttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="89667" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89367" g_stop="88997" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="381"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E396012" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89367" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</genome_strand>
        <mrna_strand>GCTAATTTCACTCCAGGTGGAAAAAAGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369533" ref_strand="+" ref_description="SGN-E369533 [TUS-25-B4](-)">
      <seq>gcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatctttcaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttcagatcctaagattgagaaaaagcaacttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="89575" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89275" g_stop="88997" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E369533" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89275" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</genome_strand>
        <mrna_strand>GCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTGAGAAAAAGCAACTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229344" ref_strand="+" ref_description="SGN-E229344 [cLEL-4-F3](-)">
      <seq>ctccaggtggacacatgggtagacctccaatgatgcctccacaaggttttccaggtcaacaacagatgcaaggccaaggaatgcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatctttcaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="89657" stop="88727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89357" g_stop="89013" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E229344" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89357" e_stop="89013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAA</genome_strand>
        <mrna_strand>CTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574103" ref_strand="+" ref_description="SGN-E574103 [33518]">
      <seq>tcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagactcaaaaatgttcactttgcagttatacttcaagactaagccaccggagactaacaagccaccaaccgctcctacagacaatgggttgtcagcacctggtgcctcatccaggcctctacctccaccaccccaagctccacctccaccaccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctgcccctggatcaatgcctccaccccctccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagcaatggctaatttcactccaggtggacacatggggagacctccaatgaagcctccacaaggttttccaggtcaacagatgcaaggccaaggaatgcgcccgctacctccaccacccaacatgggttgatgaactgaatacctacctttaatgcatggatgacatcagttaaattcttctttcgtggtgatttttgagtttgtggttttcgtccatttaaaccttacaaaatcatttatgttgccagaaactgttgtatctgttaggccgattcgtgttatctttgaaggcttttgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="90165" stop="88771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89964" g_stop="89951" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="89" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89664" g_stop="89070" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="686" r_length="597" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E574103" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89964" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCA--T----CTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTA-CCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGT-TTATCTTTGAAGGCTTTTGAGAA</genome_strand>
        <mrna_strand>TCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGACTCAAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACCGGAGACTAACAAGCCACCAACCGCTCCTACAGACAATGGGTTGTCAGCACCTGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCACCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGCCCCTGGATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCAATGGCTAATTTCACTCCAGGTGGACACATGGGGAGACCTCCAATGAAGCCTCCACAAGGTTTTCCAGGT---CAACAGATGCAAGGCCAAGGAATGCGCCCGCTACCTCCACCACCCAACATGGGTTGATGAACTGAATACCTACCTTTAATGCATGGATGACAT--CAGTTAAATTCTTC-TTTCGTGGTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAACCTTACAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGATTCGTGTTATCTTTGAAGGCTTTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407593" ref_strand="+" ref_description="SGN-E407593 [PPI-7-H24]">
      <seq>ctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcttttgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggacccagactcaaaaatgttcactttgcagttatacttcaagactaagccaccggagactaacaagccaccaaccgctcctacagacaacgggttgtcagcacctggtgcctcatccaggcctctacccccaccaccccaagctccacctccaccaccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctgcccctggatcaatgcctccaccccctccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagcaatggctaatttcactccaggtggacacatgggaagacctccaatgatgcctccacaaggttttccaggtcaacagatgcaaggccaaggaatgcgcccaccaccttcaccacccaacatggggtgatgaaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="92329" stop="88934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92029" g_stop="91972" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="124" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="199" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="274" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89664" g_stop="89234" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="708" r_length="434" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E407593" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92029" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCA--T----CTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGA</genome_strand>
        <mrna_strand>CTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCTTTTGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGACCCAGACTCAAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACCGGAGACTAACAAGCCACCAACCGCTCCTACAGACAACGGGTTGTCAGCACCTGGTGCCTCATCCAGGCCTCTACCCCCACCACCCCAAGCTCCACCTCCACCACCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGCCCCTGGATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCAATGGCTAATTTCACTCCAGGTGGACACATGGGAAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGT---CAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTTCACCACCCAACATGGGGTGATGAACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708811" ref_strand="+" ref_description="SGN-E708811 [FA36DD02]">
      <seq>ccggtaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatncatgcctccaccccctcccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagctatggctaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93748" stop="89060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93448" g_stop="93151" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="375" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="441" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="516" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="591" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89360" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="897" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E708811" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93448" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCT-CCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTT</genome_strand>
        <mrna_strand>CCGGTAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATNCATGCCTCCACCCCCTCCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727384" ref_strand="+" ref_description="SGN-E727384 [LA14CB10]">
      <seq>acgaaatggacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatcaatgcctccaccccctccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="89099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="545" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="620" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89399" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="886" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E727384" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCC</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730229" ref_strand="+" ref_description="SGN-E730229 [LA23CA01]">
      <seq>ccattaagggacagagaatggggntcgaagccgggaagcggccgttccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatcaatgcctccacccctccccctatgggtaacggacctagacctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93773" stop="89124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93151" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="405" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="471" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="546" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="621" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89424" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="861" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E730229" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGC</genome_strand>
        <mrna_strand>CCATTAAGGGACAGAGAATGGGGNTCGAAGCCGGGAAGCGGCCGTTCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCA-CCCCTCCCCCTATGGGTAACGGACCTAGACCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730000" ref_strand="+" ref_description="SGN-E730000 [LA22DA02]">
      <seq>gaacgaaatggacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggccccacatctggatcaatgcctccaccccctccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93779" stop="89151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93479" g_stop="93151" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="406" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="472" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="622" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89449" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="838" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E730000" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93479" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTT</genome_strand>
        <mrna_strand>GAACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCCACATCTGGATCAATGCCTCCACCCCCTCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697692" ref_strand="+" ref_description="SGN-E697692 [FA03DD02]">
      <seq>gagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctctacctccaccacaaggtcttcctcctggagctcccaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="90539" stop="89198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90239" g_stop="90186" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="129" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="204" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89664" g_stop="89498" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="371" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E697692" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90239" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCC</genome_strand>
        <mrna_strand>GAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCTACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553948" ref_strand="+" ref_description="SGN-E553948 [cTSC-2-L3]">
      <seq>gaacgaaatggacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93779" stop="89227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93479" g_stop="93151" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="406" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="472" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="622" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89527" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="760" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E553948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93479" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCA</genome_strand>
        <mrna_strand>GAACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303032" ref_strand="+" ref_description="SGN-E303032 [cLEW-26-M2]">
      <seq>aaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93656" stop="89278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93356" g_stop="93151" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="283" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="349" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="499" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89578" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="586" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E303032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93356" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCC</genome_strand>
        <mrna_strand>AAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484839" ref_strand="+" ref_description="SGN-E484839 [cSTE-15-B19]">
      <seq>acgaaatggacagagaatggggttcgaagccgggaggcggcggcgccgcctccgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggttagctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcccgctcaacctcagcctcataagcgcaaagtcactctcaaaagaaacgttaaaattggtcggcctggctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagactcaaaaatgttcactttgcagttatacttcaagactaagccaccggagactaacaagccaccaaccgctcctacagaaatggggttgtcagcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="89283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.590" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="545" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="620" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89583" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="702" r_length="82" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E484839" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAG</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAGGCGGCGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGTTAGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCCGCTCAACCTCAGCCTCATAAGCGCAAAGTCACTCTCAAAAGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTCGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGACTCAAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACCGGAGACTAACAAGCCACCAACCGCTCCTACAGAAATGGGGTTGTCAGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369534" ref_strand="+" ref_description="SGN-E369534 [TUS-25-B4]">
      <seq>gggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagttttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagcccaccaactgctcctacagacaacgggttgtcagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93746" stop="89285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93446" g_stop="93151" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="373" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="439" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="590" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89585" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="671" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E369534" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93446" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAG-TTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAG-CCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACC</genome_strand>
        <mrna_strand>GGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610511" ref_strand="+" ref_description="SGN-E610511 [57673]">
      <seq>gaaatggacagagaatggggttctgaagccgggaggctggcgtgcgccgcctccgttccagaacgaggcaatcgaccgccgtgagcggttgcgccggttagctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggtttcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcccgctcaacctcagcctcataagcgcaaagtcactctcaaaagaaacgttaaaattggtcggcctggctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagactcaaaaatgttcactttgcagttatacttcaagactaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93775" stop="89338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93475" g_stop="93151" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.590" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="406" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="472" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="622" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89638" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="649" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E610511" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93475" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGACAGAGAATGGGGTTC-GAAGCCGGGAAGC-GGCG-GCGCCGCCTCTG-CCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCA</genome_strand>
