<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:51:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367479" ref_strand="+" ref_description="SGN-E367479 [cLPT-7-I7]">
      <seq>gagtatctactgtaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggtatgtttttctccttctgggccctgaactgacaattggtgcagaggatctttaacttcaacttcttggccagacaagtaaggcacgaacttttaatgtattgcaggcactggtggagagagtatatatggagggaaatttccagatgagaacttcaaagttgcccacacggaggctggtcttctctcaatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttgtttttggaaaagttgtaaagggaatggatttagtgaagaaaattgaacagctgggaacagacagtgggaagccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="2672" stop="4546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2972" g_stop="3045" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3046" i_stop="3611" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3612" g_stop="3781" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="244" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3782" i_stop="3861" i_length="80">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3862" g_stop="3979" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="362" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3980" i_stop="4159" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4160" g_stop="4246" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="449" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E367479" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2972" e_stop="3045"/>
          <exon e_start="3612" e_stop="3781"/>
          <exon e_start="3862" e_stop="3979"/>
          <exon e_start="4160" e_stop="4246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATC</genome_strand>
        <mrna_strand>GAGTATCTACTGTAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAGGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAGAACTTCAAAGTTGCCCACACGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395700" ref_strand="-" ref_description="SGN-E395700 [TUS-17-K24](-)">
      <seq>gctggtcttctctcaatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttgtttttggaaaagttgtaaagggaatggatttagtgaagaaaattgaacagctgggaacagacagtgggaagccatctgggcttgtgaaaattgtggattgtggcgaactgtctgagaagaaaagtaatgatacacccaaagcagagaaagggaaaaataagaagtccgcgagagctctttcctctgatgatgattcagacagtcaagaaaaggggaaaagcaaatcatccaccaatagaaggaaaaagaaaaagaggagatactcttcatctgattcttacagttctgagacagatactgattcctcttcagactctgattcagattctaagctggactcctattcttctagttcttcaggtgatgaaaggcgtaagaagaggaagaggtcaactaagaaagaaaggagtcgacatgggaagaaaaaaggtagaaaaagcacgagcagaagagttgatccaaataaaagatcgagacgcaagtggagctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="3591" stop="5079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3891" g_stop="3979" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3980" i_stop="4159" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4160" g_stop="4320" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="250" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4321" i_stop="4436" i_length="116">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4437" g_stop="4770" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="584" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4771" i_stop="4857" i_length="87">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4858" g_stop="4865" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="592" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E395700" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395700" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3891" e_stop="3979"/>
          <exon e_start="4160" e_stop="4320"/>
          <exon e_start="4437" e_stop="4770"/>
          <exon e_start="4858" e_stop="4865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAGGTGATTTTCTCTAAGACTAAGACTACTCTGCTGCAGTGTTACTACCTTATGTATAAGAGATTGTTGTGTGGTCTTGTTTCTGTTGTTCATTCATATATTTTTTGCCTCACCTCTAGGGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTG</genome_strand>
        <mrna_strand>GCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG....................................................................................................................GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCCAAATAAAAGATCGAGACGCAAGTG.......................................................................................GAGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329504" ref_strand="+" ref_description="SGN-E329504 [cTOD-11-A23]">
      <seq>gaaataaaagatcgagacgcaagtggagctctgagagttctagggacacagacagtcagagcatgagcagcagcagcagcggtgatagctctgatgatgaaaatgacaggccaaataattctgcacgaaaaggtttggtgaagaaagggtnaaaccctgtcaaaggacaagctgtttttgaagcagcaacagaatcttgaagagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="4446" stop="5424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4746" g_stop="4770" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4771" i_stop="4857" i_length="87">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4858" g_stop="4964" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="132" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4965" i_stop="5050" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5051" g_stop="5124" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E329504" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4746" e_stop="4770"/>
          <exon e_start="4858" e_stop="4964"/>
          <exon e_start="5051" e_stop="5124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTG-TTTTGAAGCAGCAACAGAATCTTGAAGAGGGT</genome_strand>
        <mrna_strand>GAAATAAAAGATCGAGACGCAAGTG.......................................................................................GAGCTCTGAGAGTTCTAGGGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAG......................................................................................GTTTGGTGAAGAAAGGGTNAAACCCTGTCAAAGGACAAGCTGTTTTTGAAGCAGCAACAGAATCTTGAAGAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212780" ref_strand="+" ref_description="SGN-E212780 [cLEC-73-P2]">
      <seq>tacaggtttggtgaagaaattgtcaaaccctgtcaaaggacaagctgttttgaagcagcaacagaatcttgaagagggtgaagtgtctaagaacgctaagcttccaaataatggtcatggtggagatgtacaaaacgacaggactctctccacaaatcatcaatctgataattcgagcagatccaggagcacaacaccaagtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="4746" stop="5955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5046" g_stop="5231" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5232" i_stop="5344" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5345" g_stop="5655" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="497" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E212780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5046" e_stop="5231"/>
          <exon e_start="5345" e_stop="5655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTT</genome_strand>
        <mrna_strand>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731214" ref_strand="+" ref_description="SGN-E731214 [LA26BH09]">
      <seq>ccatgtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatataagtgactaaatttgcagaagacttttggccctaggttaaaaccttgttccatcaaaatgtcgccttagctggggatttccaactcaaattttatcattttgggtttcagaaaacttagcagttccaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="5055" stop="6867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5355" g_stop="5704" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5705" i_stop="5786" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5867" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="431" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5868" i_stop="6062" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6063" g_stop="6556" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="929" r_length="498" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="939" polyA_stop="951"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E731214" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5355" e_stop="5704"/>
          <exon e_start="5787" e_stop="5867"/>
          <exon e_start="6063" e_stop="6556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGG-CCTAGGTTTAAACCTTGTTCCATC-AGATGTTCGCTTAGCT-GGGATTTCCAACTC-AATTTTATCATTTTGTGTTTCAGTAAACTA</genome_strand>
        <mrna_strand>CCATGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATAAGTGACTAAATTTGCAGAAGACTTTTGGCCCTAGGTTAAAACCTTGTTCCATCAAAATGTCGCCTTAGCTGGGGATTTCCAACTCAAATTTTATCATTTTGGGTTTCAGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731891" ref_strand="+" ref_description="SGN-E731891 [LA28BH09]">
      <seq>ccaagtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagagccaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="5055" stop="6138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5355" g_stop="5704" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5705" i_stop="5786" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5850" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="412" r_length="62" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E731891" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5355" e_stop="5704"/>
          <exon e_start="5787" e_stop="5850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGA</genome_strand>
        <mrna_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGA--GCCAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553551" ref_strand="-" ref_description="SGN-E553551 [cTSC-1-H21]">
      <seq>ggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatatgagtgactaaatttgcagagaacttttggcctaggtttaaaccttgttccatcagatgttcgcttagctgggatttccaactcaattttatcattttgtgtttcagtaaactagcagttcgacattgaatgttttacttatggaaaaagggtctcatttagcctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="5292" stop="6911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5592" g_stop="5704" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5705" i_stop="5786" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5867" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5868" i_stop="6062" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6063" g_stop="6611" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="743" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E553551" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5592" e_stop="5704"/>
          <exon e_start="5787" e_stop="5867"/>
          <exon e_start="6063" e_stop="6611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTA</genome_strand>
        <mrna_strand>GGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379253" ref_strand="-" ref_description="SGN-E379253 [TUS-3-G10]">
      <seq>tattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatatgagtgactaaatttgcagagaacttttggcctaggtttaaaccttgttccatcagatgttcgcttagctgggatttccaactcaattttatcattttgtgtttcagtaaactagcagttcgacattgaatgttttacttatggaaaaagggtctcatttagcctcgtactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="5364" stop="6922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5664" g_stop="5704" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5705" i_stop="5786" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5867" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="122" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5868" i_stop="6062" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6063" g_stop="6621" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="681" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E379253" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5664" e_stop="5704"/>
          <exon e_start="5787" e_stop="5867"/>
          <exon e_start="6063" e_stop="6621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</genome_strand>
        <mrna_strand>TATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210363" ref_strand="+" ref_description="SGN-E210363 [cLEC-35-P13]">
      <seq>acgaggctaaatgagaccctttttccataagtaaaacattcaatgtcgaactgcgagcttactgatttactatttttatttaattgaggtggaaatcccagctaagcgaacatctgatggaacaaggtttaaacctaggccaaaagttctctgcaaatctagtcactcatatatgagcatggagggtacagagattagtttgtcccacagggactgatatcctcatatgagactagacccctcggtcgaggaggggaggttgatctcgaactatcaggcgatgcggatcctactttcctactgtgcttccttggagcaacagaaggggatcgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="6910" stop="5976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6610" g_stop="6276" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E210363" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6610" e_stop="6276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCTAGTTTACTGAAACAC-AAAATGATAAAATTGAGTTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATTTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGTGGGGAGGTTGATCTCGAACTATTAGGTGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAGCAGAAGGGGATCGAGGA</genome_strand>
        <mrna_strand>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCGAGCTTACTGATTTACTATTTTTATTTAATTGAGGTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATCTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGAGGGGAGGTTGATCTCGAACTATCAGGCGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAACAGAAGGGGATCGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746371" ref_strand="+" ref_description="SGN-E746371 [GI|47104273]">
      <seq>attaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttattatctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10098" stop="6822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9798" g_stop="9190" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8179" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="916" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7470" g_stop="7122" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1265" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1266" polyA_stop="1278"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E746371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1265</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9798" e_stop="9190"/>
          <exon e_start="8485" e_stop="8179"/>
          <exon e_start="7470" e_stop="7122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</genome_strand>
        <mrna_strand>ATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238725" ref_strand="+" ref_description="SGN-E238725 [cLEL-9-A15](-)">
      <seq>aagaatacatagagtggtttgagaaggcaggattcacgaacgtccaactaaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8633" stop="6828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8333" g_stop="8179" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7129" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="497" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="516"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E238725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8333" e_stop="8179"/>
          <exon e_start="7470" e_stop="7129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATT</genome_strand>
        <mrna_strand>AAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGAACGTCCAACTAAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216228" ref_strand="+" ref_description="SGN-E216228 [cLEL-13-H4](-)">
      <seq>aggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccgaatgtagactctactcctttactatagctcttttcggatgacttcnaccttttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8547" stop="6828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8247" g_stop="8179" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7132" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="408" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="426"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E216228" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8247" e_stop="8179"/>
          <exon e_start="7470" e_stop="7132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</genome_strand>
        <mrna_strand>AGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCGAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCNACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238919" ref_strand="+" ref_description="SGN-E238919 [cLEL-9-A15](-)">
      <seq>taaatccatttgtctttatgctgcggtttcttttgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="7736" stop="6828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7436" g_stop="7132" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="327"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E238919" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7436" e_stop="7132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</genome_strand>
        <mrna_strand>TAAATCCATTTGTCTTTATGCTGCGGTTTCTTTTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282334" ref_strand="-" ref_description="SGN-E282334 [cLER-18-K7]">
      <seq>catgggatgttctgtaactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactccactcctttactatagctcttttcggatgacttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8533" stop="6837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8233" g_stop="8179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7137" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="389" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="403"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E282334" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8233" e_stop="8179"/>
          <exon e_start="7470" e_stop="7137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAA</genome_strand>
        <mrna_strand>CATGGGATGTTCTGTAACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCCACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689876" ref_strand="+" ref_description="SGN-E689876 [LH_Ea02A18]">
      <seq>cgatcgtggaatccgagaggcatacagagttctgaaacctgcaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatatagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggaatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcgactaaagttgatataattttccaaatgtagactctactcctttactatagctctttatatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8762" stop="6852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8464" g_stop="8179" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7152" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="623" r_length="337" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="643"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E689876" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8464" e_stop="8179"/>
          <exon e_start="7470" e_stop="7152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTT</genome_strand>
        <mrna_strand>CGATCGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGCAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATATAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGAATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693716" ref_strand="+" ref_description="SGN-E693716 [LH_Ea02A18](-)">
      <seq>aacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggaatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagattggtctcgactaaagttgatataattttccaaatgtagaaacggctcctttactatagctctttatattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8762" stop="6852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8462" g_stop="8179" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7152" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="621" r_length="337" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E693716" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8462" e_stop="8179"/>
          <exon e_start="7470" e_stop="7152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTT</genome_strand>
        <mrna_strand>AACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGAATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGATTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGAAACGGCTCCTTTACTATAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690516" ref_strand="+" ref_description="SGN-E690516 [LH_Ea03L10]">
      <seq>cgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcgactaaagttgatataattttccaaatgtagactctactcctttactataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="8550" stop="6859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8250" g_stop="8179" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7470" g_stop="7159" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="402" r_length="330" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="416"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E690516" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8250" e_stop="8179"/>
          <exon e_start="7470" e_stop="7159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATA</genome_strand>
        <mrna_strand>CGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206939" ref_strand="+" ref_description="SGN-E206939 [cLEC-33-K15]">
      <seq>gagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccacaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="9653" stop="7050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9353" g_stop="9190" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8179" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="471" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7470" g_stop="7350" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="592" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E206939" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9353" e_stop="9190"/>
          <exon e_start="8485" e_stop="8179"/>
          <exon e_start="7470" e_stop="7350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTA</genome_strand>
        <mrna_strand>GAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCACAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553484" ref_strand="+" ref_description="SGN-E553484 [cTSC-1-E13]">
      <seq>attttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaacagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10086" stop="7079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9786" g_stop="9190" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8179" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="904" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7470" g_stop="7379" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="995" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E553484" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>996</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9786" e_stop="9190"/>
          <exon e_start="8485" e_stop="8179"/>
          <exon e_start="7470" e_stop="7379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTA</genome_strand>
        <mrna_strand>ATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAA-CAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729571" ref_strand="+" ref_description="SGN-E729571 [LA21BH03]">
      <seq>atcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggtttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccnaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10049" stop="7900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9749" g_stop="9190" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8200" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="845" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E729571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9749" e_stop="9190"/>
          <exon e_start="8485" e_stop="8200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACA</genome_strand>
        <mrna_strand>ATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGG-TTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCNAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554291" ref_strand="+" ref_description="SGN-E554291 [cTSC-3-N14]">
      <seq>ggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagaatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10044" stop="7914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9744" g_stop="9190" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8214" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="828" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E554291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9744" e_stop="9190"/>
          <exon e_start="8485" e_stop="8214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAG-ATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTG</genome_strand>
        <mrna_strand>GGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGAATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690146" ref_strand="+" ref_description="SGN-E690146 [LH_Ea02L24]">
      <seq>ctgtaattaggctttttctatagttttgtagccattaaagcttcgattttgacaactttcagttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggttcagatttcaatgggaatcaatttcccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacagaaatttaactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgattctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgaaaaagcaggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10131" stop="7998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9831" g_stop="9190" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8298" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="830" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E690146" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9831" e_stop="9190"/>
          <exon e_start="8485" e_stop="8298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCA</genome_strand>
        <mrna_strand>CTGTAATTAGGCTTTTTCTATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAACTTTCAGTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGTTCAGATTTCAATGGGAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGAAATTTAACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGATTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAAAAAGCAGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708920" ref_strand="+" ref_description="SGN-E708920 [FA42AE12]">
      <seq>ccgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgcctcttcctaaggaggaagaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10143" stop="8025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9845" g_stop="9190" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8325" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="817" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E708920" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9845" e_stop="9190"/>
          <exon e_start="8485" e_stop="8325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACA</genome_strand>
        <mrna_strand>CCGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCCTCTTCCTAAGGAGGAAGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726244" ref_strand="+" ref_description="SGN-E726244 [LA11BA06]">
      <seq>tgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10141" stop="8029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9841" g_stop="9190" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8330" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="808" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E726244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9841" e_stop="9190"/>
          <exon e_start="8485" e_stop="8330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGA</genome_strand>
        <mrna_strand>TGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701282" ref_strand="+" ref_description="SGN-E701282 [FA15CB08]">
      <seq>taagggttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcacccctaccttttggttgtctcgtttctttgctgatgtgtggatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10151" stop="8046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9851" g_stop="9190" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8346" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="803" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E701282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9851" e_stop="9190"/>
          <exon e_start="8485" e_stop="8346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCA-CCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCT</genome_strand>
        <mrna_strand>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313451" ref_strand="+" ref_description="SGN-E313451 [cTOA-13-D1]">
      <seq>actagttgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaagctaaggaaaaggagcctttgaaagaatgcaagataattgaaggtgatgctgaagatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="9732" stop="8124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9432" g_stop="9190" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8424" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="305" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E313451" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9432" e_stop="9190"/>
          <exon e_start="8485" e_stop="8424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTG</genome_strand>
        <mrna_strand>ACTAGTTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAAGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAAGGTGATGCTGAAGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332955" ref_strand="+" ref_description="SGN-E332955 [cTOD-19-J1]">
      <seq>gcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaagatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10043" stop="8153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9743" g_stop="9190" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8485" g_stop="8453" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="587" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E332955" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9743" e_stop="9190"/>
          <exon e_start="8485" e_stop="8453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAAT</genome_strand>
        <mrna_strand>GCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAAGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322505" ref_strand="+" ref_description="SGN-E322505 [cTOB-26-O20]">
      <seq>gttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaaagatgcaagataattgagggtgatgctgangatcttccattctncactgactatgctgatagatatgtatctgctggaagtattgaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10146" stop="8883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9846" g_stop="9190" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E322505" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9846" e_stop="9190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG</genome_strand>
        <mrna_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAAGATGCAAGATAATTGAGGGTGATGCTGANGATCTTCCATTCTNCACTGACTATGCTGATAGATATGTATCTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322575" ref_strand="+" ref_description="SGN-E322575 [cTOB-26-J18]">
      <seq>gttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcagataattgagggtgatgctgaggatcttccattctcaactgactatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10146" stop="8912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9846" g_stop="9212" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E322575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9846" e_stop="9212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTG</genome_strand>
        <mrna_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGC-AGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304789" ref_strand="+" ref_description="SGN-E304789 [cLEX-10-M1]">
      <seq>gcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="10092" stop="9021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9792" g_stop="9321" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E304789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9792" e_stop="9321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTT</genome_strand>
        <mrna_strand>GCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353857" ref_strand="+" ref_description="SGN-E353857 [cTOS-10-J14]">
      <seq>tagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgtttctgttgatgcttattgtatgtgaatgggttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="23705" stop="22562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23405" g_stop="22862" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E353857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23405" e_stop="22862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCTTATTGTATGTGAATGGGTTGTTT</genome_strand>
        <mrna_strand>TAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCTTATTGTATGTGAATGGGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355487" ref_strand="+" ref_description="SGN-E355487 [cTOS-25-M1]">
      <seq>tagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctngttctggtgatgcttattgtatgtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="23705" stop="22570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23405" g_stop="22870" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E355487" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23405" e_stop="22870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCTTATTGTATGTGAATG</genome_strand>
        <mrna_strand>TAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTNGTTCTGGTGATGCTTATTGTATGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343259" ref_strand="+" ref_description="SGN-E343259 [cTOF-17-M10]">
      <seq>ctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatttcgtgttgctatgcagtcaattaaccctgtttctgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27641" stop="22589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27341" g_stop="27309" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="156" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22879" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="695" r_length="539" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E343259" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27341" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAA-CCTGTTTCTGTTGATGCTTATTGT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATTTCGTGTTGCTATGCAGTCAATTAACCCTGTTTCTGTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310164" ref_strand="+" ref_description="SGN-E310164 [cLEZ-8-C14]">
      <seq>aagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgtttctgttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27097" stop="22589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26797" g_stop="26672" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="22885" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="658" r_length="532" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E310164" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26797" e_stop="26672"/>
          <exon e_start="23416" e_stop="22885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCT</genome_strand>
        <mrna_strand>AAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335485" ref_strand="+" ref_description="SGN-E335485 [cTOE-2-K17]">
      <seq>aaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27010" stop="22597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26710" g_stop="26672" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="22886" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="570" r_length="531" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E335485" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26710" e_stop="26672"/>
          <exon e_start="23416" e_stop="22886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGC</genome_strand>
        <mrna_strand>AAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555794" ref_strand="+" ref_description="SGN-E555794 [cTSD-1-G7]">
      <seq>gctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27649" stop="22597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27349" g_stop="27309" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="164" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22889" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="692" r_length="528" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E555794" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27349" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGA</genome_strand>
        <mrna_strand>GCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745158" ref_strand="+" ref_description="SGN-E745158 [GI|47105970]">
      <seq>gattacagatctgaccactcttctctctttttattatcttcttctccaaaaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgtttctgttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27713" stop="22589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27414" g_stop="27309" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="229" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22894" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="752" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="772"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E745158" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27414" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACAGATCTGACCACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCT</genome_strand>
        <mrna_strand>GATTACAGATCTGACCACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348372" ref_strand="+" ref_description="SGN-E348372 [cTOF-27-M23]">
      <seq>ctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaattaacctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27641" stop="22595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27341" g_stop="27309" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="156" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22895" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="678" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E348372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27341" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTC</genome_strand>
        <mrna_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346560" ref_strand="+" ref_description="SGN-E346560 [cTOF-28-M2]">
      <seq>tcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtncatatgctgttgtctcttgacttaaatgaacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgttttgatctagttaaaacttgtaggggatgtagtggactatggnaaatgttaatttgacatttataatcgtgttgctatgcagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27643" stop="22603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27343" g_stop="27309" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22899" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="682" r_length="524" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E346560" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27343" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGT-CATATGCTGTTGTCTCTTGACTTAAATG-ACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATG-TTTGATCTAGTTAAAACTTGTA-GGGATGTAGTGGACTATGG-AAATGTTAATTTGACATTTAT-ATCGTGTTGCTATGCAGTCAATTAACCTG</genome_strand>
        <mrna_strand>TCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTNCATATGCTGTTGTCTCTTGACTTAAATGAACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTTGATCTAGTTAAAACTTGTAGGGGATGTAGTGGACTATGGNAAATGTTAATTTGACATTTATAATCGTGTTGCTATGCAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334762" ref_strand="+" ref_description="SGN-E334762 [cTOE-3-K22]">
      <seq>ggcggggaaaggtggtaaaggactgctagcaggaaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttacctctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggncggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgcctgttgtctcttgacttaaatgaccagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtccatgtttgatctagttaaaacttgtaggggatgtagtggactatggnaaatgttaatttgacatttataatcgtgttgctatgcagtcaattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27092" stop="22602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26792" g_stop="26672" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="22902" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="645" r_length="523" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E334762" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26792" e_stop="26672"/>
          <exon e_start="23416" e_stop="22902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGG-AAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTA-CTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGG-CGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATG-CTGTTGTCTCTTGACTTAAATGA-CAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGT-CATGTTTGATCTAGTTAAAACTTGTA-GGGATGTAGTGGACTATGG-AAATGTTAATTTGACATTTAT-ATCGTGTTGCTATGCAGTCAATTAAC</genome_strand>
        <mrna_strand>GGCGGGGAAAGGTGGTAAAGGACTGCTAGCAGGAAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACCTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGNCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCCTGTTGTCTCTTGACTTAAATGACCAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCCATGTTTGATCTAGTTAAAACTTGTAGGGGATGTAGTGGACTATGGNAAATGTTAATTTGACATTTATAATCGTGTTGCTATGCAGTCAATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203219" ref_strand="+" ref_description="SGN-E203219 [cLEB-3-N24](-)">
      <seq>gtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatgcagtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="23684" stop="22603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23384" g_stop="22908" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="493"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E203219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23384" e_stop="22908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCA</genome_strand>
        <mrna_strand>GTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347031" ref_strand="+" ref_description="SGN-E347031 [cTOF-25-O14]">
      <seq>tctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagattggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgttgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27632" stop="22614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27332" g_stop="27309" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="147" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22914" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="650" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E347031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27332" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATG</genome_strand>
        <mrna_strand>TCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGATTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724544" ref_strand="+" ref_description="SGN-E724544 [FC24BG04]">
      <seq>gatcttcttctccaccttaaagaatcctttgctctctcctctctctctctgcttaccccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacaagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcaaaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggggtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27656" stop="22622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27380" g_stop="27309" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="194" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22923" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="688" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="711"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E724544" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27380" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGT</genome_strand>
        <mrna_strand>GATCTTCTTCTCCACCTTAAAG-AATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTACCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACAAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAAAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGGGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551853" ref_strand="+" ref_description="SGN-E551853 [cTSB-2-A6]">
      <seq>gacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttatatcgtataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="23664" stop="22621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23364" g_stop="22923" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="469"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E551853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23364" e_stop="22923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGT</genome_strand>
