<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:47:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0142I14-EIGRF/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0142I14-EIGRF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0142I14-EIGRF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8550-2" ref_strand="-" ref_description="SGN-M8550-2 C2_At5g02230-2 [cosii_markers]">
      <seq>cccccgggctgcagaatcggcacgaggtagtgctggtctcgcgactagtgttcgccagaatattgaagattatatggttgaaaagcttggcatagaacaaagcaaaattgaggagttgggtaatttactgtacaagaattatggaaccacaatggcaggcctcagggcaattggctacgatttcgactatgatgagtaccatagttttatccatggtagattaccttatgaaaatttgagacccgaccctgttctgagaaatcttttgctaagcattcccattcgcaaagttatcttcactaatgctgataaggtccatgctctgaaagctctgagtaaacttggattggaagattgtttcgaagggatattatgctttgagacactgaatccagttcacaagagcactctatcagatgacgaagacgacattgagtttgttggatcagccacatcctccaacgccactgctactaacggctctgagatttttgacattattggacacttttctcaacctaaggttggatcagtgttgccaaagacaccaattgtctgcaaaccttcagaagttgccattgaacgggctttaaagattgccaacattaacccacacagaacacttttctttgaagatagtgtccgtaacattctagctggcaaatgtgtaggtcttgatacagtattggttggaaattcccaaagagttgcaggtgcagactatgcattagaaagcatccacaacataagggaagcaataccacaactttgggaagttgacaggctggctgaagttaactactctggtgtagctgttgagacatctgtcacagcttagaatcagtagtagtactatatcatcatcatgctgttggcagaagaaaaaaaataaatcaagaatgattgtgggaagatccaaatgtcctgtcaaatttgatttaaatgatgttgatgttttgttgtcattattatcaattaataactagttatagtatttcctttccattcacaaatcttgtaaataaattctatatttatcagtctacctttctatgattatataataaagttcaattattaattattccaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0142I14-EIGRF/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0142I14.1" temp_strand="+" temp_description="C09HBa0142I14.1  EU180573.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0142I14 upload_account_name:spain">
        <position start="1" stop="2213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="77" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="166" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78" i_stop="196" i_length="119">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="197" g_stop="234" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="204" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="235" i_stop="323" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="324" g_stop="411" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="292" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="412" i_stop="516" i_length="105">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="517" g_stop="846" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="622" r_length="330" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="847" i_stop="940" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="941" g_stop="1006" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="688" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1007" i_stop="1502" i_length="496">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1503" g_stop="1913" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="1098" r_length="410" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1099" polyA_stop="1114"/>
      <MATCH_line gen_id="C09HBa0142I14.1" gen_strand="+" ref_id="SGN-M8550-2" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>1010</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0142I14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8550-2" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="77"/>
          <exon e_start="197" e_stop="234"/>
          <exon e_start="324" e_stop="411"/>
          <exon e_start="517" e_stop="846"/>
