<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:38:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M153-R" ref_strand="+" ref_description="SGN-M153-R TG18-R [rflp_markers_reverse]">
      <seq>aaactgatagctttatttaccgatcagacacaaacgagctaagtgaagaatgtattacaatatcccttgagtttcactaaatcgggtactgagtaccagttctttaatggctgatctgaaggggacaatttcttattatctaatagtgctccttctgcaatgggtaatttaacaggagggattttactgatcattttagagatatccggatcaactactcaggcttttagcctttgggcaatctttcgaataaattagactgtaaaaattaactcaaatatttttcacgggacaaacttctcaagacagcagcagaggatcagtccagtctaaattgggaataacacttggttcctagatcccctcaatcactccctctagagcagtgagcttaaagtaggctggttttctacttggaccaattttgtcaataatttgctccctgatcatatcaacatatcttcatgataagtgccctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101112" stop="102192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101412" g_stop="101892" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-M153-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M153-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101412" e_stop="101892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGATAGCTTTATTTACCGATCAGACACAAACGAGCTAAGTGAAGAATGTATTACAATATCCCTTGAGTTTCACTAAATCGGGTACTGAGTACCAGTTCTTTAATGGCTGATCTGAAGGGGACAATTTCTTATTATCTAATAGTGCTCCTTCTGCAATGGGTAATTTAACAGGAGGGATTTTACTGATCATTTTAGAGATATCCGGATCAACTACTCAGGCTTTTAGCCTTTGGGCAATCTTTCGAATAAATTAGACTGTAAAAATTAACTCAAATATTTTTCACGGGACAAACTTCTCAAGACAGCAGCAGAGGATCAGTCCAGTCTAAATTGGGAATAACACTTGGTTCCTAGATCCCCTCAATCACTCCCTCTAGAGCAGTGAGCTTAAAGTAGGCTGGTTTTCTACTTGGACCAATTTTGTCAATAATTTGCTCCCTGATCATATCAACATATCTTCATGATAAGTGCCCTCCT</genome_strand>
        <mrna_strand>AAACTGATAGCTTTATTTACCGATCAGACACAAACGAGCTAAGTGAAGAATGTATTACAATATCCCTTGAGTTTCACTAAATCGGGTACTGAGTACCAGTTCTTTAATGGCTGATCTGAAGGGGACAATTTCTTATTATCTAATAGTGCTCCTTCTGCAATGGGTAATTTAACAGGAGGGATTTTACTGATCATTTTAGAGATATCCGGATCAACTACTCAGGCTTTTAGCCTTTGGGCAATCTTTCGAATAAATTAGACTGTAAAAATTAACTCAAATATTTTTCACGGGACAAACTTCTCAAGACAGCAGCAGAGGATCAGTCCAGTCTAAATTGGGAATAACACTTGGTTCCTAGATCCCCTCAATCACTCCCTCTAGAGCAGTGAGCTTAAAGTAGGCTGGTTTTCTACTTGGACCAATTTTGTCAATAATTTGCTCCCTGATCATATCAACATATCTTCATGATAAGTGCCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M153-F" ref_strand="+" ref_description="SGN-M153-F TG18-F [rflp_markers_forward]">
      <seq>attgaagctttcttgttcccattaagggttgttgattccgtcaaatgcatctaacttgcagctatcctttatatgaataacttgcagctataaatggttttgaacatgttggcaaaaatgtgcattctttgccgactttatcccaaaatctgttaaacgagactaatttacagagttgtatgaaactcaagctccagctgtttcctgttgatgaaggaactagaagatccctggaaatggtaggttaagtaaatctctttgctgttctgtcattaattggttataacatctgatgtaaaacttatttgccatcacttctctttccattctgtgtcaggataatcataacccttacttggagctcactctaagtaatcgaaaaaagatgtcatccgttttggagcatctcaatcgtaaatggggaagttcgagcatagcaactggagaactggtgctttttccttaccatgtacagatggaaaacctggtgcaatccctgagatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="103675" stop="102569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103375" g_stop="102869" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-M153-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M153-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103375" e_stop="102869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGCTTTCTTGTTCCCATTAAGGGTTGTTGATTCCGTCAAATGCATCTAACTTGCAGCTATCCTTTATATGAATAACTTGCAGCTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGTTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGAAGATCCCTGGAAATGGTAGGTTAAGTAAATCTCTTTGCTGTTCTGTCATTAATTGGTTATAACATCTGATGTAAAACTTATTTGCCATCACTTCTCTTTCCATTCTGTGTCAGGATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGAC</genome_strand>