        <mrna_strand>GACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322194" ref_strand="+" ref_description="SGN-E322194 [cTOB-24-F1]">
      <seq>actcttctctctttttattatcttcttctccaaaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttangacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27698" stop="22627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27398" g_stop="27309" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="212" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22930" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="698" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="710"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E322194" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27398" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</genome_strand>
        <mrna_strand>ACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAA-AAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTANG-ACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713436" ref_strand="+" ref_description="SGN-E713436 [FB08CE06]">
      <seq>aaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttaannnnanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27665" stop="22629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27365" g_stop="27309" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="180" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22930" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="667" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="698"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E713436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27365" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</genome_strand>
        <mrna_strand>AAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339672" ref_strand="+" ref_description="SGN-E339672 [cTOE-16-I7]">
      <seq>tcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaagaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtaaggatgtagtggactatggaaatgttaatttgacatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27643" stop="22627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27343" g_stop="27309" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22930" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="645" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="657"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E339672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27343" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</genome_strand>
        <mrna_strand>TCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAAGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAAGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339839" ref_strand="+" ref_description="SGN-E339839 [cTOF-3-G9]">
      <seq>ctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27641" stop="22627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27341" g_stop="27309" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="156" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22930" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="643" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E339839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27341" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718081" ref_strand="+" ref_description="SGN-E718081 [FC03CE06]">
      <seq>aatcggccgaattggcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatttgacattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27629" stop="22627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27329" g_stop="27309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="35" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22930" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="645" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="696"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E718081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27329" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTT</genome_strand>
        <mrna_strand>GCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345589" ref_strand="+" ref_description="SGN-E345589 [cTOF-18-E17]">
      <seq>tctctttttattatcttcttctccaaaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgancagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaagaacaatttcagcttctcagtcatgtttgatctagttaaaacttgtagggatgtagtggactatggaaatgttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27691" stop="22638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27391" g_stop="27309" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="205" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22938" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="685" r_length="480" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E345589" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27391" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGA-CAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATT</genome_strand>
        <mrna_strand>TCTCTTTTTATTATCTTCTTCTCC-AAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGANCAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAAGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225244" ref_strand="+" ref_description="SGN-E225244 [cLEL-17-D19](-)">
      <seq>catagtccactacatccctacaagttttatctagatcgaacatgactgagaagctgaaattgttcctaaatcaaaatacaggactactaatatcaaaccagatatcagagaaaacatgctaaacaccaaactgtcatttaagtcaagagacaacagcatatgaccatatttcactccttggtggttttgtttatgagtgatttgtgaatgtgagggatgacaccgccaccagcaatggtccctttaataagggtgtcaagttcctcatctccacgaatggccagctgcagatgcctgggtgtgatcctcttcaccttcagatccttgcttgcattgccagccaattcaagaacctctgctgtcaggtattccagaatagcagcagagtaaacagctgctgtggctccaactcgtccatgggctgcggttctggacttgagttgaccgtgaattctacccactggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="22650" stop="23718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22950" g_stop="23419" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E225244" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22950" e_stop="23419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTCCACTACATCCCTACAAGTTTTAACTAGATCAAACATGACTGAGAAGCTGAAATTGTTCCTAAATCAAAATACAGGACTACTAATATCAAACCAGATAACAGAGAAAACATGCTAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATTCTACCCACTGGAAACTA</genome_strand>
        <mrna_strand>CATAGTCCACTACATCCCTACAAGTTTTATCTAGATCGAACATGACTGAGAAGCTGAAATTGTTCCTAAATCAAAATACAGGACTACTAATATCAAACCAGATATCAGAGAAAACATGCTAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACCGTGAATTCTACCCACTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253553" ref_strand="+" ref_description="SGN-E253553 [cLEG-24-P1]">
      <seq>atttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctctgttatctggtttgatattagtagtcctgtattttgatttaggaacaatttcagcttctcagtcatgtttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27660" stop="22682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27360" g_stop="27309" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="175" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="22982" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="610" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E253553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27360" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="22982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCT</genome_strand>
        <mrna_strand>ATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218603" ref_strand="+" ref_description="SGN-E218603 [cLEL-18-J1](-)">
      <seq>aaatcaaaatacaggactactaatatcaacccagataccagagaaaacatgctaaacaccaaactgtcatttaagtcaagagacaacagcatatgaccatatttcactccttggtggttttgtttatgagtgatttgtgaatgtgagggatgacaccgccaccagcaatggtccctttaataagggtgtcaagttcctcatctccacgaatggccagctgcagatgcctgggtgtgatcctcttcaccttcagatccttgcttgcattgccagccaattcaagaacctctgctgtcaggtattccagaatagcagcagagtaaacagctgctgtggctccaactcgtccatgggctgcggttctggacttgagttgacggtgaatactacccactggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="22717" stop="23718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23017" g_stop="23419" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E218603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23017" e_stop="23419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAATACAGGACTACTAATATCAAACCAGATAACAGAGAAAACATGCTAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATTCTACCCACTGGAAACTA</genome_strand>
        <mrna_strand>AAATCAAAATACAGGACTACTAATATCAACCCAGATACCAGAGAAAACATGCTAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATACTACCCACTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290458" ref_strand="+" ref_description="SGN-E290458 [cLES-20-H24]">
      <seq>tttattatcttcttctccaaaaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaacgattgctagcccgaaagacaacagctgctgctgctgcagcatccaacactgagaaagacaagaaaaggccagtttctaagtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgcctactcatgtccagaaccgcatcccatggacgagttggagccacagcaactgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaacgatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaactcgacacccttattaaagggaccatcgctggcggcggtgtcatccctcacattcacaaatcactcataaacaaaaccacccaggagtgaaatatggtcatatgctgttgtctcttgactcaaatgacagattggtgtttagcatgtatgctctgttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27685" stop="22749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27385" g_stop="27309" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="200" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23049" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="568" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E290458" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27385" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCT</genome_strand>
        <mrna_strand>TTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAACGATTGCTAGCCCGAAAGACAACAGCTGCTGCTGCTGCAGCATCCAACACTGAGAAAGACAAGAAAAGGCCAGTTTCTAAGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGCCTACTCATGTCCAGAACCGCATCCCATGGACGAGTTGGAGCCACAGCAACTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAACGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTCGACACCCTTATTAAAGGGACCATCGCTGGCGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCCAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTCAAATGACAGATTGGTGTTTAGCATGTATGCTCTGTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337045" ref_strand="+" ref_description="SGN-E337045 [cTOE-20-P11]">
      <seq>ctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatgacagtttggtgtttagcatgttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27641" stop="22756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27341" g_stop="27309" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="156" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23056" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="517" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E337045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27341" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294259" ref_strand="+" ref_description="SGN-E294259 [cLET-14-K14]">
      <seq>aggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctggtgtctcttgacttaaatgacagtttggtgtttagcatgttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="26995" stop="22756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26695" g_stop="26672" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="23056" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="385" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E294259" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26695" e_stop="26672"/>
          <exon e_start="23416" e_stop="23056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCT</genome_strand>
        <mrna_strand>AGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGGTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277562" ref_strand="+" ref_description="SGN-E277562 [cLER-6-C20]">
      <seq>tcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgatgtctcttgacttaaatgacagtttggtgtttagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27101" stop="22764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26800" g_stop="26672" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="23064" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="482" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E277562" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26800" e_stop="26672"/>
          <exon e_start="23416" e_stop="23064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATG</genome_strand>
        <mrna_strand>TCAAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGATGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225363" ref_strand="+" ref_description="SGN-E225363 [cLEL-17-D19](-)">
      <seq>taaacaccaaactgtcatttaagtcaagagacaacagcatattgaccatatttcactccttggtggttttgtttatgagtgatttgtgaatgtgagggatgacaccgccaccagcaatggtccctttaataagggtgtcaagttcctcatctccacgaatggccagctgcagatgcctgggtgtgatcctcttcaccttcagatccttgcttgcattgccagccaattcaagaacctctgctgtcaggtattccagaatagcagcagagtaaacagctgctgtggctccaactcgtccatgggctgcggttctggacttgagttgacggtgaatactaaccactggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="22769" stop="23718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23069" g_stop="23419" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E225363" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23069" e_stop="23419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATA-TGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATTCTACCCACTGGAAACTA</genome_strand>
        <mrna_strand>TAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATTGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATACTAACCACTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281623" ref_strand="+" ref_description="SGN-E281623 [cLER-14-K11]">
      <seq>tatcctttgctctctcctgtctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgctgttgtctcttgacttaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27657" stop="22783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27357" g_stop="27309" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="172" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23083" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="506" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E281623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27357" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGA</genome_strand>
        <mrna_strand>TATCCTTTGCTCTCTCCTGTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279745" ref_strand="+" ref_description="SGN-E279745 [cLER-5-N12]">
      <seq>tctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaagggaccattgctggtggcggtgtcatccctcacattcacaaatcactcataaacaaaaccaccaaggagtgaaatatggtcatatgcttgtgtctcttgacttaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27632" stop="22783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27332" g_stop="27309" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="147" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23083" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="481" r_length="334" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E279745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27332" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGA</genome_strand>
        <mrna_strand>TCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTTGTGTCTCTTGACTTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288590" ref_strand="+" ref_description="SGN-E288590 [cLES-8-D12]">
      <seq>tctctctttttattatcttcttctccaaaaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagtgggtagaattcaccgtcaactcaagtccagaaccgcagcccatggacgagttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaattggctggcaatgcaagcaaggatctgaaggtgaagaggatcacacccaggcatctgcagctggccattcgtggagatgaggaacttgacacccttattaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27693" stop="22891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27393" g_stop="27309" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="207" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23191" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="433" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E288590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27393" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAG</genome_strand>
        <mrna_strand>TCTCTCTTTTTATTATCTTCTTCTCC-AAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724676" ref_strand="+" ref_description="SGN-E724676 [FC24DD06]">
      <seq>aaaaatttatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgctgcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagtttccagggggtaaaattcaccgtcaactcaagtccagaaccgcatcccatggacaatttggagccacagcagctgtttactctgctgctattctggaatacctgacagcagaggttcttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27664" stop="22992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27364" g_stop="27309" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="179" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23292" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="304" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E724676" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27364" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
          <exon e_start="23416" e_stop="23292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAGGTAATGTGATTTTTTTTCAATTACTGGAGAAATGCAGCAAGTCAATGTCTTTTGCACTATAGATTTAGGTTTGGTTGTGACAGTTTTTCTGTTGAAGGGTTTTAGAGAACCTGGTTGAGAATTGCTTTCCCTGTTCATACTGTGGTTGCTTGTTCTGTTTCATTAGGTTTGTGGATGTGTTTCTTTTGTTTCTAAGTTGACTTTGAGAATATAATTTGACAAGTCGAAGACTATTAGCTCTTTATTCAGGTGCATGCATGTGTGTGTCTTATACAAATCACAATGCGAGCAATAATAGTACAGGTTTGACAATGATAAATGCCATTGATGTGATTTGTGAAGTTCCGGTCTGTCTAATCGTCTTTTGAAATGTAATTTGCCCGTGTCTCAATTTCTTTATAAGGCTAAATAACACATGGAACTTTTGTGGATATGAGGATGCATAGCTGCATGTGTGGGCATACTAGGTGAGACAAGATTAGGAATGAAGATATTTGGGACACATTAGGAGTGACCTTTGTGATGGACAAGATGTGAGGTGAGATTGAGATTGTCTGTATATGTGAAGAAGAAACATGCATACACCTTGTTAAGGAGGCGTTGGAGGTTGACATGGATGGGTTTAATTAGGGGTACAGTTAATTTGGGTAAGTATTGGGGAGATGTGACTCGGCAGGGCATGACACAATTTTAGCTTGATGAGGACATGGACCTTACGTAGGAGGATACATAGGTATCTAGTTAGGGTAAATAGTTAAGATAGTTGACAATTGTCTTTCTCCTTACAGGGAGGGGCTTTGTGGTTAGATAGTACTATATTTATTTGCAGAATTTCTTGTTCTTTAATTACTGCTACTACATGTTTCTTGGTGCTTGGTCATTACATTATTTTGCTTTGTACTGTTTGTTACACTTGTTTATTTGTTATGCGTTGTTCTATCTCTATATTGTCCTTTTCAAACTGTCATGTTATGTGTTGCTTGAGCCTAGGGTCTTTCAGAAAACATCCTCTCTATCTCCATAGGTTTAAAGTTTTTGTACACTACCCTTCCCAAAACGTGCGACAATACTATGGTATGTTGTTGAAGGTGTAATTTACATTGTTGATATATGACTAAAATCTCTTTAGTTTTGGCATGACACTCATCTTGAGTGTGCAAATTTTAGAATGAACATGCTACAATATCATGATGATGTACATAGAATGTTGTCTCATTCACGTGACATTCAATTTGCATAAATGATAGTGAGGGTACATATTGCACCTTAATGGTAGGGTAAAATATGCTTTTACTATACCTTCCCCAGACTCTACTTATATGATTACATTGGATATTTTGTTGTGAAATTGTCCAGGAAAGTCACTTGCACAGTAAAACACCTTAACTTTGGAGGTGGCCTCTTTGCGATTGCCCCTTGTTTGTCTTTTTAAAGCTCAGCTGTGAAGTGCACACTCCAAACTAGCTTCTACCTCAGAAAATTCTAGTAAATTCTATGAAATCTGTGTCCTATCTTTCACTCTTGTGTTCACAAGAAATAATGGCAATTTGAATCACCATCCCACGTTGCTTCTCTGACTTCACCTTGCTAAATAATCTCATACTCAGTCTGATCGGTTCTTGTTAATACCAATTCAACCACATAATCAATTAAATCTGGGTCCTTTTCTCATCAGTTCTACTTTTTCTTTGGTAAAAACAACTGCAAATTATTCTTATTATTAACCTTCATGTACCACCATAAGTTTTTGATCCACAAATAAACAATTCAATCCCAAGAATAGTTCAACTACACCCATCCAGGAACATTTTGGGTTTCTTCTTCATCGACTCTGGTTGAATTGTTATTCATGTTCCTACATTACCCATGTTTAGCATTTCAATACTCTCCCAAACTTTTCCAGACAACTTCATTTTGCAGTTCAACACACCCAAGAAATAAAAAAATGTTCAACTTGGGTAAGATGATGTTTTCATACATGTATTGCATAATGCAAGAAATATCACATTGCTATGATGATTCTGTTCACAATTGGTGCTCCTTTTGCTATCTGGAAGTAGTGAGTTTTTCTACTTGGGTTTCAGATCTGAGAGTGGGCAGAGGTTGTTGGGTTTCTTTGCATTATTTGTTGCAGTGATGGGGTGGTGGCAGATTCGAAATGGTTGTAGGTTCTGGTGGGATGAAAGTAATGTGTACGAGGAATGGGAGGTGGTGACATGGTGGCACTGACTATGTTGTCCGGAAAGAGAGGATTGAGGAGAAGAATAAAATAAAACAAACAGAAGAGAGAATTTAAAAAATTGAAGGAGAAGAGCCCATAAAAAAGAATGAAGTTTTATTAGTTATATATCATCCTGTTAAACGATAACACTTGAATAATTAATTACATTTTCAAGTGTGTAAAGTGACTGAGCTAATGTGTAGACAGCTGAAAGCTGCTACATAAACAGATGCCTGTTAACTTGTTAATGCATACCTTTCTTGGCCGTTTGGCTAAGATCAAGTGAAGCATCTCTTCTTATCAGTTTAATATCTGGTATGTGGACCATTGGTTCGCATGATATTATCTCTATTTTTTTTGAGGGGAAAGGTCCATCAGGATAGCCTGCTATCCGGGCCTTCGTGCGTTGCCTAGGTGTTATGCAGCCCAGGCCTGGTGCACCCCACAAATTCAAGTAAAAAAAAATCATCAGGAAATTGTCTAAATCTGTATAGTTCCTCATAACAAGTGATTTGTATTTCTCATGGATACTAAAGGCAACATCTCTCCACCTAAACATATAAAATCCCAGCAATCTTTGTTATAATTCCAAGCAAATTAAGTTGGAATAGATGAATATTTAGTAATTAAAATAATTTGCTTGTAGCATCAATCCATTATTGGATATTTATTTGTGTTGCAAGAATGAAAGATGTGTAGTTTGAGAAATTAGTAATGAAAAAGCAGAAACTGATATGTTCACAAAGTTGAGTATGTAAAGTGACTTACTGGATAAGTTTAGGGTGCAAAATATGTATTTTCCCAAGTGGTAATATTAAATGTGGATCTCTTGCTCTAATGACGTCTTTCCGCTAAGGTTATGATTGTATATGTCATCCTGAATGAGTTTCTTGAACATTTTTGTTGTCGTTGCATTTACCACAATGAAAAGAAGTCCTTTATGATTGGTGATATTATTAGTAGTATATTTACCCCCAAACAATGTTAAATTATGCTTGATATGATTTTTCTTGGACATGTTTTGGGGATCATAGTTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATT</genome_strand>
        <mrna_strand>AAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCTGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGGGGGTAAAATTCACCGTCAACTCAAGTCCAGAACCGCATCCCATGGACAATTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313007" ref_strand="+" ref_description="SGN-E313007 [cTOA-14-J10]">
      <seq>agatctgaccactcttctctctttttattatcttcttctccaaaaaaaatgtatcctttgctctctcctctctctctctgcttagcccaaaagttcaaagatggcggggaaaggtggtaaaggattgctagcaggaaagacaacagctgctgctgctgcagcagccaacaaggagaaagacaagaaaaggccagtttctaggtcatctcgagcaggtcttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="27708" stop="26372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27408" g_stop="27309" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26794" g_stop="26672" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="223" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E313007" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27408" e_stop="27309"/>
          <exon e_start="26794" e_stop="26672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTGACCACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAGGTATGTTCTCTTTCTTCTTCTTCTTCTTCTCTCTTTAGTTACCCAGTTTGCTTGTTAGTTGCTGAATGAGATTTGGTTAAAAACCCTAATTTTTTCTTTGGGTAACTTTTTGTTTTCGTTTTTCGTTGTGGGGTTCTCTTTAATTACTAGTTTACTTGTTGGTGAATGAGATTTGGGTAAAATCCCTAATTTTTTCTTTGGGTATTTTCTTGATTTCGTTGTTCATTGTGGGGTTTTCGTATTTTTTTTCTTCTAGGGGTGTTTCCGTTTTGAATTGTTTGTAAAACCCTTTTTCGGTGTTTGGATTTTAGTATTTTTGTGCTGGGTTTTGTTAGAATTAGTGGTATATGGAAGATCTGAGTTTAATTAGTTGATTTTACGGGGAAAACTCAGATCTTTATTCTTTACTTCATCTTGGGTTTATCGTTGACGCAAATTCTGGGTTTATACTGTTCAAGATTGAAGAAACCAGATAACACAAATACTGACCTTTTGTTTTTTGTTTTTTTATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG</genome_strand>
        <mrna_strand>AGATCTGACCACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATGTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721840" ref_strand="+" ref_description="SGN-E721840 [FC15BG12]">
      <seq>gggcgattggcggccaatcggccgaattgaccgcactaatactctccactctcaacccacacctttattgccctttctctctctaggatttttatgttatcttcatcggtcatatcgccggaaatgattattcaggcaatcgattttgttagtattgagtgtcggtgtgatgatgtcatgtcgtgtgtccgtcggaaaatcggcgagttttagccgtcgtctcgtgtttgttgtaccttaagcgaaagataaagactttctaggtttagcagtgttttcaagttattccatgctaattttctactcaaaataatggttttttgacggtgtgaaaaggtaatttgaaatcgattcctgtttgaaatttaggaagattgtgaacttgaattttttagtgtaagaatttgtggttatgccttttcctatgaagattcaacctgttgacttcagtactgtggaagaatcgagtcgatgtgactcgtttaagccggttccgaagtcacggttcaagcggctatttgagaggcaattttcagggctattgagatcatcggcgccggagaagctggttaccggtgaggatttgattgggaataagaaggatgcgtctgaagaactggagcctagttctgtttgtttggctaaaatggtgcagacttttattgaggaaggtgaggataagcatcggtgcaatcgaagccgatgcagttgctttaattgtaatggaactgaaagctcagaggaggagaatgattcagtcaattgcttcggtgaatcaaatcaaaattgctctagcgatgcttgtgaaattctcaagagtgtggtgtcttgtccttctgtccttgaaaggaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="32595" stop="34251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32904" g_stop="33689" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="817" r_length="786" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33690" i_stop="33914" i_length="225">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33915" g_stop="33951" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="854" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E721840" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32904" e_stop="33689"/>
          <exon e_start="33915" e_stop="33951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACTAATACTCTACACTCTCAACCCACACCTTTATTGCCCTTTCTCTCTCTAGGATTTTTATGTTATCTTCATCGGTCATATCGCCGGAAATGATTATTCAGGCAATCGATTTTGTTAGTATTGAGTGTCGGTGTGATGATGTCATGTCGTGTGTCCGTCGGAAAATCGGCGAGTTTTAGCCGTCGTCTCGTGTTTGTTGTACCTTAAGCGAAAGATAAAGACTTTCTAGGTTTAGCAGTGTTTTCAAGTTATTCCATGCTAATTTTCTACTCAAAATAATGGTTTTTTGACGGTGTGAAAAGGTAATTTGAAATCGATTCCTGTTTGAAATTTAGGAAGATTGTGAACTTGAATTTTTTAGTGTAAGAATTTGTGGTTATGCCTTTTCCTATGAAGATTCAACCTGTTGACTTCAGTACTGTGGAAGAATCGAGTCGATGTGACTCGTTTAAGCCGGTTCCGAAGTCACGGTTCAAGCGGCTATTTGAGAGGCAATTTTCAGGGCTATTGAGATCATCGGCGCCGGAGAAGCTGGTTACCGGTGAGGATTTGATTGGGAATAAGAAGGATGCGTCTGAAGAACTGGAGCCTAGTTCTGTTTGTTTGGCTAAAATGGTGCAGACTTTTATTGAGGAAGGTGAGGATAAGCATCGGTGCAATCGAAGCCGATGCAGTTGCTTTAATTGTAATGGAACTGAAAGCTCAGAGGAGGAGAATGATTCAGTCAATTGCTTCGGTGAATCAAATCAAAATTGCTCTAGCGATGCTTGTGAAATTCTCAAGGTATTGCATGTGCTACGGCCATTTTCTGTCTCTAATTTCCATTTCCCGGTTCTGAATTTACCTAATAATTGTCTTTGCAGCAAACAAATAGCTATCTTTACATACAAATTTGTAATTCAATTAATTTTTTTTCCACGTATGCTGTAAATTTCCGTCGAATGAGTATTTTGTATCAGCATGCAGAGTCCGTTCTGTCATAAAAAAGTTCTTATTTTTTTGGTGTAGAGTGTGGTGTCTTGTCCTTCTGTCCTTGAAAGGAACG</genome_strand>
        <mrna_strand>CGCACTAATACTCTCCACTCTCAACCCACACCTTTATTGCCCTTTCTCTCTCTAGGATTTTTATGTTATCTTCATCGGTCATATCGCCGGAAATGATTATTCAGGCAATCGATTTTGTTAGTATTGAGTGTCGGTGTGATGATGTCATGTCGTGTGTCCGTCGGAAAATCGGCGAGTTTTAGCCGTCGTCTCGTGTTTGTTGTACCTTAAGCGAAAGATAAAGACTTTCTAGGTTTAGCAGTGTTTTCAAGTTATTCCATGCTAATTTTCTACTCAAAATAATGGTTTTTTGACGGTGTGAAAAGGTAATTTGAAATCGATTCCTGTTTGAAATTTAGGAAGATTGTGAACTTGAATTTTTTAGTGTAAGAATTTGTGGTTATGCCTTTTCCTATGAAGATTCAACCTGTTGACTTCAGTACTGTGGAAGAATCGAGTCGATGTGACTCGTTTAAGCCGGTTCCGAAGTCACGGTTCAAGCGGCTATTTGAGAGGCAATTTTCAGGGCTATTGAGATCATCGGCGCCGGAGAAGCTGGTTACCGGTGAGGATTTGATTGGGAATAAGAAGGATGCGTCTGAAGAACTGGAGCCTAGTTCTGTTTGTTTGGCTAAAATGGTGCAGACTTTTATTGAGGAAGGTGAGGATAAGCATCGGTGCAATCGAAGCCGATGCAGTTGCTTTAATTGTAATGGAACTGAAAGCTCAGAGGAGGAGAATGATTCAGTCAATTGCTTCGGTGAATCAAATCAAAATTGCTCTAGCGATGCTTGTGAAATTCTCAAG.................................................................................................................................................................................................................................AGTGTGGTGTCTTGTCCTTCTGTCCTTGAAAGGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339660" ref_strand="+" ref_description="SGN-E339660 [cTOE-16-E21]">
      <seq>tgttatcttcatcggtcatatcgccggaaatgattattcaggcaatcgattttgttagtattgagtgtcggtgtgatgatgtcatgtcgtgtgtccgtcggaaaatcggcgagttttagccgtcgtctcgtgtttgttgtaccttaagcgaaagataaagactttctaggtttagcagtgttttcaagttattccatgctaattttctactcaaaataatggttttttgacggtgtgaaaaggtaatttgaaatcgattcctgtttgaaatttaggaagattgtgaacttgaattttttagtgtaagaatttgtggttatgccttttcctatgaagattcaacctgttgacttcagtactgtggaagaatcgagtcgatgtgactcgtttaagccggttccgaagtcacggttcaagcggctatttgagaggcaattttcagggctattgagatcatcggcgccggagaagctggttaccggtgaggatttgattgggaataagaaggatgcgtctgaagaactggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="32667" stop="33796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32967" g_stop="33496" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E339660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32967" e_stop="33496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATCTTCATCGGTCATATCGCCGGAAATGATTATTCAGGCAATCGATTTTGTTAGTATTGAGTGTCGGTGTGATGATGTCATGTCGTGTGTCCGTCGGAAAATCGGCGAGTTTTAGCCGTCGTCTCGTGTTTGTTGTACCTTAAGCGAAAGATAAAGACTTTCTAGGTTTAGCAGTGTTTTCAAGTTATTCCATGCTAATTTTCTACTCAAAATAATGGTTTTTTGACGGTGTGAAAAGGTAATTTGAAATCGATTCCTGTTTGAAATTTAGGAAGATTGTGAACTTGAATTTTTTAGTGTAAGAATTTGTGGTTATGCCTTTTCCTATGAAGATTCAACCTGTTGACTTCAGTACTGTGGAAGAATCGAGTCGATGTGACTCGTTTAAGCCGGTTCCGAAGTCACGGTTCAAGCGGCTATTTGAGAGGCAATTTTCAGGGCTATTGAGATCATCGGCGCCGGAGAAGCTGGTTACCGGTGAGGATTTGATTGGGAATAAGAAGGATGCGTCTGAAGAACTGGAGCC</genome_strand>
        <mrna_strand>TGTTATCTTCATCGGTCATATCGCCGGAAATGATTATTCAGGCAATCGATTTTGTTAGTATTGAGTGTCGGTGTGATGATGTCATGTCGTGTGTCCGTCGGAAAATCGGCGAGTTTTAGCCGTCGTCTCGTGTTTGTTGTACCTTAAGCGAAAGATAAAGACTTTCTAGGTTTAGCAGTGTTTTCAAGTTATTCCATGCTAATTTTCTACTCAAAATAATGGTTTTTTGACGGTGTGAAAAGGTAATTTGAAATCGATTCCTGTTTGAAATTTAGGAAGATTGTGAACTTGAATTTTTTAGTGTAAGAATTTGTGGTTATGCCTTTTCCTATGAAGATTCAACCTGTTGACTTCAGTACTGTGGAAGAATCGAGTCGATGTGACTCGTTTAAGCCGGTTCCGAAGTCACGGTTCAAGCGGCTATTTGAGAGGCAATTTTCAGGGCTATTGAGATCATCGGCGCCGGAGAAGCTGGTTACCGGTGAGGATTTGATTGGGAATAAGAAGGATGCGTCTGAAGAACTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245489" ref_strand="+" ref_description="SGN-E245489 [cLEF-43-F11]">
      <seq>caccagttctaatgccaatagcatcaaactctacttctgaacctggcactgcttgtaaaaccacaaaagaagccataaaggaagagacttcagaggtttttcgcggtgagatgaatctggtttttggaggaaagagcagtcctttggcggataataaccccaagagtgcgggtacgtctcctctatttgcttgtgatgatgaaaagaacctggcggtgaagctaggtgatatttttgaaggaaaaagcagtcctttggcagagaacaacaccaagagagcgagtacatcatctctatttgcttgtgacattgaaaagaacgctatggcagcgcagctaggtgaaccactagaaatcaaacccaaggattcaagcaattgtgccaggaagatgactggtttaacctctctgattgaagaccacacctaaaattttgacctatttcctaacctttttgtcaactgttgtttgctttttatatgttttgagctgaaaccccccgtgtgttttagcatttggggccttatttgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="34630" stop="35763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34930" g_stop="35463" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E245489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34930" e_stop="35463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGTTCTAATGCCAATAGCATCAAACTCTACTTCTGAACCTGGCACTGCTTGTAAAACCACAAAAGAAGCCATAAAGGAAGAGACTTCAGAGGTTTTTCGCGGTGAGATGAATCTGGTTTTTGGAGGAAAGAGCAGTCCTTTGGCGGATAATAACCCCAAGAGTGCGGGTACGTCTCCTCTATTTGCTTGTGATGATGAAAAGAACCTGGCGGTGAAGCTAGGTGATATTTTTGAAGGAAAAAGCAGTCCTTTGGCAGAGAACAACACCAAGAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACT</genome_strand>
        <mrna_strand>CACCAGTTCTAATGCCAATAGCATCAAACTCTACTTCTGAACCTGGCACTGCTTGTAAAACCACAAAAGAAGCCATAAAGGAAGAGACTTCAGAGGTTTTTCGCGGTGAGATGAATCTGGTTTTTGGAGGAAAGAGCAGTCCTTTGGCGGATAATAACCCCAAGAGTGCGGGTACGTCTCCTCTATTTGCTTGTGATGATGAAAAGAACCTGGCGGTGAAGCTAGGTGATATTTTTGAAGGAAAAAGCAGTCCTTTGGCAGAGAACAACACCAAGAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711293" ref_strand="+" ref_description="SGN-E711293 [FB01CD07]">
      <seq>ctctttactctacttctgaacctggcactgcttgtaaaaccacaaaagaagccataaaggaagagacttcagaggtttttcgcggtgagatgaatctggtttttggaggaaagagcagtcctttggcggataataaccccaagagtgcgggtacgtctcctctatttgcttgtgatgatgaaaagaacctggcggtgaagctaggtgatatttttgaaggaaaaagcagtcctttggcagagaacaacaccaagagagcgagtacatcatctctatttgcttgtgacattgaaaagaacgctatggcagcgcagctaggtgaaccactagaaatcaaacccaaggattcaagcaattgtgccaggaagatgactggtttaacctctctgattgaagaccacacctaaaattttgacctatttcctaacctttttgtcaactgttgtttgctttttatatgttttgagctgaaaccccccgtgtgttttagcatttggggccttatttgaaactacggaccaactgcctactggtttatctcggcggtctcccttcacattttatagtaagggtctatgagtccatgtcactaatacaaacttacttagtatcaagagactagtaaaggagaactggtaattgtgttgtcagttcagttctttgatatttttccacagaagtgttttgcataagtgtttatcgtagcaaacacttgttagcttgtactatgttttactgatatgatgataataaagtctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="34657" stop="36011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34951" g_stop="35711" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E711293" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34951" e_stop="35711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACTCTACTTCTGAACCTGGCACTGCTTGTAAAACCACAAAAGAAGCCATAAAGGAAGAGACTTCAGAGGTTTTTCGCGGTGAGATGAATCTGGTTTTTGGAGGAAAGAGCAGTCCTTTGGCGGATAATAACCCCAAGAGTGCGGGTACGTCTCCTCTATTTGCTTGTGATGATGAAAAGAACCTGGCGGTGAAGCTAGGTGATATTTTTGAAGGAAAAAGCAGTCCTTTGGCAGAGAACAACACCAAGAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACTACGGACCAACTGCCTACTGGTTTATCTCGGCGGTCTCCCTTCACATTTTATAGTAAGGGTCTATGAGTCCATGTCACTAATACAAACTTACTTAGTATCAAGAGACTAGTAAAGGAGAACTGGTAATTGTGTTGTCAGTTCAGTTCTTTGATATTTTTCAACAGAAGTGTTTTGCATAAGTGTTTATCGTAGCAAACACTTGTTAGCTTGTACTATGTTTTACTGATATGATGATAATAAAGTCTGGG</genome_strand>
        <mrna_strand>CTCTTTACTCTACTTCTGAACCTGGCACTGCTTGTAAAACCACAAAAGAAGCCATAAAGGAAGAGACTTCAGAGGTTTTTCGCGGTGAGATGAATCTGGTTTTTGGAGGAAAGAGCAGTCCTTTGGCGGATAATAACCCCAAGAGTGCGGGTACGTCTCCTCTATTTGCTTGTGATGATGAAAAGAACCTGGCGGTGAAGCTAGGTGATATTTTTGAAGGAAAAAGCAGTCCTTTGGCAGAGAACAACACCAAGAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACTACGGACCAACTGCCTACTGGTTTATCTCGGCGGTCTCCCTTCACATTTTATAGTAAGGGTCTATGAGTCCATGTCACTAATACAAACTTACTTAGTATCAAGAGACTAGTAAAGGAGAACTGGTAATTGTGTTGTCAGTTCAGTTCTTTGATATTTTTCCACAGAAGTGTTTTGCATAAGTGTTTATCGTAGCAAACACTTGTTAGCTTGTACTATGTTTTACTGATATGATGATAATAAAGTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713024" ref_strand="+" ref_description="SGN-E713024 [FB06CA09]">
      <seq>gagagcgagtacatcatctctatttgcttgtgacattgaaaagaacgctatggcagcgcagctaggtgaaccactagaaatcaaacccaaggattcaagcaattgtgccaggaagatgactggtttaacctctctgattgaagaccacacctaaaattttgacctatttcctaacctttttgtcaactgttgtttgctttttatatgttttgagctgaaaccccccgtgtgttttagcatttggggccttatttgaaactacggaccaactgcctactggtttatctcggcggtctcccttcacattttatagtaagggtttatgagtccatgtcactaatacaaacttacttagtatcaagagactagtaaaggagaactggtaattgtgttgtcagttcagttctttgatatttttcaacagaagtgttttgcataagtgtttatcgtagcaaacacttgttagcttgtactatgttttactgatatgatgataataaagtctgggactattgctgtgtaagttcctgtttatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="34904" stop="84231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35204" g_stop="35756" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E713024" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35204" e_stop="35756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACTACGGACCAACTGCCTACTGGTTTATCTCGGCGGTCTCCCTTCACATTTTATAGTAAGGGTCTATGAGTCCATGTCACTAATACAAACTTACTTAGTATCAAGAGACTAGTAAAGGAGAACTGGTAATTGTGTTGTCAGTTCAGTTCTTTGATATTTTTCAACAGAAGTGTTTTGCATAAGTGTTTATCGTAGCAAACACTTGTTAGCTTGTACTATGTTTTACTGATATGATGATAATAAAGTCTGGGACTATTGCTGTGTAAGTTCCTGTTTATGTACATTGTGAGTCCTCA</genome_strand>
        <mrna_strand>GAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACTACGGACCAACTGCCTACTGGTTTATCTCGGCGGTCTCCCTTCACATTTTATAGTAAGGGTTTATGAGTCCATGTCACTAATACAAACTTACTTAGTATCAAGAGACTAGTAAAGGAGAACTGGTAATTGTGTTGTCAGTTCAGTTCTTTGATATTTTTCAACAGAAGTGTTTTGCATAAGTGTTTATCGTAGCAAACACTTGTTAGCTTGTACTATGTTTTACTGATATGATGATAATAAAGTCTGGGACTATTGCTGTGTAAGTTCCTGTTTATGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712854" ref_strand="-" ref_description="SGN-E712854 [FB06AA09]">
      <seq>ttttttttttttttttttttttttttttttttacccaaaaaactgaggactcacaatgtacataaacaggaacttacacagcaatagtcccagactttattatcatcatatcagtaaaacatagtacaagctaacaagtgtttgctacgataaacacttatgcaaaacacttctgttgaaaaatatcaaagaactgaactgacaacacaattaccagttctcctttactagtctcttgatactaagtaagtttgtattagtgacatggactcatagacccttactataaaatgtgaagggagaccgccgagataaaccagtaggcagttggtccgtagtttcaaataaggccccaaatgctaaaacacacggggggtttcagctcaaaacatataaaaagcaaacaacagttgacaaaaaggttaggaaataggtcaaaattttaggtgtggtcttcaatcagagaggttaaaccagtcatcttcctggcacaattgcttgaatccttgggtttgatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107730" stop="34978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37876" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.680"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="36886" i_length="990">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36885" g_stop="36877" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="34" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36876" i_stop="35766" i_length="1111">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35765" g_stop="35278" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="522" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E712854" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37876"/>
          <exon e_start="36885" e_stop="36877"/>
          <exon e_start="35765" e_stop="35278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTGAAATTATTATTTTTTATATTCTTCGTATCTAATGACTGACTACTGACTAATGGTGGGGTTCAAACTTATTAAGTCACCATTCTTCTATTTTGGTCTTAGTGTGAGGTCGTTTAGAAATTTAGAATTATAATACGTCACTTGTAAAATTTATTTTTTTTCTATTTTTATTGAAAGAAAAATTGTTTTTTCATTATTTTTTTAATCAACTTATTTTTTTTCTATAGAAAGTGTTTATCAAAAGTTTTGTTCACTCACAAATATATCCTTTTCTTTTTTAATCGAACACACCCAAAGTGTTTGCTTAAAAGAATTAAATAAAATTGAATATCTAAATTAAATATTTAAACAAATTTGAGAAGATAATTAATATATTAAGTCAAAAGAAAATAAAGGCCTTTTCCTTAGCAAACCAAAAGTAACTTAATTTAAACAAATAAAATAAAAAATACTTTGCCCAAGACAACAATTTCCTGAATAAGTTGCAGAATAACTTTAGTGTAAAATTTAATAATAAAATAACACGTCAAGACAAAAAGAAATTATTTAAGTCATCAAAAATATTAATTCCTTAAGTCAGCAGCTTTTTTTAAAAAAAAAAATCCAAGAGTAATCATTATATTCTCTGCAAATTACAAAAGAATTAAACCATCATACTATAAGATCACCTCTTTATATAAACTATACTATATAATTTTTATATTAATATTTATGCATTAAAAGTGCAGCATTCTAGATCTATAATGAACTTATTTAATTCATTACTACCTCAATACTATAATTTTTCCGCCACCTTATCCATTTATTAAATGATTTTTCCTTTAAAGCAACGGATTTAATAGAGATTTTACTATTTAGTCACCAAAACAAAATGCATTAATATTTTATTTTTCAGAATTATCTTCTTTTTAATAGAGTTTTAATTGTTTCTAAATCTTCGAATAATGACTATATCTATGGAATTTGGGAGAATCAAAAGGATAATATCATAAATTACTTTTTAAGTAGTATTTTTAAATATCTTTTTTAAAGAATATGTCACAATCCAATAATTCATTTATATTGAATTAGATAGAGTACCATTATTAGCTTTTATTTCTATGGAAATATATATACCACGAAAATTGGTTATAGCTTGAGTTGTTAGCCCAAAATGATAGTACGACTTTACAATTCTTATTCCACTATAAATTTTAAGGAGTTTTTAAATACCTCAAATTAATTTTACGAAGTATTTACGGTCTCCCACCAGCAATAGGTATCAATTAACTCTATTTATCAAGGTTCTCATTTTATTAATCACTATGCATACTTGATTCCTCAACTCAAATAGCTTATTAACAGTTCATGTTTACACTTTACAACAACCAAACTAATATAGTAAAGATTTTTATACGTACACTTGTAAAATCAAATTGTTTTATATTAGATAAATATCATAACAATGTCAAAGATTACCACGGGCTCTCTTGGCCACCCACGACCTTGGCTTTTTAGAGAATTCCGCTTCTGTGTCGTGAGACTTGTAGCTCGGCAGTCCACCGGTTGAGTTTGTTTATCCTTCCAATTTCGAGTGTCTTCATGGATAGTTATAGCGGTCCATAGACCCGAGATGTATCTTTGGGAGGGGGGGGTTTGGATATAGTCCCTTCCAGGAAGTGACCGTTTAGTCCATGGTCCATTGGATGGTCGGTGCAAGGCCAAAAATTGGAACACATTGATTCCACTCGTTCCCGTCTTTCGCTTCAGGGCCTGTAGTACTCCATACTGTCGGGCAGCGAAGCTTACCCTTGTTCTCTAATTATGAGAGTCCTTTTATGATAAGATAAAAGAGTAGTGGTGAAAAAATTGCACCAAGAGTAGTGAAATTTTACCTAACGGCTAACGCACGCATTAGGTTGTGAGACAAAAAAAAAAAGAAGTTAAAATTTCACCGAAAGTGTTGATAAAATAGCTCACTATGGAGTAAAGTTGCACCTCCATTCTACGCAATGCATCAGACTTTATTGTGTTCCACTGCACCTACTAGAATTTCATGTCTTTTTCTCACCAGTGGATGATACTAAAAGTATCCAACATTATTTAATAAAGAACAGAGCAAGCACGATGAACTTTCAAAATCAAATACCCAAAAAACTGAGGACTCACAATGTACATAAACAGGAACTTACACAGCAATAGTCCCAGACTTTATTATCATCATATCAGTAAAACATAGTACAAGCTAACAAGTGTTTGCTACGATAAACACTTATGCAAAACACTTCTGTTGAAAAATATCAAAGAACTGAACTGACAACACAATTACCAGTTCTCCTTTACTAGTCTCTTGATACTAAGTAAGTTTGTATTAGTGACATGGACTCATAGACCCTTACTATAAAATGTGAAGGGAGACCGCCGAGATAAACCAGTAGGCAGTTGGTCCGTAGTTTCAAATAAGGCCCCAAATGCTAAAACACACGGGGGGTTTCAGCTCAAAACATATAAAAAGCAAACAACAGTTGACAAAAAGGTTAGGAAATAGGTCAAAATTTTAGGTGTGGTCTTCAATCAGAGAGGTTAAACCAGTCATCTTCCTGGCACAATTGCTTGAATCCTTGGGTTTGATTTCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAAACTGAGGACTCACAATGTACATAAACAGGAACTTACACAGCAATAGTCCCAGACTTTATTATCATCATATCAGTAAAACATAGTACAAGCTAACAAGTGTTTGCTACGATAAACACTTATGCAAAACACTTCTGTTGAAAAATATCAAAGAACTGAACTGACAACACAATTACCAGTTCTCCTTTACTAGTCTCTTGATACTAAGTAAGTTTGTATTAGTGACATGGACTCATAGACCCTTACTATAAAATGTGAAGGGAGACCGCCGAGATAAACCAGTAGGCAGTTGGTCCGTAGTTTCAAATAAGGCCCCAAATGCTAAAACACACGGGGGGTTTCAGCTCAAAACATATAAAAAGCAAACAACAGTTGACAAAAAGGTTAGGAAATAGGTCAAAATTTTAGGTGTGGTCTTCAATCAGAGAGGTTAAACCAGTCATCTTCCTGGCACAATTGCTTGAATCCTTGGGTTTGATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="41007" stop="42201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41307" g_stop="41600" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41601" i_stop="41675" i_length="75">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41676" g_stop="41901" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41307" e_stop="41600"/>
          <exon e_start="41676" e_stop="41901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATA-GGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTATCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTTCGGTACCAGGATAGAATATGGATCGGGTGCCATGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATAATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG...........................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="41457" stop="42292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41757" g_stop="41992" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41757" e_stop="41992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAATTCCCAAATGAGTATAATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="41746" stop="42550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42046" g_stop="42247" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42046" e_stop="42247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTTAGCTTTTTAGAATACTCTTAG-TTTAGTAATTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</genome_strand>
        <mrna_strand>TCATTACATCGGAT-TTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTA-TTTTAGCTTCTTAG-ATACTCTTAGATTTAGTAATTTGA-AGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="55504" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55204" g_stop="54996" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="210" polyA_stop="219"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55204" e_stop="54996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCTGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAAATGTTGTTGAGTTTTAAAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="55793" stop="54958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55493" g_stop="55258" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55493" e_stop="55258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCTGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTGTATGTTT-TCTTTTTGATTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="56397" stop="55049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56097" g_stop="55882" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55881" i_stop="55654" i_length="228">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55653" g_stop="55349" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="515" r_length="305" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56097" e_stop="55882"/>
          <exon e_start="55653" e_stop="55349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTAGTATAAAAGAAGGCTTGATGAACACAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCAGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGTCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCTGGTACTAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATA-TGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCATTCTAATTAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAG....................................................................................................................................................................................................................................GATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239788" ref_strand="+" ref_description="SGN-E239788 [cLED-29-M7]">
      <seq>tagctctgctcaatagaattggcaccatggagttgttacaccctagcaacctctttcccatttttgtgccatctttaatactagtattattttggtgcaaaatcatgaggcgtcaaagagttttcctagtagattttgcatgttacagacccccaaaagatcaacaaatttgtagacaaacctttattgaaaaatcttctagaagtttaaattctaacaaaaacacattagagttcatggacaggatcttgcaacgagtaggtttaggtgagaaaacgtacctttctaaaggtttgttaaaagaacctccagatatgagcgcgaaagcggctaaggaagaagtggagatggcaatattcggatccatagatgagcttttactgaaaactggagtacaatgtgaagatattgacatattggttactgtttgtggcgtatacaatattatgccatctttgtctagtgtcatagtgaagcgttacaaccttagacatggatatacatacatataatattactggaatgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="63421" stop="62293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63121" g_stop="62593" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E239788" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63121" e_stop="62593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTGCTCAATAGAATTGGCACCATGGAGTTGTTACACCCTAGCAACCTCTTTCCCATTTTTGTGCCATCTTTAATACTAGTATTATTTTGGTGCAAAATCATGAGGCGTCAAAGAGTTTTCCTAGTAGATTTTGCATGTTACAGACCCCCAAAAGATCAACAAATTTGTAGACAAACCTTTATTGAAAAATCTTCTAGAAGTTTAAATTCTAACAAAAACACATTAGAGTTCATGGACAGGATCTTGCAACGAGTAGGTTTAGGTGAGAAAACGTACCTTTCTAAAGGTTTGTTAAAAGAACCTCCAGATATGAGCGCGAAAGCGGCTAAGGAAGAAGTGGAGATGGCAATATTCGGATCCATAGATGAGCTTTTACTGAAAACTGGAGTACAATGTGAAGATATTGACATATTGGTTACTGTTTGTGGCGTATACAATATTATGCCATCTTTGTCTAGTGTCATAGTGAAGCGTTACAACCTTAGACAT-GATATACATACATATAATATTACTGGAATGGGATG</genome_strand>