        <mrna_strand>GAAATGGACAGAGAATGGGGTTCTGAAGCCGGGAGGCTGGCGTGCGCCGCCTCCGTTCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGTTAGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGTTTCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCCGCTCAACCTCAGCCTCATAAGCGCAAAGTCACTCTCAAAAGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTCGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGACTCAAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247293" ref_strand="+" ref_description="SGN-E247293 [cLEF-46-G8]">
      <seq>gggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93746" stop="89473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93446" g_stop="93151" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="373" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="439" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="589" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="89659" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="595" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E247293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93446" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="89659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAG</genome_strand>
        <mrna_strand>GGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486194" ref_strand="+" ref_description="SGN-E486194 [cSTE-21-K6]">
      <seq>acgaaatggacagagaatggggttcgaagccgggaggcggcggcgccgcctccgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggttagctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcgtcagactagtttagctaaaagagctgctcgtgaagctaaagatgctcccgctcgacctcagcctcataagcgcaaagtcactctcaaaagaaacgttaaaattggtcggcctggctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagactacacaaagcctaggcaccgattcatggcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttgcaagcactgagattgacgaatcaactcccaagtttttctcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="89506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.590" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="545" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89806" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="592" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E486194" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCA</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAGGCGGCGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGTTAGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCGTCAGACTAGTTTAGCTAAAAGAGCTGCTCGTGAAGCTAAAGATGCTCCCGCTCGACCTCAGCCTCATAAGCGCAAAGTCACTCTCAAAAGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTCGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACTACACAAAGCCTAGGCACCGATTCATGGCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTGCAAGCACTGAGATTGACGAATCAACTCCCAAGTTTTTCTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319860" ref_strand="+" ref_description="SGN-E319860 [cTOB-12-C7]">
      <seq>agagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaatcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93766" stop="89507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93466" g_stop="93151" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="393" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="459" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="534" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89807" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="580" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E319860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93466" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGC</genome_strand>
        <mrna_strand>AGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAATCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450415" ref_strand="+" ref_description="SGN-E450415 [cSTS-9-E10]">
      <seq>acgaaatggacagagaatggggttcgaagccgggaagcggcggcgccgcctccgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggttagctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaacgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacgaagccaaggcaccgatttatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="89655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.590" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="541" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E450415" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATT</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGTTAGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACGAAGCCAAGGCACCGATTTATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312666" ref_strand="+" ref_description="SGN-E312666 [cLEZ-20-L6]">
      <seq>gacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93769" stop="89655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93469" g_stop="93151" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="396" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="462" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="533" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E312666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93469" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATT</genome_strand>
        <mrna_strand>GACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213111" ref_strand="+" ref_description="SGN-E213111 [cLEC-72-C7]">
      <seq>acagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctggttgctgctgaaccatatgagatcatttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93768" stop="89655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93468" g_stop="93151" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="395" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="461" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="532" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E213111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93468" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATT</genome_strand>
        <mrna_strand>ACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGGTTGCTGCTGAACCATATGAGATCATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209036" ref_strand="+" ref_description="SGN-E209036 [cLEC-38-L23]">
      <seq>agagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93766" stop="89656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93466" g_stop="93151" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="393" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="459" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89956" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="529" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E209036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93466" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCAT</genome_strand>
        <mrna_strand>AGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311619" ref_strand="+" ref_description="SGN-E311619 [cLEZ-9-M7]">
      <seq>agagacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttattgcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagcttcttctgtttgctgctgaaccatatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93769" stop="89666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93151" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="399" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="465" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89966" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="525" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E311619" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAG</genome_strand>
        <mrna_strand>AGAGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTGCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGCTTCTTCTGTTTGCTGCTGAACCATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482219" ref_strand="+" ref_description="SGN-E482219 [cSTD-21-K6]">
      <seq>acgaaatggacagagaatggggttcgaagccgggaggcggcggcgccgcctccgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggttagctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcccgctcaacctcagcctcataagcgcaaagtcactctcaaaagaaacgttaaaattggtcggcctggctaccgagtgaccaagcaatttgatccggagacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="89710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.590" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="90010" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="486" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E482219" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="90010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTG</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAGGCGGCGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGTTAGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCCGCTCAACCTCAGCCTCATAAGCGCAAAGTCACTCTCAAAAGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTCGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAGACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246361" ref_strand="+" ref_description="SGN-E246361 [cLEF-52-E16]">
      <seq>gagagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaaccgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgccgaaatcatctcggaagctatgaatgtaagcctttgcttgacgttaccacaacaatgaagggaattaccttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93769" stop="89895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93469" g_stop="93151" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="401" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90195" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E246361" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93469" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAA-CGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATG-CGAAATCATCTCGGAAGCTATGAATGTAAG-CTTTGCTTGACGTTA-CACAACAATGAAGGGAATTA-CTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCA</genome_strand>
        <mrna_strand>GAGAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACCGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCCGAAATCATCTCGGAAGCTATGAATGTAAGCCTTTGCTTGACGTTACCACAACAATGAAGGGAATTACCTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703155" ref_strand="+" ref_description="SGN-E703155 [FA20CH04]">
      <seq>gagaaagtagtgaatcatgccaaaagctttctgaatacttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgacagagaatccgagagagctgtgaccagggaagaaggcattgccttagcgaaggaacttggaggtctatttcttgaatgtagtgctaaaactcgagaaaatgtgcaaaactgctttgaagagcttgccttanagataatggaggtgcctagtctccttgaagaaggatccactgtagggaagagatatatcttgaaacagaaacnagaacagcaaacacaacagggcggtggtggttgctgctcatgataaaaaaattgtgcactagatggtgcacatatcaaatatgtatatgctggtttcttttccttcttactgtttttatcttgctgctgctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98870" stop="104731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99170" g_stop="99498" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="464" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103069" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="586" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103688" g_stop="103816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="715" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104225" g_stop="104431" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="921" r_length="206" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E703155" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99170" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103069"/>
          <exon e_start="103688" e_stop="103816"/>
          <exon e_start="104225" e_stop="104431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGA</genome_strand>
        <mrna_strand>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTANAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGATATATCTTGAAACAGAAACNAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGAT-AAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGGTTTCTTTTCCTTCTTACTGTTTTTATCTTGCTGCTGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711032" ref_strand="+" ref_description="SGN-E711032 [FA57DA03]">
      <seq>gtgaatcatgccaaaagctttctgaatacttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcatcctccccccccacgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgacagagaatccgagagagctgtgaccagggaagaaggcattgccttagcgaaggaacttggaggtctatttcttgaatgtagtgctaaaactcgagaaaatgtgcaaaactgctttgaagagcttgccttaaagataatggaggtgccctagtctccttgaagaaggatccactgtagggaagagaaatatcttgaaacagaaacaagaacagcaaacacaacagggcggtggtggttgctgctcatgataaaaaaaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98879" stop="104652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99179" g_stop="99498" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="389" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="455" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103069" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="577" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103688" g_stop="103816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="706" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104225" g_stop="104352" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="835" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E711032" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99179" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103069"/>
          <exon e_start="103688" e_stop="103816"/>
          <exon e_start="104225" e_stop="104352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTG-CCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTG</genome_strand>
        <mrna_strand>GTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATCCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCACGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGAGGTGCCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391825" ref_strand="+" ref_description="SGN-E391825 [TUS-24-L23]">
      <seq>aatacttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgacagagaatccgagagagctgtgaccagggaaaaaaggcattgccttaacgaaggaacttggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98903" stop="104047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99203" g_stop="99498" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="365" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="431" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103069" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="553" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103688" g_stop="103747" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="614" r_length="61" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E391825" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99203" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103069"/>
          <exon e_start="103688" e_stop="103747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGG-AAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGT</genome_strand>
        <mrna_strand>AATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGCTGTGACCAGGGAAAAAAGGCATTGCCTTAACGAAGGAACTTGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246537" ref_strand="+" ref_description="SGN-E246537 [cLEF-45-I12]">