        <mrna_strand>ATTGAAGCTTTCTTGTTCCCATTAAGGGTTGTTGATTCCGTCAAATGCATCTAACTTGCAGCTATCCTTTATATGAATAACTTGCAGCTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGTTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGAAGATCCCTGGAAATGGTAGGTTAAGTAAATCTCTTTGCTGTTCTGTCATTAATTGGTTATAACATCTGATGTAAAACTTATTTGCCATCACTTCTCTTTCCATTCTGTGTCAGGATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="101412" PGL_stop="101892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101412" e_stop="101892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101412" e_stop="101892" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101412" stop="101892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M153-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTGATAGCTTTATTTACCGATCAGACACAAACGAGCTAAGTGAAGAATGTATTACAATATCCCTTGAGTTTCACTAAATCGGGTACTGAGTACCAGTTCTTTAATGGCTGATCTGAAGGGGACAATTTCTTATTATCTAATAGTGCTCCTTCTGCAATGGGTAATTTAACAGGAGGGATTTTACTGATCATTTTAGAGATATCCGGATCAACTACTCAGGCTTTTAGCCTTTGGGCAATCTTTCGAATAAATTAGACTGTAAAAATTAACTCAAATATTTTTCACGGGACAAACTTCTCAAGACAGCAGCAGAGGATCAGTCCAGTCTAAATTGGGAATAACACTTGGTTCCTAGATCCCCTCAATCACTCCCTCTAGAGCAGTGAGCTTAAAGTAGGCTGGTTTTCTACTTGGACCAATTTTGTCAATAATTTGCTCCCTGATCATATCAACATATCTTCATGATAAGTGCCCTCCT</gDNA_template>
            <first_frame> K  L  I  A  L  F  T  D  Q  T  Q  T  S  *  V  K  N  V  L  Q  Y  P  L  S  F  T  K  S  G  T  E  Y  Q  F  F  N  G  *  S  E  G  D  N  F  L  L  S  N  S  A  P  S  A  M  G  N  L  T  G  G  I  L  L  I  I  L  E  I  S  G  S  T  T  Q  A  F  S  L  W  A  I  F  R  I  N  *  T  V  K  I  N  S  N  I  F  H  G  T  N  F  S  R  Q  Q  Q  R  I  S  P  V  *  I  G  N  N  T  W  F  L  D  P  L  N  H  S  L  *  S  S  E  L  K  V  G  W  F  S  T  W  T  N  F  V  N  N  L  L  P  D  H  I  N  I  S  S  *  *  V  P  S  </first_frame>
            <second_frame>  N  *  *  L  Y  L  P  I  R  H  K  R  A  K  *  R  M  Y  Y  N  I  P  *  V  S  L  N  R  V  L  S  T  S  S  L  M  A  D  L  K  G  T  I  S  Y  Y  L  I  V  L  L  L  Q  W  V  I  *  Q  E  G  F  Y  *  S  F  *  R  Y  P  D  Q  L  L  R  L  L  A  F  G  Q  S  F  E  *  I  R  L  *  K  L  T  Q  I  F  F  T  G  Q  T  S  Q  D  S  S  R  G  S  V  Q  S  K  L  G  I  T  L  G  S  *  I  P  S  I  T  P  S  R  A  V  S  L  K  *  A  G  F  L  L  G  P  I  L  S  I  I  C  S  L  I  I  S  T  Y  L  H  D  K  C  P  P </second_frame>