        <mrna_strand>TAGCTCTGCTCAATAGAATTGGCACCATGGAGTTGTTACACCCTAGCAACCTCTTTCCCATTTTTGTGCCATCTTTAATACTAGTATTATTTTGGTGCAAAATCATGAGGCGTCAAAGAGTTTTCCTAGTAGATTTTGCATGTTACAGACCCCCAAAAGATCAACAAATTTGTAGACAAACCTTTATTGAAAAATCTTCTAGAAGTTTAAATTCTAACAAAAACACATTAGAGTTCATGGACAGGATCTTGCAACGAGTAGGTTTAGGTGAGAAAACGTACCTTTCTAAAGGTTTGTTAAAAGAACCTCCAGATATGAGCGCGAAAGCGGCTAAGGAAGAAGTGGAGATGGCAATATTCGGATCCATAGATGAGCTTTTACTGAAAACTGGAGTACAATGTGAAGATATTGACATATTGGTTACTGTTTGTGGCGTATACAATATTATGCCATCTTTGTCTAGTGTCATAGTGAAGCGTTACAACCTTAGACATGGATATACATACATATAATATTACTGGAATGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274145" ref_strand="+" ref_description="SGN-E274145 [cLEN-8-G16]">
      <seq>taaaactctacaatgagaggatggctaagttggttttgccaatgcctggggagtctttgcaaaaggctcatgtagagaacagacaggcagcgatgaatgtctttgatgaacagcattttggtcgtcatcatgcaaaaaaatcagttgataaattggatgaagagatcgaaaaggtgtacaagaatataatgctggcgaatgaatatcaatcctcaaagctgtgtgaggctttgtatactagatgtgaggacaaaatggacaatcttcaggtcctcagacttccttcgatggcaaagttcaatgctggcttcatccagtgtaaccaaagctttcatggtgaatgtgtcggaccttctaaaatcaactatgagaagcggatgatgaagatgttagagaagtcaaagtcttcattcatcaaggactataatcacagactctttaattggttggtggctttctcactgttcatggtggtggtcgggcggttcgtcataaagtttattttggtcgagattggcgcatggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="79411" stop="82428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79711" g_stop="79883" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79884" i_stop="79955" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79956" g_stop="80168" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="386" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80169" i_stop="81986" i_length="1818">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81987" g_stop="82128" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="528" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E274145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79711" e_stop="79883"/>
          <exon e_start="79956" e_stop="80168"/>
          <exon e_start="81987" e_stop="82128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCTACAATGAGAGGATGGCTAAGTTGGTTTTGCCAATGCCTGGGGAGTCTTTGCAAAAGGCTCATGTAGAGAACAGACAGGCAGCGATGAATGTCTTTGATGAACAGCATTTTGGTCGTCATCATGCAAAAAAATCAGTTGATAAATTGGATGAAGAGATCGAAAAGGTTTTAATTGATTACAACAAGCATAGTTTTATGTAATTCTCAATTTTTTGCTTATTGCCACATCAATTGCAGGTGTACAAGAATATAATGCTGGCGAATGAATATCAATCCTCAAAGCTGTGTGAGGCTTTGTATACTAGATGTGAGGACAAAATGGACAATCTTCAGGTCCTCAGACTTCCTTCGATGGCAAAGTTCAATGCTGGCTTCATCCAGTGTAACCAAAGCTTTCATGGTGAATGTGTCGGACCTTCTAAAATCAACTATGAGAAGCGGATGATGAAGGTTTAATACATTTAGCTTTTAGTACTTGCTTGTTTTTTATCAACAAGATTTTTCTCAATATACTGAGTGTACACTTCAGCTCTTACGATAATGTTGCATTTGGTTGTGTTGGGGGGAGGTAGAGGAAGAGAAAGAAATAGGATGTGTTTTATCAGGAAGCCCCTACCTTAAATAACGGACAGTATACTATTGAACCCAAAAGGTGAACCATGGAGTGAAACTTTACCATCTGCTGGTGAATATGTAGGTTTGTTGCATCACGCTGGATCAACAGATGAGAAAAAACCCATTCAGGAAGCTAGGCAAATATACATTTTTACTTATAATTGACTATACTAATCTGGATAATGAACAGACAGAAACCATAGTATCTTTGCAGTAAATGAAAATATCCTTTCCACCATCCCTTATCCCTGGAAAGTAGTCAGAAATGTCTAGTGATGTTGTTGCTTTTGAATTCTTGCTTTGATCTTCACTAGTTGCACAGCCACTCTTAAATATGGAAACTATTCGTCACACCAATGTTCTTGTATGAACTCATTAGCCTGCTCCTCCTCTTCCAGTGGGTTTTCTTTCTGGACCAGTTTACATAAGTAGACTGTAGACTGCAGCCCTATTCCAGTTTTAAAAAGACAAAAAATTGCATTAGAAAGAGTCGTGGTCTGAATACTCGTAGGCAGCCTTTGGAATCAATTTAGTATTGGGAGTACTAAACTCACACCCTGCTTTATCTATGAGGCCTGACAAACCTTGATGGAAATTACATACAAGGGTGTGTTAACAGTGAAATCATGTTACTGGAATCTTAACACAAGGCAGTCAATAGCAGACATTTGGCCTTGCAAGTTAATCTGGAAGACCAAATGCCCCCCAAAGGTAGCTTGTTTTTGTTGGTTGGTTAGTAGAAAGGCTTGTTTAACACATGAAGCTTTACAGAAAAGGGGATGGCAATTTTGTTCAACATGTGTCATGTGTGAACAGGAAGCAGAAGTCAATGACCATCTGTTCCTTCATTGTAAAGCAGCATTGAGCCTATGGAACATGTTTTTGGCTCTGTTGGGAGTTAAATGGGTGATGCCTAGCACAACAAAGGAACTACTAAATAGCTGGAAAGGTATTGGGAACAGAGGAAGAAATGAACACTGGTGAGAACTATCCCTGCTTGCATATGGTGGACCCTCTGGAAAGAAAGAAATTTAAGAAGTCTTGAGGGACAAAAGACTAACTTACAGAATATTAGAATGAAATGTACAAGCCTTTTCTTTTTTTTGGTGTAAACAGAATCTTGTAGGGGATAGTAGATTTAGCTGATTTTAAAGGGAACTTGTAAAGTATACCCATGAGTGGTATGTTTGTTTCCGATTCATCATTTTTTGGTGGATGACTTTTTGGTGTGAATACAAAGTTACCATTGTCTCAAAAATTAAGAAACAGGAGTTTAACCTCTCCTGCTTCCTCTCTACTAATTTATGTGCAGAGTAACTCTACGAAACTGATTTGCCAGTTTTATTATTAAGACTATGCTAGCAATAACATAGGAAATTCCTTTACCTGTCCATGTAGAAACAAGAGTCAGATGATAAATTATCCTTTACCTGTCCAATGTATAAACAAGAGTCACAGGATAAATTATCATTTGAATTAAGCAGCATCAGTATCAGTCTTCGTCTCCAGATTTACCTGATTGTCTTGTTTATACATTTTAATAATTTGTTTGAGATGTTTTGCATTACTCCGACTACATTGCTGTTTTTTTTCCTTTCCCGTTGTCCATTTCATATGGCCTACAATGATTGTGTATATCTTCAAATAATGCAGATGTTAGAGAAGTCAAAGTCTTCATTCATCAAGGACTATAATCACAGACTCTTTAATTGGTTGGTGGCTTTCTCACTGTTCATGGTGGTGGTCGGGCGGTTCGTCATAAAGTTTATTTTGGTCGAGATTGGCGCATGGATAC</genome_strand>
        <mrna_strand>TAAAACTCTACAATGAGAGGATGGCTAAGTTGGTTTTGCCAATGCCTGGGGAGTCTTTGCAAAAGGCTCATGTAGAGAACAGACAGGCAGCGATGAATGTCTTTGATGAACAGCATTTTGGTCGTCATCATGCAAAAAAATCAGTTGATAAATTGGATGAAGAGATCGAAAAG........................................................................GTGTACAAGAATATAATGCTGGCGAATGAATATCAATCCTCAAAGCTGTGTGAGGCTTTGTATACTAGATGTGAGGACAAAATGGACAATCTTCAGGTCCTCAGACTTCCTTCGATGGCAAAGTTCAATGCTGGCTTCATCCAGTGTAACCAAAGCTTTCATGGTGAATGTGTCGGACCTTCTAAAATCAACTATGAGAAGCGGATGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAGAGAAGTCAAAGTCTTCATTCATCAAGGACTATAATCACAGACTCTTTAATTGGTTGGTGGCTTTCTCACTGTTCATGGTGGTGGTCGGGCGGTTCGTCATAAAGTTTATTTTGGTCGAGATTGGCGCATGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312292" ref_strand="+" ref_description="SGN-E312292 [cTOA-5-J14]">
      <seq>tttaagcaaagctttaggtgactccctttcctttattgtcttcatggctctcactgctctttagaaagtagcaaaacacacacacaaacaacccaaaacacacacttccatttccattttttgcctatatatatatatatatatgtaacaagtacttgttagagtactaatttgtacaccctcttatcaattccgttgtaaagaacacttttttaactagtatttgttcaattgaatgcttttctgaggaattaaggtggtcgaaaacagctccgatccaagaaagattgaatctttatagtttctgctatggctaacaacccttctgagggaccttctgatgatttctttgaccaaatcttgggatttcctgcttacaatggagcagaacctaatttggcgggaaatgatgccggagctataccgccggcgatgatgctccagcttaactctggtgatgggtcaagtcagtttactggagtgggtcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="85964" stop="87055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86264" g_stop="86755" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E312292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86264" e_stop="86755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGCAAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGG</genome_strand>
        <mrna_strand>TTTAAGCAAAGCTTTAGGTGACTCCCTTTCCTTTATTGTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379640" ref_strand="+" ref_description="SGN-E379640 [TUS-3-F15]">
      <seq>aaagctttaggtgactccctttcctttattttcttcatggctctcactgctctttagaaagtagcaaaacacacacacaaacaacccaaaacacacacttccatttccattttttgcctatatatatatatatatatgtaacaagtacttgttagagtactaatttgtacaccctcttatcaattccgttgtaaagaacacttttttaactagtatttgttcaattgaatgcttttctgaggaattaaggtggtcgaaaacagctccgatccaagaaagattgaatctttatagtttctgctatggctaacaacccttctgagggaccttctgatgatttctttgaccaaatcttgggatttcctgcttacaatggagcagaacctaatttggcgggaaatgatgccggagctataccgccggcgatgatgctccagcttaactctggtgatgggtcaagtcagtttactggagtgggtcttggggttggtttaggtgggtggggggttccatggtcatggtgggggtggttcttttcctttagggttgagtttagaacaagggaaaggtgggttcttgaagatggatgatgtttcagcacctggaaggaggtttagagatgatgttgttgatagcagagcttcttcttctgtcaaacctggttttcatggacaaccgatgccttcaatgccgcatccccctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="85971" stop="88006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86271" g_stop="86929" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86930" i_stop="87661" i_length="732">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87662" g_stop="87706" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="705" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E379640" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86271" e_stop="86929"/>
          <exon e_start="87662" e_stop="87706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGTTGGTTTAGGT-GGTGGGGGGTTCCATGGTCATGGTGGGGGTGGTTCTTTTCCTTTAGGGTTGAGTTTAGAACAAGGGAAAGGTGGGTTCTTGAAGATGGATGATGTTTCAGCACCTGGAAGGAGGTTTAGAGATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCTGTAATTATTGCTTATACCTTTTCTTGGTTATTCAGTTTCTTGATTTCTTGTTGGTTGTCATATAATGACTTATACTGTGATGTTCTGCTTCTTTACTTAGAAAGTTTGCTCCTTTTTCTGTGCAAATTGGTGTAGTGTTACCGAAGAAGTTTTTCACTAAAAAAGTTGTTTGTTTTTTCTGAATTTGTTTCTTTCTAGGATTTGTGTATGTGCTTGGTATATGGGAAGTTGTGTTTTTGCTTTCCCTAAACAGAGAGTCTATTGGAAACAACCTCTCTATCTACCTGGCAAGGTAGGATAAAGTCTGCGTGAACTCGACACTCCTCATACCCCAATGGTTGGACTATACTATGTTCTTGGTGGTGGTGGTGTATGGGAAATTCAATTCTGACTTTCTTTTCCTTTTCTGGACTGGTTGCCTTTACTCCAGTATAATTTGGAGTTAAGAATGAGGTTTTTTAAAAATAAGGCTTATATTTGTGTATTCAAGCTAGAGATCATATAGCCTGTTGATTTTAAGACTACTGTTGCTGGCTTTAGAAAATTGGAATTGCACACTTGCCTAGAAAAAGGGGCTTGACATGTAACATTACTTTTTTCTATTCAAGGTGATGTAAGCAAAACCATGGTCCGAGATCTGAATATGAATAAATCTGGCCATTTATTAAGTGATTTTACCAATTGCTTCCTTGAGATACAATCAAAAGCAATGACAAGGTTCTATCTTTACAGGGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCA</genome_strand>
        <mrna_strand>AAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGTTGGTTTAGGTGGGTGGGGGGTTCCATGGTCATGGTGGGGGTGGTTCTTTTCCTTTAGGGTTGAGTTTAGAACAAGGGAAAGGTGGGTTCTTGAAGATGGATGATGTTTCAGCACCTGGAAGGAGGTTTAGAGATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208976" ref_strand="+" ref_description="SGN-E208976 [cLEC-38-G20]">
      <seq>aaagctttaggtgactccctttcctttattttcttcatggctctcactgctctttagaaagtagcaaaacacacacacaaacaacccaaaacacacacttccatttccattttttgcctatatatatatatatatatgtaacaagtacttgttagagtactaatttgtacaccctcttatcaattccgttgtaaagaacacttttttaactagtatttgttcaattgaatgcttttctgaggaattaaggtggtcgaaaacagctccgatccaagaaagattgaatctttatagtttctgctatggctaacaacccttctgagggaccttctgatgatttctttgaccaaatcttgggatttcctgcttacaatggagcagaacctaatttggcgggaaatgatgccggagctataccgccggcgatgatgctccagcttaactctggtgatgggtcaagtcagtttactggagtgggtcttggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="85971" stop="87057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86271" g_stop="86757" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E208976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86271" e_stop="86757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGT</genome_strand>
        <mrna_strand>AAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379670" ref_strand="+" ref_description="SGN-E379670 [TUS-3-F15](-)">
      <seq>atgatgttgttgatagcagagcttcttcttctgtcaaacctggttttcatggacaaccgatgccttcaatgccgcatccccctgcaatacgtccaagggtgagagctaggcgaggacaagctactgatccacatagcatagcggagaggttacgtagagagaggatagcagaaagaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggaacttttttaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="86589" stop="91038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86889" g_stop="86929" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86930" i_stop="87661" i_length="732">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87662" g_stop="87769" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="149" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87770" i_stop="88218" i_length="449">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88219" g_stop="88284" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="215" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="281" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90364" g_stop="90738" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="734" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E379670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86889" e_stop="86929"/>
          <exon e_start="87662" e_stop="87769"/>
          <exon e_start="88219" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCTGTAATTATTGCTTATACCTTTTCTTGGTTATTCAGTTTCTTGATTTCTTGTTGGTTGTCATATAATGACTTATACTGTGATGTTCTGCTTCTTTACTTAGAAAGTTTGCTCCTTTTTCTGTGCAAATTGGTGTAGTGTTACCGAAGAAGTTTTTCACTAAAAAAGTTGTTTGTTTTTTCTGAATTTGTTTCTTTCTAGGATTTGTGTATGTGCTTGGTATATGGGAAGTTGTGTTTTTGCTTTCCCTAAACAGAGAGTCTATTGGAAACAACCTCTCTATCTACCTGGCAAGGTAGGATAAAGTCTGCGTGAACTCGACACTCCTCATACCCCAATGGTTGGACTATACTATGTTCTTGGTGGTGGTGGTGTATGGGAAATTCAATTCTGACTTTCTTTTCCTTTTCTGGACTGGTTGCCTTTACTCCAGTATAATTTGGAGTTAAGAATGAGGTTTTTTAAAAATAAGGCTTATATTTGTGTATTCAAGCTAGAGATCATATAGCCTGTTGATTTTAAGACTACTGTTGCTGGCTTTAGAAAATTGGAATTGCACACTTGCCTAGAAAAAGGGGCTTGACATGTAACATTACTTTTTTCTATTCAAGGTGATGTAAGCAAAACCATGGTCCGAGATCTGAATATGAATAAATCTGGCCATTTATTAAGTGATTTTACCAATTGCTTCCTTGAGATACAATCAAAAGCAATGACAAGGTTCTATCTTTACAGGGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGGGTATTTTTTTTTTTGCAGCGAAGAGTATTCTAAAGTTATTTAGATTGTCTAACAAGCGGCATATTTTTCTGTTGCTTCTAGCGTTTGGACAGAAGAAAATAATATCCCTTCCTTTATTTGATTGCAACTGTTCAGGGTAAATGAACGAGTTCCTCAGAGTGAAACATTAATCTTTTCACAAGAGGTCATCTAACTAGTTCATATTGTTTCGGGTTATACATAGTTTCTACGAGCATAAGATGTTCTGATAATGCACTGATAAATTACCAAGCCCGATGACCCTAAGCTGCAAATAATGTGTTATTTTAGAATTCAGTTCTGTGTTAGGAAGAATAACATCCTATTTCCGAGCATCAGTTCAAGGTTGAATACTATGTATAAAGGCTTAGGTCCTACTATTCAGTTGCCGCTACTTTACCATTCTAACTGATTTTATTCTTTTCCTGCAGTTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATT</genome_strand>
        <mrna_strand>ATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGAACTTTTTTAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376049" ref_strand="-" ref_description="SGN-E376049 [TUS-40-I2]">
      <seq>ttttcatggacaaccgatgctttcaatgccgcatccccctgcaatacgtccaagggtgagagctaggcgaggacaagctactgatccacatagcatagcggagaggttacgtagagagaggatagcagaaagaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="87364" stop="91028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87664" g_stop="87769" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87770" i_stop="88218" i_length="449">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88219" g_stop="88284" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="172" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="316" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90364" g_stop="90728" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="681" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E376049" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376049" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87664" e_stop="87769"/>
          <exon e_start="88219" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGGGTATTTTTTTTTTTGCAGCGAAGAGTATTCTAAAGTTATTTAGATTGTCTAACAAGCGGCATATTTTTCTGTTGCTTCTAGCGTTTGGACAGAAGAAAATAATATCCCTTCCTTTATTTGATTGCAACTGTTCAGGGTAAATGAACGAGTTCCTCAGAGTGAAACATTAATCTTTTCACAAGAGGTCATCTAACTAGTTCATATTGTTTCGGGTTATACATAGTTTCTACGAGCATAAGATGTTCTGATAATGCACTGATAAATTACCAAGCCCGATGACCCTAAGCTGCAAATAATGTGTTATTTTAGAATTCAGTTCTGTGTTAGGAAGAATAACATCCTATTTCCGAGCATCAGTTCAAGGTTGAATACTATGTATAAAGGCTTAGGTCCTACTATTCAGTTGCCGCTACTTTACCATTCTAACTGATTTTATTCTTTTCCTGCAGTTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTT</genome_strand>
        <mrna_strand>TTTTCATGGACAACCGATGCTTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394097" ref_strand="-" ref_description="SGN-E394097 [TUS-40-J1]">
      <seq>acatagcatagcggagaggttacgtagagagaggatagcagaaagaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="87451" stop="91029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87751" g_stop="87769" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87770" i_stop="88218" i_length="449">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88219" g_stop="88284" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="85" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="229" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90364" g_stop="90729" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="595" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E394097" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394097" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87751" e_stop="87769"/>
          <exon e_start="88219" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCATAGCGGAGAGGGTATTTTTTTTTTTGCAGCGAAGAGTATTCTAAAGTTATTTAGATTGTCTAACAAGCGGCATATTTTTCTGTTGCTTCTAGCGTTTGGACAGAAGAAAATAATATCCCTTCCTTTATTTGATTGCAACTGTTCAGGGTAAATGAACGAGTTCCTCAGAGTGAAACATTAATCTTTTCACAAGAGGTCATCTAACTAGTTCATATTGTTTCGGGTTATACATAGTTTCTACGAGCATAAGATGTTCTGATAATGCACTGATAAATTACCAAGCCCGATGACCCTAAGCTGCAAATAATGTGTTATTTTAGAATTCAGTTCTGTGTTAGGAAGAATAACATCCTATTTCCGAGCATCAGTTCAAGGTTGAATACTATGTATAAAGGCTTAGGTCCTACTATTCAGTTGCCGCTACTTTACCATTCTAACTGATTTTATTCTTTTCCTGCAGTTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTT</genome_strand>
        <mrna_strand>ACATAGCATAGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329743" ref_strand="-" ref_description="SGN-E329743 [cTOD-3-E17]">
      <seq>tagagagaggatagcagaaagaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="87924" stop="91028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88224" g_stop="88284" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="127" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="205" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90364" g_stop="90728" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="570" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E329743" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88224" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTT</genome_strand>
        <mrna_strand>TAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396510" ref_strand="-" ref_description="SGN-E396510 [TUS-27-J2]">
      <seq>aggatagcagaaagaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="87931" stop="91029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88231" g_stop="88284" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="120" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="198" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90364" g_stop="90729" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="564" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E396510" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88231" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTT</genome_strand>
        <mrna_strand>AGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348939" ref_strand="+" ref_description="SGN-E348939 [cTOF-29-G6]">
      <seq>agaattagagcattgcaagagttggttcccagtgtcaataagactgatagagctgtaatgcttgatgaaattgtagattatatcaaattcctacggctgcaagtgaaggtgttgagcatgagtaggttaggaggagctggtgcagtagcaccacttgttacagacattccaatatcatcagtagaggaagagagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctnntttgttgaaaaaacagggttcttttttaaaaatatttatgtataaagtaaaccattttctatcatttatatatttgagtangttttgttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="87943" stop="91098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88243" g_stop="88284" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89436" g_stop="89501" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="108" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90188" g_stop="90265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="186" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90364" g_stop="90802" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="627" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E348939" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88243" e_stop="88284"/>
          <exon e_start="89436" e_stop="89501"/>
          <exon e_start="90188" e_stop="90265"/>
          <exon e_start="90364" e_stop="90802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGGTTAGTTTTCTTTCTTCTATATACTGAACTATGTTTCACTTACTGCGAGCATCATTTTGAAAAGATCAAAAAGAAGAGGATTAAACATTGAGACCCCTTTCTTCTCACAGTTTTCTTTTGTGGGCTTGTGCTTATGTACCCAAAGAACTCAGGAATTTGATGGAGCAATATTTGCAGAATTTATGAAAAAACTAAAATCACTACCTCCTCCAACTTTCTTTGTCTGTTCAAGTTATGATGCTATTTTATTGACAGAGAAGCAATAAGGACTTCATAATGAAGAACTATAAGAGACTTCTTTCAGAAATAGTAGGGTCTCATCACATGGATATGACTTCCCCATGTGTACAGTTTTCAATTTTTGTCCCGTGTTTTTTGGTCTTCCCGGAAGAATGTAAAAAAGTCAAAGTTGATTCATTAGGTAACTTTGTCTTCCCTATTTTTCTTCCATAAAGTTTAGTACAGAGTAGCTGATACGCATGATATTATTAGGATACTGCATGACGTATATTGTGGTCCTTATTTCATGTTTGATAGTCACTATTAGAAGATAGTTGTACATATACTGGGTAAAGAGAATTTATTTCAGTATAGTTCGATACGTTAACTGAAGCAGATCTTCAAATTGGTTTAGTTCACTAGGTCTACTTTTGATAATTGAGGGAGGTTGGATTCACACAGAAGCAAAACCAGAAGATGATAGAAATGATAGTCGTTATGAAAATTATTTCGAGAATTAGTTTTTGCATGCTTAAACAAGGTGTCTTGTGCTTAGAAATTGCCAACAAATGTCACAGAAAAGAAGTTAGATCTTTTATTTTATAAGTAGACCAAAATCTATGAATAGGTAAAAACGTGTCTGCATCATTTTCTCTGATTATTCTATAACTTCCCCATCCCCATCAGAGATTGTGGGACAAAGTAAAACGGGTTTATGTATGTTTTATCTCAAGTGATCTTTAGAAGGTTTTGAGAAATTATACGCTTGTATAGGTTTAATGCAAATGTTCAGCCACCCATTTCTAATTCTTCTGGTGCAATAAATCAACGCATTTACAATGTTTGGCATGTTGTAGTTACTGTGCTTTTATCATTCTGTTACGTTTGTCATATCAGTATTCAACTGTTTCCTTTGTCCGTTGGTGTTGCAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGAGTTGACATACAATCTTTTCAAAAGTTACAATCACGGGTCGCTCTAAATCATTTTGAACCTATCGATGTTGATTTTGGTTGTGAAGGTTCTTTAGAAATGCATTCTGGTACTACTGATAATACTCGGAGCTTCATGTAACTTCTACTTATTAGTTTTTTAAAAAAAAAATGTGTCATGAACGTAATACTTCCAAGGTGCTGAAACTAGCATCTTGACATGATTGGATTTTCTGCATAAAATTCTTTTAAAATGTACTCTCCACGGAATATTCTCACACTTTGCTTTTGCATTGCTCTTTTCAATGACTTTTCATTTCATTCAACAAATGTTCGGATGTCATTTTCTGCGCAGCATATTCCTTAATGGTTAGTTGAATTCGATGTCTATATCAACTGATCAGTAAACAGTCCCCACCCACCCACCCACCCCACGGATATTCGTGTTCAAAGGAAGTTTTGCTGGATGGAAACCGCTCAAATAATTTGAACATGAAAAAGAATTTAATAGTGTAAATGAGAAATGCCATAAAGGATCTCCCACTCACATCATGGAAAAGTTACCTTTCCTCTTTTGAGGGTATAGCACTAGATTTTCTCCTGCTTTTGAATCAATACTTTTTTCCTTGCATTATTGAACCATTTTGGGTACTTTTCTAAGTTAAAAATTATATTTGACACTACAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGTACTTTTTTTTAATTATAATAAGCTTGTTAGACTTCTTTTCTGGAAGATTTGTCCACCTTATTAATTTCTTAATACTTGTGGCTTTGTCTTATTTAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCT-TTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTA-GTTTTGTTCTTCGATACTTG</genome_strand>
        <mrna_strand>AGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG..................................................................................................GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTNNTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTANGTTTTGTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331783" ref_strand="+" ref_description="SGN-E331783 [cTOD-7-M15]">
      <seq>agagcagtgaaggtggaaataattaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttcttttttaaaaatatttatgtataaagtaaaccattttctatcatttatatatttgagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="90068" stop="91084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90368" g_stop="90784" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E331783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90368" e_stop="90784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGT</genome_strand>
        <mrna_strand>AGAGCAGTGAAGGTGGAAATAATTACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331778" ref_strand="+" ref_description="SGN-E331778 [cTOD-7-K15]">
      <seq>gagcagtgaaggtggaaataataaccaaccagcttgggaaaagtggtcaagtgatggcacagaaaggcaagtggctaaactcatggaagaaaatgttggtgctgcaatgcaatttcttcagtctaaagcactatgtataatgcctatttctcttgcatcagcaatttatcactctcagccaccagatacatcaagtcttgttaagccagaaacaaatcctccttcatagatgaacacccttatagaaaaaggtgacataacatgctaatgaccttaaagaattttcttgcagtggatggttcctacttttatctattcaagtaatatttagctttttgttgaaaaaacagggttcttttttaaaaatatttatgtataaagtaaaccattttctatcatttatatatttgagtagttttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="90069" stop="91092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90369" g_stop="90792" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E331778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90369" e_stop="90792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGTTTTGTTCT</genome_strand>
        <mrna_strand>GAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGTTTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205985" ref_strand="-" ref_description="SGN-E205985 [cLEC-20-K4]">
      <seq>tgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgttttctgtctgtcagtataattacaggtaaaactgattcttgtttgttttatcggtttaactcttaccggatccagtgaaagtcctttgttttgggtcaggatgtaatgttttgcctagaattgatttagtacagaatggttagtttacaattaggaagtttttgatttaagaagccaatagcttttccaatcattacactctaatactcaagtgtactgggagggagaaatggcattgttgtttggcgttttggatgtgaaaagagattttctactgaataaataaacacctggcattcaaagtttcttgtgaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="92493" stop="91461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92193" g_stop="91762" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="451"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E205985" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205985" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92193" e_stop="91762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCATTGTTGTTTGGCGTTTTGGATGTGAAAAGAGATTTTCTACTGAATAAATAAACAACTGGCATTCAAAGTTTCTTGTG</genome_strand>
        <mrna_strand>TGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCATTGTTGTTTGGCGTTTTGGATGTGAAAAGAGATTTTCTACTGAATAAATAAACACCTGGCATTCAAAGTTTCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551588" ref_strand="+" ref_description="SGN-E551588 [cTSB-1-D18]">
      <seq>agcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgttttctgtctgtcagtataattacaggtaaaactgattcttgtttgttttatcggtttaactcttaccggatccagtgaaagtcctttgttttgggtcaggatgtaatgttttgcctagaattgatttagtacagaatggttagtttacaattaggaagtttttgatttaagaagccaatagcttttccaatcattacactctaatactcaagtgtactgggagggagaaatggcattgttgtttggcgttttggatgtgaaaagagattttctactgaataaataaacaactggcattcaaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="98028" stop="91469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97728" g_stop="97705" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="149" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="215" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92291" g_stop="91772" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="735" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="754"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E551588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97728" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="91772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCATTGTTGTTTGGCGTTTTGGATGTGAAAAGAGATTTTCTACTGAATAAATAAACAACTGGCATTCAAA</genome_strand>
        <mrna_strand>AGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCATTGTTGTTTGGCGTTTTGGATGTGAAAAGAGATTTTCTACTGAATAAATAAACAACTGGCATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287954" ref_strand="+" ref_description="SGN-E287954 [cLES-7-M17]">
      <seq>ttatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgttttctgtctgtcagtataattacaggtaaaactgattcttgtttgttttatcggtttaactcttaccggatccagtgaaagtcctttgttttgggtcaggatgtaatgttttgcctagaattgatttagtacagaatggttagtttacaattaggaagtttttgatttaagaagccaatagcttttccaatcattacactctaatactcaagtgtactgggagggagaaatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="92747" stop="91539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92548" g_stop="92545" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="70" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92291" g_stop="91839" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="523" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E287954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92548" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="91839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCA</genome_strand>
        <mrna_strand>TTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373272" ref_strand="+" ref_description="SGN-E373272 [TUS-31-J23](-)">
      <seq>tgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgttttctgtctgtcagtataattacaggtaaaactgattcttgtttgttttatcggtttaactcttaccggatccagtgaaagtcctttgttttgggtcagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="98252" stop="91673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97952" g_stop="97907" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="152" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="199" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="277" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="343" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92291" g_stop="91966" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="669" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E373272" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97952" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="91966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATG</genome_strand>
        <mrna_strand>TGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236145" ref_strand="+" ref_description="SGN-E236145 [cLED-16-B4]">
      <seq>aggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgttttctgtctgtcagtataattacaggtaaaactgattcttgtttgttttatcggtttaactcttaccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="92550" stop="91703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92250" g_stop="92003" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E236145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92250" e_stop="92003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGAT</genome_strand>
        <mrna_strand>AGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217000" ref_strand="+" ref_description="SGN-E217000 [cLEL-1-C23](-)">
      <seq>atgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttccaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggcccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaccaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaagattgtcttctgtctgtcagaataatcccccgtaaaactgattcttgtttgttttatcggtataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="92928" stop="91715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="85" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92291" g_stop="92021" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="422" r_length="271" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="442"/>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E217000" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCG</genome_strand>
        <mrna_strand>GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTCCAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGCCCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAACCAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTCTTCTGTCTGTCAGAATAATCCCCCGTAAAACTGATTCTTGTTTGTTTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311724" ref_strand="+" ref_description="SGN-E311724 [cLEZ-9-E13]">
      <seq>ttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttacctactgcattgatgatatttaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="98271" stop="91778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97971" g_stop="97907" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="171" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="218" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="296" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="362" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92291" g_stop="92078" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="576" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E311724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97971" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGA</genome_strand>
        <mrna_strand>TTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729608" ref_strand="+" ref_description="SGN-E729608 [LA21CC06]">
      <seq>cattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaggaggaaatactacattattaggtgagcctaaggctcctccttgtcgggatctagatgctgctgaataaatttcttgttgttcagttttttaataatgcaaaacaatggatggagagacgcatccgatatcatatgcagtaacttaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100194" stop="91800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99894" g_stop="99781" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="147" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="213" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="330" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="514" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="561" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="639" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="705" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="897" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E729608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99894" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTA</genome_strand>
        <mrna_strand>CATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730322" ref_strand="+" ref_description="SGN-E730322 [LA23DB03]">
      <seq>cttatacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggaccagaaagaggaaatactacattattaggtgagcctagagctcctccttgtcgggatctagatgctgctgaataaatttcttggtgttcagttttttataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100232" stop="91853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99933" g_stop="99781" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="186" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="252" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="369" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="553" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="600" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="678" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="744" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92153" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="882" r_length="138" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E730322" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99933" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAAT</genome_strand>
        <mrna_strand>CTTATACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAAGAGGAAATACTACATTATTAGGTGAGCCTAGAGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGGTGTTCAGTTTTTT-ATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702207" ref_strand="+" ref_description="SGN-E702207 [FA18AD06]">
      <seq>cccccgggctgcaggaatcggcacgaggcgaacaaggaacgtgtgtgtggcacgcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcangaaaggtgaaaaaccaccgcgcggcactcagaatccangtcgtatcaattgtggaccagaaggaggaaatactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100283" stop="91936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99973" g_stop="99781" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="220" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="253" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="319" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="436" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="514" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="620" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="667" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="745" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="811" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92236" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="867" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E702207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99973" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTAC</genome_strand>
        <mrna_strand>GCGAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCANGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCANGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697462" ref_strand="+" ref_description="SGN-E697462 [FA03AB05]">
      <seq>ggaacgtgtgtgtggcacgcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaagtgaaaaaccaccgcgcggcactcagaatccaggtcgtatcaattgtggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100265" stop="91954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99965" g_stop="99781" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="218" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="284" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="401" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="479" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="585" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="632" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="710" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="776" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92254" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="814" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E697462" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99965" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACC</genome_strand>
        <mrna_strand>GGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAAGTGAAAAACCACCG........................................................................................CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731828" ref_strand="+" ref_description="SGN-E731828 [LA28BC01]">
      <seq>gtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactcaaaatccaggtcgtatcaattgtggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100233" stop="91954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99933" g_stop="99781" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="186" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="252" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="369" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="553" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="600" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="678" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="744" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92254" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="782" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E731828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99933" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACC</genome_strand>
        <mrna_strand>GTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTCAAAATCCAGGTCGTATCAATTGTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719639" ref_strand="+" ref_description="SGN-E719639 [FC08BG09]">
      <seq>tcggccgaattggtgtgtgtggcacgcctatcatagatagtgagacttccgatttctccctttcctcccccaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcgcggcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100260" stop="92080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99960" g_stop="99781" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="192" r_length="180" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="225" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="291" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="408" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="486" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="592" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="639" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="717" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="783" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92291" g_stop="92282" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="793" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E719639" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99960" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
          <exon e_start="92291" e_stop="92282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCGGTAAGACGACTATAAGTTGCATAGACTAATTTTATCATGCATAATGACATCAATGCTTTGTTGATTGTCATGCTTTTTTATGTTTCAGCGCGGCACTC</genome_strand>
        <mrna_strand>GTGTGTGTGGCACGCCTATCATAGATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCCAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG........................................................................................CGCGGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287374" ref_strand="+" ref_description="SGN-E287374 [cLES-15-C6]">
      <seq>aaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttgaggcattcaggaaaggtgaaaaaccaccgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="98760" stop="92080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98460" g_stop="98351" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="188" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="294" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="341" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="419" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92445" g_stop="92380" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="485" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E287374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98460" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG</genome_strand>
        <mrna_strand>AAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710736" ref_strand="+" ref_description="SGN-E710736 [FA56CB10]">
      <seq>gcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatctcactccaaagaaagctgtagagattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100247" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99947" g_stop="99781" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="200" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="266" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="383" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="461" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="567" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="614" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="692" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92409" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="729" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E710736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99947" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTG</genome_strand>
        <mrna_strand>GCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212998" ref_strand="+" ref_description="SGN-E212998 [cLEC-72-E24]">
      <seq>atagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgngagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattcccatggatctgaaggatatgcttacnattattatgaggatctcactccaaagaaagctgtagagattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100236" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99936" g_stop="99781" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="189" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="255" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="372" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="556" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="603" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="681" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92409" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="718" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E212998" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99936" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTG</genome_strand>
        <mrna_strand>ATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGNGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCCATGGATCTGAAGGATATGCTTACNATTATTAT...................................................................................................GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214092" ref_strand="+" ref_description="SGN-E214092 [cLEC-80-G20]">
      <seq>caccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctgaaggatatgcttacaattattatgaggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100181" stop="92236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99881" g_stop="99781" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="134" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="200" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="317" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="395" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="501" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="548" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92545" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="626" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92445" g_stop="92438" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="634" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E214092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99881" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92545"/>