      <seq>atacttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98904" stop="103366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99204" g_stop="99498" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="364" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="430" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103066" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="549" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E246537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99204" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGAC</genome_strand>
        <mrna_strand>ATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310861" ref_strand="+" ref_description="SGN-E310861 [cLEZ-15-J11]">
      <seq>ttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcacgattgtgtaaagatgctggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98908" stop="103354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99208" g_stop="99498" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="360" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="426" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103054" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="533" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E310861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99208" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGA</genome_strand>
        <mrna_strand>TTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCACGATTGTGTAAAGATGCTGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346462" ref_strand="+" ref_description="SGN-E346462 [cTOF-23-L9]">
      <seq>ttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgacagagaatccgagagagctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98954" stop="104006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99254" g_stop="99498" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="314" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="380" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103069" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="502" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103688" g_stop="103706" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="521" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E346462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99254" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103069"/>
          <exon e_start="103688" e_stop="103706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGA</genome_strand>
        <mrna_strand>TTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462344" ref_strand="+" ref_description="SGN-E462344 [cPRO-11-K14]">
      <seq>gaaagtgcagagtttttgtgttgaattggaaggaggaatttttttgagagagagagagttgagttgagaaaggaggagttcgccgatgggtccatcaacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgtcgattttaagatcaagacgctcagtgttagtgggaaaaaactgaagcttaccatttgggacacagctggacaggagagattcaggacactgacaagctcctactatagaggtgctcaggggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagttgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98974" stop="103366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99309" g_stop="99498" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="236" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="305" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="371" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103066" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="490" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E462344" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99309" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGAC</genome_strand>
        <mrna_strand>AGAGAGAGAGAGTTGAGTTGAGAAAGGAGGAGTTCGCCGATGGGTCCATCAACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGATTTTAAGATCAAGACGCTCAGTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGGAGAGATTCAGGACACTGACAAGCTCCTACTATAGAGGTGCTCAGGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGTTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392072" ref_strand="+" ref_description="SGN-E392072 [TUS-24-L23](-)">
      <seq>aacctttttgatgggtgggcaaaagagggggagctgtatagtaataatcgggattgtgtaaagatggtggttggaaataaagttgacagagaatccgagagagttgtgaccagggaagaaggcattgctttagggaaggaactggggggtttattttttgaatgtagtgttaaaactggggaaaatgtgcaaaattgctttgaagagcttgccttaaagataaggggggggcttagtttccttgaagaaggatccactgtagggaagggaaattttttgaaacggaaacaagaacggcaaacccaacgggggggggggggttgctgctcatgataaaaaaaattgtgcattagatggtgcacatttcaaatatgtttatggtgttttttttttttttttactgttttttttttgggggtgctttgaaaggggttagtagtttcatgtaaagtaattgatggatgttggtcattgaccaatgtttttgttaatttttgccagattgctgtcaaattggggggtatttcataattttaatgggcatttcatcggtaaaaaaaaaaaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="102680" stop="104860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102980" g_stop="103069" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103688" g_stop="103816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="219" r_length="129" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104225" g_stop="104559" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="554" r_length="335" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="607"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-E392072" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102980" e_stop="103069"/>
          <exon e_start="103688" e_stop="103816"/>
          <exon e_start="104225" e_stop="104559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</genome_strand>
        <mrna_strand>AACCTTTTTGATGGGTGGGCAAAAGAGGGGGAGCTGTATAGTAATAATCGGGATTGTGTAAAGATGGTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGTTGTGACCAGGGAAGAAGGCATTGCTTTAGGGAAGGAACTGGGGGGTTTATTTTTTGAATGTAGTGTTAAAACTGGGGAAAATGTGCAAAATTGCTTTGAAGAGCTTGCCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGGGGGGCTTAGTTTCCTTGAAGAAGGATCCACTGTAGGGAAGGGAAATTTTTTGAAACGGAAACAAGAACGGCAAACCCAACGGGGGGGGGGGGGTTGCTGCTCATGATAAAAAAAATTGTGCATTAGATGGTGCACATTTCAAATATGTTTATGGTGTTTTTTTTTTTTTTTTACTGTTTTTTTTTTGGGGGTGCTTTGAAAGGGGTTAGTAGTTTCATGTAAAGTAATTGATGGATGTTGGTCATTGACCAATGTTTTTGTTAATTTTTGCCAGATTGCTGTCAAATTGGGGGGTATTTCATAATTTTAATGGGCATTTCATCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349213" ref_strand="+" ref_description="SGN-E349213 [cTOS-2-M24]">
      <seq>tttaatggaaacattgatgaacctctagaagatggggacactgctcttcatattacttgtctgtatggccatctggcatgtgtggagctactgttagagagaggagcttctgtggaggctaaggatgaagatggagcaattccattgcatgatgcttgtgctggaggatacacagaaatagcccgtctgctaatcaacaatgcacctgaccctgaatgcgtgaaaaggatgctggacacctttgatgaagaaggtgatgcgcctctccatcatgccgccagaggtgaacatttagatgtgatcagattattgatagcttcaggggcttctgcttgtaggaacaatttattaggaaggaccccatctgagcttgttgagcctgaaagtgaagcttgcataatcttagacgaagctataagtgctgaaatcggccgtccctataggtctacgtaaagaaaatttggacgctcggctattgtcgatatgtttccccttgttctgtaggtactagtgttatattagaaactcggatattatgcttgaatgttaaaatactctttatatagtgagattgcacattgcagtatgagaaatactcatcttttttgaagcgactgttaaatgattcatcaactagaattatagaatatggaaactttatttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="106333" stop="104481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106033" g_stop="105947" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105946" i_stop="105818" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105817" g_stop="105739" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="166" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105738" i_stop="105495" i_length="244">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105494" g_stop="105400" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105399" i_stop="105281" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105280" g_stop="105185" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105184" i_stop="105091" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105090" g_stop="104782" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="666" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="677"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-E349213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106033" e_stop="105947"/>
          <exon e_start="105817" e_stop="105739"/>
          <exon e_start="105494" e_stop="105400"/>
          <exon e_start="105280" e_stop="105185"/>
          <exon e_start="105090" e_stop="104782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAGGTTGGTCCACTCTCTATTCTCAAGTCGGAAACAGTCCCTACAGCAGACATTACATTACGGTGGATCTTTGGTGTTGATTTCATTATCATGTTTTTGACTAATACTAATATAATATTGTTTTTGACTCAGCTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAGGTATACCATAAGTTTACCAGTGTTCCAAGTCCTTCATTGACGAATCTTTTCACCATAACGAGATGTAATAAACTAGTAAATTGTACAGTCAGGTTTTAAACGCATTTATTAAGCATTAAGTGAACTAACTACATTAACCGAGCCTTTTGAGGAAGTGAGGAGTAAGGGGATCAATGTAGGTTTCTGTTAAAAAGGAATCATAAGCTTGCATTTCTTACTTTCTGAATGCTGATTATTTCAACAGGATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCGGTGAGGCATTTCTACTAATATTTAACGCTATGCAAAGTTTCAATTATTTAAATATTGGAAATTAGTAAATGAAACAGCTACAGCACTTGTACTGATTGTATTTGTTGTAATTTTCATAGCCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGGGTAAGTGCAGCAAATACTCAAATTAGACTTTCTTTTTTTTTAATTTTATGTCTGATTAACTCAATTTGGCTCGATTGACTTGTGATTATCGCAGACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</genome_strand>
        <mrna_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG.................................................................................................................................CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG....................................................................................................................................................................................................................................................GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG.......................................................................................................................CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG..............................................................................................ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>72</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12786" PGL_stop="13524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12786" e_stop="13524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="12786" e_stop="13524" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12786" stop="13524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTCAAACAATGGCTTCTTCTTCTTCTTCTTCCCTATGTAAAGAGCTTCATTTTCTATTGATACCTTTAATGTCACAAAGTCATATTATACCAATAATAGACTTTGCTAAATTACTAGCCCTACATAGAGTCAAAATATCAATCATCACAACACCTCTCAATGCCCAAAAATACAAATCTATAGTCACACATGCCCTAAAATCCAATCTAAATATTCAACTAATACCTATTCATTTTCCAACCCAAGAATTTGGATTGCCTCAAGGATGTGAAAATATGGACTCACTTAATTCACTAGAAATGTTTCAAAATTTCCTTTTGGCTAGTGAAATGATGCAAGAACCACTAGAGAAATTGATTCAAGATCATATGGAACCAAAGCCAAGTTGTATCATTTCTACTAGTCCTCTCACTTGGACTCAACAACTTGCTAATAAGTTCAACATTCCTAGGTATATATTTCAAACTATTTCTTGTTTCACCCTCTATTGTTCTCATATGTTAAATGAAACAAACACACAAGACACCCTTGTGTTGGATGATGATACATTCTTGATACCTAATATACCACACAAGATTGAGTTTACAAAGGCTCAATTGCCTCAATCTACTCAAGATATGAAGAGTCTTGTTGACAAAATGAAGAAGTTTCAAGATTTGGCTAGAGGTACTTTGATTAATACTTTTGAGGAGTTGGAACCTTGGTATGTTGAGTCATACAAGAAAGTTGTGAAC</gDNA_template>
            <first_frame> F  F  S  N  N  G  F  F  F  F  F  F  P  M  *  R  A  S  F  S  I  D  T  F  N  V  T  K  S  Y  Y  T  N  N  R  L  C  *  I  T  S  P  T  *  S  Q  N  I  N  H  H  N  T  S  Q  C  P  K  I  Q  I  Y  S  H  T  C  P  K  I  Q  S  K  Y  S  T  N  T  Y  S  F  S  N  P  R  I  W  I  A  S  R  M  *  K  Y  G  L  T  *  F  T  R  N  V  S  K  F  P  F  G  *  *  N  D  A  R  T  T  R  E  I  D  S  R  S  Y  G  T  K  A  K  L  Y  H  F  Y  *  S  S  H  L  D  S  T  T  C  *  *  V  Q  H  S  *  V  Y  I  S  N  Y  F  L  F  H  P  L  L  F  S  Y  V  K  *  N  K  H  T  R  H  P  C  V  G  *  *  Y  I  L  D  T  *  Y  T  T  Q  D  *  V  Y  K  G  S  I  A  S  I  Y  S  R  Y  E  E  S  C  *  Q  N  E  E  V  S  R  F  G  *  R  Y  F  D  *  Y  F  *  G  V  G  T  L  V  C  *  V  I  Q  E  S  C  E  </first_frame>
            <second_frame>  F  S  Q  T  M  A  S  S  S  S  S  S  L  C  K  E  L  H  F  L  L  I  P  L  M  S  Q  S  H  I  I  P  I  I  D  F  A  K  L  L  A  L  H  R  V  K  I  S  I  I  T  T  P  L  N  A  Q  K  Y  K  S  I  V  T  H  A  L  K  S  N  L  N  I  Q  L  I  P  I  H  F  P  T  Q  E  F  G  L  P  Q  G  C  E  N  M  D  S  L  N  S  L  E  M  F  Q  N  F  L  L  A  S  E  M  M  Q  E  P  L  E  K  L  I  Q  D  H  M  E  P  K  P  S  C  I  I  S  T  S  P  L  T  W  T  Q  Q  L  A  N  K  F  N  I  P  R  Y  I  F  Q  T  I  S  C  F  T  L  Y  C  S  H  M  L  N  E  T  N  T  Q  D  T  L  V  L  D  D  D  T  F  L  I  P  N  I  P  H  K  I  E  F  T  K  A  Q  L  P  Q  S  T  Q  D  M  K  S  L  V  D  K  M  K  K  F  Q  D  L  A  R  G  T  L  I  N  T  F  E  E  L  E  P  W  Y  V  E  S  Y  K  K  V  V  N </second_frame>
            <third_frame>   F  L  K  Q  W  L  L  L  L  L  L  P  Y  V  K  S  F  I  F  Y  *  Y  L  *  C  H  K  V  I  L  Y  Q  *  *  T  L  L  N  Y  *  P  Y  I  E  S  K  Y  Q  S  S  Q  H  L  S  M  P  K  N  T  N  L  *  S  H  M  P  *  N  P  I  *  I  F  N  *  Y  L  F  I  F  Q  P  K  N  L  D  C  L  K  D  V  K  I  W  T  H  L  I  H  *  K  C  F  K  I  S  F  W  L  V  K  *  C  K  N  H  *  R  N  *  F  K  I  I  W  N  Q  S  Q  V  V  S  F  L  L  V  L  S  L  G  L  N  N  L  L  I  S  S  T  F  L  G  I  Y  F  K  L  F  L  V  S  P  S  I  V  L  I  C  *  M  K  Q  T  H  K  T  P  L  C  W  M  M  I  H  S  *  Y  L  I  Y  H  T  R  L  S  L  Q  R  L  N  C  L  N  L  L  K  I  *  R  V  L  L  T  K  *  R  S  F  K  I  W  L  E  V  L  *  L  I  L  L  R  S  W  N  L  G  M  L  S  H  T  R  K  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12787" stop="13524"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSQTMASSSSSSLCKELHFLLIPLMSQSHIIPIIDFAKLLALHRVKISIITTPLNAQKYKSIVTHALKSNLNIQLIPIHFPTQEFGLPQGCENMDSLNSLEMFQNFLLASEMMQEPLEKLIQDHMEPKPSCIISTSPLTWTQQLANKFNIPRYIFQTISCFTLYCSHMLNETNTQDTLVLDDDTFLIPNIPHKIEFTKAQLPQSTQDMKSLVDKMKKFQDLARGTLINTFEELEPWYVESYKKVVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13795" PGL_stop="14445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13795" e_stop="14302"/>
            <exon e_start="14412" e_stop="14445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.119" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="13795" e_stop="14302" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.119" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14303" i_stop="14411" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="14412" e_stop="14445" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13795" stop="14302"/>
              <exon start="14412" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319728" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA : TTGAAAAAGAAAAAAAAAAACTTAAAAGTGTAGA</gDNA_template>
            <first_frame> K  W  L  R  D  E  N  F  E  D  R  V  R  G  R  G  M  I  I  R  G  W  A  P  Q  V  L  I  L  S  H  P  S  V  G  G  F  L  T  H  C  G  W  N  S  A  L  E  G  I  S  R  G  V  P  M  T  T  F  P  M  F  A  E  Q  F  Y  N  E  K  F  I  V  N  I  L  K  T  G  V  G  V  G  V  E  V  S  T  T  S  W  N  E  E  K  S  G  V  L  V  S  K  D  E  V  K  R  A  I  N  Q  L  M  D  Q  G  L  E  G  E  E  R  R  K  I  A  K  D  L  S  H  I  S  K  K  A  I  Q  E  E  G  S  S  Y  L  N  I  K  L  L  I  E  D  V  M  H  V  L  K  N  K  E  E  I  E  *  I  L  K   : I  E  K  E  K  K  K  L  K  S  V   </first_frame>
            <second_frame>  N  G  *  E  M  K  I  L  K  I  G  L  E  E  E  G  *  L  L  E  V  G  P  H  K  S  *  Y  Y  L  I  L  P  S  E  D  S  *  H  T  V  D  G  T  Q  H  *  K  G  S  L  V  A  C  Q  *  L  L  F  L  C  L  P  N  N  F  T  M  R  S  L  S  *  I  S  *  R  L  E  L  E  L  V  L  K  *  V  L  P  L  G  M  K  R  R  V  E  Y  W  L  A  K  M  K  S  K  E  Q  *  I  N  *  W  I  K  D  *  R  V  K  K  E  E  K  *  Q  R  I  C  H  I  F  Q  R  R  L  Y  K  K  K  V  L  H  T  *  I  S  N  Y  *  L  K  M  S  C  M  Y  S  K  I  K  R  K  L  N  R  F  *  R  :  L  K  K  K  K  K  N  L  K  V  *  </second_frame>