            <third_frame>   T  D  S  F  I  Y  R  S  D  T  N  E  L  S  E  E  C  I  T  I  S  L  E  F  H  *  I  G  Y  *  V  P  V  L  *  W  L  I  *  R  G  Q  F  L  I  I  *  *  C  S  F  C  N  G  *  F  N  R  R  D  F  T  D  H  F  R  D  I  R  I  N  Y  S  G  F  *  P  L  G  N  L  S  N  K  L  D  C  K  N  *  L  K  Y  F  S  R  D  K  L  L  K  T  A  A  E  D  Q  S  S  L  N  W  E  *  H  L  V  P  R  S  P  Q  S  L  P  L  E  Q  *  A  *  S  R  L  V  F  Y  L  D  Q  F  C  Q  *  F  A  P  *  S  Y  Q  H  I  F  M  I  S  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0116C14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="103375" PGL_stop="102869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103375" e_stop="102869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103375" e_stop="102869" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103375" stop="102869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M153-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAAGCTTTCTTGTTCCCATTAAGGGTTGTTGATTCCGTCAAATGCATCTAACTTGCAGCTATCCTTTATATGAATAACTTGCAGCTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGTTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGAAGATCCCTGGAAATGGTAGGTTAAGTAAATCTCTTTGCTGTTCTGTCATTAATTGGTTATAACATCTGATGTAAAACTTATTTGCCATCACTTCTCTTTCCATTCTGTGTCAGGATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGAC</gDNA_template>
            <first_frame> I  E  A  F  L  F  P  L  R  V  V  D  S  V  K  C  I  *  L  A  A  I  L  Y  M  N  N  L  Q  L  *  M  V  L  N  M  L  A  K  M  C  I  L  C  R  L  Y  P  K  I  C  *  T  R  L  I  Y  R  V  V  *  N  S  S  S  S  C  F  L  L  M  K  E  L  E  D  P  W  K  W  *  V  K  *  I  S  L  L  F  C  H  *  L  V  I  T  S  D  V  K  L  I  C  H  H  F  S  F  H  S  V  S  G  *  S  *  P  L  L  G  A  H  S  K  *  S  K  K  D  V  I  R  F  G  A  S  Q  S  *  M  G  K  F  E  H  S  N  W  R  T  G  A  F  S  L  P  C  T  D  G  K  P  G  A  I  P  E  M  D </first_frame>
            <second_frame>  L  K  L  S  C  S  H  *  G  L  L  I  P  S  N  A  S  N  L  Q  L  S  F  I  *  I  T  C  S  Y  K  W  F  *  T  C  W  Q  K  C  A  F  F  A  D  F  I  P  K  S  V  K  R  D  *  F  T  E  L  Y  E  T  Q  A  P  A  V  S  C  *  *  R  N  *  K  I  P  G  N  G  R  L  S  K  S  L  C  C  S  V  I  N  W  L  *  H  L  M  *  N  L  F  A  I  T  S  L  S  I  L  C  Q  D  N  H  N  P  Y  L  E  L  T  L  S  N  R  K  K  M  S  S  V  L  E  H  L  N  R  K  W  G  S  S  S  I  A  T  G  E  L  V  L  F  P  Y  H  V  Q  M  E  N  L  V  Q  S  L  R  W   </second_frame>
            <third_frame>   *  S  F  L  V  P  I  K  G  C  *  F  R  Q  M  H  L  T  C  S  Y  P  L  Y  E  *  L  A  A  I  N  G  F  E  H  V  G  K  N  V  H  S  L  P  T  L  S  Q  N  L  L  N  E  T  N  L  Q  S  C  M  K  L  K  L  Q  L  F  P  V  D  E  G  T  R  R  S  L  E  M  V  G  *  V  N  L  F  A  V  L  S  L  I  G  Y  N  I  *  C  K  T  Y  L  P  S  L  L  F  P  F  C  V  R  I  I  I  T  L  T  W  S  S  L  *  V  I  E  K  R  C  H  P  F  W  S  I  S  I  V  N  G  E  V  R  A  *  Q  L  E  N  W  C  F  F  L  T  M  Y  R  W  K  T  W  C  N  P  *  D  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103077" stop="102871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFAITSLSILCQDNHNPYLELTLSNRKKMSSVLEHLNRKWGSSSIATGELVLFPYHVQMENLVQSLRW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 4080 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 26 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:38:38
-->