          <exon e_start="92445" e_stop="92438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTATGTGAGTTAATACGTAAATCCTGTTTTGATCACTTGTTCAATCTTATAGTAATAAGTTTAAGTATTTGGAGCTTAATTGGTCTTCCCTTCCTTTCTGCAGGAGGATCT</genome_strand>
        <mrna_strand>CACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT...................................................................................................GAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266765" ref_strand="+" ref_description="SGN-E266765 [cLEI-7-C20]">
      <seq>tccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacggtggctgactattccaatggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="99853" stop="92268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99670" g_stop="99653" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="84" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="201" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="279" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="385" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="432" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92622" g_stop="92568" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="487" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E266765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99670" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTG</genome_strand>
        <mrna_strand>TCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373273" ref_strand="+" ref_description="SGN-E373273 [TUS-31-J23]">
      <seq>gaacaaggaacgtgtgtgtggcacgcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgtgagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100271" stop="92293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99971" g_stop="99781" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="485" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="591" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="638" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92622" g_stop="92593" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="668" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E373273" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99971" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="92622" e_stop="92593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAATTGCGACCAAGCCCGCTTTAGTGACATTTTGAAAGAAATCTTGATATTACGAGGATTAAGTGTCCAAAACCCAGTTGTCTAGGAATCTAAGACATTATCAACTGGTCATAATTATGTTCATCTGACACACATTCGATGGGCTCAACGAAAAGGATCTTCAAGTAGCCCTTGTCCAAGTTTTGAATTGATTCCCAGGGATACCCCAGTTATATTAGAAGGAAAGGGTGGTCTACTGGAAACACTAAGATAGATGATGTCGTAATAAGCCAATTTCTACAACATTTCCTCTCTAGTGCTCAAGTTCATGTGCAAAGGCGGAGCCAATATTTCAGTTTTATTGGTTCTGGATTATAGAATGACGATTTCAAGTGCTAATAATTTGGTTGTAAATTTAATATATGTACATTTAATGATTTTTCTTAGCACAAAACCAGTGTTTGAACAGAAGCTATTGTGTTAGGCTGAATTTATATATTGACTTCTGCCTCCGATCCTGTTCATGTGCATGCATGTGTCCTCATTGGTCAAAGCTCAAGTGGTCCCCAAAAGTGTTTTGACATGTTAAAGTTGAACTGAAGTGAGACCCTGTAATGCTCTGATGTTTGTGATGCTAAATGAAGATCTAATATAACTTTTTTTTTCTGATAAGTTCAACTTTTATTAATAAAAGCACCAAGCTGGTACAGGAATTACCACAAGCAACATAAACACCCACCGAACAAACCATCGGGTAACCCCTGCGAACAAACTAATTATGTCCATAAACTGGTCCATATTTCCAATCATGTTATTATTACACCTAAAATATAAATTGAGTAAACAAGAATCTTGTTTCTTGATGTATACATCCTCTCTGCCTCAAAGCAAAGCCTTGGTTCCTTTCCAATCATATAGTCTAGAAGATACAGGTTGGGATCGTTCTCCAAATCTGCCTCTTGTTTCTAGGCATCCATTGACTTTGCCTGGACCCCGTTAAACTCTTGATCTTCAGAGGCATTATTTATGAAACACCAATCAGTCAAAAAAGCTCCTAGCATTCCCTGGAGGATCTGCAGTTCAGGAACAAATGTTCCATTGATTCCAAATCTTCTTCACACAGATAGCATGTACTACTTAGAGCATAACTCCTCTTCTGCAAGTTATTCTGAGTTAAACAAGCCTCCCAGGTGACAATCAAGCCAAAACAAACTGTTCCTAACCTGATTTCTCTGCATCCCTTCGTCCCACATCCATGGTCGTTAGGTTACTTCACTTATGTACTAGGCATATTACCCTTATAAGGGTACGTTGGACTCTTGTCTGGGTTGGCAGGCAGGAATATATCCAGTTACCTGCATAATTTATCAATGCATGATGGAAACTGGCATACTGACAACCTAATTGGCAGCCCACATAAATCTGTTATGAATTAGAACTCCAAACATATATAATAAGACCTCTATATAACAACCGCAAGCTCTCTTTGGAACTCTTTATGTTGCATTTTACCACTCTGTAACAGTAACAACCATAATTACAGCGATACTCTTTGTGAAATTACCCCTCTATAAAAGGCCTTAGTCAAATATCTATGTACTTACTCCTTTGTCCCAATATATTTGATGCAATTTTTGTTTAAGTATGTTCCAAAAAGGAGTGATGATTTATATATTTAGAATCCATTTAACTTTGAACTTTTTAATTTACCCCTAATTAGATGATTTAGTTCATAGGTTTTGAAAGTCGGTCTTTCTTAAACTCCATGCCCAAAGAAAGTGCATCCCATAAAGTAGGATATACGAAGTATTATTTTATAATAATAACAACACAGTCTATTTTTTTTGGGAGACATAACGTAAATAAATTTTGTAAGTTTCAATGAGGAATTTGGAACGTCAAAAGCTCTTGCAAACTTGAAACATGAGATTCAATCAAACCTGGAAGCATTTAATTTTCAGATAGTTTTAGATTATGTGCGTTTTCTAGTCATTTTACGCAGAATTAGTTATGAATTTATTAATATTTTAGTAGTCTCTTAAATTTTTCATTAATGACATATAAATATCTTTTTAAATTTTAATCTAAAATTAATTTTTTCTTATAACATAAAAAATTGAAAAAGTGATGCTTCTTTTGATAATTTGTAAGATTGTTTCTTCAGCATGAAGGGCATGCTGGCCACCTCGAAAAGTTTGTAGCTATTACAAGTCTGCTATCAGGGTCCACCATTTGATCTATATATATTAATTATTATTCACAATTGTTTACCCCAAAAACGTAGAGATACGATGCAATTCCTTTTGACTTCCTGAATGGAACTGGACCTATCTACAGAATATCTACCATGTCTTTCTAACCACACTGACAACCATATCCATGCTGAGACTAATCTCCAAAATCTCTTCTGACTCTTACTTCCATCCCTCCTGATCCAACAACCCAAGAGATCTGAGGTGAGCTCTGGCATGATCCAACTACATCCTGTAATGTTGAGGAATAGGTTTCACAATTGGGTAGTGAAGTTGCTATGTAAGAAGAGGTGCTTGTTTGTCTTCCCTGTAGTGTTAGACAAAAACCATCGAGGAACTAATTGTCTCTCTTTCTTCTTCTGCAAGACTTCTTGAGTTAAACAGGCTCTCTTAATCACTAGCCAAGTGAAACATTTATCTTGGTAGGGATGATACTTTTCCAGAAATAATTCCACTGGTAAGAAGTTCCCCCTCTAGCCAACTGCATACCTCTCTTATATGCACTGCTTACTGAGAAGTTTCGATCTTTTTTGTGCTTCCACAAGACCCTATCTGCATTTGTTGTGGCAATGTCATTTCCTTCTAACTTCTCCAGTACCGAGAACCCAATCATTTAGCATTCTTCTAAAGGAGATGTCTCAATCCTGAACTGACCAACAATCTCTTACTCTACTCTCAGTATCTCTACAGATTTGGAAAATGTTTTAAATATTTCCTGTCTATAACAACCAAATTAGATCCAAAGGCCAATTAATAGGTGTGTAATAGGCAAAAAAAGGTTCAAACAAATGAGGTTGTCATAACTTATAAAGAGGTTTGGCTGTAATAGTGTGCATGGACACATGTACAAGCACAGCCTTATATGGAGGATACACAATTTATCCACCTTTACCGAAAGTAAAGTGACAAAAGGTTTCAGATTCTGGGGCAAATGTATTCTTTTTTTAATCTGCAAACCTATCAACTTGTCGAGGAACTTCATTTTCCTCATAGCCCTTTTGATGGTTTGGTCCTTGTCTAATTGGGGCCTCTAAGGGCTTGAACTCATCGATTGCTGAGGATGCCTCCCTTGGTTGGATGGTTTTTAGATACATGAGAAGAGAAAGATGTGATAGGCAGGGAACTATTCTAAGTCAGAGAACTCATCTTTACTGTTATCAGACAGTTTTCTCAAACCATATTTTCCTATTTATGTTAGTCATAGTGAAATTTGACTAGATATTATGATAACTAAAAATATTCTAGGGCCACCGGGGCACAGTTCGGAACTTTTTGGATAATCTAAATTGGTGCTGAAAAATAACCAACTTGTTAACTTAAATTCTGCTAGGATTTTGTTTGTGGTGGCAGTGTTTGAAAGTCCCTAATCTACGTGCATTGTCGCCAATGCATTGAGGTCTGTTCAGTGCAGTGTTATCAAAGGCGAAAAGTGCAAAAAAGCTCTAAGGTATGTGAGGGCTTTAAGCGCAAAGCGTAAATAAAGCGTGGGCTTTAATGAAAAAAGGCACAAAGGGAGAAAAGAATACAAATATATATGTTTAGTCATAGACTAATAATTATAAACATGGATGACAAAAAATGTCCAAAGAAATTGATGATAAAGTATATCAATTATTTAGTGTCACTTCTTCATATGAGGCTCTGGTAAGGCAAACACCCTTAGAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGTGAAGCGCTCAACACGTTTTGAGTCTTGCTTCAGGGTTTAAGCGCGCCTTTGATAACACTGGTTCAGTGGACCTTGTTTAGACCTAAATTGGGCATCTGTAGGGGGCCACTTACTATTAATTGGGAACTCTGGAGAAGTCGTGAAAATCATAAGGATATATGACGCACCAATGAAAAAGCAGGGTGGGAAAGACAAGATTATGTCTTTGCTTTTATCTTTTGCTGACTCTCAGTTTAAAAGCCTATGTTTTCACTAGCTTCCTAACCAACCTTGTAAAGGCATAAGATATGATTCTGGAGTTGAAACAGTGGAACCTACTGTTAATGACAAGTTACGGTTATTCATCAGAAGAAAATTTTCAATAGAATTATTTTCAATATGCTTAAAAAATAGTAGTGTTGTTTAAACTACTGCAACATTCTTCTTTCCATGCATTGGAAGCTCTTCAGCAAGGAACCATTGATTAGGTCATTAGCTACTCATATTTGTTCAGAATGTTGAACACCATTCAAGTCGTTGCTTATTTGATAGATAAGTGCTTTAATATCACACCTCATTTTGGTGACAGGGTTGCTGTGTAAATGCTCCAATGATGACG</genome_strand>
        <mrna_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGTGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267396" ref_strand="+" ref_description="SGN-E267396 [cLEI-8-K5]">
      <seq>tccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaactaaggatggcttattttctgttggtgagatggaatgcatgggttgctgtgtaaatgctccaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="99853" stop="92297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99670" g_stop="99653" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="84" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="201" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="279" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="385" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97551" g_stop="97505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="432" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97504" i_stop="97146" i_length="359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97145" g_stop="97120" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="458" r_length="26" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E267396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99670" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97505"/>
          <exon e_start="97145" e_stop="97120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATGGTGAGTCATTTTTCATACATCTATTGATATTGACCTTGATTCTATTTGGTGGCCTTGAAAGCATGTCCTACATGACCGCTTTTGTGAACTATTTGTCTCATTTACTTTCCAAACCTAAGATCTGATGTTGAGATTGGTGCTTGTTATGCTCAACTGTTATGCAATAAATCACATGACCATGATTGTGCGTTGTGACTGATAGTAACTAACTTAAGGAGTAGAAATTGGCTAATCTTTAGTGTTGGATGGCTGGAACTTTGGTTGATTGTATCTTGTAAGGAAAATCTACTAAGACACTAGAGATATTCTCAGTTTGTGGCCTTGGTTATAGGTGTTCTGATGATTAATGTATCTTGTAGATTCGTTATGCATATGCACTCTTAAT</genome_strand>
        <mrna_strand>TCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG.......................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGTGTAAATGCTCCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305485" ref_strand="+" ref_description="SGN-E305485 [cLEX-15-D4]">
      <seq>cagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacctgggagtaaagcgcaatgaagtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100246" stop="97405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99946" g_stop="99781" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="199" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="265" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="382" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="460" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="566" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97551" g_stop="97544" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="574" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E305485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99946" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97705"/>
          <exon e_start="97551" e_stop="97544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATGGTCAGTGTTTTATGGAGGTCTTTCCAATTATTTTATTAGCCTTTTTAATAGTCCTAATAATCCTTCTTGATGAAAGAATAAATAAAATAGCCTTAATAATCCTATCGTTGAAACATGTTCTTATTCTGGTTCATGACTTATTCATGTATGCAGAAGTAACT</genome_strand>
        <mrna_strand>CAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG.........................................................................................................................................................AAGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245156" ref_strand="+" ref_description="SGN-E245156 [cLEF-13-C18]">
      <seq>cggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaggtatcgaagaagctatactgaagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100158" stop="97423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99858" g_stop="99781" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="111" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="177" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="294" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="372" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97723" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="460" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E245156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99858" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACC</genome_strand>
        <mrna_strand>CGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348229" ref_strand="+" ref_description="SGN-E348229 [cTOF-27-O13]">
      <seq>tgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttcaagaagtatcgaagaagctatactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100232" stop="97427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99932" g_stop="99781" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="185" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="251" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="368" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="446" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97727" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="530" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E348229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99932" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAG</genome_strand>
        <mrna_strand>TGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAAGTATCGAAGAAGCTATACTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292185" ref_strand="+" ref_description="SGN-E292185 [cLET-1-B17]">
      <seq>gaacaaggaacgtgtgtgtggcacgcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgatccgtggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100271" stop="97455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99971" g_stop="99781" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="485" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97755" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="541" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E292185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99971" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTC</genome_strand>
        <mrna_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330227" ref_strand="+" ref_description="SGN-E330227 [cTOD-4-C24]">
      <seq>gaacaaggaacgtgtgtgtggcacgcagaacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100271" stop="97464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99971" g_stop="99781" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="485" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97764" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="532" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E330227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99971" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGAT</genome_strand>
        <mrna_strand>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248770" ref_strand="+" ref_description="SGN-E248770 [cLEG-5-M22]">
      <seq>aacattcatagtgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcaccttttggtttgtggcacaacaccttgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100243" stop="97464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99943" g_stop="99781" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="196" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="262" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="457" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97764" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E248770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99943" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGAT</genome_strand>
        <mrna_strand>AACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282762" ref_strand="+" ref_description="SGN-E282762 [cLER-15-A17]">
      <seq>tgagacttccgatttctccctttcctccccaaaatctccattttctccgaccaccgtctgctcggagcaatcgccggagactaaaaatgttcggtcgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcatcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgcagtgattcctttgttggatcttgcacagcagcaaatggagggtggctacctgtttcggcgatgaatgcagtggctaaggttgttgaagttgcgccaattcgtgtatatgaggttgcaactttctacacgatgttcaacaggacaaaagttggaaaatatcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100232" stop="97591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99932" g_stop="99781" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="185" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="251" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98351" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="367" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97984" g_stop="97907" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="445" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96">
            <donor d_prob="0.014" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97810" g_stop="97791" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="465" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E282762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99932" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98351"/>
          <exon e_start="97984" e_stop="97907"/>
          <exon e_start="97810" e_stop="97791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCAGTATGTTGACACTGTTCAGATTGATTCTTACTATTTGCATTATTATAAAGTTTGTCCTGGTGATCAGCATTATTAACGGTTACCACTTGAATTTTGAAATTATTTGGTGATCTTCTTTACAATTAATCAGCATTTGGTTGCTAGAACCAATTCAGCTTTAGTTCTTGCCATAATTATATTTGTGTTATTTGGCATGTGTACTAACTTGATTTTTGTATTACCATTACCCCTGTTTCCTTTGTATACCCTCAAAGTAAGCACACTGCAAGTTGCCGTTCCTTATTAGGGGTTATTTGTTATATGATTTTTCTGCCTATGTCAAATTGGCATTCAAAAGCACCTAACCTAGTCTTCTAAATGCTTAAGGTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAAGTGAGTAGTTTGTCTTGACCTTTGGCTTGTGCAAGTGCAGGAAATTTAGAACCCATCTTTACTTAACATAGCTTACTCAGTTTCTTGTCCCTTTAGGTTGGAAAATATCACCTTTT</genome_strand>
        <mrna_strand>TGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCATCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGC-AAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA..............................................................................................................................................................................................................................................................................................................................................................................GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA................................................................................................GTTGGAAAATATCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202033" ref_strand="+" ref_description="SGN-E202033 [cLEC-7-L5]">
      <seq>tttctacctttcctcctttaaaaactccattttctccgaccaccggctgctcggagcaatcggcggagactaaaaatgttcggacgactcgctgcgcaacgtctgaacgagatccgaacgtccatccgccgaactactcaggcgtcgcgatctttttccactgcactcaactatcacattgatacaccggacaacaaaacggaccttccttgggagtttaataatgcaaacaaggaaaaggtgaaagaaatactgtctttctacccatccaactataaacaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="100202" stop="98121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99920" g_stop="99781" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99685" g_stop="99653" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="174" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101">
            <donor d_prob="0.213" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99551" g_stop="99486" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="240" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98421" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="287" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E202033" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99920" e_stop="99781"/>
          <exon e_start="99685" e_stop="99653"/>
          <exon e_start="99551" e_stop="99486"/>
          <exon e_start="98467" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCTTTCCTCC-CCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAGGTCTAATCCTCGTTTATGTGTTTTCCATTTCACTTTGATAGATTGGTTCTTCCTTCCTTTTAGTCTAAATCAATTATATTTTTTCTGTTTTACAGGCATCGCGATCTTTTTCCACTGCACTCAACTATGTGAGTTGTTATCTAATTGTAATTTCGGAGTTTAGATTCGAAATTTGAGTATTCGATTGCGTGTTTATGTTTTTATTTGTTTGGATTTTTATTATACGCAGCACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAGGTTAGCAATGCTTATTATCCTCCAGAATACTTAAGAGCTAATTCTTTGTCATATCACTTGCAACATTTTTTTAGAATTTACATCAAAAGTTTGAATTTTTGCTATTGCTATTCTGTTTTTCTTTCAATTTATGTGTGGAAATTGAGAGCTCTTGTTACCAGGATTTATGACATCTCCTTTACTGAATGTTTCAAACTTTTCTGAATCAGAATATAATTTCTTTGTATGTTTTGATGAAAATGTATTCTGCTCTAATCTATATCTGTACTATTATCTGTGTAAGCTATTTAGGTGCCTATCTAGGCTTTGAATATCTGAACTTGGTTGAAAAATTGCATAAAAATTATCTTGGCTGACTCAAGTTTTGAGCTTGTCTGCGAAATGAATAACAGCCTTTGAAATGATCTACCTTACACCATAAATTCAAGCTACATCTGTATGAGAAGATTGTCTAAATGAGCATTCAAACTTAGTTTCTCATTTGAAAATGAATGGGAGAAAAGTTATTTTCTTAAAAGAACCTAATGATCAAGTCGCTTCTCTGCATATCCAACCTAAAGAGAAGATTGGAGAAGGAATAAAATGTGGAGAGACAATCACAAATAAAAGGAAAATACTTTCAAAGATAGTAGGGTGATTAATGTTGTGGTTCAAGGCCAAATACATTCCCTGTTTGTTGCTTGGGCCTATTTTCATCATGTTATTCAGTAGCGCTTCTGATGCATTGACTCCAAAATTGTAAAAGTTAGAAACATCTTCTTCTATAGCATTCTTCAGCAGAGGTCATAACTTAATTTTTAGAATTTACTAATCAAAGAAAAGTATAATACGAAGCTTCCTGCATCATAGAGATTTTTGAAATGGATTTTGAATGTTGATTAGCTTCAATAATCCAATTTCAGAGGATTACCATAGTAGTGTACTTACACTGAATCCATGCATCTCTTTAATTGGTAGTTCTTCCGTTAACAATTTTATCGTCTATCTTTCCTACTTAATCCTCTGATGCAATGTGCAGGTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGC</genome_strand>
        <mrna_strand>TTTCTACCTTTCCTCCTTTAAAAACTCCATTTTCTCCGACCACCGGCTGCTCGGAGCAATCGGCGGAGACTAAAAATGTTCGGACGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG...............................................................................................GCGTCGCGATCTTTTTCCACTGCACTCAACTAT.....................................................................................................CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699547" ref_strand="+" ref_description="SGN-E699547 [FA10BH05]">
      <seq>tgcactaaccctttcttctcttcaactccaagaacccctgcaaaatctctctcttttcgatttttctcccaatccaagcaagtacaaaccgccaaattagcttcgggttgtcgtataagatgttcctttgagtacaatagttctggaaatggaaacggtagtgtgtatgagtatgaaagatatgctggggtttctcagtacccacggccttccgaagtacagtggaagaaggagctttgtaattcagtgcagcttattggtaatgttgcagtgccggttcaaattaagcatcttaattccggaaaagttgtagcttggactcgtcttgctgtaaggaagtcgcaaaacgacactacttggattaatttgacattctgggatgacttggctaatgttgccaatcaacatgtggagaaaggacagcagatatatgtgtctggtcgcctaatatcagatacagttgaaggtgatgatggaaaagaacagacttattataaggtggtcgttcagcaattgaattttattgagaagagctctcctcctattgcctcatataacggggactctaattccatggcaccacgtaaaaagcaaaataattttgctgcaaataccactggatccacggaggagctatggcaagctttctttgctaatccactagaatggtgggataataggaagaacaagaggagtcccaactatccagacttcaagcacaaagataccggtgaagcattgtgggtagaaagcagatacaatccaacatgggtgaaatctcaacttgcagtactggattcaaagatggagtcttttcatgatcaaaatggcagcaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="102625" stop="106716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102923" g_stop="103281" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103282" i_stop="105368" i_length="2087">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105369" g_stop="105507" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="498" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105508" i_stop="105599" i_length="92">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105600" g_stop="105684" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="583" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105685" i_stop="105786" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105787" g_stop="105893" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="690" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105894" i_stop="106265" i_length="372">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106266" g_stop="106416" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="841" r_length="151" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E699547" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102923" e_stop="103281"/>
          <exon e_start="105369" e_stop="105507"/>
          <exon e_start="105600" e_stop="105684"/>
          <exon e_start="105787" e_stop="105893"/>
          <exon e_start="106266" e_stop="106416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTAACCCTTTCTTCTCTTCAACTCCAAGAACCCCTGCAAAATCTCTCTCTTTTCGATTTTTCTCCCAATCCAAGCAAGTACAAACCGCCAAATTAGCTTCGGGTTGTCGTATAAGATGTTCCTTTGAGTACAATAGTTCTGGAAATGGAAACGGTAGTGTGTATGAGTATGAAAGATATGCTGGGGTTTCTCAGTACCCACGGCCTTCCGAAGTACAGTGGAAGAAGGAGCTTTGTAATTCAGTGCAGCTTATTGGTAATGTTGCAGTGCCGGTTCAAATTAAGCATCTTAATTCCGGAAAAGTTGTAGCTTGGACTCGTCTTGCTGTAAGGAAGTCGCAAAACGACACTACTTGGTAATTTAAAACGACACCCAGTTGATTTGTTTTGGTTGCTTGACACTTTTTTATGTTTATCCTTTTCAAAATTTTGAATGCAGCTCCAATTTGAACACTTGTAGCCATTGTTTGGTTGCTGGTTAGACTCATTAGAGTTATGTAGATATTAACAATGCAGAATTTCGTTATTCCATCTTCTACCCTGCATAAATAATACATTAATTCCCTTGTATGTAAGTATTAGTTATGCGAGATTGTAATCTGGTAGGCTGGTAGGGGAATACCAAACTTGGTGTGTGAAGTTTTATGCAGAGCAACTAAAATGCTACCAAATATGGTACTAGTTATGCTGGTTTTAATACATGAATAGTTTACATTTTTAACCAGCAACCAAATGACACCTAAGGAGGACCTTTTGTTGTTGCAATTACTAGACTGCAACTCTAATTTGAACACGGGGTTGTTTGGTTGCGGGTTGGAGTTATGTTGGTTAGTAATGCAGAGGTAAGTTATGCAAGAATTTATTATTCATGTATTAGTTATCCATCTTCTATACATAGATTCCTCGTAAGTATTAAGCAAGAGTGCAAACTGGTAACCAAACACCGTATTTGGTGTGTTGAGTTTTATACATATCTTGTTTTTTTTGTTTTTTTTTTGTAAATTGGTAAATGTTGAAAGTTTTGTACAATCAACTAAAATACTACCGAACATGGTACTAGTTATACTGATATTAATACATGAGTAACTTACATTTCTAACTAGCAACAAAACAACCCCTAAGTAGACTATTTTCATTCACCTATACAAGTAGTAATAATGTGAGCGTGTTAGTTTAGAGGCAAACATTTGTGCTACTGTGAAAACTTTAAGCCTTCATCCAATAACAAACCGAACAAAGTGATCCAACTATAATTCATATAATAGGCACTCTATCATGACTGCTTTAGTTTGGTGTAATTTTTACTGCGATAAATGATAATTGATAATTGTATATCATGGCATTATTCCAATGATCTGTTGTTACACTTAAGGGGTTAAAGAGATTACCTTGAAGCCATCATAGCTAGAAAATTTAATCTACTGAAACTTTATGATGTGGAAATCAAATGAAAGATGCAGTAAATCTACTATTACGCCATGGCATCCTCAATTGATGGACGTAAAACTGATAAAGACTATTGGCAATACGCATACATCAAGTATCTTAACATAACAAGTAGTGAAAGTAGATGCATAATTTATGTTTTCAACTGAAACAAATTTGCCTTTTTCTTTTACCTAATTCAAGATTCAATGTGGCAAAAACTAATGACTTGCAAACTGCTTCCATAAATCCATCGACTCATGAAAGCTATCTCTGCTGTTGTAATCCTTGTATCCTAATGTCCACTGGTCTACTTTTTTCCCTCTTCCACAACTGGACAGTGTCTGAATTTTCCATACCACAAACCCAGAAAGTCAGTTTTCATGAGTTTCCTGATACCAATTTTTAGCTTGACTAAAGAACTAGAAAAATCCCTAAAACTGAAATTTGCTCGGGCACATGAGTTGAGTGTACTTGCGTTAACTAGTTGTCGAGCAAGATCTAATTTTGAAGTTTCCATATGCAATTCCTTTTGTGTTCTTAGAAATGCCTCCGCACTTCTGATTTTGAAACCAACAAACCTTTTGTTCTCCTAGTGGATGGTTTTAACATTTCCCAAGTTACATTCTTTTAGGACCAAAATATCTGAAAGCTGCCATTTGGTTTGGCATTACTCCTTGCCTCAAGCTTTCATTCTTTTGGTTAGGACTTTGACTAAATTCTATTTCTTTTATAGTGTAGTTTACTAGTGTGTTTGTCCTCCGTTTCTATGTTTCCTTCGATAGCCCAGATCATGTTCTTTTTTTGATAATAAATTTGAGTTCATTATTTCTACAAAGTTTTGTATCATGTTCTCGCATTCCTACTGTTGCTTCCTTAATGAATAAAAGAGAGGTTAAGTAATAATGAAGCTTACTCTGCCTGAAATAGCAATCCTCCTTTCCTATCTCTTTTTTATTCTTCTTAATGACCAATAGCAGAAAATTCAGTTCTTCGGTTTCTATTTTTGTGGTTTCAGGATTAATTTGACATTCTGGGATGACTTGGCTAATGTTGCCAATCAACATGTGGAGAAAGGACAGCAGATATATGTGTCTGGTCGCCTAATATCAGATACAGTTGAAGGTGATGATGGAAAAGAACAGACTTATTATAAGGTTGCTTTACTTGTAATTTTCTTTGGGTGTTGTATGGACATCATGTTTGTCCTATATCTGTATGACTGAACTTTTGCGTTCTTTTTTGGCAGGTGGTCGTTCAGCAATTGAATTTTATTGAGAAGAGCTCTCCTCCTATTGCCTCATATAACGGGGACTCTAATTCCATGGCACCACGTAAGTAATACTTCTTTACCTAAAATCTTTCTTTACTGCTAGAGCTGGATGCACATCTTTCTGGCATCAAATTTTGAGAGGTTTCCACTTGTGGCTTTGCAGGTAAAAAGCAAAATAATTTTGCTGCAAATACCACTGGATCCACGGAGGAGCTATGGCAAGCTTTCTTTGCTAATCCACTAGAATGGTGGGATAATAGGAAGAACAAGGTACACCCAGTAAAGCATTTCTTAAAATTACATAAACAAGAAGTTGACGATTGCCATAGCATCACTAGTTGCACTTTTATACTTGTCTTTACTGGTGCATATGTAATGCACATGACATGCTTGCTGCAGAATTCCTTTTTTGGGTAAAATTTAGTGCCAACCAACACTAGAGATAAAGAAAGTGCAGTTTGCTTTGGGAGCAAGGAAGACAAACTAAAAGCAAAAGATAGTCTGAATTATGAACCTATCAAAGCGAAATACTGAACAATACTGAGTTTGGGTGCTTAAAGATTGATTAGACACTTCACAATATTATTTCATTTTGCTAGTCCCTCACAAAATAAATACTCAGTGACATTATTCCTTTGACAGAGGAGTCCAAACTATCCAGACTTCAAGCACAAAGATACCGGTGAAGCATTGTGGGTAGAAGGCAGATACAATCCAACATGGGTGAAATCTCAACTTGCAGTACTGGATTCAAAGATGGAGTCTTTTCATGATCAAAATGGCAGCAGAAATG</genome_strand>
        <mrna_strand>TGCACTAACCCTTTCTTCTCTTCAACTCCAAGAACCCCTGCAAAATCTCTCTCTTTTCGATTTTTCTCCCAATCCAAGCAAGTACAAACCGCCAAATTAGCTTCGGGTTGTCGTATAAGATGTTCCTTTGAGTACAATAGTTCTGGAAATGGAAACGGTAGTGTGTATGAGTATGAAAGATATGCTGGGGTTTCTCAGTACCCACGGCCTTCCGAAGTACAGTGGAAGAAGGAGCTTTGTAATTCAGTGCAGCTTATTGGTAATGTTGCAGTGCCGGTTCAAATTAAGCATCTTAATTCCGGAAAAGTTGTAGCTTGGACTCGTCTTGCTGTAAGGAAGTCGCAAAACGACACTACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAATTTGACATTCTGGGATGACTTGGCTAATGTTGCCAATCAACATGTGGAGAAAGGACAGCAGATATATGTGTCTGGTCGCCTAATATCAGATACAGTTGAAGGTGATGATGGAAAAGAACAGACTTATTATAAG............................................................................................GTGGTCGTTCAGCAATTGAATTTTATTGAGAAGAGCTCTCCTCCTATTGCCTCATATAACGGGGACTCTAATTCCATGGCACCAC......................................................................................................GTAAAAAGCAAAATAATTTTGCTGCAAATACCACTGGATCCACGGAGGAGCTATGGCAAGCTTTCTTTGCTAATCCACTAGAATGGTGGGATAATAGGAAGAACAAG....................................................................................................................................................................................................................................................................................................................................................................................AGGAGTCCCAACTATCCAGACTTCAAGCACAAAGATACCGGTGAAGCATTGTGGGTAGAAAGCAGATACAATCCAACATGGGTGAAATCTCAACTTGCAGTACTGGATTCAAAGATGGAGTCTTTTCATGATCAAAATGGCAGCAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318471" ref_strand="+" ref_description="SGN-E318471 [cTOB-10-L2]">
      <seq>tgtgtatgagtatgaaagatatgctggggtttctcagtacccacggccttccgaagtacagtggaagaaggagctttgtaattcagtgcagcttattggtaatgttgcagtgccggttcaaattaagcatcttaattccggaaaagttgtagcttggactcgtcttgctgtaaggaagtcgcaaaacgacactacttggattaatttgacattctgggatgacttggctaatgttgccaatcaacatgtggagaaaggacagcagatatatgtgtctggtcgcctaatatcagatacagttgaaggtgatgatggaaaagaacagacttattataaggtggtcgttcagcaattgaattttattgagaagagctctcctcctattgcctcatataacggggactctaattccatggcaccacgtaaaaagcaaaataattttgctgcaaataccactggatccacggaggagctatggcaagctttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="+" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="102784" stop="106155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103084" g_stop="103281" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103282" i_stop="105368" i_length="2087">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105369" g_stop="105507" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105508" i_stop="105599" i_length="92">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105600" g_stop="105684" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="422" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105685" i_stop="105786" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105787" g_stop="105855" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="491" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="+" ref_id="SGN-E318471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103084" e_stop="103281"/>
          <exon e_start="105369" e_stop="105507"/>
          <exon e_start="105600" e_stop="105684"/>
          <exon e_start="105787" e_stop="105855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATGAGTATGAAAGATATGCTGGGGTTTCTCAGTACCCACGGCCTTCCGAAGTACAGTGGAAGAAGGAGCTTTGTAATTCAGTGCAGCTTATTGGTAATGTTGCAGTGCCGGTTCAAATTAAGCATCTTAATTCCGGAAAAGTTGTAGCTTGGACTCGTCTTGCTGTAAGGAAGTCGCAAAACGACACTACTTGGTAATTTAAAACGACACCCAGTTGATTTGTTTTGGTTGCTTGACACTTTTTTATGTTTATCCTTTTCAAAATTTTGAATGCAGCTCCAATTTGAACACTTGTAGCCATTGTTTGGTTGCTGGTTAGACTCATTAGAGTTATGTAGATATTAACAATGCAGAATTTCGTTATTCCATCTTCTACCCTGCATAAATAATACATTAATTCCCTTGTATGTAAGTATTAGTTATGCGAGATTGTAATCTGGTAGGCTGGTAGGGGAATACCAAACTTGGTGTGTGAAGTTTTATGCAGAGCAACTAAAATGCTACCAAATATGGTACTAGTTATGCTGGTTTTAATACATGAATAGTTTACATTTTTAACCAGCAACCAAATGACACCTAAGGAGGACCTTTTGTTGTTGCAATTACTAGACTGCAACTCTAATTTGAACACGGGGTTGTTTGGTTGCGGGTTGGAGTTATGTTGGTTAGTAATGCAGAGGTAAGTTATGCAAGAATTTATTATTCATGTATTAGTTATCCATCTTCTATACATAGATTCCTCGTAAGTATTAAGCAAGAGTGCAAACTGGTAACCAAACACCGTATTTGGTGTGTTGAGTTTTATACATATCTTGTTTTTTTTGTTTTTTTTTTGTAAATTGGTAAATGTTGAAAGTTTTGTACAATCAACTAAAATACTACCGAACATGGTACTAGTTATACTGATATTAATACATGAGTAACTTACATTTCTAACTAGCAACAAAACAACCCCTAAGTAGACTATTTTCATTCACCTATACAAGTAGTAATAATGTGAGCGTGTTAGTTTAGAGGCAAACATTTGTGCTACTGTGAAAACTTTAAGCCTTCATCCAATAACAAACCGAACAAAGTGATCCAACTATAATTCATATAATAGGCACTCTATCATGACTGCTTTAGTTTGGTGTAATTTTTACTGCGATAAATGATAATTGATAATTGTATATCATGGCATTATTCCAATGATCTGTTGTTACACTTAAGGGGTTAAAGAGATTACCTTGAAGCCATCATAGCTAGAAAATTTAATCTACTGAAACTTTATGATGTGGAAATCAAATGAAAGATGCAGTAAATCTACTATTACGCCATGGCATCCTCAATTGATGGACGTAAAACTGATAAAGACTATTGGCAATACGCATACATCAAGTATCTTAACATAACAAGTAGTGAAAGTAGATGCATAATTTATGTTTTCAACTGAAACAAATTTGCCTTTTTCTTTTACCTAATTCAAGATTCAATGTGGCAAAAACTAATGACTTGCAAACTGCTTCCATAAATCCATCGACTCATGAAAGCTATCTCTGCTGTTGTAATCCTTGTATCCTAATGTCCACTGGTCTACTTTTTTCCCTCTTCCACAACTGGACAGTGTCTGAATTTTCCATACCACAAACCCAGAAAGTCAGTTTTCATGAGTTTCCTGATACCAATTTTTAGCTTGACTAAAGAACTAGAAAAATCCCTAAAACTGAAATTTGCTCGGGCACATGAGTTGAGTGTACTTGCGTTAACTAGTTGTCGAGCAAGATCTAATTTTGAAGTTTCCATATGCAATTCCTTTTGTGTTCTTAGAAATGCCTCCGCACTTCTGATTTTGAAACCAACAAACCTTTTGTTCTCCTAGTGGATGGTTTTAACATTTCCCAAGTTACATTCTTTTAGGACCAAAATATCTGAAAGCTGCCATTTGGTTTGGCATTACTCCTTGCCTCAAGCTTTCATTCTTTTGGTTAGGACTTTGACTAAATTCTATTTCTTTTATAGTGTAGTTTACTAGTGTGTTTGTCCTCCGTTTCTATGTTTCCTTCGATAGCCCAGATCATGTTCTTTTTTTGATAATAAATTTGAGTTCATTATTTCTACAAAGTTTTGTATCATGTTCTCGCATTCCTACTGTTGCTTCCTTAATGAATAAAAGAGAGGTTAAGTAATAATGAAGCTTACTCTGCCTGAAATAGCAATCCTCCTTTCCTATCTCTTTTTTATTCTTCTTAATGACCAATAGCAGAAAATTCAGTTCTTCGGTTTCTATTTTTGTGGTTTCAGGATTAATTTGACATTCTGGGATGACTTGGCTAATGTTGCCAATCAACATGTGGAGAAAGGACAGCAGATATATGTGTCTGGTCGCCTAATATCAGATACAGTTGAAGGTGATGATGGAAAAGAACAGACTTATTATAAGGTTGCTTTACTTGTAATTTTCTTTGGGTGTTGTATGGACATCATGTTTGTCCTATATCTGTATGACTGAACTTTTGCGTTCTTTTTTGGCAGGTGGTCGTTCAGCAATTGAATTTTATTGAGAAGAGCTCTCCTCCTATTGCCTCATATAACGGGGACTCTAATTCCATGGCACCACGTAAGTAATACTTCTTTACCTAAAATCTTTCTTTACTGCTAGAGCTGGATGCACATCTTTCTGGCATCAAATTTTGAGAGGTTTCCACTTGTGGCTTTGCAGGTAAAAAGCAAAATAATTTTGCTGCAAATACCACTGGATCCACGGAGGAGCTATGGCAAGCTTTCTTTG</genome_strand>
        <mrna_strand>TGTGTATGAGTATGAAAGATATGCTGGGGTTTCTCAGTACCCACGGCCTTCCGAAGTACAGTGGAAGAAGGAGCTTTGTAATTCAGTGCAGCTTATTGGTAATGTTGCAGTGCCGGTTCAAATTAAGCATCTTAATTCCGGAAAAGTTGTAGCTTGGACTCGTCTTGCTGTAAGGAAGTCGCAAAACGACACTACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAATTTGACATTCTGGGATGACTTGGCTAATGTTGCCAATCAACATGTGGAGAAAGGACAGCAGATATATGTGTCTGGTCGCCTAATATCAGATACAGTTGAAGGTGATGATGGAAAAGAACAGACTTATTATAAG............................................................................................GTGGTCGTTCAGCAATTGAATTTTATTGAGAAGAGCTCTCCTCCTATTGCCTCATATAACGGGGACTCTAATTCCATGGCACCAC......................................................................................................GTAAAAAGCAAAATAATTTTGCTGCAAATACCACTGGATCCACGGAGGAGCTATGGCAAGCTTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398137" ref_strand="+" ref_description="SGN-E398137 [TUS-41-G18](-)">
      <seq>acatacaaatctgctagggatgaacaagtttcagttttgtaaactatctcgatcttttattagtttcacgggatatatagatctagatctacatgtacaaatagttttatccttcttttttttttttttggaagaatttccttgtgtattatgtacgagtataaatatacgggaagaaatacaaaactttagcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107147" stop="106350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106847" g_stop="106644" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E398137" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106847" e_stop="106644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTTTTTTTT-TTTGGAAGAATTTCCTTGTGTATTATGTACGAGTATAAATATACGGGAAGAAATACAAAACTTTAGCACAACATGATGC</genome_strand>
        <mrna_strand>ACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTTTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTTTTTTTTTTTTGGAAGAATTTCCTTGTGTATTATGTACGAGTATAAATATACGGGAAGAAATACAAAACTTTAGCACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720530" ref_strand="+" ref_description="SGN-E720530 [FC11AD02]">
      <seq>aatcggccgaattgattctttctaatcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaagctaaaggtctagcatgtctataaaaacatggaaatatatataaacatacatacaaatctgctagggatgaacaagtttcagttttgtaaactatctcgatcttctattagtttcacgggatatatagatctagatctacatgtacaaatagttttatccttctttttttttttttgggaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107934" stop="106410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107644" g_stop="107438" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="412" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106714" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="743" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E720530" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107644" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTTTTTTTTTTTGGAAGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATTCTTTCTA-ATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTTTTTTTTTTTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357460" ref_strand="+" ref_description="SGN-E357460 [cTOS-23-I23]">
      <seq>ttcaaatcaatcattctttctaaatcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaagctaaaggtctagcatgtctataaaaacatggaaatatatataaacatacatacaaatctgctagggatgaacaagtttcagttttgtaaactatctcgatcttctattagtttcacgggatatatagatctagatctacatgtacaaatagttttatccttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107942" stop="106429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107642" g_stop="107438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="411" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106729" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="727" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E357460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107642" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTT</genome_strand>
        <mrna_strand>TTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395178" ref_strand="+" ref_description="SGN-E395178 [TUS-41-G18]">
      <seq>atcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaaactaaaggtctagcatgtctataaaaacatggaaatatatataaacatacatacaaatctgctagggatgaacaagttttcattttgtaaactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107919" stop="106499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107619" g_stop="107438" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="388" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106799" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="634" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E395178" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107619" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCT</genome_strand>
        <mrna_strand>ATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAACTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTTCATTTTGTAAACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355238" ref_strand="+" ref_description="SGN-E355238 [cTOS-18-G4]">
      <seq>tcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaagctaaaggtctagcatgtctataaaaacatggaaatatatataaacatacatacaaatctgctaaggatgaaccagtttcagttttgtaaactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107918" stop="106499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107618" g_stop="107438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="387" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106799" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="633" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E355238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107618" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCT</genome_strand>
        <mrna_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAAGGATGAACCAGTTTCAGTTTTGTAAACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354765" ref_strand="+" ref_description="SGN-E354765 [cTOS-19-G9]">
      <seq>tcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaagatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcgaaaggcttagaattatcaaaggatctgaagctaaaggtctagcatgtctataaaaacatggaaatatatataaacatacctaccaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107918" stop="106534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107618" g_stop="107438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="387" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106834" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="598" r_length="211" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E354765" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107618" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGC</genome_strand>
        <mrna_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCGAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACCTACCAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354908" ref_strand="+" ref_description="SGN-E354908 [cTOS-19-E15]">
      <seq>ttcaaatcaatcattctttctaaatcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaagctaaaggtctagcatgtctataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107942" stop="106569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107642" g_stop="107438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="411" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106869" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="587" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E354908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107642" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAA</genome_strand>
        <mrna_strand>TTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273955" ref_strand="+" ref_description="SGN-E273955 [cLEN-7-F14]">
      <seq>tcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaagtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaagaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaagtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatgggagatgtttataagttcttgcaaaaggcttagaattatcaaaggatctgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107918" stop="106594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107618" g_stop="107438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="387" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106894" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="538" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E273955" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107618" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGC</genome_strand>
        <mrna_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAAGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAAGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAAGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355028" ref_strand="+" ref_description="SGN-E355028 [cTOS-19-H10]">
      <seq>tcatgagaatttacgagaaggatatcaatgatcttgaggcaactgagctaagattaggtttgcctgggataataaacgatgaatcttcaacatcaactagtacttctaaaaatagcagaaaaagaccttcatctagtagtgtaaatgaaaatgaacaacaagactcagctcctgcaccaaaagcacaagttgttggttggccaccagttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaacatatgaagacaaggatggtgattggatgcttgttggtgatgtaccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107918" stop="106646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107618" g_stop="107438" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107343" g_stop="107138" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="387" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107044" g_stop="106946" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="486" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E355028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107618" e_stop="107438"/>
          <exon e_start="107343" e_stop="107138"/>
          <exon e_start="107044" e_stop="106946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAAGTAAGTGTTGTTTGTTTTTTACTTTTTTTTTTTTTTTTGAAAATAATGGATCAATTTTTTAACAATTTTTTTTTTTTTGTTATGATAATTTCAGAGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGG</genome_strand>
        <mrna_strand>TCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA..............................................................................................AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747644" ref_strand="+" ref_description="SGN-E747644 [GI|3043896]">
      <seq>agttcgatcatacaggaaaaatcatgtgtctaaattatcagaatctgataataattcctcaggaatgtatttaaaagttagcatggatggagcaccttatttgaggaaaattgatcttcaggtttacaaaagttatcaagagctactcaaggctttacaaagcatgttcaagtgcactattggagtgtattcagaaagagaaggatataatggatctgattatgcaccaatatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="107619" stop="106689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107319" g_stop="107138" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107044" g_stop="106989" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="238" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E747644" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107319" e_stop="107138"/>
          <exon e_start="107044" e_stop="106989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTGGTAAGTTTCGTGTTATACTGTCAGTGTATATAATATAAAATAGTAAAGTCTTAAGTAGAAATATACTTATGTTTTTATGTTGAATAATTTCAGGAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAA</genome_strand>