            <third_frame>   M  A  K  R  *  K  F  *  R  *  G  *  R  K  R  D  D  Y  *  R  L  G  P  T  S  P  N  I  I  S  S  F  R  R  R  I  L  N  T  L  W  M  E  L  S  T  R  R  D  L  S  W  R  A  N  D  Y  F  S  Y  V  C  R  T  I  L  Q  *  E  V  Y  R  K  Y  L  E  D  W  S  W  S  W  C  *  S  E  Y  Y  L  L  E  *  R  E  E  W  S  I  G  *  Q  R  *  S  Q  K  S  N  K  S  I  N  G  S  R  I  R  G  *  R  K  K  K  N  S  K  G  F  V  T  Y  F  K  E  G  Y  T  R  R  R  F  F  I  L  E  Y  Q  I  I  D  *  R  C  H  A  C  T  Q  K  *  R  G  N  *  I  D  F  E  D :   *  K  R  K  K  K  T  *  K  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13795" stop="14292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLRDENFEDRVRGRGMIIRGWAPQVLILSHPSVGGFLTHCGWNSALEGISRGVPMTTFPMFAEQFYNEKFIVNILKTGVGVGVEVSTTSWNEEKSGVLVSKDEVKRAINQLMDQGLEGEERRKIAKDLSHISKKAIQEEGSSYLNIKLLIEDVMHVLKNKEEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32210" PGL_stop="27187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32210" e_stop="32126"/>
            <exon e_start="32016" e_stop="31956"/>
            <exon e_start="31861" e_stop="31766"/>
            <exon e_start="31388" e_stop="31288"/>
            <exon e_start="31175" e_stop="31070"/>
            <exon e_start="30762" e_stop="30649"/>
            <exon e_start="30569" e_stop="30495"/>
            <exon e_start="29789" e_stop="29691"/>
            <exon e_start="28894" e_stop="28823"/>
            <exon e_start="28746" e_stop="28661"/>
            <exon e_start="28585" e_stop="28492"/>
            <exon e_start="27902" e_stop="27795"/>
            <exon e_start="27563" e_stop="27371"/>
            <exon e_start="27320" e_stop="27187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.629" e_score="0.985"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.466" acc_prob="0.700" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.817" e_score="0.972"/>
          <exon-intron don_prob="0.878" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="0.991"/>
          <exon-intron don_prob="0.220" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.828"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="32210" e_stop="32126" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.629">
            <gDNA_intron_boundary i_start="32125" i_stop="32017" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="32016" e_stop="31956" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31955" i_stop="31862" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="31861" e_stop="31766" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.466" acc_prob="0.700">
            <gDNA_intron_boundary i_start="31765" i_stop="31389" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="31388" e_stop="31288" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="31287" i_stop="31176" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="31175" e_stop="31070" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.817">
            <gDNA_intron_boundary i_start="31069" i_stop="30763" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30762" e_stop="30649" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.878" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30648" i_stop="30570" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30569" e_stop="30495" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.698">
            <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29789" e_stop="29691" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28894" e_stop="28823" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.747">
            <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28746" e_stop="28661" e_length="86"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="28585" e_stop="28492" e_length="94"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.892">
            <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="27902" e_stop="27795" e_length="108"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="27794" i_stop="27564" i_length="231"/>
          </intron>
          <exon e_serial="13" e_score="0.948">
            <gDNA_exon_boundary e_start="27563" e_stop="27371" e_length="193"/>
          </exon>
          <intron i_serial="13" don_prob="0.220" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27370" i_stop="27321" i_length="50"/>
          </intron>
          <exon e_serial="14" e_score="0.828">
            <gDNA_exon_boundary e_start="27320" e_stop="27187" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32210" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
              <exon start="30569" stop="30495"/>
              <exon start="29789" stop="29691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32210" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
              <exon start="30569" stop="30495"/>
              <exon start="29789" stop="29691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32192" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30551" stop="30495"/>
              <exon start="29789" stop="29691"/>
              <exon start="28894" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28492"/>
              <exon start="27902" stop="27816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30551" stop="30495"/>
              <exon start="29789" stop="29691"/>
              <exon start="28894" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30547" stop="30495"/>
              <exon start="29789" stop="29691"/>
              <exon start="28894" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28492"/>
              <exon start="27902" stop="27886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28870" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28492"/>
              <exon start="27902" stop="27795"/>
              <exon start="27563" stop="27371"/>
              <exon start="27320" stop="27187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613277" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGCTTCCGTTCTTGCAACACTAACTCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCG : TGCATTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAG : ATTCTTGCACGAGATGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCTGGCTGTATTTCCATAAAAAGACCAAAAGAG : GTTCCATCCATTTGTTTGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAG : TGATGGATTTGGTCCGCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTTTAAGAGGGCTTGTCCAG : ATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG : GTTCTCGAGTCCTCATCCAGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA : GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG : GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA : AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG : AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG : GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAG : GTTTTCGGGATGCTTGTTGGCAAAATGAGTCGTTCAACAGATGCAATCGTTAGAGCAACTTGTTCTTCAGCTCTAGGCTTGTTGCTCAAATCATCAAACGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCACATAGGGGCCATGAACCAGAATCTGCCAGGAGATTATGATTCACGATTA : GTACAGATCCAAATTATAATGTGTTTATTTCTGCAAGGATTCCATTCTTTTTGTGTACATTATTAGTGCTGTATAAAAGGTTTAGCTTCTTATTATATATCTCATGTAACATAGGGCTCGTGTGTTTGTAAAGT</gDNA_template>
            <first_frame> V  M  L  P  F  L  Q  H  *  L  F  N  W  E  A  V  M  A  *  L  V  L  V  N  *  N  H  S   : V  H  Y  W  L  H  F  K  H  S  V  N  V  L  V  I  W  K  W  G  R :   F  L  H  E  M  E  S  K  M  K  M  R  S  G  S  T  L  *  E  I  W  L  A  V  F  P  *  K  D  Q  K  R :   F  H  P  F  V  *  Y  *  A  M  R  W  I  D  L  *  D  F  N  G  N  Q  L  L  Q  L  C  Q  S  S  C  A  T   : V  M  D  L  V  R  Y  *  N  R  W  C  K  H  F  A  G  M  Y  R  M  I  L  L  L  L  G  A  S  V  *  E  G  L  S  R :   C  H  L  S  M  F  S  S  I  L  L  K  S  *  G  *  Y  *  L  C  S  M  T  Q  M  S  R  F  S  *  P  Q  Y  H  V  C  *  W :   F  S  S  P  H  P  G  M  Q  L  N  L  F  S  *  T  F  L  Y  V  F  G  I  S  K :   S  A  *  M  R  R  Y  E  P  M  L  M  R  H  L  E  H  *  A  L  T  D  L  G  L  S  K  T  L  F  L  S  R :   L  M  L  L  S  H  G  W  F  Y  I  Y  M  R  M  I  L  V  *  D  K  L  A  E :   T  L  *  N  P  L  L  P  *  W  K  L  M  E  *  L  L  F  S  T  V  T  G  L  V  R  T  I   : E  A  T  M  K  T  F  F  E  N  L  Q  G  N  *  L  K  I  L  L  P  E  *  I  G  T  W  H  Q  *  Y  R :   H  L  M  L  L  G  Q  L  S  R  Q  M  R  F  I  Y  A  A  A  C  F  L  S  P  M  I  N  T  Y  H  P  I  T  T  I  R :   F  S  G  C  L  L  A  K  *  V  V  Q  Q  M  Q  S  L  E  Q  L  V  L  Q  L  *  A  C  C  S  N  H  Q  T  Q  A  H  G  K  T  F  D  L  I  E  L  I  H  H  I  G  A  M  N  Q  N  L  P  G  D  Y  D  S  R  L  :  V  Q  I  Q  I  I  M  C  L  F  L  Q  G  F  H  S  F  C  V  H  Y  *  C  C  I  K  G  L  A  S  Y  Y  I  S  H  V  T  *  G  S  C  V  C  K   </first_frame>
            <second_frame>  L  C  F  R  S  C  N  T  N  S  S  T  G  K  L  S  W  L  S  *  Y  W  *  T  R  T  T  P  :  C  I  T  G  C  I  S  S  I  L  *  M  C  W  *  S  G  N  G  E   : D  S  C  T  R  W  R  A  K  *  K  *  E  V  D  Q  P  Y  K  R  S  G  W  L  Y  F  H  K  K  T  K  R   : G  S  I  H  L  F  D  I  E  Q  C  A  G  S  I  F  K  I  S  T  G  I  S  C  C  S  F  V  R  V  L  A  P  Q  :  *  W  I  W  S  A  I  R  T  D  G  A  S  T  L  P  A  C  I  G  *  F  S  Y  C  *  A  P  L  F  K  R  A  C  P   : D  A  I  Y  P  C  S  P  V  Y  Y  S  N  P  R  G  D  I  S  F  A  R  *  L  R  *  V  G  S  V  N  R  S  I  M  F  A  D   : G  S  R  V  L  I  Q  G  C  S  *  T  C  S  P  E  P  F  Y  T  S  S  E  S  P   : R  V  H  E  *  E  D  T  S  Q  C  L  C  G  I  W  S  T  E  H  L  R  I  W  A  S  A  R  L  F  S  *  A   : G  S  C  C  F  P  T  D  G  F  T  S  T  *  G  *  S  *  C  E  T  S  L  P   : K  H  F  E  I  H  C  S  L  D  G  N  *  W  N  N  C  C  F  Q  Q  S  L  V  *  F  G  P  S  :  R  R  L  *  R  L  S  S  R  T  C  K  A  T  N  S  K  S  C  C  P  S  R  *  V  H  G  I  N  N  T   : G  I  *  C  S  L  A  S  C  P  G  K  C  G  L  F  M  Q  Q  R  A  F  S  L  R  *  *  T  H  I  I  P  L  L  Q  S   : G  F  R  D  A  C  W  Q  N  E  S  F  N  R  C  N  R  *  S  N  L  F  F  S  S  R  L  V  A  Q  I  I  K  R  K  L  M  E  R  H  S  T  *  S  S  *  F  I  T  *  G  P  *  T  R  I  C  Q  E  I  M  I  H  D  * :   Y  R  S  K  L  *  C  V  Y  F  C  K  D  S  I  L  F  V  Y  I  I  S  A  V  *  K  V  *  L  L  I  I  Y  L  M  *  H  R  A  R  V  F  V  K  </second_frame>
            <third_frame>   Y  A  S  V  L  A  T  L  T  L  Q  L  G  S  C  H  G  L  A  S  T  G  E  L  E  P  L  R :   A  L  L  A  A  F  Q  A  F  C  E  C  V  G  D  L  E  M  G  K  :  I  L  A  R  D  G  E  Q  N  E  N  E  K  W  I  N  L  I  R  D  L  A  G  C  I  S  I  K  R  P  K  E  :  V  P  S  I  C  L  I  L  S  N  A  L  D  R  S  L  R  F  Q  R  E  S  A  A  A  A  L  S  E  F  L  R  H  S :   D  G  F  G  P  L  L  E  Q  M  V  Q  A  L  C  R  H  V  S  D  D  S  P  T  V  R  R  L  C  L  R  G  L  V  Q  :  M  P  S  I  H  V  L  Q  Y  T  T  Q  I  L  G  V  I  L  A  L  L  D  D  S  D  E  S  V  Q  L  T  A  V  S  C  L  L  M  :  V  L  E  S  S  S  R  D  A  V  E  P  V  L  L  N  L  S  I  R  L  R  N  L  Q  :  E  C  M  N  E  K  I  R  A  N  A  Y  A  A  F  G  A  L  S  T  Y  G  S  G  P  Q  Q  D  S  F  L  E  Q  :  A  H  A  A  F  P  R  M  V  L  H  L  H  E  D  D  L  S  V  R  Q  A  C  R  :  N  T  L  K  S  I  A  P  L  M  E  I  D  G  I  T  A  V  F  N  S  H  W  F  S  S  D  H  R :   G  D  Y  E  D  F  L  R  E  L  A  R  Q  L  T  Q  N  L  A  A  R  V  D  R  Y  M  A  S  I  I  Q  :  A  F  D  A  P  W  P  V  V  Q  A  N  A  V  Y  L  C  S  S  V  L  S  L  S  D  D  K  H  I  S  S  H  Y  Y  N  Q  :  V  F  G  M  L  V  G  K  M  S  R  S  T  D  A  I  V  R  A  T  C  S  S  A  L  G  L  L  L  K  S  S  N  A  S  S  W  K  D  I  R  L  D  R  A  D  S  S  H  R  G  H  E  P  E  S  A  R  R  L  *  F  T  I   : S  T  D  P  N  Y  N  V  F  I  S  A  R  I  P  F  F  L  C  T  L  L  V  L  Y  K  R  F  S  F  L  L  Y  I  S  C  N  I  G  L  V  C  L  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32208" stop="32126"/>
                    <exon start="32016" stop="31956"/>
                    <exon start="31861" stop="31766"/>
                    <exon start="31388" stop="31288"/>
                    <exon start="31175" stop="31070"/>
                    <exon start="30762" stop="30649"/>
                    <exon start="30569" stop="30495"/>
                    <exon start="29789" stop="29691"/>
                    <exon start="28894" stop="28823"/>
                    <exon start="28746" stop="28661"/>
                    <exon start="28585" stop="28492"/>
                    <exon start="27902" stop="27795"/>
                    <exon start="27563" stop="27381"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YASVLATLTLQLGSCHGLASTGELEPLRALLAAFQAFCECVGDLEMGKILARDGEQNENEKWINLIRDLAGCISIKRPKEVPSICLILSNALDRSLRFQRESAAAALSEFLRHSDGFGPLLEQMVQALCRHVSDDSPTVRRLCLRGLVQMPSIHVLQYTTQILGVILALLDDSDESVQLTAVSCLLMVLESSSRDAVEPVLLNLSIRLRNLQECMNEKIRANAYAAFGALSTYGSGPQQDSFLEQAHAAFPRMVLHLHEDDLSVRQACRNTLKSIAPLMEIDGITAVFNSHWFSSDHRGDYEDFLRELARQLTQNLAARVDRYMASIIQAFDAPWPVVQANAVYLCSSVLSLSDDKHISSHYYNQVFGMLVGKMSRSTDAIVRATCSSALGLLLKSSNASSWKDIRLDRADSSHRGHEPESARRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32210" e_stop="32126"/>
            <exon e_start="32016" e_stop="31956"/>
            <exon e_start="31861" e_stop="31766"/>
            <exon e_start="31388" e_stop="31288"/>
            <exon e_start="31175" e_stop="31070"/>
            <exon e_start="30762" e_stop="30649"/>
            <exon e_start="30569" e_stop="30495"/>
            <exon e_start="29789" e_stop="29691"/>
            <exon e_start="28894" e_stop="28211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.629" e_score="0.985"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.466" acc_prob="0.700" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.817" e_score="0.972"/>
          <exon-intron don_prob="0.878" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.698" e_score="0.973"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="32210" e_stop="32126" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.629">
            <gDNA_intron_boundary i_start="32125" i_stop="32017" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="32016" e_stop="31956" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31955" i_stop="31862" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="31861" e_stop="31766" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.466" acc_prob="0.700">
            <gDNA_intron_boundary i_start="31765" i_stop="31389" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="31388" e_stop="31288" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="31287" i_stop="31176" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="31175" e_stop="31070" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.817">
            <gDNA_intron_boundary i_start="31069" i_stop="30763" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30762" e_stop="30649" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.878" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30648" i_stop="30570" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="30569" e_stop="30495" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.698">
            <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29789" e_stop="29691" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28894" e_stop="28211" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32210" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