          <exon e_start="941" e_stop="1006"/>
          <exon e_start="1503" e_stop="1913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAGAACAAAGCAAAATTGAGAAGTTGGGTAATTTACTGTATAAGAATTATGGAACCACAATGGCAGGCCTCAGGGTAAAGTTCTTTCTGATTTTTTTTCTTTCAAATTATACCCTTATCAAATTTTGGTCATCCAAACGAAGTTCTATTATGACGAGTTTAACTTAATAAGACAATTCGTTTATTTTGGGCAGGCAATTGGCTACGATTTTGACTATGATGAGTACCATAGGTGAGTATTTGTAGCACTCAATTGTTTTTATACTCTCATTGTATTGTATTTGGTTATTGAACTTAAATTGAAAAATTTGTTTTCTGCAGTTTTATCCATGGTAGATTACCTTATGAAAATTTGAGGCCTGATCCTGTTCTGAGAAATCTTTTGCTAAGCATTCCCATTCGCAAAGTTGTAAGTCCATAATCACAATTCATATGCATTTATATAGCCATCGAAAATGGCTAATTGTGTAGCATTTTCTAAATGTTTCCCTTTTTTTTTTTTCCGGTGTAACAGATCTTCACTAATGCTGATAAGGTCCATGCTCTGAAAGCTCTGAGTAAACTTGGATTGGAAGATTGTTTCGAAGGGATATTATGCTTTGAGACACTGAATCCAGTCCACAAGAGCACTCCATCAGATGACGAAGATGACATTGAGTTTGTTGGATCAGCCACATCCTCCAACGCCACCGCCACTAATGGCTCTGGGATCTTTGACATTATTGGACACTTCTCTCAACCTAAGGCTGGAGCAGAGTTGCCAAAGACACCAATTGTCTGCAAACCTTCAGAAGTTGCCATTGAACGGGCTTTAAAGATTGCCAACATTAACCCACACAGAACAGTAAGAAATTCAACTATTTCATTCTTGAATACTACTACTACTTCATGAATCCACTATCTTAAAGTACTCATTTGGAAAAATTTCGATGTCACAGCTTTTCTTTGAAGATAGTGTCCGTAACATTCAAGCTGGCAAGCGTGTAGGTCTTGATACAGTATTGGTGAGTAGTTGTACTCCCTTCATTTCATTTTATATGACACTCTTTCCTCCACTCCACAAATAATGATTCACTTCTATAAATATTTTGAGAAATTCATAACATCAAACTTCGTATTTTACCATTAATGTGACACCATTTAACCCCAAGAGCATGTTCAAGACAGCAAGTTCTAAGGTGCAGTTATGGTAAATGTGCAGAAGTCTTATCTTTCTTAAATTACGTCCAGTCCTACACTGGAGAAACAAAGGGAACAGTCTTGTTAGAGTAAACTCACCCCCCTAGAGGGATTGTTCCTTATAGACCCTTCGCTACTGTATCAAGGAAACAGTCAACTCTACTACCAACTAACCGTACAATAGCAAAGAGGGTAACCCCACCTCTCTCCCCTACAAACAGTGCGGCATCACTCTACTACCAACTAACCATACTTTTCTATCTAGGGTCATGTAGCGATGTCCTGTCCAATGCTCAATGTGTTGTTGCTGTTACATTTCAGGTTGGAAATTCCCAAAGAGTTGCAGGTGCAGATTATGCATTAGAAAGTATCCACAACATCAGGGAAGCAATACCACAACTTTGGGAAGTAGACAGGCTGGCTGAAGTTAACTACTCTGGTGTAGCTGTTGAGACATCTGTCACAGCTTAGAATCAGTAGTACTACTATATCTCATCATCATGCTGATGGCAGAAGGAAAAAAAAATTAATCAAGAATCA---TGAGAAGATCCAAAATTTTCTGTCAAATTTGATTTTAAATGATGTTGATGTTTTGTTGTC------ATCAATTAATAACTAGCTTTTAGTATTTCCTTTCCATCCACAAATCTTGTAAATAAATTCTATATTTATCAGTCTACCTTTCTATGATTATATAATAATGAAGTTCAATTATTAATTATTCCAAAGGATAAA</genome_strand>
        <mrna_strand>GCATAGAACAAAGCAAAATTGAGGAGTTGGGTAATTTACTGTACAAGAATTATGGAACCACAATGGCAGGCCTCAGG.......................................................................................................................GCAATTGGCTACGATTTCGACTATGATGAGTACCATAG.........................................................................................TTTTATCCATGGTAGATTACCTTATGAAAATTTGAGACCCGACCCTGTTCTGAGAAATCTTTTGCTAAGCATTCCCATTCGCAAAGTT.........................................................................................................ATCTTCACTAATGCTGATAAGGTCCATGCTCTGAAAGCTCTGAGTAAACTTGGATTGGAAGATTGTTTCGAAGGGATATTATGCTTTGAGACACTGAATCCAGTTCACAAGAGCACTCTATCAGATGACGAAGACGACATTGAGTTTGTTGGATCAGCCACATCCTCCAACGCCACTGCTACTAACGGCTCTGAGATTTTTGACATTATTGGACACTTTTCTCAACCTAAGGTTGGATCAGTGTTGCCAAAGACACCAATTGTCTGCAAACCTTCAGAAGTTGCCATTGAACGGGCTTTAAAGATTGCCAACATTAACCCACACAGAACA..............................................................................................CTTTTCTTTGAAGATAGTGTCCGTAACATTCTAGCTGGCAAATGTGTAGGTCTTGATACAGTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAATTCCCAAAGAGTTGCAGGTGCAGACTATGCATTAGAAAGCATCCACAACATAAGGGAAGCAATACCACAACTTTGGGAAGTTGACAGGCTGGCTGAAGTTAACTACTCTGGTGTAGCTGTTGAGACATCTGTCACAGCTTAGAATCAGTAGTAGTACTATA--TCATCATCATGCTGTTGGCAGAA-G-AAAAAAAATAAATCAAGAATGATTGTGGGAAGATCC-AAATGTCCTGTCAAATTTGA-TTTAAATGATGTTGATGTTTTGTTGTCATTATTATCAATTAATAACTAG-TTATAGTATTTCCTTTCCATTCACAAATCTTGTAAATAAATTCTATATTTATCAGTCTACCTTTCTATGATTATATAAT-A--AAGTTCAATTATTAATTATTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="77"/>