        <mrna_strand>AGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG.............................................................................................GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAATATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377456" ref_strand="+" ref_description="SGN-E377456 [TUS-20-B17](-)">
      <seq>tttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacagatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacctttcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataagatgtaatctttttgacatttaatgcttaaggtcgaatactttactttgtatgagttctttttctatattttgtgaaagggtgcaatctttttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="114873" stop="46215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114573" g_stop="114423" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113407" g_stop="113015" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="606" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113014" i_stop="112879" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.191" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112878" g_stop="112857" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="628" r_length="22" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E377456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114573" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113407" e_stop="113015"/>
          <exon e_start="112878" e_stop="112857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCATCCTTCATATTATTACTTACTTTTTAGCTGGACTTTACTACAAAACTCAAATGATTAAACATATATAGATATAATTTTGGTTTCTTGCTCGGTGTTTAGACTAATTACTACATGTCAGAATTCATTTAGGGTGACATTAGAAATAGAAATT</genome_strand>
        <mrna_strand>TTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG................................................................................................................................................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTA........................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325685" ref_strand="+" ref_description="SGN-E325685 [cTOC-15-G24]">
      <seq>agcaatgcaacgtgtcctgaagagacatatatctacaggaaagtcccctaatgttgctaaatggaggatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacctttcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataagatgtaatctttttgacatttaatgcttaaggtcgaatactttactttgtatgagttctttttctatattttgtgaaagggtgcaatctttttagctctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="114033" stop="112708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113733" g_stop="113696" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113596" g_stop="113568" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="67" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113407" g_stop="113007" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="468" r_length="401" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E325685" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113733" e_stop="113696"/>
          <exon e_start="113596" e_stop="113568"/>
          <exon e_start="113407" e_stop="113007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCAT</genome_strand>
        <mrna_strand>AGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG...................................................................................................GAAAGTCCCCTAATGTTGCTAAATGGAGG................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328199" ref_strand="+" ref_description="SGN-E328199 [cTOC-21-G4]">
      <seq>agcaatgcaacgtgtcctgaagagacatatatctacaggaaagtcccctaatgttgctaaatggaggatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacctttcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataagatgtaatctttttgacatttaatgcttaaggtcgaatactttactttgtatgagttctttttctatattttgtgaaagggtgcaatctttttagctctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="114033" stop="112708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113733" g_stop="113696" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113596" g_stop="113568" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="67" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113407" g_stop="113007" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="468" r_length="401" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E328199" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113733" e_stop="113696"/>
          <exon e_start="113596" e_stop="113568"/>
          <exon e_start="113407" e_stop="113007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCAT</genome_strand>
        <mrna_strand>AGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG...................................................................................................GAAAGTCCCCTAATGTTGCTAAATGGAGG................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323581" ref_strand="+" ref_description="SGN-E323581 [cTOC-2-J15]">
      <seq>tcctgtagaagatgatatctttgtgaaccttcaacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacaggaaagtcccctaatgttgctaaatggaggatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacctttcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataaaatgtaatctttttgacatttaatgcttaaagtcgaatactttactttgtatgagttctttttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115379" stop="112742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115079" g_stop="115047" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114509" g_stop="114423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="120" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="182" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113596" g_stop="113568" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="211" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113407" g_stop="113042" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="577" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E323581" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115079" e_stop="115047"/>
          <exon e_start="114509" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113596" e_stop="113568"/>
          <exon e_start="113407" e_stop="113042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTAT</genome_strand>
        <mrna_strand>TCCTGTAGAAGATGATATCTTTGTGAACCTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG...................................................................................................GAAAGTCCCCTAATGTTGCTAAATGGAGG................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAAATGTAATCTTTTTGACATTTAATGCTTAAAGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389469" ref_strand="+" ref_description="SGN-E389469 [TUS-4-B3](-)">
      <seq>tgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacagatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacctttcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataagatgtaatctttttgacatttaatgcttaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="114045" stop="112776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113745" g_stop="113696" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113407" g_stop="113076" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="382" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E389469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113745" e_stop="113696"/>
          <exon e_start="113407" e_stop="113076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGT</genome_strand>
        <mrna_strand>TGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG................................................................................................................................................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550399" ref_strand="+" ref_description="SGN-E550399 [TUS-5-B3](-)">
      <seq>caatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaataagtttctaaagacgcagaaggaatagacatatggtgaagttcttttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgatagttgaacctactactctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacagatagattacaatgacaggcccaatgctgagctaattatgaagtccaagaacaatgcagatttggtgatcaagtcgattgacgaattgaggtgagcccccgactcgtcacctgtagtaagagtggtgagggaaaatttgaatggtggcatcaaaagttagccaaatagaattttatccattggcttgaatttgatgagcatgcagaacccctcgttgcgtttacgcttagaggtgatgaataagttcaaggggactggaaataatcatgcttacaatacacttttttcccttgcaaataagatgtaatctttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115039" stop="112793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114739" g_stop="114423" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="379" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113407" g_stop="113093" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="694" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E550399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114739" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113407" e_stop="113093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGA</genome_strand>
        <mrna_strand>CAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAACCTACTACTCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG................................................................................................................................................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCCCTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389732" ref_strand="+" ref_description="SGN-E389732 [TUS-4-B3]">
      <seq>gcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaatttgaagtgaagaattacgttatgcaactgtgaaagctggccgctgggtaatgttttagatatgcaggcctgctgaggtgtcttcttattggaagtgttagctcaatcagtgttctcaatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaataagtttctaaagacgcagaaggaatagacatatggtgaagttcttttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatggcacgtgtcctgaagagacatatatctacagatagattacnatgacaggccccatgctngagctattatgaagtccaagaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115804" stop="113054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="47" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="106" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="180" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114856" g_stop="114423" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="614" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="676" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113407" g_stop="113354" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="730" r_length="54" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E389732" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114856" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113407" e_stop="113354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCT-GAGCTAATTATGAAGTCCAAGAACAAT</genome_strand>
        <mrna_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA..............................................................................................................................................................................................ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGGCACGTGTCCTGAAGAGACATATATCTACAG................................................................................................................................................................................................................................................................................................ATAGATTACNATGACAGGCCCCATGCTNGAGCT-ATTATGAAGTCCAAGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729177" ref_strand="+" ref_description="SGN-E729177 [LA20AH11]">
      <seq>ccttgttccaactgcagcagcagcatcaagccctaatttcaagcatattgttggtcttgctggccctcccggtgctggaaagagcactgttgcatctgaagtagttaagagagtcaataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggatcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctactgatagattacaatgacaggcccaatgctgagctaattatgaagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="117772" stop="113062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117472" g_stop="117431" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116554" g_stop="116362" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="235" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="266" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="325" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="399" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114509" g_stop="114423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="486" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="548" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113407" g_stop="113362" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="594" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E729177" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117472" e_stop="117431"/>
          <exon e_start="116554" e_stop="116362"/>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114509" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113407" e_stop="113362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAAGTAAGTTGTCCTTTTGCAAAGCTGTTAGATGCTTATCTGCATCTCAAAGCCGAAATCTCGGTTGCTACTTGTGGCTTTTCAAGATAACCATGGTTTATTTTGAATTACATCACTTCCTAACTTTAAGGCCTTACTAAATACTGACTGAGACCTGGAATAGGGAAAATGAAGAAGAGATGATTCCTTTAAATTTTGCTATTTCTAGTCTGCCTCTAGCATTTGGCTGGTTATGTGAATGAGATGTATCCAATAGAGGAATAATATGACCTGTGCCATAGAGAAAAGGAAAAGCGAGACTCAGACGACAGACCCTGTAGTCTGTACTCCCAAAGGGGAAAAAAAGGAAGAAGAAAGAAGAAGATATACCCCCAAGAAGTGACAACCAGAATGTATGTCTCTTTTATCTGTGTAAATATGTTAATAACAGAGTGAATATACATAAATATCATAGTCCCTAAATCAGCAGTGAGTCAGTCTCAATAATAAAAATATGCATGTCTGAGTTTCAAAATTGGAAGTTGAGCCAATATCGATAATATAAAACACATCTCTGAGTCTAGATAACATAACATGCATTGAATCATTTAAATGAGTAGAATTGTGTATCTTAATTTAGTGATTATGATGTTTATGGCTACAAACATCTACTCATTGACTCAAATATGCATATTTTTTGCTTTTATGTATATTAAAAAGTATCATTTTCTTGATATTTGTATTATTTACTTCTGTCATCTCTGTTTTTTTCACATTGCTTGTGCTTCATGGCTTTTATAACTACAAGCTGCTATTATTATCAACAAACACTCAACTAAATTGGCATGTTGGCTGATTCAAAGAGGTCTCTTAAGGAGAACAACTTTCCTAATTATGCAGGCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCA</genome_strand>
        <mrna_strand>CCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACTG................................................................................................................................................................................................................................................................................................ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341672" ref_strand="+" ref_description="SGN-E341672 [cTOE-23-N22]">
      <seq>tgaagtagttaagagagtcgataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacaggaaagtcccctaatgttgctaaatggaggatagattacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="116800" stop="113265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116500" g_stop="116362" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="170" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="229" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="303" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114509" g_stop="114423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="390" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="452" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113596" g_stop="113568" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="481" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113407" g_stop="113394" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="495" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E341672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116500" e_stop="116362"/>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114509" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113596" e_stop="113568"/>
          <exon e_start="113407" e_stop="113394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTAAATGGAGGGTAAGCGCCTCACTTCTAATACGGCTCTTTTTTGAAAGAAAGAACAATTAAAATTAACAGTTAACTGTTAATCCCTTTTAAGATATCATCTAGCTCAATTCCTTTTTGTTCATTGGGTATTGAAACAATATTTTGGTTCATTGCTAAATTCTTTCCACAGATAGATTACAATGA</genome_strand>
        <mrna_strand>TGAAGTAGTTAAGAGAGTCGATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG...................................................................................................GAAAGTCCCCTAATGTTGCTAAATGGAGG................................................................................................................................................................ATAGATTACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719731" ref_strand="+" ref_description="SGN-E719731 [FC08CH09]">
      <seq>ggctccaatggaggcttcatcgttcccggcgaccttcacgaaactccgatatccattttcagagacattgttgagcaaaagagaagactttcctgtgtggattaggtgttatgcatctcctttgtccacgaagaatgcaactggaacttcactctgtcaagctggttttcgtactcggaagtggagtctgttgcaggtttcatgtagccgagagagagagattcctgtcatagaagctgggtgcatggatgacatatatgatgctttggctgaacaccttgttccaactgcagcagcagcatcaagccctaatttcaagcatattgttggtcttgctggccctcccggtgctggaaagagcactgttgcatctgaagtagttaagagagtcaataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggagtccaacaactaactggtcagcctgtttcataggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagcaatgcaacgtgtcctgaagagacatatatctacaggaaagtcccctaatgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="120588" stop="113276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120289" g_stop="120228" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119745" g_stop="119612" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="196" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119436" g_stop="119393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="240" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117508" g_stop="117431" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="318" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116554" g_stop="116362" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="511" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116361" i_stop="115535" i_length="827">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115534" g_stop="115472" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="574" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="633" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="707" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="114509" g_stop="114423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="794" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="113757" g_stop="113696" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="856" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="113596" g_stop="113576" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="877" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E719731" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120289" e_stop="120228"/>
          <exon e_start="119745" e_stop="119612"/>
          <exon e_start="119436" e_stop="119393"/>
          <exon e_start="117508" e_stop="117431"/>
          <exon e_start="116554" e_stop="116362"/>
          <exon e_start="115534" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114509" e_stop="114423"/>
          <exon e_start="113757" e_stop="113696"/>
          <exon e_start="113596" e_stop="113576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCAATGGAGGCTTCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAGGTTTTTAGGATTTAAATTTACTCTATAATTACTATAGATTAATAATAATTCAACAAAAATCATATTGTTCAACTGCTATACTCTTGATTCCATTTATTGATCAATTTCCGTTTGCTAAATAATTTTTGTTGCAATTATTGTATATTTAACATTAAAATTTTCGATTATGGAAATGTATGCGATCGTAGTGAACAATACAGATAAGCAATTGAAAGAATAAAATTATTCCGGTGCCAATTTCGCCTTTTATGTTGCCAATTGTGGCGAGTTTCTGCAAAGAGTGTTCAAAATCTAACATATGGATATGTAAGTGTGAAAAGTAATACTTAGACGTTATATTCGGAGGATAATTTTTGGGTGAAGGGTGTTCGACGGACTATTCTTTTATCTGGGGTTTGGATTGGTGTTGACAGCCGGAGTTGAACATTATATTACGTATACTTCAAAGATAATAGTTTAAAACAATAATTTGGGCTTTGCAGAGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAGGTTCAGTTTCTATGGATAACTTGACTTGTATAAAACTGAGAAGATGTGGAATAAAGACAGTTTTGTTTTCATTTGATTAGACCTGTATATTTGTCTAGATGTATGAAAGTATCTCGTTTTTAAAATCATTGATGATGAGTGCAGTTTGCAAATGTAATTTGTATCTCTTTTTCAGGTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGGGTATGCTGGCTATCCAAAACCACATAACAAATATTTTGAACTTTAAAGTTTCAACTATTTCTGTTCTGCCGTACCCTAATGCCTTCTTTTGTTTCTTGGATTTGCTTGTTGAACTTTATTGCTTTTTCAGTCTCCTTTTGCTCCTATTATCTATATCAGCCTACGATACTGTCCTAGTAGGATCATACTGCTTGCAAGATTTCGTTATTAAGAGCATTTATTGGGCGTGAGGCATGATAAGTGCTTTTCTCTAGTTTTTTCTTACTGGCTATTTTCTTTATCAGTCATTTTGTACTGCTGATTTTTACATATTCTTCTGTGAGACTTTGTTAAGCAACCAAAAGAGACCTCCAATTCGTAAGAGCTGACTAAGTGGGTTATGTGTCATCTCATAGCGTGTTTTCTATTGTTTCTGGTGGTTGAAGCTAATGGAAGAAGGTCGAAATTCGAAATAGTTTCTTCTATGAATAGACACTGCAAAAGTTCTGGATGTTTTTAATCACTCTGTGGCTCCATATACATCAATTTATAGCATTCATTTTCTCGTTTAATGAGTGAAGAACTGAAGATAGGATCTTGCCTCATTTCTTTACTCAATTTCAGACATGTCGTTGTATATTCTGAATTGGATAGGGCCATATGCACTTCTCTAAGCTGCATTCCTGGTTGTGCAAGTCAAGTTATTAGCACGAGCAGCTCATTTAGGGACCTCTTCATAACTAACTGTCTGATTATATGGACTGGGATTCTCAATATAATTTATATGAAAACTAGACACTCGCTCTTTCTGGAATTACTGGCTGACTTGGTTGCAGTGAGTTTGTCAATTCTATACCAACTATGTTTTACTGGCATCGTTCCTGAGGCATATGTGCGAAAGAACTTCCCAATGTTGTGGGACTCATCTCTGTTCAATATTTGGTCAACAGTATGGTGACCATGCTGCACTATTGCATTTTTTCAGGCAGGCCTAGTGTTCATTCATTCATTCAGTTCTGAACAGGCCTATGACAAATGGAGATGTAGTTCTTCCTTAGATATAGGACAAATCACTCTAGTGTATTATTTAATGCTTGCAAAGTAGGACGAGCAATTGGTGTGTTTCATGTTCCTTGGAGATGAAATACCAGTACCAATATTACGACGCAAGCAACCACCGAGCTTGTGGACTCCTTTTTTGTTTTTGTGTAGATTGATCAAGTTAAATTATAGGAGTTTATATTGCTCGTACAATGGTCTCATGCTGGAATGTGAATGCAGGAAAGTTAAAAGAGACTTTAAGAGGATGAAAAGGCATCTGGAGTGATAGAGGAGGAGAATTAGTATTGAATAATGATGGTATAGATTGATATGAGCTGTACCTGTCTATAAGATTTTCTTTGTATAATACATGGACTACATCGCAAGACCAGGCCACGTCCATTTGTGGTTGACACTTAATATTAGTTGTTTGTTTTTTGTTTGTTGTATTTTTGTTTCTATTGGCTTGGTCTTGCCTAATCCTATCCTCAATATGATTTCTCACATAGTAGGCCTTTATCTGTGCTACCAGCAAGACTACTTATTACTTTAAAAGGATAGCTCAACTCCGGAAACAAATCAGTCTCTGACTGGAAAGGTTGAAACAATCTAGACTGAATATGTCCTGTTTTCTCTTCAATAGATAGTAGATGCCTCCTTTTCTACATATGGCTATTTCATAGCTATTATGTGTTTCCTGCCTATATGCTAAAAGATAAAGCCTGTGCAGTTGCATGTCCCACTCGGCTTGAGAAAATCTTCCCTTGTGATGGGTAAAGTTTAGCTTTGTCCACCTTATACAACTGTAATATTCTTTATTAATTTGCATTTATATGTTTTACTTCATATTTGTGTACCTTGTAGGTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAAGTAAGTTGTCCTTTTGCAAAGCTGTTAGATGCTTATCTGCATCTCAAAGCCGAAATCTCGGTTGCTACTTGTGGCTTTTCAAGATAACCATGGTTTATTTTGAATTACATCACTTCCTAACTTTAAGGCCTTACTAAATACTGACTGAGACCTGGAATAGGGAAAATGAAGAAGAGATGATTCCTTTAAATTTTGCTATTTCTAGTCTGCCTCTAGCATTTGGCTGGTTATGTGAATGAGATGTATCCAATAGAGGAATAATATGACCTGTGCCATAGAGAAAAGGAAAAGCGAGACTCAGACGACAGACCCTGTAGTCTGTACTCCCAAAGGGGAAAAAAAGGAAGAAGAAAGAAGAAGATATACCCCCAAGAAGTGACAACCAGAATGTATGTCTCTTTTATCTGTGTAAATATGTTAATAACAGAGTGAATATACATAAATATCATAGTCCCTAAATCAGCAGTGAGTCAGTCTCAATAATAAAAATATGCATGTCTGAGTTTCAAAATTGGAAGTTGAGCCAATATCGATAATATAAAACACATCTCTGAGTCTAGATAACATAACATGCATTGAATCATTTAAATGAGTAGAATTGTGTATCTTAATTTAGTGATTATGATGTTTATGGCTACAAACATCTACTCATTGACTCAAATATGCATATTTTTTGCTTTTATGTATATTAAAAAGTATCATTTTCTTGATATTTGTATTATTTACTTCTGTCATCTCTGTTTTTTTCACATTGCTTGTGCTTCATGGCTTTTATAACTACAAGCTGCTATTATTATCAACAAACACTCAACTAAATTGGCATGTTGGCTGATTCAAAGAGGTCTCTTAAGGAGAACAACTTTCCTAATTATGCAGGCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAGGTACTATTCCAACTATTGTTTCAACTCTTTTAACTAGAAAAGATGTAGAAAAACACTGGGTAATGTAGACTAATTGGCGCTCTCTCATCTATGTTATAGGAAAGTCCCCTAATGTTGCTA</genome_strand>
        <mrna_strand>GGCTCCAATGGAGGCTTCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAGGTGTTATGCATCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG...............................................................................................................................................................................GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG...................................................................................................GAAAGTCCCCTAATGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377457" ref_strand="+" ref_description="SGN-E377457 [TUS-20-B17]">
      <seq>cttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaatttgaagtgaagaattacgttatgcaactgtgaaagctggccgctgggtaatgttttagatatgcaggcctgctgaggtgtcttcttattggaagtgttagctcaatcagtgttctcaatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaataagtttctaaagacgcagaaggaatagacatatggtgaagttcttttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttggaaggaggtatcctccatgtttgatgagaaatggttcgtcgatgttgatcttgagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115804" stop="113431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="46" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="105" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="179" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114856" g_stop="114423" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="613" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113757" g_stop="113731" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="640" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E377457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114856" e_stop="114423"/>
          <exon e_start="113757" e_stop="113731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATGGTAAGATGATCTTTCTGATCCATGTTTTTCTTTAGACAACAGGGAAGGAATCCCTGGTGAACGCACCTTGTTCACCTTAATATAGTAAACTGGATTCTGAGGGATAACTTTGAGTTTTTCTGCAAGTAAAAAATTGAGTTTACGTTGCCTAGCTCAAAAGATGTAATTGAGTTTGTGATATGTCTTTGCTATTGGTTTACTGATTATTTGACTTCTATCAATTAATGGGATGTATTTGTGAATCAATATCAAGATATCACCAAAGGATATAGTGGGATGGGATACGTTCCCCCTTAACGAAAGGTCTTGGATTCAAGCCATGAAAATGGAGAAACTCCTGCTTGGGAGCACCTCTTATTTTAATGGGCCCTATGCAACATGAACCTGGATTTGTCAGACTAGTGGTACCAGATACCGGATGGTTTAAGAAAGGGATCAATGTCAAGATCCCTGAAACTATGTTGCTAAAACCAGAAAATGCCTGTTTTATTCATATACAGTAGATGTGGTATCCTGAGTTTCTTAGCTATAGGTTATCAAAGCGCGCTGGTAACAGGATCCGTTGAATTGTTAAAAGCCTGGCTACTTTGCAGCATTATATGAGAACAAAGCTTTAGTTGTTCTTGATGTGGTAAGACGCTTGTCTTATATGTATTTACTTTTAGGTTCGTCGATGTTGATCTTGAGAAAGC</genome_strand>
        <mrna_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA..............................................................................................................................................................................................ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCGATGTTGATCTTGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345291" ref_strand="+" ref_description="SGN-E345291 [cTOF-13-D8]">
      <seq>tcgttcccggcgaccttcacgaaactccgatatccattttcagagacattgttgagcaaaagagaagactttcctgtgtggattaagtgttatgcgtctcctttgtccacgaagaatgcaactggaacttcactctgtcaagctggttttcgtactcggaagtggagtctgttgcaggtttcatgtagccgagagagagagattcctgtcatagaagctgggtgcatggatgacatatatgatgctttggctgaacaccttgttccaactgcagcagcagcatcaagccctaatttcaagcatattgttggtcttgctggccctcccggtgctggaaagagcactgttgcatctgaagtagttaagagagtcaataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcacacaaaatagtgatagttgaaggtaattatctgcttcttagagatggtgcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="120570" stop="114154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120270" g_stop="120228" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119745" g_stop="119612" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="177" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119436" g_stop="119393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="221" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117508" g_stop="117431" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="299" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116554" g_stop="116362" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="492" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="523" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="582" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="655" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="114509" g_stop="114454" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="711" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E345291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120270" e_stop="120228"/>
          <exon e_start="119745" e_stop="119612"/>
          <exon e_start="119436" e_stop="119393"/>
          <exon e_start="117508" e_stop="117431"/>
          <exon e_start="116554" e_stop="116362"/>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114509" e_stop="114454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAGGTTTTTAGGATTTAAATTTACTCTATAATTACTATAGATTAATAATAATTCAACAAAAATCATATTGTTCAACTGCTATACTCTTGATTCCATTTATTGATCAATTTCCGTTTGCTAAATAATTTTTGTTGCAATTATTGTATATTTAACATTAAAATTTTCGATTATGGAAATGTATGCGATCGTAGTGAACAATACAGATAAGCAATTGAAAGAATAAAATTATTCCGGTGCCAATTTCGCCTTTTATGTTGCCAATTGTGGCGAGTTTCTGCAAAGAGTGTTCAAAATCTAACATATGGATATGTAAGTGTGAAAAGTAATACTTAGACGTTATATTCGGAGGATAATTTTTGGGTGAAGGGTGTTCGACGGACTATTCTTTTATCTGGGGTTTGGATTGGTGTTGACAGCCGGAGTTGAACATTATATTACGTATACTTCAAAGATAATAGTTTAAAACAATAATTTGGGCTTTGCAGAGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAGGTTCAGTTTCTATGGATAACTTGACTTGTATAAAACTGAGAAGATGTGGAATAAAGACAGTTTTGTTTTCATTTGATTAGACCTGTATATTTGTCTAGATGTATGAAAGTATCTCGTTTTTAAAATCATTGATGATGAGTGCAGTTTGCAAATGTAATTTGTATCTCTTTTTCAGGTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGGGTATGCTGGCTATCCAAAACCACATAACAAATATTTTGAACTTTAAAGTTTCAACTATTTCTGTTCTGCCGTACCCTAATGCCTTCTTTTGTTTCTTGGATTTGCTTGTTGAACTTTATTGCTTTTTCAGTCTCCTTTTGCTCCTATTATCTATATCAGCCTACGATACTGTCCTAGTAGGATCATACTGCTTGCAAGATTTCGTTATTAAGAGCATTTATTGGGCGTGAGGCATGATAAGTGCTTTTCTCTAGTTTTTTCTTACTGGCTATTTTCTTTATCAGTCATTTTGTACTGCTGATTTTTACATATTCTTCTGTGAGACTTTGTTAAGCAACCAAAAGAGACCTCCAATTCGTAAGAGCTGACTAAGTGGGTTATGTGTCATCTCATAGCGTGTTTTCTATTGTTTCTGGTGGTTGAAGCTAATGGAAGAAGGTCGAAATTCGAAATAGTTTCTTCTATGAATAGACACTGCAAAAGTTCTGGATGTTTTTAATCACTCTGTGGCTCCATATACATCAATTTATAGCATTCATTTTCTCGTTTAATGAGTGAAGAACTGAAGATAGGATCTTGCCTCATTTCTTTACTCAATTTCAGACATGTCGTTGTATATTCTGAATTGGATAGGGCCATATGCACTTCTCTAAGCTGCATTCCTGGTTGTGCAAGTCAAGTTATTAGCACGAGCAGCTCATTTAGGGACCTCTTCATAACTAACTGTCTGATTATATGGACTGGGATTCTCAATATAATTTATATGAAAACTAGACACTCGCTCTTTCTGGAATTACTGGCTGACTTGGTTGCAGTGAGTTTGTCAATTCTATACCAACTATGTTTTACTGGCATCGTTCCTGAGGCATATGTGCGAAAGAACTTCCCAATGTTGTGGGACTCATCTCTGTTCAATATTTGGTCAACAGTATGGTGACCATGCTGCACTATTGCATTTTTTCAGGCAGGCCTAGTGTTCATTCATTCATTCAGTTCTGAACAGGCCTATGACAAATGGAGATGTAGTTCTTCCTTAGATATAGGACAAATCACTCTAGTGTATTATTTAATGCTTGCAAAGTAGGACGAGCAATTGGTGTGTTTCATGTTCCTTGGAGATGAAATACCAGTACCAATATTACGACGCAAGCAACCACCGAGCTTGTGGACTCCTTTTTTGTTTTTGTGTAGATTGATCAAGTTAAATTATAGGAGTTTATATTGCTCGTACAATGGTCTCATGCTGGAATGTGAATGCAGGAAAGTTAAAAGAGACTTTAAGAGGATGAAAAGGCATCTGGAGTGATAGAGGAGGAGAATTAGTATTGAATAATGATGGTATAGATTGATATGAGCTGTACCTGTCTATAAGATTTTCTTTGTATAATACATGGACTACATCGCAAGACCAGGCCACGTCCATTTGTGGTTGACACTTAATATTAGTTGTTTGTTTTTTGTTTGTTGTATTTTTGTTTCTATTGGCTTGGTCTTGCCTAATCCTATCCTCAATATGATTTCTCACATAGTAGGCCTTTATCTGTGCTACCAGCAAGACTACTTATTACTTTAAAAGGATAGCTCAACTCCGGAAACAAATCAGTCTCTGACTGGAAAGGTTGAAACAATCTAGACTGAATATGTCCTGTTTTCTCTTCAATAGATAGTAGATGCCTCCTTTTCTACATATGGCTATTTCATAGCTATTATGTGTTTCCTGCCTATATGCTAAAAGATAAAGCCTGTGCAGTTGCATGTCCCACTCGGCTTGAGAAAATCTTCCCTTGTGATGGGTAAAGTTTAGCTTTGTCCACCTTATACAACTGTAATATTCTTTATTAATTTGCATTTATATGTTTTACTTCATATTTGTGTACCTTGTAGGTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAAGTAAGTTGTCCTTTTGCAAAGCTGTTAGATGCTTATCTGCATCTCAAAGCCGAAATCTCGGTTGCTACTTGTGGCTTTTCAAGATAACCATGGTTTATTTTGAATTACATCACTTCCTAACTTTAAGGCCTTACTAAATACTGACTGAGACCTGGAATAGGGAAAATGAAGAAGAGATGATTCCTTTAAATTTTGCTATTTCTAGTCTGCCTCTAGCATTTGGCTGGTTATGTGAATGAGATGTATCCAATAGAGGAATAATATGACCTGTGCCATAGAGAAAAGGAAAAGCGAGACTCAGACGACAGACCCTGTAGTCTGTACTCCCAAAGGGGAAAAAAAGGAAGAAGAAAGAAGAAGATATACCCCCAAGAAGTGACAACCAGAATGTATGTCTCTTTTATCTGTGTAAATATGTTAATAACAGAGTGAATATACATAAATATCATAGTCCCTAAATCAGCAGTGAGTCAGTCTCAATAATAAAAATATGCATGTCTGAGTTTCAAAATTGGAAGTTGAGCCAATATCGATAATATAAAACACATCTCTGAGTCTAGATAACATAACATGCATTGAATCATTTAAATGAGTAGAATTGTGTATCTTAATTTAGTGATTATGATGTTTATGGCTACAAACATCTACTCATTGACTCAAATATGCATATTTTTTGCTTTTATGTATATTAAAAAGTATCATTTTCTTGATATTTGTATTATTTACTTCTGTCATCTCTGTTTTTTTCACATTGCTTGTGCTTCATGGCTTTTATAACTACAAGCTGCTATTATTATCAACAAACACTCAACTAAATTGGCATGTTGGCTGATTCAAAGAGGTCTCTTAAGGAGAACAACTTTCCTAATTATGCAGGCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGA</genome_strand>
        <mrna_strand>TCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG...............................................................................................................................................................................GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTC-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259553" ref_strand="+" ref_description="SGN-E259553 [cLEG-42-P13]">
      <seq>caaattctaagtgtgtatcaatcttgtgtgttcaattcactattttgaggggatattgatgaatggatgaatgagcaaagaatataagtttatcagttcatttctttgaattctgttaatgctctatgtaatggacacatttgacgtgaagaactacgttatgcaactgtgaaatctcatcgctgggtaatgttttagatatgcaggcctgctgaggtgtcttcttattggaagtgttagctcaatcagtgttctcaatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaataagtttctaaagacgcagaaggaatagacatatggtgaagttcttttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgatagttgaaggtaattatctgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115294" stop="114172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114994" g_stop="114472" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E259553" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114994" e_stop="114472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTC</genome_strand>
        <mrna_strand>CAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTCTGTTAATGCTCTATGTAATGGACACATTTGACGTGAAGAACTACGTTATGCAACTGTGAAATCTCATCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233248" ref_strand="+" ref_description="SGN-E233248 [cLED-6-G12]">
      <seq>cttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaatttgaagtgaagaattacgttatgcaactgtgaaagctggccgctgggtaatgttttagatatgcaggcctgctgaggtgtcttcttattggaagtgttagctcaatcagtgttctcaatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaataagtttctaaagacgcagaaggaatagacatatggtgaagttcttttgcctgttgctaacgttgcctcttccctttttatatattttttttcatggtgagttttgcagacacaaaatagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115804" stop="114194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="46" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="105" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="179" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114856" g_stop="114494" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="542" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E233248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114856" e_stop="114494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATA</genome_strand>
        <mrna_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA..............................................................................................................................................................................................ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550146" ref_strand="+" ref_description="SGN-E550146 [TUS-5-B3]">
      <seq>aaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaatttgaagtgaagaattacgttatgcaactgtgaaagctggccgctgggtaatgttttagatatgcaggcctgctgaggtgtcttcttattggaagtgttagctcaatcagtgttctcaatatgtttgtgctacttctgttataactttttcatacttgtgggcactggataactaattattaattgctctttcataggtgtctgctgatatttcaataatttgattggataattaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115797" stop="114318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115497" g_stop="115472" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="85" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="159" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114856" g_stop="114618" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="398" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E550146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115497" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114856" e_stop="114618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAAT</genome_strand>
        <mrna_strand>AAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA..............................................................................................................................................................................................ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203646" ref_strand="+" ref_description="SGN-E203646 [cLEC-15-C19]">
      <seq>atatatgatgctttggctgaacaccttgttccaactgcagcagcagcatcaagccctaatttcaagcatattgttggtcttgctggccctcccggtgctggaaagagcactgttgcatctgaagtagttaagagagtcaataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtangagatcctgtagaagatgatatctttgtgaaccttcagtgtctgctgatatttcaataatttgattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="117795" stop="114326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117495" g_stop="117431" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116554" g_stop="116362" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="258" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="289" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="348" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115046" i_stop="114659" i_length="388">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.184" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114658" g_stop="114626" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="455" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E203646" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117495" e_stop="117431"/>
          <exon e_start="116554" e_stop="116362"/>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114658" e_stop="114626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAAGTAAGTTGTCCTTTTGCAAAGCTGTTAGATGCTTATCTGCATCTCAAAGCCGAAATCTCGGTTGCTACTTGTGGCTTTTCAAGATAACCATGGTTTATTTTGAATTACATCACTTCCTAACTTTAAGGCCTTACTAAATACTGACTGAGACCTGGAATAGGGAAAATGAAGAAGAGATGATTCCTTTAAATTTTGCTATTTCTAGTCTGCCTCTAGCATTTGGCTGGTTATGTGAATGAGATGTATCCAATAGAGGAATAATATGACCTGTGCCATAGAGAAAAGGAAAAGCGAGACTCAGACGACAGACCCTGTAGTCTGTACTCCCAAAGGGGAAAAAAAGGAAGAAGAAAGAAGAAGATATACCCCCAAGAAGTGACAACCAGAATGTATGTCTCTTTTATCTGTGTAAATATGTTAATAACAGAGTGAATATACATAAATATCATAGTCCCTAAATCAGCAGTGAGTCAGTCTCAATAATAAAAATATGCATGTCTGAGTTTCAAAATTGGAAGTTGAGCCAATATCGATAATATAAAACACATCTCTGAGTCTAGATAACATAACATGCATTGAATCATTTAAATGAGTAGAATTGTGTATCTTAATTTAGTGATTATGATGTTTATGGCTACAAACATCTACTCATTGACTCAAATATGCATATTTTTTGCTTTTATGTATATTAAAAAGTATCATTTTCTTGATATTTGTATTATTTACTTCTGTCATCTCTGTTTTTTTCACATTGCTTGTGCTTCATGGCTTTTATAACTACAAGCTGCTATTATTATCAACAAACACTCAACTAAATTGGCATGTTGGCTGATTCAAAGAGGTCTCTTAAGGAGAACAACTTTCCTAATTATGCAGGCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGAT</genome_strand>
        <mrna_strand>ATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTANGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA....................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGCTGATATTTCAATAATTTGATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550070" ref_strand="+" ref_description="SGN-E550070 [TUS-5-B3]">
      <seq>gcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgaccatggtgtaggagatcctgtagaagatgatatctttgtgaaccttcaatttgaagtgaagaattacgttatgcaactgtgaaagctggccgctgggtaatgttttagatatgcaggcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="115804" stop="114482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="47" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="106" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115120" g_stop="115047" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="180" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114856" g_stop="114782" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E550070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115047"/>
          <exon e_start="114856" e_stop="114782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCAGTAAGTTTATATCTAGTTTGGATGCTATTTTCTGTCTGTGATTGCACCCTATCAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCT</genome_strand>
        <mrna_strand>GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA..............................................................................................................................................................................................ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263716" ref_strand="+" ref_description="SGN-E263716 [cLEG-60-M8]">
      <seq>tcatcgttcccggcgaccttcacgaaactccgatatccattttcagagacattgttgagcaaaagagaagactttcctgtgtggattaagtgttatgcgtctcctttgtccacgaagaatgcaactggaacttcactctgtcaagctggttttcgtactcggaagtggagtctgttgcaggtttcatgtagccgagagagagagattcctgtcatagaagctgggtgcatggatgacatatatgatgctttggctgaacaccttgttccaactgcagcagcagcatcaagccctaatttcaagcatattgttggtcttgctggccctcccggtgctggaaagagcactgttgcatctgaagtagttaagagagtcaataagttatggccccaaaagtctcgttcctttgattctcaagttgagcctccagaagttgctattgttcttccaatggatggattccacctttatcgtcatcagcttgatgcaatggaggatccaaaggaagcacacgcaagaaggggcgctccatggacgtttgaccccaatttactgctagaatgcctcaagactcttaaagatcagggatcagtgtactgtccgtcttttgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0135N15-jKVzW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0135N15.1" temp_strand="-" temp_description="C09HBa0135N15.1  AC214210.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0135N15_v1 upload_account_name:spain">
        <position start="120573" stop="114792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120273" g_stop="120228" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119745" g_stop="119612" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="180" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119436" g_stop="119393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="224" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117508" g_stop="117431" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="302" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116554" g_stop="116362" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="495" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115502" g_stop="115472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="526" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115358" g_stop="115300" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="585" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115120" g_stop="115092" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="614" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0135N15.1" gen_strand="-" ref_id="SGN-E263716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0135N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120273" e_stop="120228"/>
          <exon e_start="119745" e_stop="119612"/>
          <exon e_start="119436" e_stop="119393"/>
          <exon e_start="117508" e_stop="117431"/>
          <exon e_start="116554" e_stop="116362"/>
          <exon e_start="115502" e_stop="115472"/>
          <exon e_start="115358" e_stop="115300"/>