              <exon start="30569" stop="30495"/>
              <exon start="29789" stop="29691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32210" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
              <exon start="30569" stop="30495"/>
              <exon start="29789" stop="29691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32192" stop="32126"/>
              <exon start="32016" stop="31956"/>
              <exon start="31861" stop="31766"/>
              <exon start="31388" stop="31288"/>
              <exon start="31175" stop="31070"/>
              <exon start="30762" stop="30649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29774" stop="29691"/>
              <exon start="28894" stop="28211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGCTTCCGTTCTTGCAACACTAACTCTTCAACTGGGAAGCTGTCATGGCTTAGCTAGTACTGGTGAACTAGAACCACTCCG : TGCATTACTGGCTGCATTTCAAGCATTCTGTGAATGTGTTGGTGATCTGGAAATGGGGAAG : ATTCTTGCACGAGATGGAGAGCAAAATGAAAATGAGAAGTGGATCAACCTTATAAGAGATCTGGCTGGCTGTATTTCCATAAAAAGACCAAAAGAG : GTTCCATCCATTTGTTTGATATTGAGCAATGCGCTGGATCGATCTTTAAGATTTCAACGGGAATCAGCTGCTGCAGCTTTGTCAGAGTTCTTGCGCCACAG : TGATGGATTTGGTCCGCTATTAGAACAGATGGTGCAAGCACTTTGCCGGCATGTATCGGATGATTCTCCTACTGTTAGGCGCCTCTGTTTAAGAGGGCTTGTCCAG : ATGCCATCTATCCATGTTCTCCAGTATACTACTCAAATCCTAGGGGTGATATTAGCTTTGCTCGATGACTCAGATGAGTCGGTTCAGTTAACCGCAGTATCATGTTTGCTGATG : GTTCTCGAGTCCTCATCCAGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA : GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG : GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</gDNA_template>
            <first_frame> V  M  L  P  F  L  Q  H  *  L  F  N  W  E  A  V  M  A  *  L  V  L  V  N  *  N  H  S   : V  H  Y  W  L  H  F  K  H  S  V  N  V  L  V  I  W  K  W  G  R :   F  L  H  E  M  E  S  K  M  K  M  R  S  G  S  T  L  *  E  I  W  L  A  V  F  P  *  K  D  Q  K  R :   F  H  P  F  V  *  Y  *  A  M  R  W  I  D  L  *  D  F  N  G  N  Q  L  L  Q  L  C  Q  S  S  C  A  T   : V  M  D  L  V  R  Y  *  N  R  W  C  K  H  F  A  G  M  Y  R  M  I  L  L  L  L  G  A  S  V  *  E  G  L  S  R :   C  H  L  S  M  F  S  S  I  L  L  K  S  *  G  *  Y  *  L  C  S  M  T  Q  M  S  R  F  S  *  P  Q  Y  H  V  C  *  W :   F  S  S  P  H  P  G  M  Q  L  N  L  F  S  *  T  F  L  Y  V  F  G  I  S  K :   S  A  *  M  R  R  Y  E  P  M  L  M  R  H  L  E  H  *  A  L  T  D  L  G  L  S  K  T  L  F  L  S  R :   L  M  L  L  S  H  G  W  F  Y  I  Y  M  R  M  I  L  V  *  D  K  L  A  E  *  V  *  S  A  R  F  F  F  L  I  L  F  R  M  A  L  *  V  N  S  S  T  R  Q  N  T  L  K  S  I  A  P  L  M  E  I  D  G  I  T  A  V  F  N  S  H  W  F  S  S  D  H  R  Y  E  P  I  D  L  I  S  P  *  W  L  F  M  S  N  D  I  E  L  P  S  I  F  R  G  D  Y  E  D  F  L  R  E  L  A  R  Q  L  T  Q  N  L  A  A  R  V  D  R  Y  M  A  S  I  I  Q  V  R  I  L  F  S  N  L  A  F  G  E  T  L  K  V  C  M  S  L  Y  *  N  A  I  K  F  S  A  M  M  K  L  V  R  E  K  K  V  M  N  F  L  P  F  K  S  K  R  S  S  P  K  K  L  V  G  F  I  E  S  Y  S  Y  *  N  S  C  Q  I  L  V  L  *  N  F  Q  V  L  E  F  P  N  L  Q  K  V  V  V  G  I  L  P   </first_frame>
            <second_frame>  L  C  F  R  S  C  N  T  N  S  S  T  G  K  L  S  W  L  S  *  Y  W  *  T  R  T  T  P  :  C  I  T  G  C  I  S  S  I  L  *  M  C  W  *  S  G  N  G  E   : D  S  C  T  R  W  R  A  K  *  K  *  E  V  D  Q  P  Y  K  R  S  G  W  L  Y  F  H  K  K  T  K  R   : G  S  I  H  L  F  D  I  E  Q  C  A  G  S  I  F  K  I  S  T  G  I  S  C  C  S  F  V  R  V  L  A  P  Q  :  *  W  I  W  S  A  I  R  T  D  G  A  S  T  L  P  A  C  I  G  *  F  S  Y  C  *  A  P  L  F  K  R  A  C  P   : D  A  I  Y  P  C  S  P  V  Y  Y  S  N  P  R  G  D  I  S  F  A  R  *  L  R  *  V  G  S  V  N  R  S  I  M  F  A  D   : G  S  R  V  L  I  Q  G  C  S  *  T  C  S  P  E  P  F  Y  T  S  S  E  S  P   : R  V  H  E  *  E  D  T  S  Q  C  L  C  G  I  W  S  T  E  H  L  R  I  W  A  S  A  R  L  F  S  *  A   : G  S  C  C  F  P  T  D  G  F  T  S  T  *  G  *  S  *  C  E  T  S  L  P  S  K  F  N  L  P  D  F  F  F  L  Y  C  S  G  W  L  Y  E  L  T  L  Q  H  A  R  T  L  *  N  P  L  L  P  *  W  K  L  M  E  *  L  L  F  S  T  V  T  G  L  V  R  T  I  G  M  N  P  L  T  *  S  V  L  N  G  Y  S  *  V  M  I  L  S  C  L  Q  F  L  E  A  T  M  K  T  F  F  E  N  L  Q  G  N  *  L  K  I  L  L  P  E  *  I  G  T  W  H  Q  *  Y  R  S  V  F  F  F  L  I  L  H  L  E  K  L  *  R  Y  A  C  L  C  I  E  M  P  L  N  S  A  L  *  *  N  W  Y  E  K  K  K  L  *  I  S  Y  H  S  K  V  N  A  V  P  L  R  S  W  W  V  S  *  N  H  I  H  T  K  I  A  V  K  F  W  C  Y  K  I  F  K  C  L  N  F  R  I  F  R  K  *  *  *  A  Y  F  H  </second_frame>
            <third_frame>   Y  A  S  V  L  A  T  L  T  L  Q  L  G  S  C  H  G  L  A  S  T  G  E  L  E  P  L  R :   A  L  L  A  A  F  Q  A  F  C  E  C  V  G  D  L  E  M  G  K  :  I  L  A  R  D  G  E  Q  N  E  N  E  K  W  I  N  L  I  R  D  L  A  G  C  I  S  I  K  R  P  K  E  :  V  P  S  I  C  L  I  L  S  N  A  L  D  R  S  L  R  F  Q  R  E  S  A  A  A  A  L  S  E  F  L  R  H  S :   D  G  F  G  P  L  L  E  Q  M  V  Q  A  L  C  R  H  V  S  D  D  S  P  T  V  R  R  L  C  L  R  G  L  V  Q  :  M  P  S  I  H  V  L  Q  Y  T  T  Q  I  L  G  V  I  L  A  L  L  D  D  S  D  E  S  V  Q  L  T  A  V  S  C  L  L  M  :  V  L  E  S  S  S  R  D  A  V  E  P  V  L  L  N  L  S  I  R  L  R  N  L  Q  :  E  C  M  N  E  K  I  R  A  N  A  Y  A  A  F  G  A  L  S  T  Y  G  S  G  P  Q  Q  D  S  F  L  E  Q  :  A  H  A  A  F  P  R  M  V  L  H  L  H  E  D  D  L  S  V  R  Q  A  C  R  V  S  L  I  C  Q  I  F  F  S  Y  I  V  Q  D  G  F  M  S  *  L  F  N  T  P  E  H  F  E  I  H  C  S  L  D  G  N  *  W  N  N  C  C  F  Q  Q  S  L  V  *  F  G  P  S  V  *  T  H  *  L  D  Q  S  L  M  V  I  H  E  *  *  Y  *  V  A  F  N  F  *  R  R  L  *  R  L  S  S  R  T  C  K  A  T  N  S  K  S  C  C  P  S  R  *  V  H  G  I  N  N  T  G  P  Y  S  F  F  *  S  C  I  W  R  N  F  E  G  M  H  V  F  V  L  K  C  H  *  I  Q  R  Y  D  E  I  G  T  R  K  K  S  Y  E  F  P  T  I  Q  K  *  T  Q  F  P  *  E  A  G  G  F  H  R  I  I  F  I  L  K  *  L  S  N  F  G  V  I  K  F  S  S  A  *  I  S  E  S  S  E  S  S  S  R  H  T  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32208" stop="32126"/>
                    <exon start="32016" stop="31956"/>
                    <exon start="31861" stop="31766"/>
                    <exon start="31388" stop="31288"/>
                    <exon start="31175" stop="31070"/>
                    <exon start="30762" stop="30649"/>
                    <exon start="30569" stop="30495"/>
                    <exon start="29789" stop="29691"/>
                    <exon start="28894" stop="28763"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YASVLATLTLQLGSCHGLASTGELEPLRALLAAFQAFCECVGDLEMGKILARDGEQNENEKWINLIRDLAGCISIKRPKEVPSICLILSNALDRSLRFQRESAAAALSEFLRHSDGFGPLLEQMVQALCRHVSDDSPTVRRLCLRGLVQMPSIHVLQYTTQILGVILALLDDSDESVQLTAVSCLLMVLESSSRDAVEPVLLNLSIRLRNLQECMNEKIRANAYAAFGALSTYGSGPQQDSFLEQAHAAFPRMVLHLHEDDLSVRQACRVSLICQIFFSYIVQDGFMS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28629" stop="28426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLFMSNDIELPSIFRGDYEDFLRELARQLTQNLAARVDRYMASIIQVRILFSNLAFGETLKVCMSLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28897" e_stop="28823"/>
            <exon e_start="28746" e_stop="28661"/>
            <exon e_start="28585" e_stop="28492"/>
            <exon e_start="27902" e_stop="27795"/>
            <exon e_start="27563" e_stop="27223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.747" e_score="0.987"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="0.907"/>
          <exon-intron don_prob="0.997" acc_prob="0.892" e_score="0.989"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="0.991"/>
          <exon-only e_score="0.839"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="28897" e_stop="28823" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.747">
            <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="28746" e_stop="28661" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="28585" e_stop="28492" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.892">
            <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="27902" e_stop="27795" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="27794" i_stop="27564" i_length="231"/>
          </intron>
          <exon e_serial="5" e_score="0.839">
            <gDNA_exon_boundary e_start="27563" e_stop="27223" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28897" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28492"/>
              <exon start="27902" stop="27795"/>
              <exon start="27563" stop="27223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA : AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG : AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG : GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATATCATCCCATTACTACAATCAG : GTTTTCGGGATGCTTGTTGGCAAAATGAGTCGTTCAACAGATGCAATCGTTAGAGCAACTTGTTCTTCAGCTCTAGGCTTGTTGCTCAAATCATCAAACGCAAGCTCATGGAAAGACATTCGACTTGATCGAGCTGATTCATCACATAGGGGCCATGAACCAGAATCTGCCAGGAGATTATGATTCACGATTAGTATAAACTTACACGCGATACTCTCAATCGCTCTGATATCGATCTACATTGTACAGATCCAAATTATAATGTGTTTATTTCTGCAAGGATTCCATTCTTTTTGTGTACATTATTAGTGCTGTATAAAAGGTTTAGCTTCTTATTATAT</gDNA_template>
            <first_frame> Q  A  H  A  A  F  P  R  M  V  L  H  L  H  E  D  D  L  S  V  R  Q  A  C  R  :  N  T  L  K  S  I  A  P  L  M  E  I  D  G  I  T  A  V  F  N  S  H  W  F  S  S  D  H  R :   G  D  Y  E  D  F  L  R  E  L  A  R  Q  L  T  Q  N  L  A  A  R  V  D  R  Y  M  A  S  I  I  Q  :  A  F  D  A  P  W  P  V  V  Q  A  N  A  V  Y  L  C  S  S  V  L  S  L  S  D  D  K  H  I  S  S  H  Y  Y  N  Q  :  V  F  G  M  L  V  G  K  M  S  R  S  T  D  A  I  V  R  A  T  C  S  S  A  L  G  L  L  L  K  S  S  N  A  S  S  W  K  D  I  R  L  D  R  A  D  S  S  H  R  G  H  E  P  E  S  A  R  R  L  *  F  T  I  S  I  N  L  H  A  I  L  S  I  A  L  I  S  I  Y  I  V  Q  I  Q  I  I  M  C  L  F  L  Q  G  F  H  S  F  C  V  H  Y  *  C  C  I  K  G  L  A  S  Y  Y   </first_frame>
            <second_frame>  R  L  M  L  L  S  H  G  W  F  Y  I  Y  M  R  M  I  L  V  *  D  K  L  A  E :   T  L  *  N  P  L  L  P  *  W  K  L  M  E  *  L  L  F  S  T  V  T  G  L  V  R  T  I   : E  A  T  M  K  T  F  F  E  N  L  Q  G  N  *  L  K  I  L  L  P  E  *  I  G  T  W  H  Q  *  Y  R :   H  L  M  L  L  G  Q  L  S  R  Q  M  R  F  I  Y  A  A  A  C  F  L  S  P  M  I  N  T  Y  H  P  I  T  T  I  R :   F  S  G  C  L  L  A  K  *  V  V  Q  Q  M  Q  S  L  E  Q  L  V  L  Q  L  *  A  C  C  S  N  H  Q  T  Q  A  H  G  K  T  F  D  L  I  E  L  I  H  H  I  G  A  M  N  Q  N  L  P  G  D  Y  D  S  R  L  V  *  T  Y  T  R  Y  S  Q  S  L  *  Y  R  S  T  L  Y  R  S  K  L  *  C  V  Y  F  C  K  D  S  I  L  F  V  Y  I  I  S  A  V  *  K  V  *  L  L  I  I  </second_frame>
            <third_frame>   G  S  C  C  F  P  T  D  G  F  T  S  T  *  G  *  S  *  C  E  T  S  L  P   : K  H  F  E  I  H  C  S  L  D  G  N  *  W  N  N  C  C  F  Q  Q  S  L  V  *  F  G  P  S  :  R  R  L  *  R  L  S  S  R  T  C  K  A  T  N  S  K  S  C  C  P  S  R  *  V  H  G  I  N  N  T   : G  I  *  C  S  L  A  S  C  P  G  K  C  G  L  F  M  Q  Q  R  A  F  S  L  R  *  *  T  H  I  I  P  L  L  Q  S   : G  F  R  D  A  C  W  Q  N  E  S  F  N  R  C  N  R  *  S  N  L  F  F  S  S  R  L  V  A  Q  I  I  K  R  K  L  M  E  R  H  S  T  *  S  S  *  F  I  T  *  G  P  *  T  R  I  C  Q  E  I  M  I  H  D  *  Y  K  L  T  R  D  T  L  N  R  S  D  I  D  L  H  C  T  D  P  N  Y  N  V  F  I  S  A  R  I  P  F  F  L  C  T  L  L  V  L  Y  K  R  F  S  F  L  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28897" stop="28823"/>
                    <exon start="28746" stop="28661"/>
                    <exon start="28585" stop="28492"/>
                    <exon start="27902" stop="27795"/>
                    <exon start="27563" stop="27381"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAHAAFPRMVLHLHEDDLSVRQACRNTLKSIAPLMEIDGITAVFNSHWFSSDHRGDYEDFLRELARQLTQNLAARVDRYMASIIQAFDAPWPVVQANAVYLCSSVLSLSDDKHISSHYYNQVFGMLVGKMSRSTDAIVRATCSSALGLLLKSSNASSWKDIRLDRADSSHRGHEPESARRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35531" PGL_stop="34428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35531" e_stop="35369"/>
            <exon e_start="35293" e_stop="35184"/>
            <exon e_start="35065" e_stop="34937"/>
            <exon e_start="34706" e_stop="34632"/>
            <exon e_start="34556" e_stop="34428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="0.988"/>
          <exon-intron don_prob="0.989" acc_prob="0.945" e_score="0.964"/>
          <exon-intron don_prob="0.815" acc_prob="0.984" e_score="0.984"/>
          <exon-intron don_prob="0.373" acc_prob="0.890" e_score="0.920"/>
          <exon-only e_score="0.822"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="35531" e_stop="35369" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="35368" i_stop="35294" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="35293" e_stop="35184" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.945">
            <gDNA_intron_boundary i_start="35183" i_stop="35066" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="35065" e_stop="34937" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.815" acc_prob="0.984">
            <gDNA_intron_boundary i_start="34936" i_stop="34707" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="0.920">
            <gDNA_exon_boundary e_start="34706" e_stop="34632" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.373" acc_prob="0.890">
            <gDNA_intron_boundary i_start="34631" i_stop="34557" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="0.822">
            <gDNA_exon_boundary e_start="34556" e_stop="34428" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35531" stop="35369"/>
              <exon start="35293" stop="35184"/>
              <exon start="35065" stop="34937"/>
              <exon start="34706" stop="34632"/>
              <exon start="34556" stop="34428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGACTACCAGAGGAAAAGAGGGTGTCTTGCAGCTCATGAGCTACTTTTCAAGTTTCGGATGATCTGCATCAGTGGATACTGTGCACTAGGCTGTCGAGGAACTTGCACTCACAGAGAGAAAACCGACCGTGCTATGCATCACACCTTATCTAATTTACCTT : CTGCATTTGCTTTACCAAGCCGCGATGCTTTGCGCTTGGGAGATCGTACAATGATGTATCTTCCACGATGTGTAGATACAAATTCTGAAGTTCGGAAAGTTTCTGTTCAG : ATCCTTCATCTGTATTTCAGTATATCTCTATCGCTTCCAAGGCCTGTTAACTCTAGTTTCAGCAATGACATTGAGTTATCCTATAGTGCTTTGTCTTCCCTTGAAGATGTTATATCTATCCTACGAAGT : GATGCTTCAATTGACCCATCAGAGGTGTTTAACAGGGTTGTTTCATCCGTTTGCATCTTGCTGACAAAGGATGAG : CTTGCTGCAGCTCTTCATGGTTGCTCAGGTGCTATATGTGACAAGGTCAAGCAATCTTCTGAAGGTGCTATCCAAGCAGTTAATGAGTTTGTTATGAAGAGAGGTAATGAGCTGAATGAGACAGATATT</gDNA_template>
            <first_frame> L  D  Y  Q  R  K  R  G  C  L  A  A  H  E  L  L  F  K  F  R  M  I  C  I  S  G  Y  C  A  L  G  C  R  G  T  C  T  H  R  E  K  T  D  R  A  M  H  H  T  L  S  N  L  P   : S  A  F  A  L  P  S  R  D  A  L  R  L  G  D  R  T  M  M  Y  L  P  R  C  V  D  T  N  S  E  V  R  K  V  S  V  Q  :  I  L  H  L  Y  F  S  I  S  L  S  L  P  R  P  V  N  S  S  F  S  N  D  I  E  L  S  Y  S  A  L  S  S  L  E  D  V  I  S  I  L  R  S  :  D  A  S  I  D  P  S  E  V  F  N  R  V  V  S  S  V  C  I  L  L  T  K  D  E  :  L  A  A  A  L  H  G  C  S  G  A  I  C  D  K  V  K  Q  S  S  E  G  A  I  Q  A  V  N  E  F  V  M  K  R  G  N  E  L  N  E  T  D  I </first_frame>
            <second_frame>  W  T  T  R  G  K  E  G  V  L  Q  L  M  S  Y  F  S  S  F  G  *  S  A  S  V  D  T  V  H  *  A  V  E  E  L  A  L  T  E  R  K  P  T  V  L  C  I  T  P  Y  L  I  Y  L  :  L  H  L  L  Y  Q  A  A  M  L  C  A  W  E  I  V  Q  *  C  I  F  H  D  V  *  I  Q  I  L  K  F  G  K  F  L  F  R :   S  F  I  C  I  S  V  Y  L  Y  R  F  Q  G  L  L  T  L  V  S  A  M  T  L  S  Y  P  I  V  L  C  L  P  L  K  M  L  Y  L  S  Y  E  V :   M  L  Q  L  T  H  Q  R  C  L  T  G  L  F  H  P  F  A  S  C  *  Q  R  M  S :   L  L  Q  L  F  M  V  A  Q  V  L  Y  V  T  R  S  S  N  L  L  K  V  L  S  K  Q  L  M  S  L  L  *  R  E  V  M  S  *  M  R  Q  I   </second_frame>