            <exon e_start="197" e_stop="234"/>
            <exon e_start="324" e_stop="411"/>
            <exon e_start="517" e_stop="846"/>
            <exon e_start="941" e_stop="1006"/>
            <exon e_start="1503" e_stop="1913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="0.961"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.974"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.998" acc_prob="0.803" e_score="0.964"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.955"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="1" e_stop="77" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="78" i_stop="196" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="197" e_stop="234" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="235" i_stop="323" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="324" e_stop="411" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="412" i_stop="516" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="517" e_stop="846" e_length="330"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.803">
            <gDNA_intron_boundary i_start="847" i_stop="940" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="941" e_stop="1006" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="1007" i_stop="1502" i_length="496"/>
          </intron>
          <exon e_serial="6" e_score="0.893">
            <gDNA_exon_boundary e_start="1503" e_stop="1913" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="77"/>
              <exon start="197" stop="234"/>
              <exon start="324" stop="411"/>
              <exon start="517" stop="846"/>
              <exon start="941" stop="1006"/>
              <exon start="1503" stop="1913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8550-2" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAGAACAAAGCAAAATTGAGAAGTTGGGTAATTTACTGTATAAGAATTATGGAACCACAATGGCAGGCCTCAGG : GCAATTGGCTACGATTTTGACTATGATGAGTACCATAG : TTTTATCCATGGTAGATTACCTTATGAAAATTTGAGGCCTGATCCTGTTCTGAGAAATCTTTTGCTAAGCATTCCCATTCGCAAAGTT : ATCTTCACTAATGCTGATAAGGTCCATGCTCTGAAAGCTCTGAGTAAACTTGGATTGGAAGATTGTTTCGAAGGGATATTATGCTTTGAGACACTGAATCCAGTCCACAAGAGCACTCCATCAGATGACGAAGATGACATTGAGTTTGTTGGATCAGCCACATCCTCCAACGCCACCGCCACTAATGGCTCTGGGATCTTTGACATTATTGGACACTTCTCTCAACCTAAGGCTGGAGCAGAGTTGCCAAAGACACCAATTGTCTGCAAACCTTCAGAAGTTGCCATTGAACGGGCTTTAAAGATTGCCAACATTAACCCACACAGAACA : CTTTTCTTTGAAGATAGTGTCCGTAACATTCAAGCTGGCAAGCGTGTAGGTCTTGATACAGTATTG : GTTGGAAATTCCCAAAGAGTTGCAGGTGCAGATTATGCATTAGAAAGTATCCACAACATCAGGGAAGCAATACCACAACTTTGGGAAGTAGACAGGCTGGCTGAAGTTAACTACTCTGGTGTAGCTGTTGAGACATCTGTCACAGCTTAGAATCAGTAGTACTACTATATCTCATCATCATGCTGATGGCAGAAGGAAAAAAAAATTAATCAAGAATCATGAGAAGATCCAAAATTTTCTGTCAAATTTGATTTTAAATGATGTTGATGTTTTGTTGTCATCAATTAATAACTAGCTTTTAGTATTTCCTTTCCATCCACAAATCTTGTAAATAAATTCTATATTTATCAGTCTACCTTTCTATGATTATATAATAATGAAGTTCAATTATTAATTATTCCAAAGGATAAA</gDNA_template>
            <first_frame> G  *  N  K  A  K  L  R  S  W  V  I  Y  C  I  R  I  M  E  P  Q  W  Q  A  S  G :   Q  L  A  T  I  L  T  M  M  S  T  I   : V  L  S  M  V  D  Y  L  M  K  I  *  G  L  I  L  F  *  E  I  F  C  *  A  F  P  F  A  K  L :   S  S  L  M  L  I  R  S  M  L  *  K  L  *  V  N  L  D  W  K  I  V  S  K  G  Y  Y  A  L  R  H  *  I  Q  S  T  R  A  L  H  Q  M  T  K  M  T  L  S  L  L  D  Q  P  H  P  P  T  P  P  P  L  M  A  L  G  S  L  T  L  L  D  T  S  L  N  L  R  L  E  Q  S  C  Q  R  H  Q  L  S  A  N  L  Q  K  L  P  L  N  G  L  *  R  L  P  T  L  T  H  T  E  H :   F  S  L  K  I  V  S  V  T  F  K  L  A  S  V  *  V  L  I  Q  Y  W :   L  E  I  P  K  E  L  Q  V  Q  I  M  H  *  K  V  S  T  T  S  G  K  Q  Y  H  N  F  G  K  *  T  G  W  L  K  L  T  T  L  V  *  L  L  R  H  L  S  Q  L  R  I  S  S  T  T  I  S  H  H  H  A  D  G  R  R  K  K  K  L  I  K  N  H  E  K  I  Q  N  F  L  S  N  L  I  L  N  D  V  D  V  L  L  S  S  I  N  N  *  L  L  V  F  P  F  H  P  Q  I  L  *  I  N  S  I  F  I  S  L  P  F  Y  D  Y  I  I  M  K  F  N  Y  *  L  F  Q  R  I   </first_frame>