          <exon e_start="115120" e_stop="115092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAGGTTTTTAGGATTTAAATTTACTCTATAATTACTATAGATTAATAATAATTCAACAAAAATCATATTGTTCAACTGCTATACTCTTGATTCCATTTATTGATCAATTTCCGTTTGCTAAATAATTTTTGTTGCAATTATTGTATATTTAACATTAAAATTTTCGATTATGGAAATGTATGCGATCGTAGTGAACAATACAGATAAGCAATTGAAAGAATAAAATTATTCCGGTGCCAATTTCGCCTTTTATGTTGCCAATTGTGGCGAGTTTCTGCAAAGAGTGTTCAAAATCTAACATATGGATATGTAAGTGTGAAAAGTAATACTTAGACGTTATATTCGGAGGATAATTTTTGGGTGAAGGGTGTTCGACGGACTATTCTTTTATCTGGGGTTTGGATTGGTGTTGACAGCCGGAGTTGAACATTATATTACGTATACTTCAAAGATAATAGTTTAAAACAATAATTTGGGCTTTGCAGAGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAGGTTCAGTTTCTATGGATAACTTGACTTGTATAAAACTGAGAAGATGTGGAATAAAGACAGTTTTGTTTTCATTTGATTAGACCTGTATATTTGTCTAGATGTATGAAAGTATCTCGTTTTTAAAATCATTGATGATGAGTGCAGTTTGCAAATGTAATTTGTATCTCTTTTTCAGGTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGGGTATGCTGGCTATCCAAAACCACATAACAAATATTTTGAACTTTAAAGTTTCAACTATTTCTGTTCTGCCGTACCCTAATGCCTTCTTTTGTTTCTTGGATTTGCTTGTTGAACTTTATTGCTTTTTCAGTCTCCTTTTGCTCCTATTATCTATATCAGCCTACGATACTGTCCTAGTAGGATCATACTGCTTGCAAGATTTCGTTATTAAGAGCATTTATTGGGCGTGAGGCATGATAAGTGCTTTTCTCTAGTTTTTTCTTACTGGCTATTTTCTTTATCAGTCATTTTGTACTGCTGATTTTTACATATTCTTCTGTGAGACTTTGTTAAGCAACCAAAAGAGACCTCCAATTCGTAAGAGCTGACTAAGTGGGTTATGTGTCATCTCATAGCGTGTTTTCTATTGTTTCTGGTGGTTGAAGCTAATGGAAGAAGGTCGAAATTCGAAATAGTTTCTTCTATGAATAGACACTGCAAAAGTTCTGGATGTTTTTAATCACTCTGTGGCTCCATATACATCAATTTATAGCATTCATTTTCTCGTTTAATGAGTGAAGAACTGAAGATAGGATCTTGCCTCATTTCTTTACTCAATTTCAGACATGTCGTTGTATATTCTGAATTGGATAGGGCCATATGCACTTCTCTAAGCTGCATTCCTGGTTGTGCAAGTCAAGTTATTAGCACGAGCAGCTCATTTAGGGACCTCTTCATAACTAACTGTCTGATTATATGGACTGGGATTCTCAATATAATTTATATGAAAACTAGACACTCGCTCTTTCTGGAATTACTGGCTGACTTGGTTGCAGTGAGTTTGTCAATTCTATACCAACTATGTTTTACTGGCATCGTTCCTGAGGCATATGTGCGAAAGAACTTCCCAATGTTGTGGGACTCATCTCTGTTCAATATTTGGTCAACAGTATGGTGACCATGCTGCACTATTGCATTTTTTCAGGCAGGCCTAGTGTTCATTCATTCATTCAGTTCTGAACAGGCCTATGACAAATGGAGATGTAGTTCTTCCTTAGATATAGGACAAATCACTCTAGTGTATTATTTAATGCTTGCAAAGTAGGACGAGCAATTGGTGTGTTTCATGTTCCTTGGAGATGAAATACCAGTACCAATATTACGACGCAAGCAACCACCGAGCTTGTGGACTCCTTTTTTGTTTTTGTGTAGATTGATCAAGTTAAATTATAGGAGTTTATATTGCTCGTACAATGGTCTCATGCTGGAATGTGAATGCAGGAAAGTTAAAAGAGACTTTAAGAGGATGAAAAGGCATCTGGAGTGATAGAGGAGGAGAATTAGTATTGAATAATGATGGTATAGATTGATATGAGCTGTACCTGTCTATAAGATTTTCTTTGTATAATACATGGACTACATCGCAAGACCAGGCCACGTCCATTTGTGGTTGACACTTAATATTAGTTGTTTGTTTTTTGTTTGTTGTATTTTTGTTTCTATTGGCTTGGTCTTGCCTAATCCTATCCTCAATATGATTTCTCACATAGTAGGCCTTTATCTGTGCTACCAGCAAGACTACTTATTACTTTAAAAGGATAGCTCAACTCCGGAAACAAATCAGTCTCTGACTGGAAAGGTTGAAACAATCTAGACTGAATATGTCCTGTTTTCTCTTCAATAGATAGTAGATGCCTCCTTTTCTACATATGGCTATTTCATAGCTATTATGTGTTTCCTGCCTATATGCTAAAAGATAAAGCCTGTGCAGTTGCATGTCCCACTCGGCTTGAGAAAATCTTCCCTTGTGATGGGTAAAGTTTAGCTTTGTCCACCTTATACAACTGTAATATTCTTTATTAATTTGCATTTATATGTTTTACTTCATATTTGTGTACCTTGTAGGTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAAGTAAGTTGTCCTTTTGCAAAGCTGTTAGATGCTTATCTGCATCTCAAAGCCGAAATCTCGGTTGCTACTTGTGGCTTTTCAAGATAACCATGGTTTATTTTGAATTACATCACTTCCTAACTTTAAGGCCTTACTAAATACTGACTGAGACCTGGAATAGGGAAAATGAAGAAGAGATGATTCCTTTAAATTTTGCTATTTCTAGTCTGCCTCTAGCATTTGGCTGGTTATGTGAATGAGATGTATCCAATAGAGGAATAATATGACCTGTGCCATAGAGAAAAGGAAAAGCGAGACTCAGACGACAGACCCTGTAGTCTGTACTCCCAAAGGGGAAAAAAAGGAAGAAGAAAGAAGAAGATATACCCCCAAGAAGTGACAACCAGAATGTATGTCTCTTTTATCTGTGTAAATATGTTAATAACAGAGTGAATATACATAAATATCATAGTCCCTAAATCAGCAGTGAGTCAGTCTCAATAATAAAAATATGCATGTCTGAGTTTCAAAATTGGAAGTTGAGCCAATATCGATAATATAAAACACATCTCTGAGTCTAGATAACATAACATGCATTGAATCATTTAAATGAGTAGAATTGTGTATCTTAATTTAGTGATTATGATGTTTATGGCTACAAACATCTACTCATTGACTCAAATATGCATATTTTTTGCTTTTATGTATATTAAAAAGTATCATTTTCTTGATATTTGTATTATTTACTTCTGTCATCTCTGTTTTTTTCACATTGCTTGTGCTTCATGGCTTTTATAACTACAAGCTGCTATTATTATCAACAAACACTCAACTAAATTGGCATGTTGGCTGATTCAAAGAGGTCTCTTAAGGAGAACAACTTTCCTAATTATGCAGGCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAGGTAGGATTTCGTAATGGTTTCTTATTATTCATATTGCTTCATTTGACTGCAATTTCTTTATTTTTGGTCAAAACATTTGAATCTATGAAAAATGGACAAAGCCTTGTTGCTTGATGTGCATTGTTAGCTGGTTTCGACTACTCTAGATATAAGACAGGACAAAGGACAAATGTTGAGTTAGTCTTGTTTCCTACTTAACCTCCCCACCCCCACCCTTAACCCACACAATAACAACAACAAAAGCACCCTAGGGTGTGACCTAGTGGTCAATGCAGTGGTTGAGAATCTTGAGGTCTTAGGTTCAATACTCACTGGAGACAAACACTTGGTGATTCTTCCCACCTGTCCTAGTACCTGTTGCTGGTGGTAGGCAAAAGGTAAACCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCATAGTCATCCGAAAAAAGAAAAAAAAAGGAAAAAAGGCCAAATGGAAAAAAAAGAAATGAAAGAAACAAGAGGAGAAGATTAAATAACTTCAACAAGAGATGGAAGAGTAATATAAAAACAACAACAGCGGAGACGCATATATAAAACAATACTTTTTATGTTTTGATAACCATGGTGTCCGGGTCAGCTTGATACCTACCACCACCAATAGGTACCAGGTAAGTCTGTTCACTAAACCTCATGTTGCTCAACGCACTTCATTGACTACTAGGCCACACCTTTGGGTGCTATAAAATACTTTTTCAGCCTTTTTCTTTTGAATTAGAGTTATAAGTGACACTTGGTACATATATTGTGGATGGAGCATGTGTTTAGCAGATTTCATTTCAAACTTTGTAACAGTCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCGGTGAGTTCTTTTTTTCCCCACAGCAGATAGCTAATAAGTTTGTACACAGTTTAAGCATTAATTTCTAGTTTAAGTTTTAATCCTCTCTCTGGTATCTTTTTATGTTGAATCAGCTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAGGTGAGTGAATATTTACTTCATGAACGGATTTTTTAGCCTTTTGAGTTAATTTTGTGTGGGCTTGAATTCTGATGTAACATCATGTTTCATCAAGAGAGGAGGTCATTATTCTGCTTGCCTCTCCCTTGCTCTGTTCATCTAGTGAAAATTCTAAGATCTGGTATTCTTTTTTCTGCAAGGGATCAGTGTACTGTCCGTCTTTTGACCA</genome_strand>
        <mrna_strand>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG...............................................................................................................................................................................GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGGAAGCACACGCAAGAAGGGGCG.................................................................................................................CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG...................................................................................................................................................................................GGATCAGTGTACTGTCCGTCTTTTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>146</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2972" PGL_stop="6621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5046" e_stop="5231"/>
            <exon e_start="5345" e_stop="5704"/>
            <exon e_start="5787" e_stop="5867"/>
            <exon e_start="6063" e_stop="6621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5046" e_stop="5231" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="5232" i_stop="5344" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5345" e_stop="5704" e_length="360"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="5705" i_stop="5786" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5787" e_stop="5867" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.890" acc_prob="0.887">
            <gDNA_intron_boundary i_start="5868" i_stop="6062" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6063" e_stop="6621" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5046" stop="5231"/>
              <exon start="5345" stop="5655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5355" stop="5704"/>
              <exon start="5787" stop="5867"/>
              <exon start="6063" stop="6556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5355" stop="5704"/>
              <exon start="5787" stop="5850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5592" stop="5704"/>
              <exon start="5787" stop="5867"/>
              <exon start="6063" stop="6611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5664" stop="5704"/>
              <exon start="5787" stop="5867"/>
              <exon start="6063" stop="6621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379253" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG : GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG : GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG : ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</gDNA_template>
            <first_frame> Y  R  F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  *  S  V  *  E  R  *  A  S  K  *  W  S  W  W  R  C  T  K  R  Q  D  S  L  H  K  S  S  I  *  *  F  E  Q  I  Q  :  E  H  N  T  K  S  *  G  E  A  K  T  E  R  Q  E  Q  S  K  Y  E  P  R  K  S  T  W  *  T  W  S  K  W  C  K  S  S  N  *  I  K  G  E  K  S  F  K  K  S  S  S  K  S  Y  S  A  I  S  L  *  S  C  Q  G  F  I  Q  K  S  F  S  R  W  N  F  K  T  S  P  *  R  S  W  L  H  *  S  L  F  I  C  K  T  L  S  H  P  I  S  *  T  F  I  L  Q  A  L  L  P  G  W  E  K  L  S  G  E  S  *  *  :  V  L  K  L  *  K  L  F  W  S  L  S  T  G  T  V  Q  T  V  T  K  R  Q  K  S  P  Q  :  I  P  A  Q  E  S  K  *  E  C  F  S  Q  P  *  A  *  E  S  S  M  *  E  P  F  T  Q  S  F  P  *  R  K  A  A  A  N  Q  *  Q  I  E  V  S  S  W  A  S  C  R  *  S  A  F  Y  S  N  *  E  V  S  L  K  I  *  K  P  R  L  Y  Y  S  S  I  P  F  C  C  S  K  E  A  Q  *  E  S  R  I  R  I  T  *  *  F  E  I  N  L  P  T  S  T  E  G  S  S  L  I  *  G  Y  Q  S  L  W  D  K  L  I  S  V  P  S  M  L  I  Y  E  *  L  N  L  Q  R  T  F  G  L  G  L  N  L  V  P  S  D  V  R  L  A  G  I  S  N  S  I  L  S  F  C  V  S  V  N  *  Q  F  D  I  E  C  F  T  Y  G  K  R  V  S  F  S  L  V  L  *  K  </first_frame>
            <second_frame>  T  G  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G  E  V  S  K  N  A  K  L  P  N  N  G  H  G  G  D  V  Q  N  D  R  T  L  S  T  N  H  Q  S  D  N  S  S  R  S  R :   S  T  T  P  S  P  K  G  K  P  R  P  S  G  R  S  S  R  S  M  S  P  E  K  V  P  G  R  L  G  Q  N  G  A  S  L  P  I  E  S  K  E  R  S  L  S  K  S  P  P  P  K  A  T  Q  P  S  R  S  S  P  V  R  D  L  S  R  N  H  S  P  D  G  T  S  K  R  V  R  K  G  R  G  F  T  D  R  Y  S  F  A  R  R  Y  R  T  P  S  P  E  R  S  S  Y  R  P  Y  Y  Q  G  G  R  N  F  Q  G  N  R  D  R :   Y  S  S  Y  R  S  Y  S  G  R  S  P  Q  V  Q  Y  R  R  S  P  R  G  R  S  P  P  R :   Y  Q  R  R  S  R  S  R  S  V  S  R  S  P  R  R  E  S  R  R  C  R  S  P  S  R  S  P  S  P  R  E  K  R  Q  P  I  S  D  R  L  K  S  R  L  G  P  R  V  D  D  Q  H  S  I  P  T  R  R  S  A  S  R  S  R  S  R  D  S  T  T  P  R  S  P  S  A  A  P  R  K  H  S  R  K  V  G  S  A  S  P  N  S  S  R  S  T  S  P  P  R  P  R  G  L  V  S  Y  E  D  I  S  P  C  G  T  N  *  S  L  Y  P  P  C  S  Y  M  S  D  *  I  C  R  E  L  L  A  *  V  *  T  L  F  H  Q  M  F  A  *  L  G  F  P  T  Q  F  Y  H  F  V  F  Q  *  T  S  S  S  T  L  N  V  L  L  M  E  K  G  S  H  L  A  S  Y  Y  K  K </second_frame>
            <third_frame>   Q  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R  V  K  C  L  R  T  L  S  F  Q  I  M  V  M  V  E  M  Y  K  T  T  G  L  S  P  Q  I  I  N  L  I  I  R  A  D  P   : G  A  Q  H  Q  V  L  R  G  S  Q  D  R  A  A  G  A  V  E  V  *  A  Q  K  K  Y  L  V  D  L  V  K  M  V  Q  V  F  Q  L  N  Q  R  R  E  V  F  Q  K  V  L  L  Q  K  L  L  S  H  L  A  L  V  L  S  G  I  Y  P  E  I  I  L  Q  M  E  L  Q  N  E  S  V  K  V  V  A  S  L  I  V  I  H  L  Q  D  A  I  A  P  H  L  L  N  V  H  L  T  G  L  I  T  R  V  G  E  T  F  R  G  I  V  I   : G  T  Q  A  I  E  A  I  L  V  A  L  H  R  Y  S  T  D  G  H  Q  E  A  E  V  P  P   : D  T  S  A  G  V  E  V  G  V  F  L  A  A  L  G  V  R  V  V  D  V  G  A  L  H  A  V  L  P  L  E  K  S  G  S  Q  S  V  T  D  *  S  L  V  L  G  L  V  *  M  I  S  I  L  F  Q  L  G  G  Q  P  Q  D  L  E  A  A  T  L  L  L  L  D  P  L  L  L  L  Q  G  S  T  V  G  K  *  D  P  H  H  L  I  V  R  D  Q  P  P  H  L  D  R  G  V  *  S  H  M  R  I  S  V  P  V  G  Q  T  N  L  C  T  L  H  A  H  I  *  V  T  K  F  A  E  N  F  W  P  R  F  K  P  C  S  I  R  C  S  L  S  W  D  F  Q  L  N  F  I  I  L  C  F  S  K  L  A  V  R  H  *  M  F  Y  L  W  K  K  G  L  I  *  P  R  T  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5047" stop="5231"/>
                    <exon start="5345" stop="5704"/>
                    <exon start="5787" stop="5867"/>
                    <exon start="6063" stop="6417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGLVKKLSNPVKGQAVLKQQQNLEEGEVSKNAKLPNNGHGGDVQNDRTLSTNHQSDNSSRSRSTTPSPKGKPRPSGRSSRSMSPEKVPGRLGQNGASLPIESKERSLSKSPPPKATQPSRSSPVRDLSRNHSPDGTSKRVRKGRGFTDRYSFARRYRTPSPERSSYRPYYQGGRNFQGNRDRYSSYRSYSGRSPQVQYRRSPRGRSPPRYQRRSRSRSVSRSPRRESRRCRSPSRSPSPREKRQPISDRLKSRLGPRVDDQHSIPTRRSASRSRSRDSTTPRSPSAAPRKHSRKVGSASPNSSRSTSPPRPRGLVSYEDISPCGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2972" e_stop="3045"/>
            <exon e_start="3612" e_stop="3781"/>
            <exon e_start="3862" e_stop="3979"/>
            <exon e_start="4160" e_stop="4320"/>
            <exon e_start="4437" e_stop="4770"/>
            <exon e_start="4858" e_stop="4964"/>
            <exon e_start="5051" e_stop="5124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.936" e_score="0.986"/>
          <exon-intron don_prob="0.824" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.988" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="2972" e_stop="3045" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.936">
            <gDNA_intron_boundary i_start="3046" i_stop="3611" i_length="566"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="3612" e_stop="3781" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3782" i_stop="3861" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3862" e_stop="3979" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.858">
            <gDNA_intron_boundary i_start="3980" i_stop="4159" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4160" e_stop="4320" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.944">
            <gDNA_intron_boundary i_start="4321" i_stop="4436" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="4437" e_stop="4770" e_length="334"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4771" i_stop="4857" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="4858" e_stop="4964" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4965" i_stop="5050" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.932">
            <gDNA_exon_boundary e_start="5051" e_stop="5124" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2972" stop="3045"/>
              <exon start="3612" stop="3781"/>
              <exon start="3862" stop="3979"/>
              <exon start="4160" stop="4246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3891" stop="3979"/>
              <exon start="4160" stop="4320"/>
              <exon start="4437" stop="4770"/>
              <exon start="4858" stop="4865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395700" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4746" stop="4770"/>
              <exon start="4858" stop="4964"/>
              <exon start="5051" stop="5124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA : GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG : ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG : GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG : GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTG : GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAG : GTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGT</gDNA_template>
            <first_frame> E  Y  L  L  E  N  L  C  T  T  K  D  A  Y  F  T  V  *  *  K  G  L  W  H  K :   V  V  I  S  P  K  G  M  V  C  F  S  P  S  G  P  *  T  D  N  W  C  R  G  S  L  T  S  T  S  W  P  D  K  *  S  T  N  F  *  C  I  A  G  T  G  G  E  S  I  Y  G  G  K  F  P   : D  E  N  F  K  V  A  H  A  E  A  G  L  L  S  M  A  N  S  G  P  N  T  N  G  S  Q  F  F  I  I  F  K  R  T  P  H  L  D  G :   K  H  V  V  F  G  K  V  V  K  G  M  D  L  V  K  K  I  E  Q  L  G  T  D  S  G  K  P  S  G  L  V  K  I  V  D  C  G  E  L  S  E  K  K  S  N  D  T  P  K  A  E  K   : G  K  N  K  K  S  A  R  A  L  S  S  D  D  D  S  D  S  Q  E  K  G  K  S  K  S  S  T  N  R  R  K  K  K  K  R  R  Y  S  S  S  D  S  Y  S  S  E  T  D  T  D  S  S  S  D  S  D  S  D  S  K  L  D  S  Y  S  S  S  S  S  G  D  E  R  R  K  K  R  K  R  S  T  K  K  E  R  S  R  H  G  K  K  K  G  R  K  S  T  S  R  R  V  D  R  N  K  R  S  R  R  K  W :   S  S  E  S  S  S  D  T  D  S  Q  S  M  S  S  S  S  S  G  D  S  S  D  D  E  N  D  R  P  N  N  S  A  R  K   : G  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G </first_frame>
            <second_frame>  S  I  Y  W  K  T  S  A  L  Q  R  M  L  I  S  P  C  N  K  R  V  Y  G  T   : R  W  *  F  L  Q  R  E  W  Y  V  F  L  L  L  G  P  E  L  T  I  G  A  E  D  L  *  L  Q  L  L  G  Q  T  S  K  A  R  T  F  N  V  L  Q  A  L  V  E  R  V  Y  M  E  G  N  F  Q  :  M  R  T  S  K  L  P  T  R  R  L  V  F  S  Q  W  Q  I  V  V  L  I  Q  M  D  P  S  S  S  L  Y  L  R  E  L  P  I  S  T   : G  S  M  L  F  L  E  K  L  *  R  E  W  I  *  *  R  K  L  N  S  W  E  Q  T  V  G  S  H  L  G  L  *  K  L  W  I  V  A  N  C  L  R  R  K  V  M  I  H  P  K  Q  R  K  :  G  K  I  R  S  P  R  E  L  F  P  L  M  M  I  Q  T  V  K  K  R  G  K  A  N  H  P  P  I  E  G  K  R  K  R  G  D  T  L  H  L  I  L  T  V  L  R  Q  I  L  I  P  L  Q  T  L  I  Q  I  L  S  W  T  P  I  L  L  V  L  Q  V  M  K  G  V  R  R  G  R  G  Q  L  R  K  K  G  V  D  M  G  R  K  K  V  E  K  A  R  A  E  E  L  I  E  I  K  D  R  D  A  S   : G  A  L  R  V  L  V  T  Q  T  V  R  A  *  A  A  A  A  A  V  I  A  L  M  M  K  M  T  G  Q  I  I  L  H  E  K  :  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R   </second_frame>
            <third_frame>   V  S  T  G  K  P  L  H  Y  K  G  C  L  F  H  R  V  I  K  G  F  M  A  Q  :  G  G  D  F  S  K  G  N  G  M  F  F  S  F  W  A  L  N  *  Q  L  V  Q  R  I  F  N  F  N  F  L  A  R  Q  V  K  H  E  L  L  M  Y  C  R  H  W  W  R  E  Y  I  W  R  E  I  S  R :   *  E  L  Q  S  C  P  R  G  G  W  S  S  L  N  G  K  *  W  S  *  Y  K  W  I  P  V  L  H  Y  I  *  E  N  S  P  S  R  R  :  E  A  C  C  F  W  K  S  C  K  G  N  G  F  S  E  E  N  *  T  A  G  N  R  Q  W  E  A  I  W  A  C  E  N  C  G  L  W  R  T  V  *  E  E  K  *  *  Y  T  Q  S  R  E  R :   E  K  *  E  V  R  E  S  S  F  L  *  *  *  F  R  Q  S  R  K  G  E  K  Q  I  I  H  Q  *  K  E  K  E  K  E  E  I  L  F  I  *  F  L  Q  F  *  D  R  Y  *  F  L  F  R  L  *  F  R  F  *  A  G  L  L  F  F  *  F  F  R  *  *  K  A  *  E  E  E  E  V  N  *  E  R  K  E  S  T  W  E  E  K  R  *  K  K  H  E  Q  K  S  *  S  K  *  K  I  E  T  Q  V  :  E  L  *  E  F  *  *  H  R  Q  S  E  H  E  Q  Q  Q  Q  R  *  *  L  *  *  *  K  *  Q  A  K  *  F  C  T  K  R :   F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3733" stop="3781"/>
                    <exon start="3862" stop="3979"/>
                    <exon start="4160" stop="4320"/>
                    <exon start="4437" stop="4770"/>
                    <exon start="4858" stop="4964"/>
                    <exon start="5051" stop="5124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIAGTGGESIYGGKFPDENFKVAHAEAGLLSMANSGPNTNGSQFFIIFKRTPHLDGKHVVFGKVVKGMDLVKKIEQLGTDSGKPSGLVKIVDCGELSEKKSNDTPKAEKGKNKKSARALSSDDDSDSQEKGKSKSSTNRRKKKKRRYSSSDSYSSETDTDSSSDSDSDSKLDSYSSSSSGDERRKKRKRSTKKERSRHGKKKGRKSTSRRVDRNKRSRRKWSSESSSDTDSQSMSSSSSGDSSDDENDRPNNSARKGLVKKLSNPVKGQAVLKQQQNLEEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6610" PGL_stop="6276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6610" e_stop="6276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="6610" e_stop="6276" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6610" stop="6276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCTAGTTTACTGAAACACAAAATGATAAAATTGAGTTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATTTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGTGGGGAGGTTGATCTCGAACTATTAGGTGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAGCAGAAGGGGATCGAGGA</gDNA_template>
            <first_frame> T  R  L  N  E  T  L  F  P  *  V  K  H  S  M  S  N  C  *  F  T  E  T  Q  N  D  K  I  E  L  E  I  P  A  K  R  T  S  D  G  T  R  F  K  P  R  P  K  V  L  C  K  F  S  H  S  Y  M  S  M  E  G  T  E  I  S  L  S  H  R  D  *  Y  P  H  M  R  L  D  P  S  V  E  V  G  R  L  I  S  N  Y  *  V  M  R  I  L  L  S  Y  C  A  S  L  E  Q  Q  K  G  I  E   </first_frame>
            <second_frame>  R  G  *  M  R  P  F  F  H  K  *  N  I  Q  C  R  T  A  S  L  L  K  H  K  M  I  K  L  S  W  K  S  Q  L  S  E  H  L  M  E  Q  G  L  N  L  G  Q  K  F  S  A  N  L  V  T  H  I  *  A  W  R  V  Q  R  L  V  C  P  T  G  T  D  I  L  I  *  D  *  T  P  R  S  R  W  G  G  *  S  R  T  I  R  *  C  G  S  Y  F  P  T  V  L  P  W  S  S  R  R  G  S  R  </second_frame>
            <third_frame>   E  A  K  *  D  P  F  S  I  S  K  T  F  N  V  E  L  L  V  Y  *  N  T  K  *  *  N  *  V  G  N  P  S  *  A  N  I  *  W  N  K  V  *  T  *  A  K  S  S  L  Q  I  *  S  L  I  Y  E  H  G  G  Y  R  D  *  F  V  P  Q  G  L  I  S  S  Y  E  T  R  P  L  G  R  G  G  E  V  D  L  E  L  L  G  D  A  D  P  T  F  L  L  C  F  L  G  A  A  E  G  D  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9851" PGL_stop="7122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9851" e_stop="9190"/>
            <exon e_start="8485" e_stop="8179"/>
            <exon e_start="7470" e_stop="7122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9851" e_stop="9190" e_length="662"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.941">
            <gDNA_intron_boundary i_start="9189" i_stop="8486" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8485" e_stop="8179" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8178" i_stop="7471" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7470" e_stop="7122" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9851" stop="9190"/>
              <exon start="8485" stop="8346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9846" stop="9190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9846" stop="9212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9845" stop="9190"/>
              <exon start="8485" stop="8325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9841" stop="9190"/>
              <exon start="8485" stop="8330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9831" stop="9190"/>
              <exon start="8485" stop="8298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9798" stop="9190"/>
              <exon start="8485" stop="8179"/>
              <exon start="7470" stop="7122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9792" stop="9321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9786" stop="9190"/>
              <exon start="8485" stop="8179"/>
              <exon start="7470" stop="7379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9749" stop="9190"/>
              <exon start="8485" stop="8200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9744" stop="9190"/>
              <exon start="8485" stop="8214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9743" stop="9190"/>
              <exon start="8485" stop="8453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9432" stop="9190"/>
              <exon start="8485" stop="8424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9353" stop="9190"/>
              <exon start="8485" stop="8179"/>
              <exon start="7470" stop="7350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8464" stop="8179"/>
              <exon start="7470" stop="7152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8462" stop="8179"/>
              <exon start="7470" stop="7152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8333" stop="8179"/>
              <exon start="7470" stop="7129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8250" stop="8179"/>
              <exon start="7470" stop="7159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8247" stop="8179"/>
              <exon start="7470" stop="7132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8233" stop="8179"/>
              <exon start="7470" stop="7137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7436" stop="7132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG : TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG : CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</gDNA_template>
            <first_frame> *  G  L  L  I  Y  D  F  N  *  A  F  S  I  V  L  *  P  L  K  L  R  F  *  Q  F  S  F  L  A  F  A  Q  L  I  M  A  N  S  I  F  I  S  G  T  Q  S  L  S  V  C  N  R  V  S  P  N  G  L  G  F  V  G  S  D  F  N  G  N  Q  F  S  K  L  G  L  S  R  T  S  Y  K  I  K  T  L  A  P  I  C  S  I  S  T  S  R  P  A  S  Q  P  R  F  I  Q  H  K  Q  E  A  F  W  F  Y  R  F  L  S  I  V  Y  D  H  V  I  N  P  G  H  W  T  E  D  M  R  D  D  A  L  E  P  A  D  L  N  D  R  N  L  T  V  V  D  V  G  G  G  T  G  F  T  T  L  G  I  V  E  H  V  D  A  K  N  V  T  I  L  D  Q  S  P  H  Q  L  A  K  A  K  E  K  E  P  L  K  E  C  K  I  I  E  G  D  A  E  D  L  P  F  S  T  D  Y  A  D  R  Y  V  S  A  G  S :   I  E  Y  W  P  D  P  Q  R  G  I  R  E  A  Y  R  V  L  K  P  G  G  K  A  C  L  I  G  P  V  H  P  T  F  W  L  S  R  F  F  A  D  V  W  M  L  F  P  K  E  E  E  Y  I  E  W  F  E  K  A  G  F  T  D  V  Q  L  K  K  I  G  P  K  W  Y  R  G  V  R  R  H  G  L  I  M  G  C  S  V  T  G  V  K  S  T  P  G  D  S  P  L  Q  :  L  G  P  K  A  E  D  V  T  K  P  V  N  P  F  V  F  M  L  R  F  L  L  G  A  T  A  A  T  Y  Y  V  L  V  P  I  Y  M  W  V  K  D  Q  V  V  P  E  G  E  P  L  *  E  T  K  L  L  N  T  T  G  *  S  F  *  L  A  Q  L  C  I  S  L  L  C  L  E  F  S  V  N  D  I  L  A  W  S  Q  L  K  L  I  *  F  S  K  C  R  L  Y  S  F  T  I  A  L  F  G  *  L  Q  T  F  I  I  *  </first_frame>
            <second_frame>  K  G  C  *  F  M  T  S  I  R  L  F  Q  *  F  C  S  H  *  S  F  D  F  D  N  F  H  F  L  H  L  L  N  *  S  W  Q  I  Q  Y  S  S  L  E  L  K  V  *  V  F  V  T  E  F  P  Q  M  G  *  A  L  L  A  Q  I  S  M  G  I  N  F  P  S  W  V  Y  Q  E  P  V  I  K  S  K  P  *  L  Q  F  A  V  F  Q  H  L  G  Q  L  H  S  Q  D  S  S  S  T  N  K  K  L  F  G  F  I  G  F  Y  L  L  C  M  I  M  L  L  I  L  V  I  G  L  K  I  *  G  M  M  H  L  N  Q  L  I  L  M  T  G  I  *  L  W  W  M  L  V  V  A  L  V  S  L  H  W  V  *  L  S  M  *  M  P  R  M  L  Q  F  L  T  N  L  L  I  N  *  L  R  L  R  K  R  S  L  *  K  N  A  R  *  L  R  V  M  L  R  I  F  H  S  Q  L  T  M  L  I  D  M  Y  L  L  E   : V  L  N  T  G  R  T  H  N  V  E  S  E  R  H  T  E  F  *  N  L  E  E  R  R  A  *  L  V  L  C  T  L  P  F  G  C  L  V  S  L  L  M  C  G  C  S  S  L  R  R  K  N  T  *  S  G  L  R  R  Q  D  S  R  T  S  N  *  R  R  S  A  Q  N  G  I  V  E  F  E  G  M  G  L  S  W  D  V  L  L  L  V  L  S  L  H  Q  G  I  H  H  C  S :   L  A  Q  K  Q  K  M  *  Q  N  L  *  I  H  L  S  L  C  C  G  F  F  W  V  Q  R  Q  Q  H  T  M  F  W  F  L  F  T  C  G  L  K  T  R  L  F  L  K  A  N  L  C  E  R  P  S  Y  L  I  L  L  A  D  P  S  S  *  R  S  C  A  S  H  F  Y  A  *  N  F  L  *  M  T  S  *  L  G  L  N  *  S  *  Y  N  F  P  N  V  D  S  T  P  L  L  *  L  F  S  D  D  F  K  L  L  L  S  E </second_frame>
            <third_frame>   R  V  V  D  L  *  L  Q  L  G  F  F  N  S  F  V  A  I  K  A  S  I  L  T  I  F  I  S  C  I  C  S  T  N  H  G  K  F  N  I  H  L  W  N  S  K  F  E  C  L  *  Q  S  F  P  K  W  V  R  L  C  W  L  R  F  Q  W  E  S  I  F  Q  A  G  F  I  K  N  Q  L  *  N  Q  N  P  S  S  N  L  Q  Y  F  N  I  *  A  S  F  T  A  K  I  H  P  A  Q  T  R  S  F  L  V  L  *  V  F  I  Y  C  V  *  S  C  Y  *  S  W  S  L  D  *  R  Y  E  G  *  C  T  *  T  S  *  S  *  *  Q  E  F  D  C  G  G  C  W  W  W  H  W  F  H  Y  I  G  Y  S  *  A  C  R  C  Q  E  C  Y  N  S  *  P  I  S  S  S  I  S  *  G  *  G  K  G  A  F  E  R  M  Q  D  N  *  G  *  C  *  G  S  S  I  L  N  *  L  C  *  *  I  C  I  C  W  K  :  Y  *  I  L  A  G  P  T  T  W  N  P  R  G  I  Q  S  S  E  T  W  R  K  G  V  L  N  W  S  C  A  P  Y  L  L  V  V  S  F  L  C  *  C  V  D  A  L  P  *  G  G  R  I  H  R  V  V  *  E  G  R  I  H  G  R  P  T  E  E  D  R  P  K  M  V  S  W  S  S  K  A  W  A  Y  H  G  M  F  C  Y  W  C  *  V  Y  T  R  G  F  T  T  A   : A  W  P  K  S  R  R  C  D  K  T  C  K  S  I  C  L  Y  A  A  V  S  S  G  C  N  G  S  N  I  L  C  F  G  S  Y  L  H  V  G  *  R  P  G  C  S  *  R  R  T  S  V  R  D  Q  A  T  *  Y  Y  W  L  I  L  L  V  S  A  V  V  H  L  T  F  M  P  R  I  F  C  E  *  H  L  S  L  V  S  T  K  V  D  I  I  F  Q  M  *  T  L  L  L  Y  Y  S  S  F  R  M  T  S  N  F  Y  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9779" stop="9190"/>
                    <exon start="8485" stop="8179"/>
                    <exon start="7470" stop="7315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSFLAFAQLIMANSIFISGTQSLSVCNRVSPNGLGFVGSDFNGNQFSKLGLSRTSYKIKTLAPICSISTSRPASQPRFIQHKQEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNLTVVDVGGGTGFTTLGIVEHVDAKNVTILDQSPHQLAKAKEKEPLKECKIIEGDAEDLPFSTDYADRYVSAGSIEYWPDPQRGIREAYRVLKPGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFEKAGFTDVQLKKIGPKWYRGVRRHGLIMGCSVTGVKSTPGDSPLQLGPKAEDVTKPVNPFVFMLRFLLGATAATYYVLVPIYMWVKDQVVPEGEPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27414" PGL_stop="22862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27414" e_stop="27309"/>
            <exon e_start="26794" e_stop="26672"/>
            <exon e_start="23416" e_stop="22862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27414" e_stop="27309" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27308" i_stop="26795" i_length="514"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26794" e_stop="26672" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23416" e_stop="22862" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27414" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27408" stop="27309"/>
              <exon start="26794" stop="26672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27398" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27393" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27391" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27385" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27380" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27365" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27364" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27360" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27357" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27349" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27343" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27343" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27341" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27341" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27341" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27341" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27332" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27332" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="23083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27329" stop="27309"/>
              <exon start="26794" stop="26672"/>
              <exon start="23416" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26792" stop="26672"/>
              <exon start="23416" stop="22902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26710" stop="26672"/>
              <exon start="23416" stop="22886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26695" stop="26672"/>
              <exon start="23416" stop="23056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="22862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="22870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23384" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23364" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACAGATCTGACCACTCTTCTCTCTTTTTATTATCTTCTTCTCCAAAAAAAATTTATCCTTTGCTCTCTCCTCTCTCTCTCTGCTTAGCCCAAAAGTTCAAAG : ATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG : TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCTTATTGTATGTGAATGGGTTGTTT</gDNA_template>
            <first_frame> Y  Y  R  S  D  H  S  S  L  F  L  L  S  S  S  P  K  K  I  Y  P  L  L  S  P  L  S  L  C  L  A  Q  K  F  K   : D  G  G  E  R  W  *  R  I  A  S  R  K  D  N  S  C  C  C  C  S  S  Q  Q  G  E  R  Q  E  K  A  S  F  *  V  I  S  S  R  S  S   : V  S  S  G  *  N  S  P  S  T  Q  V  Q  N  R  S  P  W  T  S  W  S  H  S  S  C  L  L  C  C  Y  S  G  I  P  D  S  R  G  S  *  I  G  W  Q  C  K  Q  G  S  E  G  E  E  D  H  T  Q  A  S  A  A  G  H  S  W  R  *  G  T  *  H  P  Y  *  R  D  H  C  W  W  R  C  H  P  S  H  S  Q  I  T  H  K  Q  N  H  Q  G  V  K  Y  G  H  M  L  L  S  L  D  L  N  D  S  L  V  F  S  M  F  S  L  L  S  G  L  I  L  V  V  L  Y  F  D  L  G  T  I  S  A  S  Q  S  C  L  I  *  L  K  L  V  G  M  *  W  T  M  E  M  L  I  *  H  L  Y  R  V  A  M  Q  S  I  N  L  F  L  L  M  L  I  V  C  E  W  V  V  </first_frame>
            <second_frame>  I  T  D  L  T  T  L  L  S  F  Y  Y  L  L  L  Q  K  K  F  I  L  C  S  L  L  S  L  S  A  *  P  K  S  S  K  :  M  A  G  K  G  G  K  G  L  L  A  G  K  T  T  A  A  A  A  A  A  A  N  K  E  K  D  K  K  R  P  V  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  S  R  T  A  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  M  V  I  C  C  C  L  L  T  *  M  T  V  W  C  L  A  C  F  L  C  Y  L  V  *  Y  *  *  S  C  I  L  I  *  E  Q  F  Q  L  L  S  H  V  *  S  S  *  N  L  *  G  C  S  G  L  W  K  C  *  F  D  I  Y  I  V  L  L  C  S  Q  L  T  C  F  C  *  C  L  L  Y  V  N  G  L  F </second_frame>
            <third_frame>   L  Q  I  *  P  L  F  S  L  F  I  I  F  F  S  K  K  N  L  S  F  A  L  S  S  L  S  L  L  S  P  K  V  Q  R :   W  R  G  K  V  V  K  D  C  *  Q  E  R  Q  Q  L  L  L  L  Q  Q  P  T  R  R  K  T  R  K  G  Q  F  L  G  H  L  E  Q  V  F  S :   F  Q  W  V  E  F  T  V  N  S  S  P  E  P  Q  P  M  D  E  L  E  P  Q  Q  L  F  T  L  L  L  F  W  N  T  *  Q  Q  R  F  L  N  W  L  A  M  Q  A  R  I  *  R  *  R  G  S  H  P  G  I  C  S  W  P  F  V  E  M  R  N  L  T  P  L  L  K  G  P  L  L  V  A  V  S  S  L  T  F  T  N  H  S  *  T  K  P  P  R  S  E  I  W  S  Y  A  V  V  S  *  L  K  *  Q  F  G  V  *  H  V  F  S  V  I  W  F  D  I  S  S  P  V  F  *  F  R  N  N  F  S  F  S  V  M  F  D  L  V  K  T  C  R  D  V  V  D  Y  G  N  V  N  L  T  F  I  S  C  C  Y  A  V  N  *  P  V  S  V  D  A  Y  C  M  *  M  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27323" stop="27309"/>
                    <exon start="26794" stop="26672"/>
                    <exon start="23416" stop="23120"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSSKMAGKGGKGLLAGKTTAAAAAAANKEKDKKRPVSRSSRAGLQFPVGRIHRQLKSRTAAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26800" e_stop="26672"/>
            <exon e_start="23416" e_stop="22862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26800" e_stop="26672" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="26671" i_stop="23417" i_length="3255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23416" e_stop="22862" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26800" stop="26672"/>
              <exon start="23416" stop="23064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26797" stop="26672"/>
              <exon start="23416" stop="22885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26792" stop="26672"/>
              <exon start="23416" stop="22902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26710" stop="26672"/>
              <exon start="23416" stop="22886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26695" stop="26672"/>
              <exon start="23416" stop="23056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="22862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="22870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23384" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23364" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAAGATGGCGGGGAAAGGTGGTAAAGGATTGCTAGCAGGAAAGACAACAGCTGCTGCTGCTGCAGCAGCCAACAAGGAGAAAGACAAGAAAAGGCCAGTTTCTAGGTCATCTCGAGCAGGTCTTCAG : TTTCCAGTGGGTAGAATTCACCGTCAACTCAAGTCCAGAACCGCAGCCCATGGACGAGTTGGAGCCACAGCAGCTGTTTACTCTGCTGCTATTCTGGAATACCTGACAGCAGAGGTTCTTGAATTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGGCATCTGCAGCTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATTAAAGGGACCATTGCTGGTGGCGGTGTCATCCCTCACATTCACAAATCACTCATAAACAAAACCACCAAGGAGTGAAATATGGTCATATGCTGTTGTCTCTTGACTTAAATGACAGTTTGGTGTTTAGCATGTTTTCTCTGTTATCTGGTTTGATATTAGTAGTCCTGTATTTTGATTTAGGAACAATTTCAGCTTCTCAGTCATGTTTGATCTAGTTAAAACTTGTAGGGATGTAGTGGACTATGGAAATGTTAATTTGACATTTATATCGTGTTGCTATGCAGTCAATTAACCTGTTTCTGTTGATGCTTATTGTATGTGAATGGGTTGTTT</gDNA_template>
            <first_frame> Y  K  M  A  G  K  G  G  K  G  L  L  A  G  K  T  T  A  A  A  A  A  A  A  N  K  E  K  D  K  K  R  P  V  S  R  S  S  R  A  G  L  Q  :  F  P  V  G  R  I  H  R  Q  L  K  S  R  T  A  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  M  V  I  C  C  C  L  L  T  *  M  T  V  W  C  L  A  C  F  L  C  Y  L  V  *  Y  *  *  S  C  I  L  I  *  E  Q  F  Q  L  L  S  H  V  *  S  S  *  N  L  *  G  C  S  G  L  W  K  C  *  F  D  I  Y  I  V  L  L  C  S  Q  L  T  C  F  C  *  C  L  L  Y  V  N  G  L  F </first_frame>
            <second_frame>  I  R  W  R  G  K  V  V  K  D  C  *  Q  E  R  Q  Q  L  L  L  L  Q  Q  P  T  R  R  K  T  R  K  G  Q  F  L  G  H  L  E  Q  V  F  S :   F  Q  W  V  E  F  T  V  N  S  S  P  E  P  Q  P  M  D  E  L  E  P  Q  Q  L  F  T  L  L  L  F  W  N  T  *  Q  Q  R  F  L  N  W  L  A  M  Q  A  R  I  *  R  *  R  G  S  H  P  G  I  C  S  W  P  F  V  E  M  R  N  L  T  P  L  L  K  G  P  L  L  V  A  V  S  S  L  T  F  T  N  H  S  *  T  K  P  P  R  S  E  I  W  S  Y  A  V  V  S  *  L  K  *  Q  F  G  V  *  H  V  F  S  V  I  W  F  D  I  S  S  P  V  F  *  F  R  N  N  F  S  F  S  V  M  F  D  L  V  K  T  C  R  D  V  V  D  Y  G  N  V  N  L  T  F  I  S  C  C  Y  A  V  N  *  P  V  S  V  D  A  Y  C  M  *  M  G  C   </second_frame>
            <third_frame>   *  D  G  G  E  R  W  *  R  I  A  S  R  K  D  N  S  C  C  C  C  S  S  Q  Q  G  E  R  Q  E  K  A  S  F  *  V  I  S  S  R  S  S   : V  S  S  G  *  N  S  P  S  T  Q  V  Q  N  R  S  P  W  T  S  W  S  H  S  S  C  L  L  C  C  Y  S  G  I  P  D  S  R  G  S  *  I  G  W  Q  C  K  Q  G  S  E  G  E  E  D  H  T  Q  A  S  A  A  G  H  S  W  R  *  G  T  *  H  P  Y  *  R  D  H  C  W  W  R  C  H  P  S  H  S  Q  I  T  H  K  Q  N  H  Q  G  V  K  Y  G  H  M  L  L  S  L  D  L  N  D  S  L  V  F  S  M  F  S  L  L  S  G  L  I  L  V  V  L  Y  F  D  L  G  T  I  S  A  S  Q  S  C  L  I  *  L  K  L  V  G  M  *  W  T  M  E  M  L  I  *  H  L  Y  R  V  A  M  Q  S  I  N  L  F  L  L  M  L  I  V  C  E  W  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26800" stop="26672"/>
                    <exon start="23416" stop="23120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKMAGKGGKGLLAGKTTAAAAAAANKEKDKKRPVSRSSRAGLQFPVGRIHRQLKSRTAAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22950" PGL_stop="23419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22950" e_stop="23419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="22950" e_stop="23419" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22950" stop="23419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23017" stop="23419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23069" stop="23419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAGTCCACTACATCCCTACAAGTTTTAACTAGATCAAACATGACTGAGAAGCTGAAATTGTTCCTAAATCAAAATACAGGACTACTAATATCAAACCAGATAACAGAGAAAACATGCTAAACACCAAACTGTCATTTAAGTCAAGAGACAACAGCATATGACCATATTTCACTCCTTGGTGGTTTTGTTTATGAGTGATTTGTGAATGTGAGGGATGACACCGCCACCAGCAATGGTCCCTTTAATAAGGGTGTCAAGTTCCTCATCTCCACGAATGGCCAGCTGCAGATGCCTGGGTGTGATCCTCTTCACCTTCAGATCCTTGCTTGCATTGCCAGCCAATTCAAGAACCTCTGCTGTCAGGTATTCCAGAATAGCAGCAGAGTAAACAGCTGCTGTGGCTCCAACTCGTCCATGGGCTGCGGTTCTGGACTTGAGTTGACGGTGAATTCTACCCACTGGAAACTA</gDNA_template>
            <first_frame> H  S  P  L  H  P  Y  K  F  *  L  D  Q  T  *  L  R  S  *  N  C  S  *  I  K  I  Q  D  Y  *  Y  Q  T  R  *  Q  R  K  H  A  K  H  Q  T  V  I  *  V  K  R  Q  Q  H  M  T  I  F  H  S  L  V  V  L  F  M  S  D  L  *  M  *  G  M  T  P  P  P  A  M  V  P  L  I  R  V  S  S  S  S  S  P  R  M  A  S  C  R  C  L  G  V  I  L  F  T  F  R  S  L  L  A  L  P  A  N  S  R  T  S  A  V  R  Y  S  R  I  A  A  E  *  T  A  A  V  A  P  T  R  P  W  A  A  V  L  D  L  S  *  R  *  I  L  P  T  G  N   </first_frame>
            <second_frame>  I  V  H  Y  I  P  T  S  F  N  *  I  K  H  D  *  E  A  E  I  V  P  K  S  K  Y  R  T  T  N  I  K  P  D  N  R  E  N  M  L  N  T  K  L  S  F  K  S  R  D  N  S  I  *  P  Y  F  T  P  W  W  F  C  L  *  V  I  C  E  C  E  G  *  H  R  H  Q  Q  W  S  L  *  *  G  C  Q  V  P  H  L  H  E  W  P  A  A  D  A  W  V  *  S  S  S  P  S  D  P  C  L  H  C  Q  P  I  Q  E  P  L  L  S  G  I  P  E  *  Q  Q  S  K  Q  L  L  W  L  Q  L  V  H  G  L  R  F  W  T  *  V  D  G  E  F  Y  P  L  E  T  </second_frame>
            <third_frame>   *  S  T  T  S  L  Q  V  L  T  R  S  N  M  T  E  K  L  K  L  F  L  N  Q  N  T  G  L  L  I  S  N  Q  I  T  E  K  T  C  *  T  P  N  C  H  L  S  Q  E  T  T  A  Y  D  H  I  S  L  L  G  G  F  V  Y  E  *  F  V  N  V  R  D  D  T  A  T  S  N  G  P  F  N  K  G  V  K  F  L  I  S  T  N  G  Q  L  Q  M  P  G  C  D  P  L  H  L  Q  I  L  A  C  I  A  S  Q  F  K  N  L  C  C  Q  V  F  Q  N  S  S  R  V  N  S  C  C  G  S  N  S  S  M  G  C  G  S  G  L  E  L  T  V  N  S  T  H  W  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23150" stop="23419"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVNVRDDTATSNGPFNKGVKFLISTNGQLQMPGCDPLHLQILACIASQFKNLCCQVFQNSSRVNSCCGSNSSMGCGSGLELTVNSTHWKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32904" PGL_stop="33951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32904" e_stop="33689"/>
            <exon e_start="33915" e_stop="33951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.949" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32904" e_stop="33689" e_length="786"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.949">
            <gDNA_intron_boundary i_start="33690" i_stop="33914" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33915" e_stop="33951" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32904" stop="33689"/>
              <exon start="33915" stop="33951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32967" stop="33496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCACTAATACTCTACACTCTCAACCCACACCTTTATTGCCCTTTCTCTCTCTAGGATTTTTATGTTATCTTCATCGGTCATATCGCCGGAAATGATTATTCAGGCAATCGATTTTGTTAGTATTGAGTGTCGGTGTGATGATGTCATGTCGTGTGTCCGTCGGAAAATCGGCGAGTTTTAGCCGTCGTCTCGTGTTTGTTGTACCTTAAGCGAAAGATAAAGACTTTCTAGGTTTAGCAGTGTTTTCAAGTTATTCCATGCTAATTTTCTACTCAAAATAATGGTTTTTTGACGGTGTGAAAAGGTAATTTGAAATCGATTCCTGTTTGAAATTTAGGAAGATTGTGAACTTGAATTTTTTAGTGTAAGAATTTGTGGTTATGCCTTTTCCTATGAAGATTCAACCTGTTGACTTCAGTACTGTGGAAGAATCGAGTCGATGTGACTCGTTTAAGCCGGTTCCGAAGTCACGGTTCAAGCGGCTATTTGAGAGGCAATTTTCAGGGCTATTGAGATCATCGGCGCCGGAGAAGCTGGTTACCGGTGAGGATTTGATTGGGAATAAGAAGGATGCGTCTGAAGAACTGGAGCCTAGTTCTGTTTGTTTGGCTAAAATGGTGCAGACTTTTATTGAGGAAGGTGAGGATAAGCATCGGTGCAATCGAAGCCGATGCAGTTGCTTTAATTGTAATGGAACTGAAAGCTCAGAGGAGGAGAATGATTCAGTCAATTGCTTCGGTGAATCAAATCAAAATTGCTCTAGCGATGCTTGTGAAATTCTCAAG : AGTGTGGTGTCTTGTCCTTCTGTCCTTGAAAGGAACG</gDNA_template>
            <first_frame> R  T  N  T  L  H  S  Q  P  T  P  L  L  P  F  L  S  L  G  F  L  C  Y  L  H  R  S  Y  R  R  K  *  L  F  R  Q  S  I  L  L  V  L  S  V  G  V  M  M  S  C  R  V  S  V  G  K  S  A  S  F  S  R  R  L  V  F  V  V  P  *  A  K  D  K  D  F  L  G  L  A  V  F  S  S  Y  S  M  L  I  F  Y  S  K  *  W  F  F  D  G  V  K  R  *  F  E  I  D  S  C  L  K  F  R  K  I  V  N  L  N  F  L  V  *  E  F  V  V  M  P  F  P  M  K  I  Q  P  V  D  F  S  T  V  E  E  S  S  R  C  D  S  F  K  P  V  P  K  S  R  F  K  R  L  F  E  R  Q  F  S  G  L  L  R  S  S  A  P  E  K  L  V  T  G  E  D  L  I  G  N  K  K  D  A  S  E  E  L  E  P  S  S  V  C  L  A  K  M  V  Q  T  F  I  E  E  G  E  D  K  H  R  C  N  R  S  R  C  S  C  F  N  C  N  G  T  E  S  S  E  E  E  N  D  S  V  N  C  F  G  E  S  N  Q  N  C  S  S  D  A  C  E  I  L  K  :  S  V  V  S  C  P  S  V  L  E  R  N  </first_frame>
            <second_frame>  A  L  I  L  Y  T  L  N  P  H  L  Y  C  P  F  S  L  *  D  F  Y  V  I  F  I  G  H  I  A  G  N  D  Y  S  G  N  R  F  C  *  Y  *  V  S  V  *  *  C  H  V  V  C  P  S  E  N  R  R  V  L  A  V  V  S  C  L  L  Y  L  K  R  K  I  K  T  F  *  V  *  Q  C  F  Q  V  I  P  C  *  F  S  T  Q  N  N  G  F  L  T  V  *  K  G  N  L  K  S  I  P  V  *  N  L  G  R  L  *  T  *  I  F  *  C  K  N  L  W  L  C  L  F  L  *  R  F  N  L  L  T  S  V  L  W  K  N  R  V  D  V  T  R  L  S  R  F  R  S  H  G  S  S  G  Y  L  R  G  N  F  Q  G  Y  *  D  H  R  R  R  R  S  W  L  P  V  R  I  *  L  G  I  R  R  M  R  L  K  N  W  S  L  V  L  F  V  W  L  K  W  C  R  L  L  L  R  K  V  R  I  S  I  G  A  I  E  A  D  A  V  A  L  I  V  M  E  L  K  A  Q  R  R  R  M  I  Q  S  I  A  S  V  N  Q  I  K  I  A  L  A  M  L  V  K  F  S  R :   V  W  C  L  V  L  L  S  L  K  G  T </second_frame>
            <third_frame>   H  *  Y  S  T  L  S  T  H  T  F  I  A  L  S  L  S  R  I  F  M  L  S  S  S  V  I  S  P  E  M  I  I  Q  A  I  D  F  V  S  I  E  C  R  C  D  D  V  M  S  C  V  R  R  K  I  G  E  F  *  P  S  S  R  V  C  C  T  L  S  E  R  *  R  L  S  R  F  S  S  V  F  K  L  F  H  A  N  F  L  L  K  I  M  V  F  *  R  C  E  K  V  I  *  N  R  F  L  F  E  I  *  E  D  C  E  L  E  F  F  S  V  R  I  C  G  Y  A  F  S  Y  E  D  S  T  C  *  L  Q  Y  C  G  R  I  E  S  M  *  L  V  *  A  G  S  E  V  T  V  Q  A  A  I  *  E  A  I  F  R  A  I  E  I  I  G  A  G  E  A  G  Y  R  *  G  F  D  W  E  *  E  G  C  V  *  R  T  G  A  *  F  C  L  F  G  *  N  G  A  D  F  Y  *  G  R  *  G  *  A  S  V  Q  S  K  P  M  Q  L  L  *  L  *  W  N  *  K  L  R  G  G  E  *  F  S  Q  L  L  R  *  I  K  S  K  L  L  *  R  C  L  *  N  S  Q   : E  C  G  V  L  S  F  C  P  *  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33273" stop="33689"/>