            <third_frame>   G  L  P  E  E  K  R  V  S  C  S  S  *  A  T  F  Q  V  S  D  D  L  H  Q  W  I  L  C  T  R  L  S  R  N  L  H  S  Q  R  E  N  R  P  C  Y  A  S  H  L  I  *  F  T  F :   C  I  C  F  T  K  P  R  C  F  A  L  G  R  S  Y  N  D  V  S  S  T  M  C  R  Y  K  F  *  S  S  E  S  F  C  S   : D  P  S  S  V  F  Q  Y  I  S  I  A  S  K  A  C  *  L  *  F  Q  Q  *  H  *  V  I  L  *  C  F  V  F  P  *  R  C  Y  I  Y  P  T  K   : *  C  F  N  *  P  I  R  G  V  *  Q  G  C  F  I  R  L  H  L  A  D  K  G  *   : A  C  C  S  S  S  W  L  L  R  C  Y  M  *  Q  G  Q  A  I  F  *  R  C  Y  P  S  S  *  *  V  C  Y  E  E  R  *  *  A  E  *  D  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35531" stop="35369"/>
                    <exon start="35293" stop="35184"/>
                    <exon start="35065" stop="34937"/>
                    <exon start="34706" stop="34632"/>
                    <exon start="34556" stop="34428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDYQRKRGCLAAHELLFKFRMICISGYCALGCRGTCTHREKTDRAMHHTLSNLPSAFALPSRDALRLGDRTMMYLPRCVDTNSEVRKVSVQILHLYFSISLSLPRPVNSSFSNDIELSYSALSSLEDVISILRSDASIDPSEVFNRVVSSVCILLTKDELAAALHGCSGAICDKVKQSSEGAIQAVNEFVMKRGNELNETDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="63321" PGL_stop="52501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63321" e_stop="63245"/>
            <exon e_start="63162" e_stop="63108"/>
            <exon e_start="63018" e_stop="62887"/>
            <exon e_start="61831" e_stop="61760"/>
            <exon e_start="59709" e_stop="59619"/>
            <exon e_start="59524" e_stop="59429"/>
            <exon e_start="55648" e_stop="55570"/>
            <exon e_start="55473" e_stop="55410"/>
            <exon e_start="52588" e_stop="52501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="0.989"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="0.969"/>
          <exon-intron don_prob="0.962" acc_prob="0.846" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.344" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63321" e_stop="63245" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.965">
            <gDNA_intron_boundary i_start="63244" i_stop="63163" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63162" e_stop="63108" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.929">
            <gDNA_intron_boundary i_start="63107" i_stop="63019" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="63018" e_stop="62887" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62886" i_stop="61832" i_length="1055"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="61831" e_stop="61760" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61759" i_stop="59710" i_length="2050"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="59709" e_stop="59619" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="59618" i_stop="59525" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="59524" e_stop="59429" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59428" i_stop="55649" i_length="3780"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="55648" e_stop="55570" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.846">
            <gDNA_intron_boundary i_start="55569" i_stop="55474" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="55473" e_stop="55410" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.344">
            <gDNA_intron_boundary i_start="55409" i_stop="52589" i_length="2821"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52588" e_stop="52501" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63321" stop="63245"/>
              <exon start="63162" stop="63108"/>
              <exon start="63018" stop="62887"/>
              <exon start="61831" stop="61760"/>
              <exon start="59709" stop="59619"/>
              <exon start="59524" stop="59429"/>
              <exon start="55648" stop="55570"/>
              <exon start="55473" stop="55410"/>
              <exon start="52588" stop="52501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTGTCCTCATTGGCGGATGATTCACTTATTGTACGAGAAGCATCAATGGCTGCTCTAAAGGAGATAACTTTCTT : AAATCCACTTCTGGTTCTTGATTGTTGCCTAACAGTATCAAGAGGTGGAAGACGG : AGGTTTGGGAATATAGCTGGTTTGTTTCAAGTGATGTCAGTGGCAATTCAAGCTCTGGATAAAGGAGATGTTGATCATAATTATCTGGCAAAGTTGGCCAAAATTGCTACTTCTGAGGTGATCTCAACCAAG : GAACTTAACGCTGACTGGCAAAGAGCTGCAGCTGGTGTACTTGTATCAATTGGTTCACATATGCCAGATCTG : ATGATGGAAGAAATATTCCTCCATCTTTCAGGGTCAAATTCAGCTCTTCCAGCCATGGTTCAAATTCTTGCAGATTTTGCATCAGCTGATG : CTTTGCAGTTTACTCCTCACCTAAAGGGTATACTGGCACGAGTAGTGCCCATTCTTGGAAATGTGAGGGACATCCACCGGCCAATTTTTGCAAATG : CATTCAAATGTTGGTGCCAATCTTGCTGGCAGTGCAGTGTAGACTTCCCTCTGTCTTCAGTTGTAGATGCTGATATCAT : GTCTTTCTTGAATTCCGCATTTGAACTATTATTGAGAGTTTGGGCAATTTCACGGGATCTGAAG : GTTCGCTTATCTTCTGTGGAAGCATTAGGGCAGATGGTTGGTCTTATTACTAGGACACAGCTGAAGGCAGCTTTGCCAAGACTTATTC</gDNA_template>
            <first_frame> L  V  S  S  L  A  D  D  S  L  I  V  R  E  A  S  M  A  A  L  K  E  I  T  F  L :   N  P  L  L  V  L  D  C  C  L  T  V  S  R  G  G  R  R  :  R  F  G  N  I  A  G  L  F  Q  V  M  S  V  A  I  Q  A  L  D  K  G  D  V  D  H  N  Y  L  A  K  L  A  K  I  A  T  S  E  V  I  S  T  K  :  E  L  N  A  D  W  Q  R  A  A  A  G  V  L  V  S  I  G  S  H  M  P  D  L  :  M  M  E  E  I  F  L  H  L  S  G  S  N  S  A  L  P  A  M  V  Q  I  L  A  D  F  A  S  A  D   : A  L  Q  F  T  P  H  L  K  G  I  L  A  R  V  V  P  I  L  G  N  V  R  D  I  H  R  P  I  F  A  N   : A  F  K  C  W  C  Q  S  C  W  Q  C  S  V  D  F  P  L  S  S  V  V  D  A  D  I  M :   S  F  L  N  S  A  F  E  L  L  L  R  V  W  A  I  S  R  D  L  K  :  V  R  L  S  S  V  E  A  L  G  Q  M  V  G  L  I  T  R  T  Q  L  K  A  A  L  P  R  L  I  </first_frame>
            <second_frame>  W  C  P  H  W  R  M  I  H  L  L  Y  E  K  H  Q  W  L  L  *  R  R  *  L  S   : *  I  H  F  W  F  L  I  V  A  *  Q  Y  Q  E  V  E  D  G :   G  L  G  I  *  L  V  C  F  K  *  C  Q  W  Q  F  K  L  W  I  K  E  M  L  I  I  I  I  W  Q  S  W  P  K  L  L  L  L  R  *  S  Q  P  R :   N  L  T  L  T  G  K  E  L  Q  L  V  Y  L  Y  Q  L  V  H  I  C  Q  I  * :   *  W  K  K  Y  S  S  I  F  Q  G  Q  I  Q  L  F  Q  P  W  F  K  F  L  Q  I  L  H  Q  L  M  :  L  C  S  L  L  L  T  *  R  V  Y  W  H  E  *  C  P  F  L  E  M  *  G  T  S  T  G  Q  F  L  Q  M  :  H  S  N  V  G  A  N  L  A  G  S  A  V  *  T  S  L  C  L  Q  L  *  M  L  I  S   : C  L  S  *  I  P  H  L  N  Y  Y  *  E  F  G  Q  F  H  G  I  *  R :   F  A  Y  L  L  W  K  H  *  G  R  W  L  V  L  L  L  G  H  S  *  R  Q  L  C  Q  D  L  F </second_frame>
            <third_frame>   G  V  L  I  G  G  *  F  T  Y  C  T  R  S  I  N  G  C  S  K  G  D  N  F  L  :  K  S  T  S  G  S  *  L  L  P  N  S  I  K  R  W  K  T   : E  V  W  E  Y  S  W  F  V  S  S  D  V  S  G  N  S  S  S  G  *  R  R  C  *  S  *  L  S  G  K  V  G  Q  N  C  Y  F  *  G  D  L  N  Q   : G  T  *  R  *  L  A  K  S  C  S  W  C  T  C  I  N  W  F  T  Y  A  R  S   : D  D  G  R  N  I  P  P  S  F  R  V  K  F  S  S  S  S  H  G  S  N  S  C  R  F  C  I  S  *  C :   F  A  V  Y  S  S  P  K  G  Y  T  G  T  S  S  A  H  S  W  K  C  E  G  H  P  P  A  N  F  C  K  C :   I  Q  M  L  V  P  I  L  L  A  V  Q  C  R  L  P  S  V  F  S  C  R  C  *  Y  H  :  V  F  L  E  F  R  I  *  T  I  I  E  S  L  G  N  F  T  G  S  E   : G  S  L  I  F  C  G  S  I  R  A  D  G  W  S  Y  Y  *  D  T  A  E  G  S  F  A  K  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63321" stop="63245"/>
                    <exon start="63162" stop="63108"/>
                    <exon start="63018" stop="62887"/>
                    <exon start="61831" stop="61760"/>
                    <exon start="59709" stop="59619"/>
                    <exon start="59524" stop="59429"/>
                    <exon start="55648" stop="55570"/>
                    <exon start="55473" stop="55410"/>
                    <exon start="52588" stop="52502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSSLADDSLIVREASMAALKEITFLNPLLVLDCCLTVSRGGRRRFGNIAGLFQVMSVAIQALDKGDVDHNYLAKLAKIATSEVISTKELNADWQRAAAGVLVSIGSHMPDLMMEEIFLHLSGSNSALPAMVQILADFASADALQFTPHLKGILARVVPILGNVRDIHRPIFANAFKCWCQSCWQCSVDFPLSSVVDADIMSFLNSAFELLLRVWAISRDLKVRLSSVEALGQMVGLITRTQLKAALPRLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="81090" PGL_stop="81482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81090" e_stop="81482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="81090" e_stop="81482" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81090" stop="81482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81097" stop="81482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGGTGAATTTTCAGGTGGTTATATGCATGGTGAGGGGACATATATTGGACCTGATAAAGTGATCTACAGGGGACGCTGGCGGTTTAACCTTAAACATGGTTTAGGATATCAAATGTATCCCAATGGGGATATTTTTGAAGGGTCCTGGATGCAAGGAACCCCTGAAGGACCGGGTAAGTATACATGGGATAACGGGAATGTCTACTTTGGAAACATGAAAGGAGGGAAAATATCAGGGAAAGGAACTCTCACTTGGATTAACGGAGATTCGTATGAAGGGAGCTGGTTAAATTGTGCAATGCATGGCGTCGGTATGTATACATGGAGTGATGGTAGCTGTTATATTGGTACATGGACACATAGTCTAAAGGATGGAAAAGGAACATTTTA</gDNA_template>
            <first_frame> *  W  *  I  F  R  W  L  Y  A  W  *  G  D  I  Y  W  T  *  *  S  D  L  Q  G  T  L  A  V  *  P  *  T  W  F  R  I  S  N  V  S  Q  W  G  Y  F  *  R  V  L  D  A  R  N  P  *  R  T  G  *  V  Y  M  G  *  R  E  C  L  L  W  K  H  E  R  R  E  N  I  R  E  R  N  S  H  L  D  *  R  R  F  V  *  R  E  L  V  K  L  C  N  A  W  R  R  Y  V  Y  M  E  *  W  *  L  L  Y  W  Y  M  D  T  *  S  K  G  W  K  R  N  I  L </first_frame>
            <second_frame>  D  G  E  F  S  G  G  Y  M  H  G  E  G  T  Y  I  G  P  D  K  V  I  Y  R  G  R  W  R  F  N  L  K  H  G  L  G  Y  Q  M  Y  P  N  G  D  I  F  E  G  S  W  M  Q  G  T  P  E  G  P  G  K  Y  T  W  D  N  G  N  V  Y  F  G  N  M  K  G  G  K  I  S  G  K  G  T  L  T  W  I  N  G  D  S  Y  E  G  S  W  L  N  C  A  M  H  G  V  G  M  Y  T  W  S  D  G  S  C  Y  I  G  T  W  T  H  S  L  K  D  G  K  G  T  F   </second_frame>
            <third_frame>   M  V  N  F  Q  V  V  I  C  M  V  R  G  H  I  L  D  L  I  K  *  S  T  G  D  A  G  G  L  T  L  N  M  V  *  D  I  K  C  I  P  M  G  I  F  L  K  G  P  G  C  K  E  P  L  K  D  R  V  S  I  H  G  I  T  G  M  S  T  L  E  T  *  K  E  G  K  Y  Q  G  K  E  L  S  L  G  L  T  E  I  R  M  K  G  A  G  *  I  V  Q  C  M  A  S  V  C  I  H  G  V  M  V  A  V  I  L  V  H  G  H  I  V  *  R  M  E  K  E  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81091" stop="81480"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGEFSGGYMHGEGTYIGPDKVIYRGRWRFNLKHGLGYQMYPNGDIFEGSWMQGTPEGPGKYTWDNGNVYFGNMKGGKISGKGTLTWINGDSYEGSWLNCAMHGVGMYTWSDGSCYIGTWTHSLKDGKGTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="81673" PGL_stop="89053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81673" e_stop="81971"/>
            <exon e_start="83217" e_stop="83384"/>
            <exon e_start="84020" e_stop="84185"/>
            <exon e_start="85150" e_stop="85260"/>
            <exon e_start="86100" e_stop="86287"/>
            <exon e_start="87237" e_stop="87394"/>
            <exon e_start="87927" e_stop="88086"/>
            <exon e_start="88529" e_stop="89053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.386" acc_prob="0.869" e_score="0.977"/>
          <exon-intron don_prob="0.872" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="81673" e_stop="81971" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.386" acc_prob="0.869">
            <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83217" e_stop="83384" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84020" e_stop="84185" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.680">
            <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85150" e_stop="85260" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86100" e_stop="86287" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87237" e_stop="87394" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87927" e_stop="88086" e_length="160"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88529" e_stop="89053" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81673" stop="81971"/>
              <exon start="83217" stop="83366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81829" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81829" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81890" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81890" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81932" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84034" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84105" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84133" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85197" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85198" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85198" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85209" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86101" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87950" stop="88086"/>
              <exon start="88529" stop="88975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87956" stop="88086"/>
              <exon start="88529" stop="89053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88052" stop="88086"/>
              <exon start="88529" stop="88732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88694" stop="89053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201180" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACCTACAAATGTTTCTCTGGAAAGACGATGGAGTCTTGAAGTAGCCATTGAGAAAGTTATTGGTCATAATTTAGATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG : ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG : GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG : GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG : TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG : GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG : AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG : ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</gDNA_template>
            <first_frame> R  P  T  N  V  S  L  E  R  R  W  S  L  E  V  A  I  E  K  V  I  G  H  N  L  D  G  D  M  E  D  A  M  S  A  P  I  L  E  R  E  Y  M  Q  G  I  L  I  S  E  V  V  L  N  E  R  F  S  P  P  S  G  R  A  R  R  R  Q  K  R  F  V  R  E  L  K  R  P  G  E  A  I  I  K  G  H  R  S  Y  D  L  M  L  S  L  Q  L  G  I  R :   Y  T  V  G  K  I  T  P  I  Q  R  R  D  I  R  T  S  D  F  G  P  R  A  S  F  W  M  Y  F  P  K  G  G  S  Q  L  T  P  T  H  Q  S  E  D  F  K  W  K  D  Y  C  P  M  V  F  R :   N  L  R  E  M  F  K  I  D  A  A  D  Y  M  M  S  I  C  G  N  D  A  L  R  E  L  S  S  P  G  K  S  G  S  V  F  F  L  S  Q  D  D  R  F  M  I  K  T  L  R  K  S  E  V  K  :  V  L  L  R  M  L  P  N  Y  H  R  H  V  K  T  Y  E  N  T  L  I  T  K  F  F  G  L  H  R  I  K  P  S  S  G  Q  K  :  F  R  F  V  V  M  G  N  M  F  C  T  E  L  R  I  H  R  R  F  D  L  K  G  S  S  L  G  R  S  A  D  K  V  E  I  D  E  N  T  I  L  K  D  L  D  L  N  Y  C  F  Y  L  E  P  S  W  R  E  A  L  L  R :   Q  I  E  I  D  S  K  F  L  E  E  E  N  I  M  D  Y  S  L  L  L  G  V  H  Y  R  A  P  Q  H  L  Q  S  L  I  S  C  S  G  R  T  T  A  D  G  L  E  I  V  A  E  E   : E  S  L  E  D  E  I  S  P  Q  G  L  V  L  V  P  R  G  S  D  D  S  V  V  V  G  P  H  V  R  G  S  R  L  R  A  S  S  A  T  G  D  A  E  V  D  L  L  L  P  G  T  A  R :   F  Q  I  Q  L  G  V  N  M  P  A  R  A  E  Y  I  P  K  E  G  E  T  Q  V  F  H  E  V  Y  D  V  V  L  Y  L  G  I  I  D  I  L  Q  E  Y  N  M  S  K  K  L  E  H  A  Y  K  S  I  Q  F  D  S  V  S  I  S  A  V  D  P  T  Y  Y  S  E  R  F  L  E  F  I  R  K  V  F  P  T  Y  A  V  A  T  *  T  V  S  L  A  V  S  G  Y  H  G  R  D  T  Q  L  L  F  V  I  Y  *  R  V  Y  N  A  D  Y  G  F  V  V  D  S  N  F  F  T  S  C  *  I  Q  N  H  S  R  R  L  M  C  *  K  D  S  L  Y  T  P  K  T  E  I  L  E  V  A  F  F  *  S  *  D  L  K  S  N  K  L  L  L   </first_frame>