            <second_frame>  D  R  T  K  Q  N  *  E  V  G  *  F  T  V  *  E  L  W  N  H  N  G  R  P  Q   : G  N  W  L  R  F  *  L  *  *  V  P  *  :  F  Y  P  W  *  I  T  L  *  K  F  E  A  *  S  C  S  E  K  S  F  A  K  H  S  H  S  Q  S   : Y  L  H  *  C  *  *  G  P  C  S  E  S  S  E  *  T  W  I  G  R  L  F  R  R  D  I  M  L  *  D  T  E  S  S  P  Q  E  H  S  I  R  *  R  R  *  H  *  V  C  W  I  S  H  I  L  Q  R  H  R  H  *  W  L  W  D  L  *  H  Y  W  T  L  L  S  T  *  G  W  S  R  V  A  K  D  T  N  C  L  Q  T  F  R  S  C  H  *  T  G  F  K  D  C  Q  H  *  P  T  Q  N   : T  F  L  *  R  *  C  P  *  H  S  S  W  Q  A  C  R  S  *  Y  S  I   : G  W  K  F  P  K  S  C  R  C  R  L  C  I  R  K  Y  P  Q  H  Q  G  S  N  T  T  T  L  G  S  R  Q  A  G  *  S  *  L  L  W  C  S  C  *  D  I  C  H  S  L  E  S  V  V  L  L  Y  L  I  I  M  L  M  A  E  G  K  K  N  *  S  R  I  M  R  R  S  K  I  F  C  Q  I  *  F  *  M  M  L  M  F  C  C  H  Q  L  I  T  S  F  *  Y  F  L  S  I  H  K  S  C  K  *  I  L  Y  L  S  V  Y  L  S  M  I  I  *  *  *  S  S  I  I  N  Y  S  K  G  *  </second_frame>
            <third_frame>   I  E  Q  S  K  I  E  K  L  G  N  L  L  Y  K  N  Y  G  T  T  M  A  G  L  R  :  A  I  G  Y  D  F  D  Y  D  E  Y  H  S :   F  I  H  G  R  L  P  Y  E  N  L  R  P  D  P  V  L  R  N  L  L  L  S  I  P  I  R  K  V  :  I  F  T  N  A  D  K  V  H  A  L  K  A  L  S  K  L  G  L  E  D  C  F  E  G  I  L  C  F  E  T  L  N  P  V  H  K  S  T  P  S  D  D  E  D  D  I  E  F  V  G  S  A  T  S  S  N  A  T  A  T  N  G  S  G  I  F  D  I  I  G  H  F  S  Q  P  K  A  G  A  E  L  P  K  T  P  I  V  C  K  P  S  E  V  A  I  E  R  A  L  K  I  A  N  I  N  P  H  R  T  :  L  F  F  E  D  S  V  R  N  I  Q  A  G  K  R  V  G  L  D  T  V  L  :  V  G  N  S  Q  R  V  A  G  A  D  Y  A  L  E  S  I  H  N  I  R  E  A  I  P  Q  L  W  E  V  D  R  L  A  E  V  N  Y  S  G  V  A  V  E  T  S  V  T  A  *  N  Q  *  Y  Y  Y  I  S  S  S  C  *  W  Q  K  E  K  K  I  N  Q  E  S  *  E  D  P  K  F  S  V  K  F  D  F  K  *  C  *  C  F  V  V  I  N  *  *  L  A  F  S  I  S  F  P  S  T  N  L  V  N  K  F  Y  I  Y  Q  S  T  F  L  *  L  Y  N  N  E  V  Q  L  L  I  I  P  K  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0142I14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3" stop="77"/>
                    <exon start="197" stop="234"/>
                    <exon start="324" stop="411"/>
                    <exon start="517" stop="846"/>
                    <exon start="941" stop="1006"/>
                    <exon start="1503" stop="1652"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEQSKIEKLGNLLYKNYGTTMAGLRAIGYDFDYDEYHSFIHGRLPYENLRPDPVLRNLLLSIPIRKVIFTNADKVHALKALSKLGLEDCFEGILCFETLNPVHKSTPSDDEDDIEFVGSATSSNATATNGSGIFDIIGHFSQPKAGAELPKTPIVCKPSEVAIERALKIANINPHRTLFFEDSVRNIQAGKRVGLDTVLVGNSQRVAGADYALESIHNIREAIPQLWEVDRLAEVNYSGVAVETSVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 2 chains have been computed
$ 
$ memory statistics:
$ 1512 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 1512 bytes was the average size of a spliced alignment
$ 5688 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5688 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 3 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:47:05
-->