                    <exon start="33915" stop="33950"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFVVMPFPMKIQPVDFSTVEESSRCDSFKPVPKSRFKRLFERQFSGLLRSSAPEKLVTGEDLIGNKKDASEELEPSSVCLAKMVQTFIEEGEDKHRCNRSRCSCFNCNGTESSEEENDSVNCFGESNQNCSSDACEILKSVVSCPSVLERN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34930" PGL_stop="35756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34930" e_stop="35756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="34930" e_stop="35756" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34930" stop="35463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34951" stop="35711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35204" stop="35756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAGTTCTAATGCCAATAGCATCAAACTCTACTTCTGAACCTGGCACTGCTTGTAAAACCACAAAAGAAGCCATAAAGGAAGAGACTTCAGAGGTTTTTCGCGGTGAGATGAATCTGGTTTTTGGAGGAAAGAGCAGTCCTTTGGCGGATAATAACCCCAAGAGTGCGGGTACGTCTCCTCTATTTGCTTGTGATGATGAAAAGAACCTGGCGGTGAAGCTAGGTGATATTTTTGAAGGAAAAAGCAGTCCTTTGGCAGAGAACAACACCAAGAGAGCGAGTACATCATCTCTATTTGCTTGTGACATTGAAAAGAACGCTATGGCAGCGCAGCTAGGTGAACCACTAGAAATCAAACCCAAGGATTCAAGCAATTGTGCCAGGAAGATGACTGGTTTAACCTCTCTGATTGAAGACCACACCTAAAATTTTGACCTATTTCCTAACCTTTTTGTCAACTGTTGTTTGCTTTTTATATGTTTTGAGCTGAAACCCCCCGTGTGTTTTAGCATTTGGGGCCTTATTTGAAACTACGGACCAACTGCCTACTGGTTTATCTCGGCGGTCTCCCTTCACATTTTATAGTAAGGGTCTATGAGTCCATGTCACTAATACAAACTTACTTAGTATCAAGAGACTAGTAAAGGAGAACTGGTAATTGTGTTGTCAGTTCAGTTCTTTGATATTTTTCAACAGAAGTGTTTTGCATAAGTGTTTATCGTAGCAAACACTTGTTAGCTTGTACTATGTTTTACTGATATGATGATAATAAAGTCTGGGACTATTGCTGTGTAAGTTCCTGTTTATGTACATTGTGAGTCCTCA</gDNA_template>
            <first_frame> H  Q  F  *  C  Q  *  H  Q  T  L  L  L  N  L  A  L  L  V  K  P  Q  K  K  P  *  R  K  R  L  Q  R  F  F  A  V  R  *  I  W  F  L  E  E  R  A  V  L  W  R  I  I  T  P  R  V  R  V  R  L  L  Y  L  L  V  M  M  K  R  T  W  R  *  S  *  V  I  F  L  K  E  K  A  V  L  W  Q  R  T  T  P  R  E  R  V  H  H  L  Y  L  L  V  T  L  K  R  T  L  W  Q  R  S  *  V  N  H  *  K  S  N  P  R  I  Q  A  I  V  P  G  R  *  L  V  *  P  L  *  L  K  T  T  P  K  I  L  T  Y  F  L  T  F  L  S  T  V  V  C  F  L  Y  V  L  S  *  N  P  P  C  V  L  A  F  G  A  L  F  E  T  T  D  Q  L  P  T  G  L  S  R  R  S  P  F  T  F  Y  S  K  G  L  *  V  H  V  T  N  T  N  L  L  S  I  K  R  L  V  K  E  N  W  *  L  C  C  Q  F  S  S  L  I  F  F  N  R  S  V  L  H  K  C  L  S  *  Q  T  L  V  S  L  Y  Y  V  L  L  I  *  *  *  *  S  L  G  L  L  L  C  K  F  L  F  M  Y  I  V  S  P   </first_frame>
            <second_frame>  T  S  S  N  A  N  S  I  K  L  Y  F  *  T  W  H  C  L  *  N  H  K  R  S  H  K  G  R  D  F  R  G  F  S  R  *  D  E  S  G  F  W  R  K  E  Q  S  F  G  G  *  *  P  Q  E  C  G  Y  V  S  S  I  C  L  *  *  *  K  E  P  G  G  E  A  R  *  Y  F  *  R  K  K  Q  S  F  G  R  E  Q  H  Q  E  S  E  Y  I  I  S  I  C  L  *  H  *  K  E  R  Y  G  S  A  A  R  *  T  T  R  N  Q  T  Q  G  F  K  Q  L  C  Q  E  D  D  W  F  N  L  S  D  *  R  P  H  L  K  F  *  P  I  S  *  P  F  C  Q  L  L  F  A  F  Y  M  F  *  A  E  T  P  R  V  F  *  H  L  G  P  Y  L  K  L  R  T  N  C  L  L  V  Y  L  G  G  L  P  S  H  F  I  V  R  V  Y  E  S  M  S  L  I  Q  T  Y  L  V  S  R  D  *  *  R  R  T  G  N  C  V  V  S  S  V  L  *  Y  F  S  T  E  V  F  C  I  S  V  Y  R  S  K  H  L  L  A  C  T  M  F  Y  *  Y  D  D  N  K  V  W  D  Y  C  C  V  S  S  C  L  C  T  L  *  V  L  </second_frame>
            <third_frame>   P  V  L  M  P  I  A  S  N  S  T  S  E  P  G  T  A  C  K  T  T  K  E  A  I  K  E  E  T  S  E  V  F  R  G  E  M  N  L  V  F  G  G  K  S  S  P  L  A  D  N  N  P  K  S  A  G  T  S  P  L  F  A  C  D  D  E  K  N  L  A  V  K  L  G  D  I  F  E  G  K  S  S  P  L  A  E  N  N  T  K  R  A  S  T  S  S  L  F  A  C  D  I  E  K  N  A  M  A  A  Q  L  G  E  P  L  E  I  K  P  K  D  S  S  N  C  A  R  K  M  T  G  L  T  S  L  I  E  D  H  T  *  N  F  D  L  F  P  N  L  F  V  N  C  C  L  L  F  I  C  F  E  L  K  P  P  V  C  F  S  I  W  G  L  I  *  N  Y  G  P  T  A  Y  W  F  I  S  A  V  S  L  H  I  L  *  *  G  S  M  S  P  C  H  *  Y  K  L  T  *  Y  Q  E  T  S  K  G  E  L  V  I  V  L  S  V  Q  F  F  D  I  F  Q  Q  K  C  F  A  *  V  F  I  V  A  N  T  C  *  L  V  L  C  F  T  D  M  M  I  I  K  S  G  T  I  A  V  *  V  P  V  Y  V  H  C  E  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34932" stop="35357"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLMPIASNSTSEPGTACKTTKEAIKEETSEVFRGEMNLVFGGKSSPLADNNPKSAGTSPLFACDDEKNLAVKLGDIFEGKSSPLAENNTKRASTSSLFACDIEKNAMAAQLGEPLEIKPKDSSNCARKMTGLTSLIEDHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37900" PGL_stop="35278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37900" e_stop="37876"/>
            <exon e_start="36885" e_stop="36877"/>
            <exon e_start="35765" e_stop="35278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.680"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.778"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.680">
            <gDNA_exon_boundary e_start="37900" e_stop="37876" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37875" i_stop="36886" i_length="990"/>
          </intron>
          <exon e_serial="2" e_score="0.778">
            <gDNA_exon_boundary e_start="36885" e_stop="36877" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36876" i_stop="35766" i_length="1111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35765" e_stop="35278" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37876"/>
              <exon start="36885" stop="36877"/>
              <exon start="35765" stop="35278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712854" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTTGAAATTATTATTTTTT : TATTTTTAA : CCAAAAAACTGAGGACTCACAATGTACATAAACAGGAACTTACACAGCAATAGTCCCAGACTTTATTATCATCATATCAGTAAAACATAGTACAAGCTAACAAGTGTTTGCTACGATAAACACTTATGCAAAACACTTCTGTTGAAAAATATCAAAGAACTGAACTGACAACACAATTACCAGTTCTCCTTTACTAGTCTCTTGATACTAAGTAAGTTTGTATTAGTGACATGGACTCATAGACCCTTACTATAAAATGTGAAGGGAGACCGCCGAGATAAACCAGTAGGCAGTTGGTCCGTAGTTTCAAATAAGGCCCCAAATGCTAAAACACACGGGGGGTTTCAGCTCAAAACATATAAAAAGCAAACAACAGTTGACAAAAAGGTTAGGAAATAGGTCAAAATTTTAGGTGTGGTCTTCAATCAGAGAGGTTAAACCAGTCATCTTCCTGGCACAATTGCTTGAATCCTTGGGTTTGATTTCTA</gDNA_template>
            <first_frame> F  Y  L  E  I  I  I  F   : L  F  L   : T  K  K  L  R  T  H  N  V  H  K  Q  E  L  T  Q  Q  *  S  Q  T  L  L  S  S  Y  Q  *  N  I  V  Q  A  N  K  C  L  L  R  *  T  L  M  Q  N  T  S  V  E  K  Y  Q  R  T  E  L  T  T  Q  L  P  V  L  L  Y  *  S  L  D  T  K  *  V  C  I  S  D  M  D  S  *  T  L  T  I  K  C  E  G  R  P  P  R  *  T  S  R  Q  L  V  R  S  F  K  *  G  P  K  C  *  N  T  R  G  V  S  A  Q  N  I  *  K  A  N  N  S  *  Q  K  G  *  E  I  G  Q  N  F  R  C  G  L  Q  S  E  R  L  N  Q  S  S  S  W  H  N  C  L  N  P  W  V  *  F  L </first_frame>
            <second_frame>  F  I  L  K  L  L  F  F  :  Y  F  *  :  P  K  N  *  G  L  T  M  Y  I  N  R  N  L  H  S  N  S  P  R  L  Y  Y  H  H  I  S  K  T  *  Y  K  L  T  S  V  C  Y  D  K  H  L  C  K  T  L  L  L  K  N  I  K  E  L  N  *  Q  H  N  Y  Q  F  S  F  T  S  L  L  I  L  S  K  F  V  L  V  T  W  T  H  R  P  L  L  *  N  V  K  G  D  R  R  D  K  P  V  G  S  W  S  V  V  S  N  K  A  P  N  A  K  T  H  G  G  F  Q  L  K  T  Y  K  K  Q  T  T  V  D  K  K  V  R  K  *  V  K  I  L  G  V  V  F  N  Q  R  G  *  T  S  H  L  P  G  T  I  A  *  I  L  G  F  D  F   </second_frame>
            <third_frame>   L  S  *  N  Y  Y  F  F :   I  F  N :   Q  K  T  E  D  S  Q  C  T  *  T  G  T  Y  T  A  I  V  P  D  F  I  I  I  I  S  V  K  H  S  T  S  *  Q  V  F  A  T  I  N  T  Y  A  K  H  F  C  *  K  I  S  K  N  *  T  D  N  T  I  T  S  S  P  L  L  V  S  *  Y  *  V  S  L  Y  *  *  H  G  L  I  D  P  Y  Y  K  M  *  R  E  T  A  E  I  N  Q  *  A  V  G  P  *  F  Q  I  R  P  Q  M  L  K  H  T  G  G  F  S  S  K  H  I  K  S  K  Q  Q  L  T  K  R  L  G  N  R  S  K  F  *  V  W  S  S  I  R  E  V  K  P  V  I  F  L  A  Q  L  L  E  S  L  G  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="41307" PGL_stop="41992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41307" e_stop="41600"/>
            <exon e_start="41676" e_stop="41992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="41307" e_stop="41600" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41601" i_stop="41675" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="41676" e_stop="41992" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41307" stop="41600"/>
              <exon start="41676" stop="41901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="41992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTATCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTTCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATAATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  I  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  S  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  F  P  N  E  Y  N  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  *  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  F  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  I  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  R  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  Y  H  V  S  T  P  G  *  Y  M  D  R  V  P  R  F  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="42046" PGL_stop="42247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42046" e_stop="42247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="42046" e_stop="42247" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42046" stop="42247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</gDNA_template>
            <first_frame> S  S  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  V  M  T  S  R  F  W  G  *  *  *  L  L  </first_frame>
            <second_frame>  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  W  *  *  L  P  D  F  G  D  N  N  S  Y  * </second_frame>
            <third_frame>   V  T  P  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  F  R  I  L  L  V  *  *  F  D  H  R  C  S  C  G  D  D  F  Q  I  L  G  I  I  I  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="55204" PGL_stop="54996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55204" e_stop="54996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="55204" e_stop="54996" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55204" stop="54996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCTGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAAATGTTGTTGAGTTTTAAAA</gDNA_template>
            <first_frame> S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  L  A  W  T  S  F  L  C  I  L  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  N  V  V  E  F  *   </first_frame>
            <second_frame>  H  Y  S  G  F  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  W  H  G  L  A  F  Y  V  F  *  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  M  L  L  S  F  K  </second_frame>
            <third_frame>   I  T  P  D  F  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  F  G  D  N  K  C  C  *  V  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="56097" PGL_stop="55258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56097" e_stop="55882"/>
            <exon e_start="55653" e_stop="55258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.931"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="56097" e_stop="55882" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55881" i_stop="55654" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="55653" e_stop="55258" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56097" stop="55882"/>
              <exon start="55653" stop="55349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55493" stop="55258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTAGTATAAAAGAAGGCTTGATGAACACAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAG : GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCATTCTAATTAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCTGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTGTATGTTTTCTTTTTGATTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  S  I  K  E  G  L  M  N  T  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  :  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  I  L  K  D  V  N  I  L  I  L  I  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  L  M  I  S  T  Q  Y  L  C  F  V  L  T  P  T  C  M  F  S  F  *  L  F  V </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  Q  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  F  D  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  E  E  R  S  V  T  Y  R  H  E  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  F  *  L  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  *  *  Y  L  L  S  T  C  V  L  Y  *  P  L  L  V  C  F  L  F  D  Y  L   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  *  Y  K  R  R  L  D  E  H  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  S  T  P   : G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  T  H  S  N  *  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  L  Y  V  F  F  L  I  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0135N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="63121" PGL_stop="62593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63121" e_stop="62593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="63121" e_stop="62593" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63121" stop="62593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCTCTGCTCAATAGAATTGGCACCATGGAGTTGTTACACCCTAGCAACCTCTTTCCCATTTTTGTGCCATCTTTAATACTAGTATTATTTTGGTGCAAAATCATGAGGCGTCAAAGAGTTTTCCTAGTAGATTTTGCATGTTACAGACCCCCAAAAGATCAACAAATTTGTAGACAAACCTTTATTGAAAAATCTTCTAGAAGTTTAAATTCTAACAAAAACACATTAGAGTTCATGGACAGGATCTTGCAACGAGTAGGTTTAGGTGAGAAAACGTACCTTTCTAAAGGTTTGTTAAAAGAACCTCCAGATATGAGCGCGAAAGCGGCTAAGGAAGAAGTGGAGATGGCAATATTCGGATCCATAGATGAGCTTTTACTGAAAACTGGAGTACAATGTGAAGATATTGACATATTGGTTACTGTTTGTGGCGTATACAATATTATGCCATCTTTGTCTAGTGTCATAGTGAAGCGTTACAACCTTAGACATGATATACATACATATAATATTACTGGAATGGGATG</gDNA_template>
            <first_frame> *  L  C  S  I  E  L  A  P  W  S  C  Y  T  L  A  T  S  F  P  F  L  C  H  L  *  Y  *  Y  Y  F  G  A  K  S  *  G  V  K  E  F  S  *  *  I  L  H  V  T  D  P  Q  K  I  N  K  F  V  D  K  P  L  L  K  N  L  L  E  V  *  I  L  T  K  T  H  *  S  S  W  T  G  S  C  N  E  *  V  *  V  R  K  R  T  F  L  K  V  C  *  K  N  L  Q  I  *  A  R  K  R  L  R  K  K  W  R  W  Q  Y  S  D  P  *  M  S  F  Y  *  K  L  E  Y  N  V  K  I  L  T  Y  W  L  L  F  V  A  Y  T  I  L  C  H  L  C  L  V  S  *  *  S  V  T  T  L  D  M  I  Y  I  H  I  I  L  L  E  W  D  </first_frame>
            <second_frame>  S  S  A  Q  *  N  W  H  H  G  V  V  T  P  *  Q  P  L  S  H  F  C  A  I  F  N  T  S  I  I  L  V  Q  N  H  E  A  S  K  S  F  P  S  R  F  C  M  L  Q  T  P  K  R  S  T  N  L  *  T  N  L  Y  *  K  I  F  *  K  F  K  F  *  Q  K  H  I  R  V  H  G  Q  D  L  A  T  S  R  F  R  *  E  N  V  P  F  *  R  F  V  K  R  T  S  R  Y  E  R  E  S  G  *  G  R  S  G  D  G  N  I  R  I  H  R  *  A  F  T  E  N  W  S  T  M  *  R  Y  *  H  I  G  Y  C  L  W  R  I  Q  Y  Y  A  I  F  V  *  C  H  S  E  A  L  Q  P  *  T  *  Y  T  Y  I  *  Y  Y  W  N  G  M </second_frame>
            <third_frame>   A  L  L  N  R  I  G  T  M  E  L  L  H  P  S  N  L  F  P  I  F  V  P  S  L  I  L  V  L  F  W  C  K  I  M  R  R  Q  R  V  F  L  V  D  F  A  C  Y  R  P  P  K  D  Q  Q  I  C  R  Q  T  F  I  E  K  S  S  R  S  L  N  S  N  K  N  T  L  E  F  M  D  R  I  L  Q  R  V  G  L  G  E  K  T  Y  L  S  K  G  L  L  K  E  P  P  D  M  S  A  K  A  A  K  E  E  V  E  M  A  I  F  G  S  I  D  E  L  L  L  K  T  G  V  Q  C  E  D  I  D  I  L  V  T  V  C  G  V  Y  N  I  M  P  S  L  S  S  V  I  V  K  R  Y  N  L  R  H  D  I  H  T  Y  N  I  T  G  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63119" stop="62595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLNRIGTMELLHPSNLFPIFVPSLILVLFWCKIMRRQRVFLVDFACYRPPKDQQICRQTFIEKSSRSLNSNKNTLEFMDRILQRVGLGEKTYLSKGLLKEPPDMSAKAAKEEVEMAIFGSIDELLLKTGVQCEDIDILVTVCGVYNIMPSLSSVIVKRYNLRHDIHTYNITGMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="79711" PGL_stop="82128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79711" e_stop="79883"/>
            <exon e_start="79956" e_stop="80168"/>
            <exon e_start="81987" e_stop="82128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79711" e_stop="79883" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79884" i_stop="79955" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79956" e_stop="80168" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80169" i_stop="81986" i_length="1818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81987" e_stop="82128" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79711" stop="79883"/>
              <exon start="79956" stop="80168"/>
              <exon start="81987" stop="82128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTCTACAATGAGAGGATGGCTAAGTTGGTTTTGCCAATGCCTGGGGAGTCTTTGCAAAAGGCTCATGTAGAGAACAGACAGGCAGCGATGAATGTCTTTGATGAACAGCATTTTGGTCGTCATCATGCAAAAAAATCAGTTGATAAATTGGATGAAGAGATCGAAAAG : GTGTACAAGAATATAATGCTGGCGAATGAATATCAATCCTCAAAGCTGTGTGAGGCTTTGTATACTAGATGTGAGGACAAAATGGACAATCTTCAGGTCCTCAGACTTCCTTCGATGGCAAAGTTCAATGCTGGCTTCATCCAGTGTAACCAAAGCTTTCATGGTGAATGTGTCGGACCTTCTAAAATCAACTATGAGAAGCGGATGATGAAG : ATGTTAGAGAAGTCAAAGTCTTCATTCATCAAGGACTATAATCACAGACTCTTTAATTGGTTGGTGGCTTTCTCACTGTTCATGGTGGTGGTCGGGCGGTTCGTCATAAAGTTTATTTTGGTCGAGATTGGCGCATGGATAC</gDNA_template>
            <first_frame> *  N  S  T  M  R  G  W  L  S  W  F  C  Q  C  L  G  S  L  C  K  R  L  M  *  R  T  D  R  Q  R  *  M  S  L  M  N  S  I  L  V  V  I  M  Q  K  N  Q  L  I  N  W  M  K  R  S  K  R :   C  T  R  I  *  C  W  R  M  N  I  N  P  Q  S  C  V  R  L  C  I  L  D  V  R  T  K  W  T  I  F  R  S  S  D  F  L  R  W  Q  S  S  M  L  A  S  S  S  V  T  K  A  F  M  V  N  V  S  D  L  L  K  S  T  M  R  S  G  *  *  R :   C  *  R  S  Q  S  L  H  S  S  R  T  I  I  T  D  S  L  I  G  W  W  L  S  H  C  S  W  W  W  S  G  G  S  S  *  S  L  F  W  S  R  L  A  H  G  Y </first_frame>
            <second_frame>  K  T  L  Q  *  E  D  G  *  V  G  F  A  N  A  W  G  V  F  A  K  G  S  C  R  E  Q  T  G  S  D  E  C  L  *  *  T  A  F  W  S  S  S  C  K  K  I  S  *  *  I  G  *  R  D  R  K   : G  V  Q  E  Y  N  A  G  E  *  I  S  I  L  K  A  V  *  G  F  V  Y  *  M  *  G  Q  N  G  Q  S  S  G  P  Q  T  S  F  D  G  K  V  Q  C  W  L  H  P  V  *  P  K  L  S  W  *  M  C  R  T  F  *  N  Q  L  *  E  A  D  D  E   : D  V  R  E  V  K  V  F  I  H  Q  G  L  *  S  Q  T  L  *  L  V  G  G  F  L  T  V  H  G  G  G  R  A  V  R  H  K  V  Y  F  G  R  D  W  R  M  D   </second_frame>
            <third_frame>   K  L  Y  N  E  R  M  A  K  L  V  L  P  M  P  G  E  S  L  Q  K  A  H  V  E  N  R  Q  A  A  M  N  V  F  D  E  Q  H  F  G  R  H  H  A  K  K  S  V  D  K  L  D  E  E  I  E  K  :  V  Y  K  N  I  M  L  A  N  E  Y  Q  S  S  K  L  C  E  A  L  Y  T  R  C  E  D  K  M  D  N  L  Q  V  L  R  L  P  S  M  A  K  F  N  A  G  F  I  Q  C  N  Q  S  F  H  G  E  C  V  G  P  S  K  I  N  Y  E  K  R  M  M  K  :  M  L  E  K  S  K  S  S  F  I  K  D  Y  N  H  R  L  F  N  W  L  V  A  F  S  L  F  M  V  V  V  G  R  F  V  I  K  F  I  L  V  E  I  G  A  W  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79713" stop="79883"/>
                    <exon start="79956" stop="80168"/>
                    <exon start="81987" stop="82127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLYNERMAKLVLPMPGESLQKAHVENRQAAMNVFDEQHFGRHHAKKSVDKLDEEIEKVYKNIMLANEYQSSKLCEALYTRCEDKMDNLQVLRLPSMAKFNAGFIQCNQSFHGECVGPSKINYEKRMMKMLEKSKSSFIKDYNHRLFNWLVAFSLFMVVVGRFVIKFILVEIGAWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86264" PGL_stop="90802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86264" e_stop="86929"/>
            <exon e_start="87662" e_stop="87769"/>
            <exon e_start="88219" e_stop="88284"/>
            <exon e_start="89436" e_stop="89501"/>
            <exon e_start="90188" e_stop="90265"/>
            <exon e_start="90364" e_stop="90802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86264" e_stop="86929" e_length="666"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86930" i_stop="87661" i_length="732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87662" e_stop="87769" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87770" i_stop="88218" i_length="449"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88219" e_stop="88284" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88285" i_stop="89435" i_length="1151"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89436" e_stop="89501" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89502" i_stop="90187" i_length="686"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90188" e_stop="90265" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90266" i_stop="90363" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90364" e_stop="90802" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86264" stop="86755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86271" stop="86929"/>
              <exon start="87662" stop="87706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86271" stop="86757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86889" stop="86929"/>
              <exon start="87662" stop="87769"/>
              <exon start="88219" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87664" stop="87769"/>
              <exon start="88219" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376049" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87751" stop="87769"/>
              <exon start="88219" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88224" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88231" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396510" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88243" stop="88284"/>
              <exon start="89436" stop="89501"/>
              <exon start="90188" stop="90265"/>
              <exon start="90364" stop="90802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90368" stop="90784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90369" stop="90792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAGCAAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGTTGGTTTAGGTGGTGGGGGGTTCCATGGTCATGGTGGGGGTGGTTCTTTTCCTTTAGGGTTGAGTTTAGAACAAGGGAAAGGTGGGTTCTTGAAGATGGATGATGTTTCAGCACCTGGAAGGAGGTTTAGAGATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCT : GGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGG : TTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAG : ACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAG : GTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAG : GAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGTTTTGTTCTTCGATACTTG</gDNA_template>
            <first_frame> F  K  Q  S  F  R  *  L  P  F  L  Y  F  L  H  G  S  H  C  S  L  E  S  S  K  T  H  T  Q  T  T  Q  N  T  H  F  H  F  H  F  L  P  I  Y  I  Y  I  Y  V  T  S  T  C  *  S  T  N  L  Y  T  L  L  S  I  P  L  *  R  T  L  F  *  L  V  F  V  Q  L  N  A  F  L  R  N  *  G  G  R  K  Q  L  R  S  K  K  D  *  I  F  I  V  S  A  M  A  N  N  P  S  E  G  P  S  D  D  F  F  D  Q  I  L  G  F  P  A  Y  N  G  A  E  P  N  L  A  G  N  D  A  G  A  I  P  P  A  M  M  L  Q  L  N  S  G  D  G  S  S  Q  F  T  G  V  G  L  G  V  G  L  G  G  G  G  F  H  G  H  G  G  G  G  S  F  P  L  G  L  S  L  E  Q  G  K  G  G  F  L  K  M  D  D  V  S  A  P  G  R  R  F  R  D  D  V  V  D  S  R  A  S  S  S  V  K  P  :  G  F  H  G  Q  P  M  P  S  M  P  H  P  P  A  I  R  P  R  V  R  A  R  R  G  Q  A  T  D  P  H  S  I  A  E  R  :  L  R  R  E  R  I  A  E  R  I  R  A  L  Q  E  L  V  P  S  V  N  K  :  T  D  R  A  V  M  L  D  E  I  V  D  Y  I  K  F  L  R  L  Q  V  K  :  V  L  S  M  S  R  L  G  G  A  G  A  V  A  P  L  V  T  D  I  P  I  S  S  V  E  :  E  E  S  S  E  G  G  N  N  N  Q  P  A  W  E  K  W  S  S  D  G  T  E  R  Q  V  A  K  L  M  E  E  N  V  G  A  A  M  Q  F  L  Q  S  K  A  L  C  I  M  P  I  S  L  A  S  A  I  Y  H  S  Q  P  P  D  T  S  S  L  V  K  P  E  T  N  P  P  S  *  M  N  T  L  I  E  K  G  D  I  T  C  *  *  P  *  R  I  F  L  Q  W  M  V  P  T  F  I  Y  S  S  N  I  *  L  F  V  E  K  T  G  F  F  F  K  N  I  Y  V  *  S  K  P  F  S  I  I  Y  I  F  E  *  F  C  S  S  I  L  </first_frame>
            <second_frame>  L  S  K  A  L  G  D  S  L  S  F  I  F  F  M  A  L  T  A  L  *  K  V  A  K  H  T  H  K  Q  P  K  T  H  T  S  I  S  I  F  C  L  Y  I  Y  I  Y  M  *  Q  V  L  V  R  V  L  I  C  T  P  S  Y  Q  F  R  C  K  E  H  F  F  N  *  Y  L  F  N  *  M  L  F  *  G  I  K  V  V  E  N  S  S  D  P  R  K  I  E  S  L  *  F  L  L  W  L  T  T  L  L  R  D  L  L  M  I  S  L  T  K  S  W  D  F  L  L  T  M  E  Q  N  L  I  W  R  E  M  M  P  E  L  Y  R  R  R  *  C  S  S  L  T  L  V  M  G  Q  V  S  L  L  E  W  V  L  G  L  V  *  V  V  G  G  S  M  V  M  V  G  V  V  L  F  L  *  G  *  V  *  N  K  G  K  V  G  S  *  R  W  M  M  F  Q  H  L  E  G  G  L  E  M  M  L  L  I  A  E  L  L  L  L  S  N  L :   V  F  M  D  N  R  C  L  Q  C  R  I  P  L  Q  Y  V  Q  G  *  E  L  G  E  D  K  L  L  I  H  I  A  *  R  R  G :   Y  V  E  R  G  *  Q  K  E  L  E  H  C  K  S  W  F  P  V  S  I  R :   L  I  E  L  *  C  L  M  K  L  *  I  I  S  N  S  Y  G  C  K  *  R :   C  *  A  *  V  G  *  E  E  L  V  Q  *  H  H  L  L  Q  T  F  Q  Y  H  Q  *  R :   K  R  A  V  K  V  E  I  I  T  N  Q  L  G  K  S  G  Q  V  M  A  Q  K  G  K  W  L  N  S  W  K  K  M  L  V  L  Q  C  N  F  F  S  L  K  H  Y  V  *  C  L  F  L  L  H  Q  Q  F  I  T  L  S  H  Q  I  H  Q  V  L  L  S  Q  K  Q  I  L  L  H  R  *  T  P  L  *  K  K  V  T  *  H  A  N  D  L  K  E  F  S  C  S  G  W  F  L  L  L  S  I  Q  V  I  F  S  F  L  L  K  K  Q  G  S  F  L  K  I  F  M  Y  K  V  N  H  F  L  S  F  I  Y  L  S  S  F  V  L  R  Y  L </second_frame>
            <third_frame>   *  A  K  L  *  V  T  P  F  P  L  F  S  S  W  L  S  L  L  F  R  K  *  Q  N  T  H  T  N  N  P  K  H  T  L  P  F  P  F  F  A  Y  I  Y  I  Y  I  C  N  K  Y  L  L  E  Y  *  F  V  H  P  L  I  N  S  V  V  K  N  T  F  L  T  S  I  C  S  I  E  C  F  S  E  E  L  R  W  S  K  T  A  P  I  Q  E  R  L  N  L  Y  S  F  C  Y  G  *  Q  P  F  *  G  T  F  *  *  F  L  *  P  N  L  G  I  S  C  L  Q  W  S  R  T  *  F  G  G  K  *  C  R  S  Y  T  A  G  D  D  A  P  A  *  L  W  *  W  V  K  S  V  Y  W  S  G  S  W  G  W  F  R  W  W  G  V  P  W  S  W  W  G  W  F  F  S  F  R  V  E  F  R  T  R  E  R  W  V  L  E  D  G  *  C  F  S  T  W  K  E  V  *  R  *  C  C  *  *  Q  S  F  F  F  C  Q  T   : W  F  S  W  T  T  D  A  F  N  A  A  S  P  C  N  T  S  K  G  E  S  *  A  R  T  S  Y  *  S  T  *  H  S  G  E   : V  T  *  R  E  D  S  R  K  N  *  S  I  A  R  V  G  S  Q  C  Q  *   : D  *  *  S  C  N  A  *  *  N  C  R  L  Y  Q  I  P  T  A  A  S  E   : G  V  E  H  E  *  V  R  R  S  W  C  S  S  T  T  C  Y  R  H  S  N  I  I  S  R   : G  R  E  Q  *  R  W  K  *  *  P  T  S  L  G  K  V  V  K  *  W  H  R  K  A  S  G  *  T  H  G  R  K  C  W  C  C  N  A  I  S  S  V  *  S  T  M  Y  N  A  Y  F  S  C  I  S  N  L  S  L  S  A  T  R  Y  I  K  S  C  *  A  R  N  K  S  S  F  I  D  E  H  P  Y  R  K  R  *  H  N  M  L  M  T  L  K  N  F  L  A  V  D  G  S  Y  F  Y  L  F  K  *  Y  L  A  F  C  *  K  N  R  V  L  F  *  K  Y  L  C  I  K  *  T  I  F  Y  H  L  Y  I  *  V  V  L  F  F  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86555" stop="86929"/>
                    <exon start="87662" stop="87769"/>
                    <exon start="88219" stop="88284"/>
                    <exon start="89436" stop="89501"/>
                    <exon start="90188" stop="90265"/>
                    <exon start="90364" stop="90597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFIVSAMANNPSEGPSDDFFDQILGFPAYNGAEPNLAGNDAGAIPPAMMLQLNSGDGSSQFTGVGLGVGLGGGGFHGHGGGGSFPLGLSLEQGKGGFLKMDDVSAPGRRFRDDVVDSRASSSVKPGFHGQPMPSMPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLDEIVDYIKFLRLQVKVLSMSRLGGAGAVAPLVTDIPISSVEEESSEGGNNNQPAWEKWSSDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQPPDTSSLVKPETNPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="99973" PGL_stop="91762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99973" e_stop="99781"/>
            <exon e_start="99685" e_stop="99653"/>
            <exon e_start="99551" e_stop="99486"/>
            <exon e_start="98467" e_stop="98351"/>
            <exon e_start="97984" e_stop="97907"/>
            <exon e_start="97810" e_stop="97705"/>
            <exon e_start="97551" e_stop="97505"/>
            <exon e_start="92622" e_stop="92545"/>
            <exon e_start="92445" e_stop="92380"/>
            <exon e_start="92291" e_stop="91762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.213" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.014" acc_prob="0.447" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99973" e_stop="99781" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99685" e_stop="99653" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.213" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99551" e_stop="99486" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98467" e_stop="98351" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.594">
            <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97984" e_stop="97907" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.014" acc_prob="0.447">
            <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97810" e_stop="97705" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.983">
            <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97551" e_stop="97505" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97504" i_stop="92623" i_length="4882"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92622" e_stop="92545" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92544" i_stop="92446" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92445" e_stop="92380" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.937" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92379" i_stop="92292" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92291" e_stop="91762" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99973" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97505"/>
              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99971" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
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              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97505"/>
              <exon start="92622" stop="92593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99971" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99971" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99965" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
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              <exon start="97551" stop="97505"/>
              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99960" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97505"/>
              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99947" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97505"/>
              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99946" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99943" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99936" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99933" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99933" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99932" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
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              <exon start="97810" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99932" stop="99781"/>
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              <exon start="97810" stop="97791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99920" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99894" stop="99781"/>
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              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99881" stop="99781"/>
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              <exon start="92445" stop="92438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99858" stop="99781"/>
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              <exon start="97810" stop="97723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99670" stop="99653"/>
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              <exon start="92622" stop="92568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98460" stop="98351"/>
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              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97971" stop="97907"/>
              <exon start="97810" stop="97705"/>
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              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="92078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97952" stop="97907"/>
              <exon start="97810" stop="97705"/>
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              <exon start="92291" stop="91966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97728" stop="97705"/>
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              <exon start="92291" stop="91772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92622" stop="92545"/>
              <exon start="92445" stop="92380"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92548" stop="92545"/>
              <exon start="92445" stop="92380"/>
              <exon start="92291" stop="91839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92250" stop="92003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92193" stop="91762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205985" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG : GCATCGCGATCTTTTTCCACTGCACTCAACTAT : CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG : GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA : GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA : GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG : AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG : GGTTGCTGTGTAAATGCTCCAATGATGACGGTGGCTGACTATTCCAATGGATCTGAAGGATATGCTTACAATTATTAT : GAGGATCTCACTCCAAAGAAAGCTGTAGAGATTGTTGAGGCATTCAGGAAAGGTGAAAAACCACCG : CGCGGCACTCAGAATCCAGGTCGTATCAATTGTGGACCAGAAGGAGGAAATACTACATTATTAGGTGAGCCTAAGGCTCCTCCTTGTCGGGATCTAGATGCTGCTGAATAAATTTCTTGTTGTTCAGTTTTTTAATAATGCAAAACAATGGATGGAGAGACGCATCCGATATCATATGCAGTAACTTACCTACTGCATTGATGATATTTAAAGATTGTTTTCTGTCTGTCAGTATAATTACAGGTAAAACTGATTCTTGTTTGTTTTATCGGTTTAACTCTTACCGGATCCAGTGAAAGTCCTTTGTTTTGGGTCAGGATGTAATGTTTTGCCTAGAATTGATTTAGTACAGAATGGTTAGTTTACAATTAGGAAGTTTTTGATTTAAGAAGCCAATAGCTTTTCCAATCATTACACTCTAATACTCAAGTGTACTGGGAGGGAGAAATGGCATTGTTGTTTGGCGTTTTGGATGTGAAAAGAGATTTTCTACTGAATAAATAAACAACTGGCATTCAAAGTTTCTTGTG</gDNA_template>
            <first_frame> A  N  K  E  R  V  C  G  T  Q  N  I  H  S  E  T  S  D  F  S  L  S  S  P  K  S  P  F  S  P  T  T  V  C  S  E  Q  S  P  E  T  K  N  V  R  S  T  R  C  A  T  S  E  R  D  P  N  V  H  P  P  N  Y  S   : G  I  A  I  F  F  H  C  T  Q  L   : S  H  *  Y  T  G  Q  Q  N  G  P  S  L  G  V  *  *  C  K  Q  G  K   : G  E  R  N  T  V  F  L  P  I  Q  L  *  T  I  C  S  D  S  F  V  G  S  C  T  A  A  K  W  R  V  A  T  C  F  G  D  E  C   : S  G  *  G  C  *  S  C  A  N  S  C  I  *  G  C  N  F  L  H  D  V  Q  Q  D  K   : S  W  K  I  S  P  F  G  L  W  H  N  T  L  Y  D  P  W  F  K  R  Y  R  R  S  Y  T  E  A  P  G  S  K  A  Q  * :   S  N  *  G  W  L  I  F  C  W  *  D  G  M  H   : G  L  L  C  K  C  S  N  D  D  G  G  *  L  F  Q  W  I  *  R  I  C  L  Q  L  L   : *  G  S  H  S  K  E  S  C  R  D  C  *  G  I  Q  E  R  *  K  T  T   : A  R  H  S  E  S  R  S  Y  Q  L  W  T  R  R  R  K  Y  Y  I  I  R  *  A  *  G  S  S  L  S  G  S  R  C  C  *  I  N  F  L  L  F  S  F  L  I  M  Q  N  N  G  W  R  D  A  S  D  I  I  C  S  N  L  P  T  A  L  M  I  F  K  D  C  F  L  S  V  S  I  I  T  G  K  T  D  S  C  L  F  Y  R  F  N  S  Y  R  I  Q  *  K  S  F  V  L  G  Q  D  V  M  F  C  L  E  L  I  *  Y  R  M  V  S  L  Q  L  G  S  F  *  F  K  K  P  I  A  F  P  I  I  T  L  *  Y  S  S  V  L  G  G  R  N  G  I  V  V  W  R  F  G  C  E  K  R  F  S  T  E  *  I  N  N  W  H  S  K  F  L  V </first_frame>
            <second_frame>  R  T  R  N  V  C  V  A  R  R  T  F  I  V  R  L  P  I  S  P  F  P  P  Q  N  L  H  F  L  R  P  P  S  A  R  S  N  R  R  R  L  K  M  F  G  R  L  A  A  Q  R  L  N  E  I  R  T  S  I  R  R  T  T  Q  :  A  S  R  S  F  S  T  A  L  N  Y  :  H  I  D  T  P  D  N  K  T  D  L  P  W  E  F  N  N  A  N  K  E  K  :  V  K  E  I  L  S  F  Y  P  S  N  Y  K  Q  S  A  V  I  P  L  L  D  L  A  Q  Q  Q  N  G  G  W  L  P  V  S  A  M  N  A  :  V  A  K  V  V  E  V  A  P  I  R  V  Y  E  V  A  T  F  Y  T  M  F  N  R  T  K  :  V  G  K  Y  H  L  L  V  C  G  T  T  P  C  M  I  R  G  S  R  G  I  E  E  A  I  L  K  H  L  G  V  K  R  N   : E  V  T  K  D  G  L  F  S  V  G  E  M  E  C  M  :  G  C  C  V  N  A  P  M  M  T  V  A  D  Y  S  N  G  S  E  G  Y  A  Y  N  Y  Y  :  E  D  L  T  P  K  K  A  V  E  I  V  E  A  F  R  K  G  E  K  P  P  :  R  G  T  Q  N  P  G  R  I  N  C  G  P  E  G  G  N  T  T  L  L  G  E  P  K  A  P  P  C  R  D  L  D  A  A  E  *  I  S  C  C  S  V  F  *  *  C  K  T  M  D  G  E  T  H  P  I  S  Y  A  V  T  Y  L  L  H  *  *  Y  L  K  I  V  F  C  L  S  V  *  L  Q  V  K  L  I  L  V  C  F  I  G  L  T  L  T  G  S  S  E  S  P  L  F  W  V  R  M  *  C  F  A  *  N  *  F  S  T  E  W  L  V  Y  N  *  E  V  F  D  L  R  S  Q  *  L  F  Q  S  L  H  S  N  T  Q  V  Y  W  E  G  E  M  A  L  L  F  G  V  L  D  V  K  R  D  F  L  L  N  K  *  T  T  G  I  Q  S  F  L   </second_frame>
            <third_frame>   E  Q  G  T  C  V  W  H  A  E  H  S  *  *  D  F  R  F  L  P  F  L  P  K  I  S  I  F  S  D  H  R  L  L  G  A  I  A  G  D  *  K  C  S  V  D  S  L  R  N  V  *  T  R  S  E  R  P  S  A  E  L  L  R :   H  R  D  L  F  P  L  H  S  T  I :   T  L  I  H  R  T  T  K  R  T  F  L  G  S  L  I  M  Q  T  R  K  R :   *  K  K  Y  C  L  S  T  H  P  T  I  N  N  L  Q  *  F  L  C  W  I  L  H  S  S  K  M  E  G  G  Y  L  F  R  R  *  M  Q :   W  L  R  L  L  K  L  R  Q  F  V  Y  M  R  L  Q  L  S  T  R  C  S  T  G  Q  K :   L  E  N  I  T  F  W  F  V  A  Q  H  L  V  *  S  V  V  Q  E  V  S  K  K  L  Y  *  S  T  W  E  *  S  A  M  :  K  *  L  R  M  A  Y  F  L  L  V  R  W  N  A  W :   V  A  V  *  M  L  Q  *  *  R  W  L  T  I  P  M  D  L  K  D  M  L  T  I  I  M :   R  I  S  L  Q  R  K  L  *  R  L  L  R  H  S  G  K  V  K  N  H  R :   A  A  L  R  I  Q  V  V  S  I  V  D  Q  K  E  E  I  L  H  Y  *  V  S  L  R  L  L  L  V  G  I  *  M  L  L  N  K  F  L  V  V  Q  F  F  N  N  A  K  Q  W  M  E  R  R  I  R  Y  H  M  Q  *  L  T  Y  C  I  D  D  I  *  R  L  F  S  V  C  Q  Y  N  Y  R  *  N  *  F  L  F  V  L  S  V  *  L  L  P  D  P  V  K  V  L  C  F  G  S  G  C  N  V  L  P  R  I  D  L  V  Q  N  G  *  F  T  I  R  K  F  L  I  *  E  A  N  S  F  S  N  H  Y  T  L  I  L  K  C  T  G  R  E  K  W  H  C  C  L  A  F  W  M  *  K  E  I  F  Y  *  I  N  K  Q  L  A  F  K  V  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99972" stop="99781"/>
                    <exon start="99685" stop="99653"/>
                    <exon start="99551" stop="99486"/>
                    <exon start="98467" stop="98351"/>
                    <exon start="97984" stop="97907"/>
                    <exon start="97810" stop="97705"/>
                    <exon start="97551" stop="97505"/>
                    <exon start="92622" stop="92545"/>
                    <exon start="92445" stop="92380"/>
                    <exon start="92291" stop="92181"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTRNVCVARRTFIVRLPISPFPPQNLHFLRPPSARSNRRRLKMFGRLAAQRLNEIRTSIRRTTQASRSFSTALNYHIDTPDNKTDLPWEFNNANKEKVKEILSFYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSRGIEEAILKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMMTVADYSNGSEGYAYNYYEDLTPKKAVEIVEAFRKGEKPPRGTQNPGRINCGPEGGNTTLLGEPKAPPCRDLDAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99971" e_stop="99781"/>
            <exon e_start="99685" e_stop="99653"/>
            <exon e_start="99551" e_stop="99486"/>
            <exon e_start="98467" e_stop="98351"/>
            <exon e_start="97984" e_stop="97907"/>
            <exon e_start="97810" e_stop="97705"/>
            <exon e_start="97551" e_stop="97505"/>
            <exon e_start="97145" e_stop="97120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.213" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.014" acc_prob="0.447" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99971" e_stop="99781" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99780" i_stop="99686" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99685" e_stop="99653" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.213" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99652" i_stop="99552" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99551" e_stop="99486" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99485" i_stop="98468" i_length="1018"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98467" e_stop="98351" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.594">
            <gDNA_intron_boundary i_start="98350" i_stop="97985" i_length="366"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97984" e_stop="97907" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.014" acc_prob="0.447">
            <gDNA_intron_boundary i_start="97906" i_stop="97811" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97810" e_stop="97705" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.983">
            <gDNA_intron_boundary i_start="97704" i_stop="97552" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97551" e_stop="97505" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.979">
            <gDNA_intron_boundary i_start="97504" i_stop="97146" i_length="359"/>
          </intron>
          <exon e_serial="8" e_score="0.538">
            <gDNA_exon_boundary e_start="97145" e_stop="97120" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99971" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99971" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99946" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99943" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99932" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99932" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99920" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99858" stop="99781"/>
              <exon start="99685" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99670" stop="99653"/>
              <exon start="99551" stop="99486"/>
              <exon start="98467" stop="98351"/>
              <exon start="97984" stop="97907"/>
              <exon start="97810" stop="97705"/>
              <exon start="97551" stop="97505"/>
              <exon start="97145" stop="97120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAAGGAACGTGTGTGTGGCACGCAGAACATTCATAGTGAGACTTCCGATTTCTCCCTTTCCTCCCCAAAATCTCCATTTTCTCCGACCACCGTCTGCTCGGAGCAATCGCCGGAGACTAAAAATGTTCGGTCGACTCGCTGCGCAACGTCTGAACGAGATCCGAACGTCCATCCGCCGAACTACTCAG : GCATCGCGATCTTTTTCCACTGCACTCAACTAT : CACATTGATACACCGGACAACAAAACGGACCTTCCTTGGGAGTTTAATAATGCAAACAAGGAAAAG : GTGAAAGAAATACTGTCTTTCTACCCATCCAACTATAAACAATCTGCAGTGATTCCTTTGTTGGATCTTGCACAGCAGCAAAATGGAGGGTGGCTACCTGTTTCGGCGATGAATGCA : GTGGCTAAGGTTGTTGAAGTTGCGCCAATTCGTGTATATGAGGTTGCAACTTTCTACACGATGTTCAACAGGACAAAA : GTTGGAAAATATCACCTTTTGGTTTGTGGCACAACACCTTGTATGATCCGTGGTTCAAGAGGTATCGAAGAAGCTATACTGAAGCACCTGGGAGTAAAGCGCAATG : AAGTAACTAAGGATGGCTTATTTTCTGTTGGTGAGATGGAATGCATG : ATTCGTTATGCATATGCACTCTTAAT</gDNA_template>
            <first_frame> E  Q  G  T  C  V  W  H  A  E  H  S  *  *  D  F  R  F  L  P  F  L  P  K  I  S  I  F  S  D  H  R  L  L  G  A  I  A  G  D  *  K  C  S  V  D  S  L  R  N  V  *  T  R  S  E  R  P  S  A  E  L  L  R :   H  R  D  L  F  P  L  H  S  T  I :   T  L  I  H  R  T  T  K  R  T  F  L  G  S  L  I  M  Q  T  R  K  R :   *  K  K  Y  C  L  S  T  H  P  T  I  N  N  L  Q  *  F  L  C  W  I  L  H  S  S  K  M  E  G  G  Y  L  F  R  R  *  M  Q :   W  L  R  L  L  K  L  R  Q  F  V  Y  M  R  L  Q  L  S  T  R  C  S  T  G  Q  K :   L  E  N  I  T  F  W  F  V  A  Q  H  L  V  *  S  V  V  Q  E  V  S  K  K  L  Y  *  S  T  W  E  *  S  A  M  :  K  *  L  R  M  A  Y  F  L  L  V  R  W  N  A  * :   F  V  M  H  M  H  S  *  </first_frame>