            <second_frame>  D  L  Q  M  F  L  W  K  D  D  G  V  L  K  *  P  L  R  K  L  L  V  I  I  *  M  E  T  W  R  M  L  *  V  L  Q  F  W  K  E  S  T  C  K  A  S  *  S  V  R  L  S  *  M  S  V  F  H  H  H  L  G  E  P  E  G  G  K  R  D  L  *  G  N  *  R  D  Q  V  K  Q  S  *  R  V  T  G  V  M  I  *  C  *  V  Y  S  L  G  L   : D  T  L  W  G  K  L  H  L  Y  K  D  E  I  Y  E  L  Q  I  L  V  H  V  L  A  F  G  C  I  F  Q  K  E  D  L  S  *  H  L  H  T  S  L  K  I  S  S  G  K  I  I  A  Q  W  S  S   : G  I  *  G  R  C  S  R  L  M  L  L  I  T  *  C  Q  F  V  E  M  M  P  L  E  S  F  L  L  L  E  K  V  A  V  Y  F  S  C  L  K  M  T  V  S  *  L  R  H  Y  V  N  L  K  L  R :   F  C  C  G  C  F  R  I  I  I  A  M  S  R  H  M  R  I  L  S  S  L  N  F  L  D  F  T  G  *  N  L  P  V  D  K  S :   S  A  L  *  *  W  E  I  C  F  V  R  S  *  E  S  T  E  D  L  I  L  K  V  L  H  *  D  D  L  L  I  R  L  K  L  T  R  T  L  Y  L  R  I  *  I  *  T  T  A  F  I  *  S  L  L  G  A  K  L  Y  *   : G  R  S  K  L  T  V  N  S  W  R  K  R  T  L  W  I  T  A  S  C  *  V  F  I  I  E  H  L  N  T  Y  N  L  S  F  R  V  V  D  A  P  R  Q  M  D  *  K  L  L  Q  K  K  :  S  L  W  R  M  K  Y  R  P  R  A  L  F  W  S  H  V  E  V  M  I  V  S  L  W  V  R  M  S  E  A  A  D  Y  E  R  H  L  L  P  V  T  R  K  W  T  S  S  S  P  G  Q  Q   : D  S  K  F  S  L  G  *  I  C  Q  Q  G  R  S  T  Y  Q  K  K  V  K  H  R  C  S  T  K  Y  M  T  L  C  Y  T  W  G  S  L  I  Y  C  K  N  T  T  *  A  R  S  *  N  M  H  T  N  R  F  S  L  I  L  F  P  F  L  Q  L  T  Q  R  T  T  R  R  G  S  W  S  S  F  E  R  S  S  L  H  M  L  *  Q  L  E  Q  Y  P  *  L  L  A  V  T  M  A  E  T  H  S  C  C  L  *  F  I  E  E  C  I  M  R  I  M  D  L  *  L  I  A  I  S  L  Q  V  V  E  S  K  I  I  A  D  D  *  C  V  K  K  I  A  C  I  H  L  K  Q  R  F  *  K  L  L  F  F  N  L  R  I  *  K  A  I  S  C  F  *  </second_frame>
            <third_frame>   T  Y  K  C  F  S  G  K  T  M  E  S  *  S  S  H  *  E  S  Y  W  S  *  F  R  W  R  H  G  G  C  Y  E  C  S  N  F  G  K  R  V  H  A  R  H  P  N  Q  *  G  C  L  K  *  A  F  F  T  T  I  W  E  S  Q  K  E  A  K  E  I  C  K  G  I  K  E  T  R  *  S  N  H  K  G  S  Q  E  L  *  F  N  A  K  S  T  A  W  D  *  :  I  H  C  G  E  N  Y  T  Y  T  K  T  R  Y  T  N  F  R  F  W  S  T  C  *  L  L  D  V  F  S  K  R  R  I  S  V  D  T  Y  T  P  V  *  R  F  Q  V  E  R  L  L  P  N  G  L  Q  :  E  S  E  G  D  V  Q  D  *  C  C  *  L  H  D  V  N  L  W  K  *  C  P  *  R  A  F  F  S  W  K  K  W  Q  C  I  F  P  V  S  R  *  P  F  H  D  *  D  I  T  *  I  *  S  *   : G  F  A  A  D  A  S  E  L  S  S  P  C  Q  D  I  *  E  Y  S  H  H  *  I  F  W  T  S  Q  D  K  T  F  Q  W  T  K   : V  P  L  C  S  N  G  K  Y  V  L  Y  G  V  E  N  P  P  K  I  *  S  *  R  F  F  T  R  T  I  C  *  *  G  *  N  *  R  E  H  Y  T  *  G  S  R  F  E  L  L  L  L  S  R  A  F  L  A  R  S  F  I  K  :  A  D  R  N  *  Q  *  I  L  G  G  R  E  H  Y  G  L  Q  P  L  V  R  C  S  L  *  S  T  S  T  P  T  I  S  H  F  V  *  W  T  H  H  G  R  W  T  R  N  C  C  R  R  R :   V  S  G  G  *  N  I  A  P  G  P  C  F  G  P  T  W  K  *  *  *  C  R  C  G  S  A  C  Q  R  Q  P  I  T  S  V  I  C  Y  R  *  R  G  S  G  P  P  P  P  R  D  S  K  :  I  P  N  S  A  W  G  E  Y  A  S  K  G  G  V  H  T  K  R  R  *  N  T  G  V  P  R  S  I  *  R  C  V  I  P  G  D  H  *  Y  I  A  R  I  Q  H  E  Q  E  V  R  T  C  I  Q  I  D  S  V  *  F  C  F  H  F  C  S  *  P  N  V  L  L  G  E  V  L  G  V  H  S  K  G  L  P  Y  I  C  C  S  N  L  N  S  I  L  S  C  *  R  L  P  W  Q  R  H  T  A  A  V  C  N  L  L  K  S  V  *  C  G  L  W  I  C  S  *  *  Q  F  L  Y  K  L  L  N  P  K  S  *  Q  T  I  D  V  L  K  R  *  L  V  Y  T  *  N  R  D  F  R  S  C  F  F  L  I  L  G  S  E  K  Q  *  A  A  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81673" stop="81971"/>
                    <exon start="83217" stop="83384"/>
                    <exon start="84020" stop="84185"/>
                    <exon start="85150" stop="85260"/>
                    <exon start="86100" stop="86287"/>
                    <exon start="87237" stop="87394"/>
                    <exon start="87927" stop="88086"/>
                    <exon start="88529" stop="88805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPTNVSLERRWSLEVAIEKVIGHNLDGDMEDAMSAPILEREYMQGILISEVVLNERFSPPSGRARRRQKRFVRELKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPIQRRDIRTSDFGPRASFWMYFPKGGSQLTPTHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHRHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTILKDLDLNYCFYLEPSWREALLRQIEIDSKFLEEENIMDYSLLLGVHYRAPQHLQSLISCSGRTTADGLEIVAEEESLEDEISPQGLVLVPRGSDDSVVVGPHVRGSRLRASSATGDAEVDLLLPGTARFQIQLGVNMPARAEYIPKEGETQVFHEVYDVVLYLGIIDILQEYNMSKKLEHAYKSIQFDSVSISAVDPTYYSERFLEFIRKVFPTYAVAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84018" e_stop="84185"/>
            <exon e_start="85150" e_stop="85260"/>
            <exon e_start="86100" e_stop="86287"/>
            <exon e_start="87237" e_stop="87394"/>
            <exon e_start="87927" e_stop="88086"/>
            <exon e_start="88529" e_stop="89053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.680" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="84018" e_stop="84185" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.680">
            <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85150" e_stop="85260" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86100" e_stop="86287" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87237" e_stop="87394" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87927" e_stop="88086" e_length="160"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88529" e_stop="89053" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84018" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84018" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84034" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84105" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84133" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85197" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85198" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85198" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85209" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86101" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="88855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87950" stop="88086"/>
              <exon start="88529" stop="88975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87956" stop="88086"/>
              <exon start="88529" stop="89053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88052" stop="88086"/>
              <exon start="88529" stop="88732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88694" stop="89053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201180" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG : GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG : TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG : GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG : AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG : ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAA</gDNA_template>
            <first_frame> R  N  L  R  E  M  F  K  I  D  A  A  D  Y  M  M  S  I  C  G  N  D  A  L  R  E  L  S  S  P  G  K  S  G  S  V  F  F  L  S  Q  D  D  R  F  M  I  K  T  L  R  K  S  E  V  K  :  V  L  L  R  M  L  P  N  Y  H  R  H  V  K  T  Y  E  N  T  L  I  T  K  F  F  G  L  H  R  I  K  P  S  S  G  Q  K  :  F  R  F  V  V  M  G  N  M  F  C  T  E  L  R  I  H  R  R  F  D  L  K  G  S  S  L  G  R  S  A  D  K  V  E  I  D  E  N  T  I  L  K  D  L  D  L  N  Y  C  F  Y  L  E  P  S  W  R  E  A  L  L  R :   Q  I  E  I  D  S  K  F  L  E  E  E  N  I  M  D  Y  S  L  L  L  G  V  H  Y  R  A  P  Q  H  L  Q  S  L  I  S  C  S  G  R  T  T  A  D  G  L  E  I  V  A  E  E   : E  S  L  E  D  E  I  S  P  Q  G  L  V  L  V  P  R  G  S  D  D  S  V  V  V  G  P  H  V  R  G  S  R  L  R  A  S  S  A  T  G  D  A  E  V  D  L  L  L  P  G  T  A  R :   F  Q  I  Q  L  G  V  N  M  P  A  R  A  E  Y  I  P  K  E  G  E  T  Q  V  F  H  E  V  Y  D  V  V  L  Y  L  G  I  I  D  I  L  Q  E  Y  N  M  S  K  K  L  E  H  A  Y  K  S  I  Q  F  D  S  V  S  I  S  A  V  D  P  T  Y  Y  S  E  R  F  L  E  F  I  R  K  V  F  P  T  Y  A  V  A  T  *  T  V  S  L  A  V  S  G  Y  H  G  R  D  T  Q  L  L  F  V  I  Y  *  R  V  Y  N  A  D  Y  G  F  V  V  D  S  N  F  F  T  S  C  *  I  Q  N  H  S  R  R  L  M  C  *  K  D  S  L  Y  T  P  K  T  E  I  L  E  V  A  F  F  *  S  *  D  L  K  S  N  K  L  L  L   </first_frame>
            <second_frame>  G  I  *  G  R  C  S  R  L  M  L  L  I  T  *  C  Q  F  V  E  M  M  P  L  E  S  F  L  L  L  E  K  V  A  V  Y  F  S  C  L  K  M  T  V  S  *  L  R  H  Y  V  N  L  K  L  R :   F  C  C  G  C  F  R  I  I  I  A  M  S  R  H  M  R  I  L  S  S  L  N  F  L  D  F  T  G  *  N  L  P  V  D  K  S :   S  A  L  *  *  W  E  I  C  F  V  R  S  *  E  S  T  E  D  L  I  L  K  V  L  H  *  D  D  L  L  I  R  L  K  L  T  R  T  L  Y  L  R  I  *  I  *  T  T  A  F  I  *  S  L  L  G  A  K  L  Y  *   : G  R  S  K  L  T  V  N  S  W  R  K  R  T  L  W  I  T  A  S  C  *  V  F  I  I  E  H  L  N  T  Y  N  L  S  F  R  V  V  D  A  P  R  Q  M  D  *  K  L  L  Q  K  K  :  S  L  W  R  M  K  Y  R  P  R  A  L  F  W  S  H  V  E  V  M  I  V  S  L  W  V  R  M  S  E  A  A  D  Y  E  R  H  L  L  P  V  T  R  K  W  T  S  S  S  P  G  Q  Q   : D  S  K  F  S  L  G  *  I  C  Q  Q  G  R  S  T  Y  Q  K  K  V  K  H  R  C  S  T  K  Y  M  T  L  C  Y  T  W  G  S  L  I  Y  C  K  N  T  T  *  A  R  S  *  N  M  H  T  N  R  F  S  L  I  L  F  P  F  L  Q  L  T  Q  R  T  T  R  R  G  S  W  S  S  F  E  R  S  S  L  H  M  L  *  Q  L  E  Q  Y  P  *  L  L  A  V  T  M  A  E  T  H  S  C  C  L  *  F  I  E  E  C  I  M  R  I  M  D  L  *  L  I  A  I  S  L  Q  V  V  E  S  K  I  I  A  D  D  *  C  V  K  K  I  A  C  I  H  L  K  Q  R  F  *  K  L  L  F  F  N  L  R  I  *  K  A  I  S  C  F  *  </second_frame>
            <third_frame>   E  S  E  G  D  V  Q  D  *  C  C  *  L  H  D  V  N  L  W  K  *  C  P  *  R  A  F  F  S  W  K  K  W  Q  C  I  F  P  V  S  R  *  P  F  H  D  *  D  I  T  *  I  *  S  *   : G  F  A  A  D  A  S  E  L  S  S  P  C  Q  D  I  *  E  Y  S  H  H  *  I  F  W  T  S  Q  D  K  T  F  Q  W  T  K   : V  P  L  C  S  N  G  K  Y  V  L  Y  G  V  E  N  P  P  K  I  *  S  *  R  F  F  T  R  T  I  C  *  *  G  *  N  *  R  E  H  Y  T  *  G  S  R  F  E  L  L  L  L  S  R  A  F  L  A  R  S  F  I  K  :  A  D  R  N  *  Q  *  I  L  G  G  R  E  H  Y  G  L  Q  P  L  V  R  C  S  L  *  S  T  S  T  P  T  I  S  H  F  V  *  W  T  H  H  G  R  W  T  R  N  C  C  R  R  R :   V  S  G  G  *  N  I  A  P  G  P  C  F  G  P  T  W  K  *  *  *  C  R  C  G  S  A  C  Q  R  Q  P  I  T  S  V  I  C  Y  R  *  R  G  S  G  P  P  P  P  R  D  S  K  :  I  P  N  S  A  W  G  E  Y  A  S  K  G  G  V  H  T  K  R  R  *  N  T  G  V  P  R  S  I  *  R  C  V  I  P  G  D  H  *  Y  I  A  R  I  Q  H  E  Q  E  V  R  T  C  I  Q  I  D  S  V  *  F  C  F  H  F  C  S  *  P  N  V  L  L  G  E  V  L  G  V  H  S  K  G  L  P  Y  I  C  C  S  N  L  N  S  I  L  S  C  *  R  L  P  W  Q  R  H  T  A  A  V  C  N  L  L  K  S  V  *  C  G  L  W  I  C  S  *  *  Q  F  L  Y  K  L  L  N  P  K  S  *  Q  T  I  D  V  L  K  R  *  L  V  Y  T  *  N  R  D  F  R  S  C  F  F  L  I  L  G  S  E  K  Q  *  A  A  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84018" stop="84185"/>
                    <exon start="85150" stop="85260"/>
                    <exon start="86100" stop="86287"/>
                    <exon start="87237" stop="87394"/>
                    <exon start="87927" stop="88086"/>
                    <exon start="88529" stop="88805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHRHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTILKDLDLNYCFYLEPSWREALLRQIEIDSKFLEEENIMDYSLLLGVHYRAPQHLQSLISCSGRTTADGLEIVAEEESLEDEISPQGLVLVPRGSDDSVVVGPHVRGSRLRASSATGDAEVDLLLPGTARFQIQLGVNMPARAEYIPKEGETQVFHEVYDVVLYLGIIDILQEYNMSKKLEHAYKSIQFDSVSISAVDPTYYSERFLEFIRKVFPTYAVAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="93479" PGL_stop="88990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93479" e_stop="93151"/>
            <exon e_start="92048" e_stop="91972"/>
            <exon e_start="90251" e_stop="90186"/>
            <exon e_start="90025" e_stop="89951"/>
            <exon e_start="89852" e_stop="89778"/>
            <exon e_start="89664" e_stop="88990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93479" e_stop="93151" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.590">
            <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92048" e_stop="91972" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90251" e_stop="90186" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.883">
            <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90025" e_stop="89951" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89852" e_stop="89778" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.958">
            <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.899">
            <gDNA_exon_boundary e_start="89664" e_stop="88990" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93479" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93479" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="90010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93475" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93469" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93469" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93468" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93466" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93466" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93448" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93446" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93446" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93356" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92029" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90239" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89964" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="89070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89551" stop="88990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89527" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89357" stop="89013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89275" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG : TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG : ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG : AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG : GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT : TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAAATCTCTG</gDNA_template>