            <second_frame>  N  K  E  R  V  C  G  T  Q  N  I  H  S  E  T  S  D  F  S  L  S  S  P  K  S  P  F  S  P  T  T  V  C  S  E  Q  S  P  E  T  K  N  V  R  S  T  R  C  A  T  S  E  R  D  P  N  V  H  P  P  N  Y  S   : G  I  A  I  F  F  H  C  T  Q  L   : S  H  *  Y  T  G  Q  Q  N  G  P  S  L  G  V  *  *  C  K  Q  G  K   : G  E  R  N  T  V  F  L  P  I  Q  L  *  T  I  C  S  D  S  F  V  G  S  C  T  A  A  K  W  R  V  A  T  C  F  G  D  E  C   : S  G  *  G  C  *  S  C  A  N  S  C  I  *  G  C  N  F  L  H  D  V  Q  Q  D  K   : S  W  K  I  S  P  F  G  L  W  H  N  T  L  Y  D  P  W  F  K  R  Y  R  R  S  Y  T  E  A  P  G  S  K  A  Q  * :   S  N  *  G  W  L  I  F  C  W  *  D  G  M  H   : D  S  L  C  I  C  T  L  N </second_frame>
            <third_frame>   T  R  N  V  C  V  A  R  R  T  F  I  V  R  L  P  I  S  P  F  P  P  Q  N  L  H  F  L  R  P  P  S  A  R  S  N  R  R  R  L  K  M  F  G  R  L  A  A  Q  R  L  N  E  I  R  T  S  I  R  R  T  T  Q  :  A  S  R  S  F  S  T  A  L  N  Y  :  H  I  D  T  P  D  N  K  T  D  L  P  W  E  F  N  N  A  N  K  E  K  :  V  K  E  I  L  S  F  Y  P  S  N  Y  K  Q  S  A  V  I  P  L  L  D  L  A  Q  Q  Q  N  G  G  W  L  P  V  S  A  M  N  A  :  V  A  K  V  V  E  V  A  P  I  R  V  Y  E  V  A  T  F  Y  T  M  F  N  R  T  K  :  V  G  K  Y  H  L  L  V  C  G  T  T  P  C  M  I  R  G  S  R  G  I  E  E  A  I  L  K  H  L  G  V  K  R  N   : E  V  T  K  D  G  L  F  S  V  G  E  M  E  C  M  :  I  R  Y  A  Y  A  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99969" stop="99781"/>
                    <exon start="99685" stop="99653"/>
                    <exon start="99551" stop="99486"/>
                    <exon start="98467" stop="98351"/>
                    <exon start="97984" stop="97907"/>
                    <exon start="97810" stop="97705"/>
                    <exon start="97551" stop="97505"/>
                    <exon start="97145" stop="97122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRNVCVARRTFIVRLPISPFPPQNLHFLRPPSARSNRRRLKMFGRLAAQRLNEIRTSIRRTTQASRSFSTALNYHIDTPDNKTDLPWEFNNANKEKVKEILSFYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSRGIEEAILKHLGVKRNEVTKDGLFSVGEMECMIRYAYALL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="102923" PGL_stop="106416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102923" e_stop="103281"/>
            <exon e_start="105369" e_stop="105507"/>
            <exon e_start="105600" e_stop="105684"/>
            <exon e_start="105787" e_stop="105893"/>
            <exon e_start="106266" e_stop="106416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.937" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="102923" e_stop="103281" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="103282" i_stop="105368" i_length="2087"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105369" e_stop="105507" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105508" i_stop="105599" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105600" e_stop="105684" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="105685" i_stop="105786" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105787" e_stop="105893" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.928" acc_prob="0.978">
            <gDNA_intron_boundary i_start="105894" i_stop="106265" i_length="372"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="106266" e_stop="106416" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102923" stop="103281"/>
              <exon start="105369" stop="105507"/>
              <exon start="105600" stop="105684"/>
              <exon start="105787" stop="105893"/>
              <exon start="106266" stop="106416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103084" stop="103281"/>
              <exon start="105369" stop="105507"/>
              <exon start="105600" stop="105684"/>
              <exon start="105787" stop="105855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACTAACCCTTTCTTCTCTTCAACTCCAAGAACCCCTGCAAAATCTCTCTCTTTTCGATTTTTCTCCCAATCCAAGCAAGTACAAACCGCCAAATTAGCTTCGGGTTGTCGTATAAGATGTTCCTTTGAGTACAATAGTTCTGGAAATGGAAACGGTAGTGTGTATGAGTATGAAAGATATGCTGGGGTTTCTCAGTACCCACGGCCTTCCGAAGTACAGTGGAAGAAGGAGCTTTGTAATTCAGTGCAGCTTATTGGTAATGTTGCAGTGCCGGTTCAAATTAAGCATCTTAATTCCGGAAAAGTTGTAGCTTGGACTCGTCTTGCTGTAAGGAAGTCGCAAAACGACACTACTTG : GATTAATTTGACATTCTGGGATGACTTGGCTAATGTTGCCAATCAACATGTGGAGAAAGGACAGCAGATATATGTGTCTGGTCGCCTAATATCAGATACAGTTGAAGGTGATGATGGAAAAGAACAGACTTATTATAAG : GTGGTCGTTCAGCAATTGAATTTTATTGAGAAGAGCTCTCCTCCTATTGCCTCATATAACGGGGACTCTAATTCCATGGCACCAC : GTAAAAAGCAAAATAATTTTGCTGCAAATACCACTGGATCCACGGAGGAGCTATGGCAAGCTTTCTTTGCTAATCCACTAGAATGGTGGGATAATAGGAAGAACAAG : AGGAGTCCAAACTATCCAGACTTCAAGCACAAAGATACCGGTGAAGCATTGTGGGTAGAAGGCAGATACAATCCAACATGGGTGAAATCTCAACTTGCAGTACTGGATTCAAAGATGGAGTCTTTTCATGATCAAAATGGCAGCAGAAATG</gDNA_template>
            <first_frame> F  T  N  P  F  F  S  S  T  P  R  T  P  A  K  S  L  S  F  R  F  F  S  Q  S  K  Q  V  Q  T  A  K  L  A  S  G  C  R  I  R  C  S  F  E  Y  N  S  S  G  N  G  N  G  S  V  Y  E  Y  E  R  Y  A  G  V  S  Q  Y  P  R  P  S  E  V  Q  W  K  K  E  L  C  N  S  V  Q  L  I  G  N  V  A  V  P  V  Q  I  K  H  L  N  S  G  K  V  V  A  W  T  R  L  A  V  R  K  S  Q  N  D  T  T  W :   I  N  L  T  F  W  D  D  L  A  N  V  A  N  Q  H  V  E  K  G  Q  Q  I  Y  V  S  G  R  L  I  S  D  T  V  E  G  D  D  G  K  E  Q  T  Y  Y  K  :  V  V  V  Q  Q  L  N  F  I  E  K  S  S  P  P  I  A  S  Y  N  G  D  S  N  S  M  A  P   : R  K  K  Q  N  N  F  A  A  N  T  T  G  S  T  E  E  L  W  Q  A  F  F  A  N  P  L  E  W  W  D  N  R  K  N  K  :  R  S  P  N  Y  P  D  F  K  H  K  D  T  G  E  A  L  W  V  E  G  R  Y  N  P  T  W  V  K  S  Q  L  A  V  L  D  S  K  M  E  S  F  H  D  Q  N  G  S  R  N  </first_frame>
            <second_frame>  S  L  T  L  S  S  L  Q  L  Q  E  P  L  Q  N  L  S  L  F  D  F  S  P  N  P  S  K  Y  K  P  P  N  *  L  R  V  V  V  *  D  V  P  L  S  T  I  V  L  E  M  E  T  V  V  C  M  S  M  K  D  M  L  G  F  L  S  T  H  G  L  P  K  Y  S  G  R  R  S  F  V  I  Q  C  S  L  L  V  M  L  Q  C  R  F  K  L  S  I  L  I  P  E  K  L  *  L  G  L  V  L  L  *  G  S  R  K  T  T  L  L   : G  L  I  *  H  S  G  M  T  W  L  M  L  P  I  N  M  W  R  K  D  S  R  Y  M  C  L  V  A  *  Y  Q  I  Q  L  K  V  M  M  E  K  N  R  L  I  I  R :   W  S  F  S  N  *  I  L  L  R  R  A  L  L  L  L  P  H  I  T  G  T  L  I  P  W  H  H  :  V  K  S  K  I  I  L  L  Q  I  P  L  D  P  R  R  S  Y  G  K  L  S  L  L  I  H  *  N  G  G  I  I  G  R  T  R :   G  V  Q  T  I  Q  T  S  S  T  K  I  P  V  K  H  C  G  *  K  A  D  T  I  Q  H  G  *  N  L  N  L  Q  Y  W  I  Q  R  W  S  L  F  M  I  K  M  A  A  E  M </second_frame>
            <third_frame>   H  *  P  F  L  L  F  N  S  K  N  P  C  K  I  S  L  F  S  I  F  L  P  I  Q  A  S  T  N  R  Q  I  S  F  G  L  S  Y  K  M  F  L  *  V  Q  *  F  W  K  W  K  R  *  C  V  *  V  *  K  I  C  W  G  F  S  V  P  T  A  F  R  S  T  V  E  E  G  A  L  *  F  S  A  A  Y  W  *  C  C  S  A  G  S  N  *  A  S  *  F  R  K  S  C  S  L  D  S  S  C  C  K  E  V  A  K  R  H  Y  L  :  D  *  F  D  I  L  G  *  L  G  *  C  C  Q  S  T  C  G  E  R  T  A  D  I  C  V  W  S  P  N  I  R  Y  S  *  R  *  *  W  K  R  T  D  L  L  *   : G  G  R  S  A  I  E  F  Y  *  E  E  L  S  S  Y  C  L  I  *  R  G  L  *  F  H  G  T  T :   *  K  A  K  *  F  C  C  K  Y  H  W  I  H  G  G  A  M  A  S  F  L  C  *  S  T  R  M  V  G  *  *  E  E  Q   : E  E  S  K  L  S  R  L  Q  A  Q  R  Y  R  *  S  I  V  G  R  R  Q  I  Q  S  N  M  G  E  I  S  T  C  S  T  G  F  K  D  G  V  F  S  *  S  K  W  Q  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102923" stop="103281"/>
                    <exon start="105369" stop="105507"/>
                    <exon start="105600" stop="105684"/>
                    <exon start="105787" stop="105893"/>
                    <exon start="106266" stop="106415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTNPFFSSTPRTPAKSLSFRFFSQSKQVQTAKLASGCRIRCSFEYNSSGNGNGSVYEYERYAGVSQYPRPSEVQWKKELCNSVQLIGNVAVPVQIKHLNSGKVVAWTRLAVRKSQNDTTWINLTFWDDLANVANQHVEKGQQIYVSGRLISDTVEGDDGKEQTYYKVVVQQLNFIEKSSPPIASYNGDSNSMAPRKKQNNFAANTTGSTEELWQAFFANPLEWWDNRKNKRSPNYPDFKHKDTGEALWVEGRYNPTWVKSQLAVLDSKMESFHDQNGSRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="107644" PGL_stop="106644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107644" e_stop="107438"/>
            <exon e_start="107343" e_stop="107138"/>
            <exon e_start="107044" e_stop="106644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107644" e_stop="107438" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107437" i_stop="107344" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107343" e_stop="107138" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107137" i_stop="107045" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107044" e_stop="106644" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107644" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107642" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107642" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107619" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107618" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107618" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107618" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107618" stop="107438"/>
              <exon start="107343" stop="107138"/>
              <exon start="107044" stop="106946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107319" stop="107138"/>
              <exon start="107044" stop="106989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106847" stop="106644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCAAATCAATCATTCTTTCTAAATCATGAGAATTTACGAGAAGGATATCAATGATCTTGAGGCAACTGAGCTAAGATTAGGTTTGCCTGGGATAATAAACGATGAATCTTCAACATCAACTAGTACTTCTAAAAATAGCAGAAAAAGACCTTCATCTAGTAGTGTAAATGAAAATGAACAACAAGACTCAGCTCCTGCACCAAA : AGCACAAGTTGTTGGTTGGCCACCAGTTCGATCATACAGGAAAAATCATGTGTCTAAATTATCAGAATCTGATAATAATTCCTCAGGAATGTATTTAAAAGTTAGCATGGATGGAGCACCTTATTTGAGGAAAATTGATCTTCAGGTTTACAAAAGTTATCAAGAGCTACTCAAGGCTTTACAAAGCATGTTCAAGTGCACTATTG : GAGTGTATTCAGAAAGAGAAGGATATAATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTAGAATTATCAAAGGATCTGAAGCTAAAGGTCTAGCATGTCTATAAAAACATGGAAATATATATAAACATACATACAAATCTGCTAGGGATGAACAAGTTTCAGTTTTGTAAACTATCTCGATCTTCTATTAGTTTCACGGGATATATAGATCTAGATCTACATGTACAAATAGTTTTATCCTTCTTTTTTTTTTTTTGGAAGAATTTCCTTGTGTATTATGTACGAGTATAAATATACGGGAAGAAATACAAAACTTTAGCACAACATGATGC</gDNA_template>
            <first_frame> N  S  N  Q  S  F  F  L  N  H  E  N  L  R  E  G  Y  Q  *  S  *  G  N  *  A  K  I  R  F  A  W  D  N  K  R  *  I  F  N  I  N  *  Y  F  *  K  *  Q  K  K  T  F  I  *  *  C  K  *  K  *  T  T  R  L  S  S  C  T  K  :  S  T  S  C  W  L  A  T  S  S  I  I  Q  E  K  S  C  V  *  I  I  R  I  *  *  *  F  L  R  N  V  F  K  S  *  H  G  W  S  T  L  F  E  E  N  *  S  S  G  L  Q  K  L  S  R  A  T  Q  G  F  T  K  H  V  Q  V  H  Y  W :   S  V  F  R  K  R  R  I  *  W  I  *  L  C  T  N  I  *  R  Q  G  W  *  L  D  A  C  W  *  C  T  M  G  D  V  Y  K  F  L  Q  K  A  *  N  Y  Q  R  I  *  S  *  R  S  S  M  S  I  K  T  W  K  Y  I  *  T  Y  I  Q  I  C  *  G  *  T  S  F  S  F  V  N  Y  L  D  L  L  L  V  S  R  D  I  *  I  *  I  Y  M  Y  K  *  F  Y  P  S  F  F  F  F  G  R  I  S  L  C  I  M  Y  E  Y  K  Y  T  G  R  N  T  K  L  *  H  N  M  M  </first_frame>
            <second_frame>  I  Q  I  N  H  S  F  *  I  M  R  I  Y  E  K  D  I  N  D  L  E  A  T  E  L  R  L  G  L  P  G  I  I  N  D  E  S  S  T  S  T  S  T  S  K  N  S  R  K  R  P  S  S  S  S  V  N  E  N  E  Q  Q  D  S  A  P  A  P  K :   A  Q  V  V  G  W  P  P  V  R  S  Y  R  K  N  H  V  S  K  L  S  E  S  D  N  N  S  S  G  M  Y  L  K  V  S  M  D  G  A  P  Y  L  R  K  I  D  L  Q  V  Y  K  S  Y  Q  E  L  L  K  A  L  Q  S  M  F  K  C  T  I   : G  V  Y  S  E  R  E  G  Y  N  G  S  D  Y  A  P  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  E  M  F  I  S  S  C  K  R  L  R  I  I  K  G  S  E  A  K  G  L  A  C  L  *  K  H  G  N  I  Y  K  H  T  Y  K  S  A  R  D  E  Q  V  S  V  L  *  T  I  S  I  F  Y  *  F  H  G  I  Y  R  S  R  S  T  C  T  N  S  F  I  L  L  F  F  F  L  E  E  F  P  C  V  L  C  T  S  I  N  I  R  E  E  I  Q  N  F  S  T  T  *  C </second_frame>
            <third_frame>   F  K  S  I  I  L  S  K  S  *  E  F  T  R  R  I  S  M  I  L  R  Q  L  S  *  D  *  V  C  L  G  *  *  T  M  N  L  Q  H  Q  L  V  L  L  K  I  A  E  K  D  L  H  L  V  V  *  M  K  M  N  N  K  T  Q  L  L  H  Q   : K  H  K  L  L  V  G  H  Q  F  D  H  T  G  K  I  M  C  L  N  Y  Q  N  L  I  I  I  P  Q  E  C  I  *  K  L  A  W  M  E  H  L  I  *  G  K  L  I  F  R  F  T  K  V  I  K  S  Y  S  R  L  Y  K  A  C  S  S  A  L  L  :  E  C  I  Q  K  E  K  D  I  M  D  L  I  M  H  Q  H  M  K  T  R  M  V  I  G  C  L  L  V  M  Y  H  G  R  C  L  *  V  L  A  K  G  L  E  L  S  K  D  L  K  L  K  V  *  H  V  Y  K  N  M  E  I  Y  I  N  I  H  T  N  L  L  G  M  N  K  F  Q  F  C  K  L  S  R  S  S  I  S  F  T  G  Y  I  D  L  D  L  H  V  Q  I  V  L  S  F  F  F  F  F  W  K  N  F  L  V  Y  Y  V  R  V  *  I  Y  G  K  K  Y  K  T  L  A  Q  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107619" stop="107438"/>
                    <exon start="107343" stop="107138"/>
                    <exon start="107044" stop="106872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMRIYEKDINDLEATELRLGLPGIINDESSTSTSTSKNSRKRPSSSSVNENEQQDSAPAPKAQVVGWPPVRSYRKNHVSKLSESDNNSSGMYLKVSMDGAPYLRKIDLQVYKSYQELLKALQSMFKCTIGVYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWEMFISSCKRLRIIKGSEAKGLACL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106882" stop="106685"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVYKNMEIYINIHTNLLGMNKFQFCKLSRSSISFTGYIDLDLHVQIVLSFFFFFWKNFLVYYVRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="120289" PGL_stop="112857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120273" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115502" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114856" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113407" e_stop="113015"/>
            <exon e_start="112878" e_stop="112857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.191" e_score="1.000"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120273" e_stop="120228" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.767">
            <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115502" e_stop="115472" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114856" e_stop="114423" e_length="434"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113407" e_stop="113015" e_length="393"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.191">
            <gDNA_intron_boundary i_start="113014" i_stop="112879" i_length="136"/>
          </intron>
          <exon e_serial="12" e_score="0.455">
            <gDNA_exon_boundary e_start="112878" e_stop="112857" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120273" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114423"/>
              <exon start="113757" stop="113731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115497" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114739" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114573" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113015"/>
              <exon start="112878" stop="112857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113745" stop="113696"/>
              <exon start="113407" stop="113076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : GATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTA : GGTGACATTAGAAATAGAAATT</gDNA_template>
            <first_frame> S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   F  E  V  K  N  Y  V  M  Q  L  *  K  L  A  A  G  *  C  F  R  Y  A  G  L  L  R  C  L  L  I  G  S  V  S  S  I  S  V  L  N  M  F  V  L  L  L  L  *  L  F  H  T  C  G  H  W  I  T  N  Y  *  L  L  F  H  R  C  L  L  I  F  Q  *  F  D  W  I  I  K  *  V  S  K  D  A  E  G  I  D  I  W  *  S  S  F  A  C  C  *  R  C  L  F  P  F  Y  I  F  F  F  M  V  S  F  A  D  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K  V  E  Y  F  T  L  Y  E  F  F  F  Y  I  L  *  K  G  A  I  F  L  :  G  D  I  R  N  R  N  </first_frame>
            <second_frame>  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  R :   I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : N  L  K  *  R  I  T  L  C  N  C  E  S  W  P  L  G  N  V  L  D  M  Q  A  C  *  G  V  F  L  L  E  V  L  A  Q  S  V  F  S  I  C  L  C  Y  F  C  Y  N  F  F  I  L  V  G  T  G  *  L  I  I  N  C  S  F  I  G  V  C  *  Y  F  N  N  L  I  G  *  L  N  K  F  L  K  T  Q  K  E  *  T  Y  G  E  V  L  L  P  V  A  N  V  A  S  S  L  F  I  Y  F  F  S  W  *  V  L  Q  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  S  N  T  L  L  C  M  S  S  F  S  I  F  C  E  R  V  Q  S  F  * :   V  T  L  E  I  E  I </second_frame>
            <third_frame>   I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  I  *  S  E  E  L  R  Y  A  T  V  K  A  G  R  W  V  M  F  *  I  C  R  P  A  E  V  S  S  Y  W  K  C  *  L  N  Q  C  S  Q  Y  V  C  A  T  S  V  I  T  F  S  Y  L  W  A  L  D  N  *  L  L  I  A  L  S  *  V  S  A  D  I  S  I  I  *  L  D  N  *  I  S  F  *  R  R  R  R  N  R  H  M  V  K  F  F  C  L  L  L  T  L  P  L  P  F  L  Y  I  F  F  H  G  E  F  C  R  H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G  R  I  L  Y  F  V  *  V  L  F  L  Y  F  V  K  G  C  N  L  F   : R  *  H  *  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120273" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114856" stop="114823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMEDPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQFEVKNYVMQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114607" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113407" stop="113394"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRNRHMVKFFCLLLTLPLPFLYIFFHGEFCRHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTDRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120273" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115502" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114856" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113596" e_stop="113568"/>
            <exon e_start="113407" e_stop="113007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120273" e_stop="120228" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.767">
            <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115502" e_stop="115472" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="115046" i_stop="114857" i_length="190"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114856" e_stop="114423" e_length="434"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.778">
            <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113596" e_stop="113568" e_length="29"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="113407" e_stop="113007" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120273" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114423"/>
              <exon start="113757" stop="113731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115497" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114856" stop="114618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : GATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : ATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : GAAAGTCCCCTAATGTTGCTAAATGGAGG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCAT</gDNA_template>
            <first_frame> S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   F  E  V  K  N  Y  V  M  Q  L  *  K  L  A  A  G  *  C  F  R  Y  A  G  L  L  R  C  L  L  I  G  S  V  S  S  I  S  V  L  N  M  F  V  L  L  L  L  *  L  F  H  T  C  G  H  W  I  T  N  Y  *  L  L  F  H  R  C  L  L  I  F  Q  *  F  D  W  I  I  K  *  V  S  K  D  A  E  G  I  D  I  W  *  S  S  F  A  C  C  *  R  C  L  F  P  F  Y  I  F  F  F  M  V  S  F  A  D  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  E  S  P  L  M  L  L  N  G  G :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  S  N  T  L  L  C  M  S  S  F  S  I  F  C  E  R  V  Q  S  F  *  L  S  </first_frame>
            <second_frame>  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  R :   I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : N  L  K  *  R  I  T  L  C  N  C  E  S  W  P  L  G  N  V  L  D  M  Q  A  C  *  G  V  F  L  L  E  V  L  A  Q  S  V  F  S  I  C  L  C  Y  F  C  Y  N  F  F  I  L  V  G  T  G  *  L  I  I  N  C  S  F  I  G  V  C  *  Y  F  N  N  L  I  G  *  L  N  K  F  L  K  T  Q  K  E  *  T  Y  G  E  V  L  L  P  V  A  N  V  A  S  S  L  F  I  Y  F  F  S  W  *  V  L  Q  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   K  V  P  *  C  C  *  M  E   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G  R  I  L  Y  F  V  *  V  L  F  L  Y  F  V  K  G  C  N  L  F  S  S  H </second_frame>
            <third_frame>   I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  I  *  S  E  E  L  R  Y  A  T  V  K  A  G  R  W  V  M  F  *  I  C  R  P  A  E  V  S  S  Y  W  K  C  *  L  N  Q  C  S  Q  Y  V  C  A  T  S  V  I  T  F  S  Y  L  W  A  L  D  N  *  L  L  I  A  L  S  *  V  S  A  D  I  S  I  I  *  L  D  N  *  I  S  F  *  R  R  R  R  N  R  H  M  V  K  F  F  C  L  L  L  T  L  P  L  P  F  L  Y  I  F  F  H  G  E  F  C  R  H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : G  K  S  P  N  V  A  K  W  R  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K  V  E  Y  F  T  L  Y  E  F  F  F  Y  I  L  *  K  G  A  I  F  L  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120273" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114856" stop="114823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMEDPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQFEVKNYVMQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114607" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113596" stop="113568"/>
                    <exon start="113407" stop="113315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRNRHMVKFFCLLLTLPLPFLYIFFHGEFCRHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTGKSPNVAKWRIDYNDRPNAELIMKSKNNADLVIKSIDELR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120273" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115502" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114509" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113596" e_stop="113568"/>
            <exon e_start="113407" e_stop="113007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120273" e_stop="120228" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.767">
            <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115502" e_stop="115472" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114509" e_stop="114423" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.778">
            <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113596" e_stop="113568" e_length="29"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="113407" e_stop="113007" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120273" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120270" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114509" stop="114454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116500" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114509" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115079" stop="115047"/>
              <exon start="114509" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : GATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : GAAAGTCCCCTAATGTTGCTAAATGGAGG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCAT</gDNA_template>
            <first_frame> S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : G  K  S  P  N  V  A  K  W  R  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K  V  E  Y  F  T  L  Y  E  F  F  F  Y  I  L  *  K  G  A  I  F  L  A  L   </first_frame>
            <second_frame>  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  R :   I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : N  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  E  S  P  L  M  L  L  N  G  G :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  S  N  T  L  L  C  M  S  S  F  S  I  F  C  E  R  V  Q  S  F  *  L  S  </second_frame>
            <third_frame>   I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   K  V  P  *  C  C  *  M  E   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G  R  I  L  Y  F  V  *  V  L  F  L  Y  F  V  K  G  C  N  L  F  S  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120273" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114509" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113596" stop="113568"/>
                    <exon start="113407" stop="113315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMEDPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTGKSPNVAKWRIDYNDRPNAELIMKSKNNADLVIKSIDELR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="114994" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113407" e_stop="113015"/>
            <exon e_start="112878" e_stop="112857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.191" e_score="1.000"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="114994" e_stop="114423" e_length="572"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113407" e_stop="113015" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.191">
            <gDNA_intron_boundary i_start="113014" i_stop="112879" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="0.455">
            <gDNA_exon_boundary e_start="112878" e_stop="112857" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114994" stop="114472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114739" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114573" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113015"/>
              <exon start="112878" stop="112857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113745" stop="113696"/>
              <exon start="113407" stop="113076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTCTAAGTGTGTATCAATCTTGTGTGTTCAATTCACTATTTTGAGGGGATATTGATGAATGGATGAATGAGCAAAGAATATAAGTTTATCAGTTCATTTCTTTGAATTTTGTTAATGCTCTATGTAATGGTCAGATTTGAAGTGAAGAATTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTTCTTATTGGAAGTGTTAGCTCAATCAGTGTTCTCAATATGTTTGTGCTACTTCTGTTATAACTTTTTCATACTTGTGGGCACTGGATAACTAATTATTAATTGCTCTTTCATAGGTGTCTGCTGATATTTCAATAATTTGATTGGATAATTAAATAAGTTTCTAAAGACGCAGAAGGAATAGACATATGGTGAAGTTCTTTTGCCTGTTGCTAACGTTGCCTCTTCCCTTTTTATATATTTTTTTTCATGGTGAGTTTTGCAGACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTA : GGTGACATTAGAAATAGAAATT</gDNA_template>
            <first_frame> Q  I  L  S  V  Y  Q  S  C  V  F  N  S  L  F  *  G  D  I  D  E  W  M  N  E  Q  R  I  *  V  Y  Q  F  I  S  L  N  F  V  N  A  L  C  N  G  Q  I  *  S  E  E  L  R  Y  A  T  V  K  A  G  R  W  V  M  F  *  I  C  R  P  A  E  V  S  S  Y  W  K  C  *  L  N  Q  C  S  Q  Y  V  C  A  T  S  V  I  T  F  S  Y  L  W  A  L  D  N  *  L  L  I  A  L  S  *  V  S  A  D  I  S  I  I  *  L  D  N  *  I  S  F  *  R  R  R  R  N  R  H  M  V  K  F  F  C  L  L  L  T  L  P  L  P  F  L  Y  I  F  F  H  G  E  F  C  R  H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G  R  I  L  Y  F  V  *  V  L  F  L  Y  F  V  K  G  C  N  L  F   : R  *  H  *  K  *  K   </first_frame>
            <second_frame>  K  F  *  V  C  I  N  L  V  C  S  I  H  Y  F  E  G  I  L  M  N  G  *  M  S  K  E  Y  K  F  I  S  S  F  L  *  I  L  L  M  L  Y  V  M  V  R  F  E  V  K  N  Y  V  M  Q  L  *  K  L  A  A  G  *  C  F  R  Y  A  G  L  L  R  C  L  L  I  G  S  V  S  S  I  S  V  L  N  M  F  V  L  L  L  L  *  L  F  H  T  C  G  H  W  I  T  N  Y  *  L  L  F  H  R  C  L  L  I  F  Q  *  F  D  W  I  I  K  *  V  S  K  D  A  E  G  I  D  I  W  *  S  S  F  A  C  C  *  R  C  L  F  P  F  Y  I  F  F  F  M  V  S  F  A  D  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K  V  E  Y  F  T  L  Y  E  F  F  F  Y  I  L  *  K  G  A  I  F  L  :  G  D  I  R  N  R  N  </second_frame>
            <third_frame>   N  S  K  C  V  S  I  L  C  V  Q  F  T  I  L  R  G  Y  *  *  M  D  E  *  A  K  N  I  S  L  S  V  H  F  F  E  F  C  *  C  S  M  *  W  S  D  L  K  *  R  I  T  L  C  N  C  E  S  W  P  L  G  N  V  L  D  M  Q  A  C  *  G  V  F  L  L  E  V  L  A  Q  S  V  F  S  I  C  L  C  Y  F  C  Y  N  F  F  I  L  V  G  T  G  *  L  I  I  N  C  S  F  I  G  V  C  *  Y  F  N  N  L  I  G  *  L  N  K  F  L  K  T  Q  K  E  *  T  Y  G  E  V  L  L  P  V  A  N  V  A  S  S  L  F  I  Y  F  F  S  W  *  V  L  Q  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  S  N  T  L  L  C  M  S  S  F  S  I  F  C  E  R  V  Q  S  F  * :   V  T  L  E  I  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114607" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113407" stop="113394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRNRHMVKFFCLLLTLPLPFLYIFFHGEFCRHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTDRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="120273" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115502" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114509" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113407" e_stop="113076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120273" e_stop="120228" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.767">
            <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115502" e_stop="115472" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114509" e_stop="114423" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113695" i_stop="113408" i_length="288"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113407" e_stop="113076" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120273" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120270" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114509" stop="114454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117472" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114509" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113407" stop="113362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113745" stop="113696"/>
              <exon start="113407" stop="113076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : GATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGT</gDNA_template>
            <first_frame> S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G </first_frame>
            <second_frame>  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  R :   I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : N  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K   </second_frame>
            <third_frame>   I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120273" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114509" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113407" stop="113394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMEDPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTDRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="120289" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115534" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114509" e_stop="114423"/>
            <exon e_start="113757" e_stop="113696"/>
            <exon e_start="113596" e_stop="113568"/>
            <exon e_start="113407" e_stop="113007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.984"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="120289" e_stop="120228" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.637">
            <gDNA_intron_boundary i_start="116361" i_stop="115535" i_length="827"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115534" e_stop="115472" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="115046" i_stop="114510" i_length="537"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114509" e_stop="114423" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114422" i_stop="113758" i_length="665"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113696" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.778">
            <gDNA_intron_boundary i_start="113695" i_stop="113597" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113596" e_stop="113568" e_length="29"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113567" i_stop="113408" i_length="160"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="113407" e_stop="113007" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120289" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115534" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114509" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113596" stop="113576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115079" stop="115047"/>
              <exon start="114509" stop="114423"/>
              <exon start="113757" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113733" stop="113696"/>
              <exon start="113596" stop="113568"/>
              <exon start="113407" stop="113007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCAATGGAGGCTTCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : TCCAACAACTAACTGGTCAGCCTGTTTCATAGGATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : ACACAAAATAGTGATAGTTGAAGGTAATTATCTGCTTCTTAGAGATGGTGCTTGGAAGGAGGTATCCTCCATGTTTGATGAGAAATG : GTTCGTCGATGTTGATCTTGAGAAAGCAATGCAACGTGTCCTGAAGAGACATATATCTACAG : GAAAGTCCCCTAATGTTGCTAAATGGAGG : ATAGATTACAATGACAGGCCCAATGCTGAGCTAATTATGAAGTCCAAGAACAATGCAGATTTGGTGATCAAGTCGATTGACGAATTGAGGTGAGCCCCCGACTCGTCACCTGTAGTAAGAGTGGTGAGGGAAAATTTGAATGGTGGCATCAAAAGTTAGCCAAATAGAATTTTATCCATTGGCTTGAATTTGATGAGCATGCAGAACCTTTCGTTGCGTTTACGCTTAGAGGTGATGAATAAGTTCAAGGGGACTGGAAATAATCATGCTTACAATACACTTTTTTCCCTTGCAAATAAGATGTAATCTTTTTGACATTTAATGCTTAAGGTCGAATACTTTACTTTGTATGAGTTCTTTTTCTATATTTTGTGAAAGGGTGCAATCTTTTTAGCTCTCAT</gDNA_template>
            <first_frame> C  S  N  G  G  F  I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : V  Q  Q  L  T  G  Q  P  V  S  *  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   H  K  I  V  I  V  E  G  N  Y  L  L  L  R  D  G  A  W  K  E  V  S  S  M  F  D  E  K  W :   F  V  D  V  D  L  E  K  A  M  Q  R  V  L  K  R  H  I  S  T   : G  K  S  P  N  V  A  K  W  R  :  I  D  Y  N  D  R  P  N  A  E  L  I  M  K  S  K  N  N  A  D  L  V  I  K  S  I  D  E  L  R  *  A  P  D  S  S  P  V  V  R  V  V  R  E  N  L  N  G  G  I  K  S  *  P  N  R  I  L  S  I  G  L  N  L  M  S  M  Q  N  L  S  L  R  L  R  L  E  V  M  N  K  F  K  G  T  G  N  N  H  A  Y  N  T  L  F  S  L  A  N  K  M  *  S  F  *  H  L  M  L  K  V  E  Y  F  T  L  Y  E  F  F  F  Y  I  L  *  K  G  A  I  F  L  A  L   </first_frame>
            <second_frame>  A  P  M  E  A  S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  S  N  N  *  L  V  S  L  F  H  R  I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : N  T  K  *  *  *  L  K  V  I  I  C  F  L  E  M  V  L  G  R  R  Y  P  P  C  L  M  R  N   : G  S  S  M  L  I  L  R  K  Q  C  N  V  S  *  R  D  I  Y  L  Q  :  E  S  P  L  M  L  L  N  G  G :   *  I  T  M  T  G  P  M  L  S  *  L  *  S  P  R  T  M  Q  I  W  *  S  S  R  L  T  N  *  G  E  P  P  T  R  H  L  *  *  E  W  *  G  K  I  *  M  V  A  S  K  V  S  Q  I  E  F  Y  P  L  A  *  I  *  *  A  C  R  T  F  R  C  V  Y  A  *  R  *  *  I  S  S  R  G  L  E  I  I  M  L  T  I  H  F  F  P  L  Q  I  R  C  N  L  F  D  I  *  C  L  R  S  N  T  L  L  C  M  S  S  F  S  I  F  C  E  R  V  Q  S  F  *  L  S  </second_frame>
            <third_frame>   L  Q  W  R  L  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  S :   P  T  T  N  W  S  A  C  F  I  G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  T  Q  N  S  D  S  *  R  *  L  S  A  S  *  R  W  C  L  E  G  G  I  L  H  V  *  *  E  M  :  V  R  R  C  *  S  *  E  S  N  A  T  C  P  E  E  T  Y  I  Y  R :   K  V  P  *  C  C  *  M  E   : D  R  L  Q  *  Q  A  Q  C  *  A  N  Y  E  V  Q  E  Q  C  R  F  G  D  Q  V  D  *  R  I  E  V  S  P  R  L  V  T  C  S  K  S  G  E  G  K  F  E  W  W  H  Q  K  L  A  K  *  N  F  I  H  W  L  E  F  D  E  H  A  E  P  F  V  A  F  T  L  R  G  D  E  *  V  Q  G  D  W  K  *  S  C  L  Q  Y  T  F  F  P  C  K  *  D  V  I  F  L  T  F  N  A  *  G  R  I  L  Y  F  V  *  V  L  F  L  Y  F  V  K  G  C  N  L  F  S  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120288" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115534" stop="115523"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APMEASSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMESNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114509" stop="114423"/>
                    <exon start="113757" stop="113696"/>
                    <exon start="113596" stop="113568"/>
                    <exon start="113407" stop="113315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQHKIVIVEGNYLLLRDGAWKEVSSMFDEKWFVDVDLEKAMQRVLKRHISTGKSPNVAKWRIDYNDRPNAELIMKSKNNADLVIKSIDELR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="120273" e_stop="120228"/>
            <exon e_start="119745" e_stop="119612"/>
            <exon e_start="119436" e_stop="119393"/>
            <exon e_start="117508" e_stop="117431"/>
            <exon e_start="116554" e_stop="116362"/>
            <exon e_start="115502" e_stop="115472"/>
            <exon e_start="115358" e_stop="115300"/>
            <exon e_start="115120" e_stop="115047"/>
            <exon e_start="114658" e_stop="114626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.184" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120273" e_stop="120228" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120227" i_stop="119746" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119745" e_stop="119612" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119611" i_stop="119437" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119436" e_stop="119393" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.750" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="117509" i_length="1884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117431" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="117430" i_stop="116555" i_length="876"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116554" e_stop="116362" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.767">
            <gDNA_intron_boundary i_start="116361" i_stop="115503" i_length="859"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115502" e_stop="115472" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115471" i_stop="115359" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115358" e_stop="115300" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="115299" i_stop="115121" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="115120" e_stop="115047" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.184">
            <gDNA_intron_boundary i_start="115046" i_stop="114659" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114658" e_stop="114626" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120273" stop="120228"/>
              <exon start="119745" stop="119612"/>
              <exon start="119436" stop="119393"/>
              <exon start="117508" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117495" stop="117431"/>
              <exon start="116554" stop="116362"/>
              <exon start="115502" stop="115472"/>
              <exon start="115358" stop="115300"/>
              <exon start="115120" stop="115047"/>
              <exon start="114658" stop="114626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCGTTCCCGGCGACCTTCACGAAACTCCGATATCCATTTTCAG : AGACATTGTTGAGCAAAAGAGAAGACTTTCCTGTGTGGATTAAGTGTTATGCGTCTCCTTTGTCCACGAAGAATGCAACTGGAACTTCACTCTGTCAAGCTGGTTTTCGTACTCGGAAGTGGAGTCTGTTGCAG : GTTTCATGTAGCCGAGAGAGAGAGATTCCTGTCATAGAAGCTGG : GTGCATGGATGACATATATGATGCTTTGGCTGAACACCTTGTTCCAACTGCAGCAGCAGCATCAAGCCCTAATTTCAA : GCATATTGTTGGTCTTGCTGGCCCTCCCGGTGCTGGAAAGAGCACTGTTGCATCTGAAGTAGTTAAGAGAGTCAATAAGTTATGGCCCCAAAAGTCTCGTTCCTTTGATTCTCAAGTTGAGCCTCCAGAAGTTGCTATTGTTCTTCCAATGGATGGATTCCACCTTTATCGTCATCAGCTTGATGCAATGGAG : GATCCAAAGGAAGCACACGCAAGAAGGGGCG : CTCCATGGACGTTTGACCCCAATTTACTGCTAGAATGCCTCAAGACTCTTAAAGATCAG : GGATCAGTGTACTGTCCGTCTTTTGACCATGGTGTAGGAGATCCTGTAGAAGATGATATCTTTGTGAACCTTCA : GTGTCTGCTGATATTTCAATAATTTGATTGGAT</gDNA_template>
            <first_frame> S  S  F  P  A  T  F  T  K  L  R  Y  P  F  S   : E  T  L  L  S  K  R  E  D  F  P  V  W  I  K  C  Y  A  S  P  L  S  T  K  N  A  T  G  T  S  L  C  Q  A  G  F  R  T  R  K  W  S  L  L  Q  :  V  S  C  S  R  E  R  E  I  P  V  I  E  A  G :   C  M  D  D  I  Y  D  A  L  A  E  H  L  V  P  T  A  A  A  A  S  S  P  N  F  K :   H  I  V  G  L  A  G  P  P  G  A  G  K  S  T  V  A  S  E  V  V  K  R  V  N  K  L  W  P  Q  K  S  R  S  F  D  S  Q  V  E  P  P  E  V  A  I  V  L  P  M  D  G  F  H  L  Y  R  H  Q  L  D  A  M  E  :  D  P  K  E  A  H  A  R  R  G   : A  P  W  T  F  D  P  N  L  L  L  E  C  L  K  T  L  K  D  Q  :  G  S  V  Y  C  P  S  F  D  H  G  V  G  D  P  V  E  D  D  I  F  V  N  L  Q :   C  L  L  I  F  Q  *  F  D  W   </first_frame>
            <second_frame>  H  R  S  R  R  P  S  R  N  S  D  I  H  F  Q  :  R  H  C  *  A  K  E  K  T  F  L  C  G  L  S  V  M  R  L  L  C  P  R  R  M  Q  L  E  L  H  S  V  K  L  V  F  V  L  G  S  G  V  C  C  R :   F  H  V  A  E  R  E  R  F  L  S  *  K  L   : G  A  W  M  T  Y  M  M  L  W  L  N  T  L  F  Q  L  Q  Q  Q  H  Q  A  L  I  S   : S  I  L  L  V  L  L  A  L  P  V  L  E  R  A  L  L  H  L  K  *  L  R  E  S  I  S  Y  G  P  K  S  L  V  P  L  I  L  K  L  S  L  Q  K  L  L  L  F  F  Q  W  M  D  S  T  F  I  V  I  S  L  M  Q  W  R :   I  Q  R  K  H  T  Q  E  G  A  :  L  H  G  R  L  T  P  I  Y  C  *  N  A  S  R  L  L  K  I  R :   D  Q  C  T  V  R  L  L  T  M  V  *  E  I  L  *  K  M  I  S  L  *  T  F   : S  V  C  *  Y  F  N  N  L  I  G  </second_frame>
            <third_frame>   I  V  P  G  D  L  H  E  T  P  I  S  I  F  R :   D  I  V  E  Q  K  R  R  L  S  C  V  D  *  V  L  C  V  S  F  V  H  E  E  C  N  W  N  F  T  L  S  S  W  F  S  Y  S  E  V  E  S  V  A   : G  F  M  *  P  R  E  R  D  S  C  H  R  S  W  :  V  H  G  *  H  I  *  C  F  G  *  T  P  C  S  N  C  S  S  S  I  K  P  *  F  Q  :  A  Y  C  W  S  C  W  P  S  R  C  W  K  E  H  C  C  I  *  S  S  *  E  S  Q  *  V  M  A  P  K  V  S  F  L  *  F  S  S  *  A  S  R  S  C  Y  C  S  S  N  G  W  I  P  P  L  S  S  S  A  *  C  N  G   : G  S  K  G  S  T  R  K  K  G  R :   S  M  D  V  *  P  Q  F  T  A  R  M  P  Q  D  S  *  R  S   : G  I  S  V  L  S  V  F  *  P  W  C  R  R  S  C  R  R  *  Y  L  C  E  P  S  :  V  S  A  D  I  S  I  I  *  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0135N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120273" stop="120228"/>
                    <exon start="119745" stop="119612"/>
                    <exon start="119436" stop="119393"/>
                    <exon start="117508" stop="117431"/>
                    <exon start="116554" stop="116362"/>
                    <exon start="115502" stop="115472"/>
                    <exon start="115358" stop="115300"/>
                    <exon start="115120" stop="115047"/>
                    <exon start="114658" stop="114637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPATFTKLRYPFSETLLSKREDFPVWIKCYASPLSTKNATGTSLCQAGFRTRKWSLLQVSCSREREIPVIEAGCMDDIYDALAEHLVPTAAAASSPNFKHIVGLAGPPGAGKSTVASEVVKRVNKLWPQKSRSFDSQVEPPEVAIVLPMDGFHLYRHQLDAMEDPKEAHARRGAPWTFDPNLLLECLKTLKDQGSVYCPSFDHGVGDPVEDDIFVNLQCLLIFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 341 chains have been computed
$ 
$ memory statistics:
$ 686000 bytes spliced alignments in total
$ 146 spliced alignments have been stored
$ 4698 bytes was the average size of a spliced alignment
$ 31936 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 390 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:56:20
-->