            <first_frame> E  R  N  G  Q  R  M  G  F  E  A  G  K  R  R  R  R  L  C  P  E  R  G  N  R  P  P  *  A  V  A  P  A  G  F  R  N  H  R  P  R  K  R  S  L  F  H  A  K  S  S  R  K  L  *  M  *  A  L  L  D  V  T  Q  Q  *  R  E  L  L  G  S  H  S  R  K  T  A  S  D  *  F  S  *  K  S  C  S  *  S  *  G  C  S  C  S  T  S  A  S  *  A  Q  S  Y  S  Q  K  K  C :   *  N  W  *  A  W  L  P  S  D  Q  A  I  *  S  G  N  K  T  K  I  S  F  I  P   : D  *  I  S  *  D  *  R  Q  H  K  A  K  A  P  I  H  V  L  I  R  A   : E  N  P  T  I  *  Q  K  I  S  V  S  S  V  C  C  *  T  I  *  D  H  F  I  *   : G  S  K  H  *  D  *  Q  I  N  S  Q  V  F  L  A  L  G  S  R  F  E  N  V  H   : F  A  V  I  L  Q  D  *  A  T  G  D  *  Q  A  T  N  C  S  Y  R  Q  R  V  V  S  T  R  C  L  I  Q  A  S  T  S  T  T  P  S  S  T  S  T  S  T  T  R  S  S  S  W  S  S  K  S  S  T  Q  R  P  T  I  W  I  N  A  S  T  P  S  P  Y  G  *  R  T  *  T  Y  A  T  R  R  *  L  T  C  P  T  T  S  S  R  W  W  W  S  Y  G  *  F  H  S  R  W  T  H  G  *  T  S  N  D  A  S  T  R  F  S  R  S  T  T  D  A  R  P  R  N  A  P  T  T  S  T  T  Q  H  G  L  M  N  R  S  H  R  T  Y  L  *  L  H  G  T  K  I  R  L  F  V  L  I  F  E  F  V  V  F  V  H  L  N  L  S  K  S  F  M  L  P  E  T  V  V  S  V  R  P  T  R  L  S  L  K  A  F  E  N  V  I  E  Y  H  F  K  S  S  L  L  L  F  R  S  *  D  *  K  K  A  T  S  K  I  S  </first_frame>
            <second_frame>  N  E  M  D  R  E  W  G  S  K  P  G  S  G  G  A  A  S  A  Q  N  E  A  I  D  R  R  E  R  L  R  R  L  A  L  E  T  I  D  L  A  K  D  P  Y  F  M  R  N  H  L  G  S  Y  E  C  K  L  C  L  T  L  H  N  N  E  G  N  Y  L  A  H  T  Q  G  K  R  H  Q  T  N  L  A  K  R  A  A  R  E  A  K  D  A  P  A  Q  P  Q  P  H  K  R  K  V  T  L  K  R  N   : V  K  I  G  R  P  G  Y  R  V  T  K  Q  F  D  P  E  T  K  Q  R  S  L  L  F  Q  :  I  E  Y  P  E  I  E  D  N  T  K  P  R  H  R  F  M  S  S  F  E  Q  :  K  I  Q  P  F  D  K  R  Y  Q  F  L  L  F  A  A  E  P  Y  E  I  I  S  F  K  :  V  P  S  T  E  I  D  K  S  T  P  K  F  F  S  H  W  D  P  D  S  K  M  F  T  :  L  Q  L  Y  F  K  T  K  P  L  E  T  N  K  P  P  T  A  P  T  D  N  G  L  S  A  P  G  A  S  S  R  P  L  P  P  P  P  Q  A  P  P  P  P  P  P  Q  G  L  P  P  G  A  P  N  P  P  P  R  G  P  P  S  G  S  M  P  P  P  P  P  L  M  G  N  G  P  R  P  M  P  P  G  G  N  L  P  A  P  P  P  P  P  V  G  G  G  A  M  A  N  F  T  P  G  G  H  M  G  R  P  P  M  M  P  P  Q  G  F  P  G  Q  Q  Q  M  Q  G  Q  G  M  R  P  P  P  P  P  P  N  M  G  *  *  T  E  V  I  E  P  T  F  N  C  M  V  R  K  F  D  F  S  C  *  F  L  S  L  W  F  S  S  I  *  I  F  Q  N  H  L  C  C  Q  K  L  L  Y  L  L  G  R  L  V  Y  L  *  R  L  L  R  M  *  *  N  T  I  L  K  A  A  Y  C  F  S  D  P  K  I  K  K  K  Q  L  L  K  S  L </second_frame>
            <third_frame>   T  K  W  T  E  N  G  V  R  S  R  E  A  A  A  P  P  L  P  R  T  R  Q  S  T  A  V  S  G  C  A  G  W  L  *  K  P  *  T  S  Q  K  I  L  I  S  C  E  I  I  S  E  A  M  N  V  S  F  A  *  R  Y  T  T  M  K  G  I  T  W  L  T  L  K  E  N  G  I  R  L  I  *  L  K  E  L  L  V  K  L  R  M  L  L  L  N  L  S  L  I  S  A  K  L  L  S  K  E  M  :  L  K  L  V  G  L  A  T  E  *  P  S  N  L  I  R  K  Q  N  K  D  L  F  Y  S  R :   L  N  I  L  R  L  K  T  T  Q  S  Q  G  T  D  S  C  P  H  S  S  R :   K  S  N  H  L  T  K  D  I  S  F  F  C  L  L  L  N  H  M  R  S  F  H  L  R :   F  Q  A  L  R  L  T  N  Q  L  P  S  F  S  R  I  G  I  Q  I  R  K  C  S  L :   C  S  Y  T  S  R  L  S  H  W  R  L  T  S  H  Q  L  L  L  Q  T  T  G  C  Q  H  Q  V  P  H  P  G  L  Y  L  H  H  P  K  L  H  L  H  L  H  H  K  V  F  L  L  E  L  Q  I  L  H  P  E  A  H  H  L  D  Q  C  L  H  P  L  P  L  W  V  T  D  L  D  L  C  H  Q  E  V  T  Y  L  P  H  H  L  L  P  L  V  V  E  L  W  L  I  S  L  Q  V  D  T  W  V  D  L  Q  *  C  L  H  K  V  F  Q  V  N  N  R  C  K  A  K  E  C  A  H  H  L  H  H  P  T  W  V  D  E  P  K  S  *  N  L  P  L  I  A  W  Y  E  N  S  T  F  R  A  D  F  *  V  C  G  F  R  P  F  K  S  F  K  I  I  Y  V  A  R  N  C  C  I  C  *  A  D  S  F  I  F  E  G  F  *  E  C  N  R  I  P  F  *  K  Q  L  I  A  F  Q  I  L  R  L  K  K  S  N  F  *  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93478" stop="93151"/>
                    <exon start="92048" stop="91972"/>
                    <exon start="90251" stop="90186"/>
                    <exon start="90025" stop="89951"/>
                    <exon start="89852" stop="89778"/>
                    <exon start="89664" stop="89242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLKRNVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSFEQKIQPFDKRYQFLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPLETNKPPTAPTDNGLSAPGASSRPLPPPPQAPPPPPPQGLPPGAPNPPPRGPPSGSMPPPPPLMGNGPRPMPPGGNLPAPPPPPVGGGAMANFTPGGHMGRPPMMPPQGFPGQQQMQGQGMRPPPPPPNMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="99170" PGL_stop="104559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99170" e_stop="99498"/>
            <exon e_start="100824" e_stop="100892"/>
            <exon e_start="101816" e_stop="101881"/>
            <exon e_start="102948" e_stop="103069"/>
            <exon e_start="103688" e_stop="103816"/>
            <exon e_start="104225" e_stop="104559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.777" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99170" e_stop="99498" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100824" e_stop="100892" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101816" e_stop="101881" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102948" e_stop="103069" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.777" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103688" e_stop="103816" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.934">
            <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408"/>
          </intron>
          <exon e_serial="6" e_score="0.896">
            <gDNA_exon_boundary e_start="104225" e_stop="104559" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99170" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103069"/>
              <exon start="103688" stop="103816"/>
              <exon start="104225" stop="104431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99179" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103069"/>
              <exon start="103688" stop="103816"/>
              <exon start="104225" stop="104352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99203" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103069"/>
              <exon start="103688" stop="103747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99204" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99208" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103069"/>
              <exon start="103688" stop="103706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99309" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102980" stop="103069"/>
              <exon start="103688" stop="103816"/>
              <exon start="104225" stop="104559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG : GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG : CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG : TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA : GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAG : ATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</gDNA_template>
            <first_frame> E  K  V  V  N  H  A  K  S  F  L  N  T  F  T  W  P  S  V  F  L  S  V  A  I  V  S  L  L  H  S  F  *  R  E  K  V  Q  S  F  C  V  E  L  E  G  E  R  E  R  V  E  L  R  K  E  E  F  A  D  G  S  I  D  G  D  D  G  A  E  Q  Q  Q  L  R  S  V  I  *  D  L  V  D  R  R  F  W  S  W  K  E  *  L  A  C  *  L  H  F  *  C  R  *  R  S  G  P  Y  H  W :   R  *  F  *  D  Q  D  T  H  C  *  W  E  K  T  E  A  Y  H  L  G  H  S :   W  A  G  E  V  Q  D  T  D  K  L  L  L  Q  R  C  S  R  D  H  S  C :   L  *  C  N  K  K  R  D  L  H  K  P  V  *  C  V  G  K  R  G  G  A  V  *  *  *  S  G  L  C  K  D  A  G  W  K  *  S  *  Q   : R  I  R  E  S  C  D  Q  G  R  R  H  C  L  S  E  G  T  W  R  S  I  S  *  M  *  C  *  N  S  R  K  C  A  K  L  L  *  R  A  C  L  K   : D  N  G  G  A  *  S  P  *  R  R  I  H  C  R  E  E  K  Y  L  E  T  E  T  R  T  A  N  T  T  G  R  W  W  L  L  L  M  I  K  K  I  V  H  *  M  V  H  I  S  N  M  Y  M  L  F  S  F  L  L  Y  C  F  Y  L  A  A  A  L  K  V  V  S  S  L  M  *  S  N  *  S  M  L  V  I  D  Q  C  S  C  *  Y  L  P  D  C  C  Q  I  G  W  Y  F  I  I  L  M  C  I  S  S  V </first_frame>
            <second_frame>  R  K  *  *  I  M  P  K  A  F  *  I  L  L  L  G  P  L  Y  F  S  L  S  P  L  C  H  C  C  I  V  S  R  E  R  K  C  R  V  F  V  L  N  W  K  E  R  E  R  E  L  S  *  G  R  R  S  S  P  M  G  P  S  T  A  T  T  G  Q  S  N  S  S  Y  D  L  S  F  K  I  L  L  I  G  D  S  G  V  G  K  S  S  L  L  V  S  F  I  S  N  A  V  D  D  L  A  P  T  I   : G  V  D  F  K  I  K  T  L  T  V  S  G  K  K  L  K  L  T  I  W  D  T   : A  G  Q  E  R  F  R  T  L  T  S  S  Y  Y  R  G  A  Q  G  I  I  L   : V  Y  D  V  T  R  R  E  T  F  T  N  L  S  D  V  W  A  K  E  V  E  L  Y  S  N  N  Q  D  C  V  K  M  L  V  G  N  K  V  D  R  :  E  S  E  R  A  V  T  R  E  E  G  I  A  L  A  K  E  L  G  G  L  F  L  E  C  S  A  K  T  R  E  N  V  Q  N  C  F  E  E  L  A  L  K  :  I  M  E  V  P  S  L  L  E  E  G  S  T  V  G  K  R  N  I  L  K  Q  K  Q  E  Q  Q  T  Q  Q  G  G  G  G  C  C  S  *  *  K  K  L  C  T  R  W  C  T  Y  Q  I  C  I  C  C  F  L  F  F  F  T  V  F  I  L  L  L  L  *  K  W  L  V  V  S  C  K  V  I  D  R  C  W  S  L  T  N  V  L  V  N  I  C  Q  I  A  V  K  L  G  G  I  S  *  F  *  C  A  F  H  Q   </second_frame>
            <third_frame>   E  S  S  E  S  C  Q  K  L  S  E  Y  F  Y  L  A  L  C  I  S  L  C  R  H  C  V  T  V  A  *  F  L  E  R  E  S  A  E  F  L  C  *  I  G  R  R  E  R  E  S  *  V  E  E  G  G  V  R  R  W  V  H  R  R  R  R  R  G  R  A  T  A  V  T  I  C  H  L  R  S  C  *  S  E  I  L  E  L  E  R  V  A  C  L  L  A  S  F  L  M  P  L  T  I  W  P  L  P  L  :  A  L  I  L  R  S  R  H  S  L  L  V  G  K  N  *  S  L  P  F  G  T  Q  :  L  G  R  R  G  S  G  H  *  Q  A  P  T  T  E  V  L  K  G  S  F  L  :  S  M  M  *  Q  E  E  R  P  S  Q  T  C  L  M  C  G  Q  K  R  W  S  C  I  V  I  I  R  I  V  *  R  C  W  L  E  I  K  L  T  E :   N  P  R  E  L  *  P  G  K  K  A  L  P  *  R  R  N  L  E  V  Y  F  L  N  V  V  L  K  L  E  K  M  C  K  T  A  L  K  S  L  P  *  R :   *  W  R  C  L  V  S  L  K  K  D  P  L  *  G  R  E  I  S  *  N  R  N  K  N  S  K  H  N  R  A  V  V  V  A  A  H  D  K  K  N  C  A  L  D  G  A  H  I  K  Y  V  Y  A  V  F  F  S  S  L  L  F  L  S  C  C  C  F  E  S  G  *  *  S  H  V  K  *  L  I  D  V  G  H  *  P  M  F  L  L  I  F  A  R  L  L  S  N  W  V  V  F  H  N  F  N  V  H  F  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99330" stop="99498"/>
                    <exon start="100824" stop="100892"/>
                    <exon start="101816" stop="101881"/>
                    <exon start="102948" stop="103069"/>
                    <exon start="103688" stop="103816"/>
                    <exon start="104225" stop="104338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRSSPMGPSTATTGQSNSSYDLSFKILLIGDSGVGKSSLLVSFISNAVDDLAPTIGVDFKIKTLTVSGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSNNQDCVKMLVGNKVDRESERAVTREEGIALAKELGGLFLECSAKTRENVQNCFEELALKIMEVPSLLEEGSTVGKRNILKQKQEQQTQQGGGGCCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="106033" PGL_stop="104782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106033" e_stop="105947"/>
            <exon e_start="105817" e_stop="105739"/>
            <exon e_start="105494" e_stop="105400"/>
            <exon e_start="105280" e_stop="105185"/>
            <exon e_start="105090" e_stop="104782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106033" e_stop="105947" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105946" i_stop="105818" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105817" e_stop="105739" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.986">
            <gDNA_intron_boundary i_start="105738" i_stop="105495" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105494" e_stop="105400" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="105399" i_stop="105281" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105280" e_stop="105185" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105184" i_stop="105091" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105090" e_stop="104782" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106033" stop="105947"/>
              <exon start="105817" stop="105739"/>
              <exon start="105494" stop="105400"/>
              <exon start="105280" stop="105185"/>
              <exon start="105090" stop="104782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG : CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG : GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG : CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG : ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</gDNA_template>
            <first_frame> F  N  G  N  I  D  E  P  L  E  D  G  D  T  A  L  H  I  T  C  L  Y  G  H  L  A  C  V  E  :  L  L  L  E  R  G  A  S  V  E  A  K  D  E  D  G  A  I  P  L  H  D  A  C  A  G   : G  Y  T  E  I  A  R  L  L  I  N  N  A  P  D  P  E  C  V  K  R  M  L  D  T  F  D  E  E  G  D  A  :  P  L  H  H  A  A  R  G  E  H  L  D  V  I  R  L  L  I  A  S  G  A  S  A  C  R  N  N  L  L  G  R  :  T  P  S  E  L  V  E  P  E  S  E  A  C  I  I  L  D  E  A  I  S  A  E  I  G  R  P  Y  R  S  T  *  R  K  F  G  R  S  A  I  V  D  M  F  P  L  V  L  *  V  L  V  L  Y  *  K  L  G  Y  Y  A  *  M  L  K  Y  S  L  Y  S  E  I  A  H  C  S  M  R  N  T  H  L  F  *  S  D  C  *  M  I  H  Q  L  E  L  *  N  M  E  T  L  F  V </first_frame>
            <second_frame>  L  M  E  T  L  M  N  L  *  K  M  G  T  L  L  F  I  L  L  V  C  M  A  I  W  H  V  W  S :   Y  C  *  R  E  E  L  L  W  R  L  R  M  K  M  E  Q  F  H  C  M  M  L  V  L  E  :  D  T  Q  K  *  P  V  C  *  S  T  M  H  L  T  L  N  A  *  K  G  C  W  T  P  L  M  K  K  V  M  R :   L  S  I  M  P  P  E  V  N  I  *  M  *  S  D  Y  *  *  L  Q  G  L  L  L  V  G  T  I  Y  *  E  G :   P  H  L  S  L  L  S  L  K  V  K  L  A  *  S  *  T  K  L  *  V  L  K  S  A  V  P  I  G  L  R  K  E  N  L  D  A  R  L  L  S  I  C  F  P  L  F  C  R  Y  *  C  Y  I  R  N  S  D  I  M  L  E  C  *  N  T  L  Y  I  V  R  L  H  I  A  V  *  E  I  L  I  F  F  E  A  T  V  K  *  F  I  N  *  N  Y  R  I  W  K  L  Y  L   </second_frame>
            <third_frame>   *  W  K  H  *  *  T  S  R  R  W  G  H  C  S  S  Y  Y  L  S  V  W  P  S  G  M  C  G   : A  T  V  R  E  R  S  F  C  G  G  *  G  *  R  W  S  N  S  I  A  *  C  L  C  W  R :   I  H  R  N  S  P  S  A  N  Q  Q  C  T  *  P  *  M  R  E  K  D  A  G  H  L  *  *  R  R  *  C   : A  S  P  S  C  R  Q  R  *  T  F  R  C  D  Q  I  I  D  S  F  R  G  F  C  L  *  E  Q  F  I  R  K   : D  P  I  *  A  C  *  A  *  K  *  S  L  H  N  L  R  R  S  Y  K  C  *  N  R  P  S  L  *  V  Y  V  K  K  I  W  T  L  G  Y  C  R  Y  V  S  P  C  S  V  G  T  S  V  I  L  E  T  R  I  L  C  L  N  V  K  I  L  F  I  *  *  D  C  T  L  Q  Y  E  K  Y  S  S  F  L  K  R  L  L  N  D  S  S  T  R  I  I  E  Y  G  N  F  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106033" stop="105947"/>
                    <exon start="105817" stop="105739"/>
                    <exon start="105494" stop="105400"/>
                    <exon start="105280" stop="105185"/>
                    <exon start="105090" stop="104995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGNIDEPLEDGDTALHITCLYGHLACVELLLERGASVEAKDEDGAIPLHDACAGGYTEIARLLINNAPDPECVKRMLDTFDEEGDAPLHHAARGEHLDVIRLLIASGASACRNNLLGRTPSELVEPESEACIILDEAISAEIGRPYRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 283600 bytes spliced alignments in total
$ 72 spliced alignments have been stored
$ 3938 bytes was the average size of a spliced alignment
$ 18808 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1880 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 128 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:35:51
-->
