<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 20:54:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="3523" stop="2444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3232" g_stop="2745" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3232" e_stop="2745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGAC-GTACAGAAAGTAGGTGCACACTTCTCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTCTTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAG-AAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTC-TTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="5522" stop="6506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5822" g_stop="6206" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5822" e_stop="6206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTATCTAATTGAGAGTGGGTTCTTGT-TTTTCTTTAGCTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAATCACTAATAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAATGACTCAAAGGGTGAGTCATGTTGTACTTCGGTTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12](-)">
      <seq>aaaatgatgactaagaaaatcattatatttttgatgaaaatgtctgaaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgacaaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttcttcaaatagtccttcaaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="6142" stop="7384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6442" g_stop="7086" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="676" r_length="647" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6442" e_stop="7086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAAAA-GTCTTGAAATTCGTCCTGTTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATACGATAATTTTAAAAT-TGCATGTTCACTTGCTCCATTCTATCGTATGAATGTGGTAGCAGTAAATAGTTAGTCTGAAAGATGACAAATGATTAACGATATGAAAAAAGGCATGAAGGGACGGAATTATAATAGTCATCATTGTGGTAATTATAAAAGAAAGAACACTATGGGTTCTCCAAATAGTCCTTCGAAATGTGAAGACAGTTTTCATTATCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAAATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAGAAAAAAAATG</genome_strand>
        <mrna_strand>TTTGATGAAAATGTCTGAAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATGATATGAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="6416" stop="7395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6716" g_stop="7069" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6716" e_stop="7069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTATCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAAATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="9508" stop="8233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9208" g_stop="8533" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9208" e_stop="8533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTT-TTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCTTCGACGGTTATTTGATATCGATTCCAACAGGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAAATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT-----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="9508" stop="8506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9208" g_stop="8806" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9208" e_stop="8806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTT-TTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT-----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8514" stop="9791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8814" g_stop="9491" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8814" e_stop="9491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8516" stop="9669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8815" g_stop="9369" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8815" e_stop="9369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8519" stop="9572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8819" g_stop="9272" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8819" e_stop="9272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8563" stop="9745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8863" g_stop="9445" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8863" e_stop="9445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8921" stop="9929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9221" g_stop="9629" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9221" e_stop="9629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="8997" stop="10068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9297" g_stop="9777" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9297" e_stop="9777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGAGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCATAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547293" ref_strand="+" ref_description="SGN-E547293 [TUS-71-B15](-)">
      <seq>atacgttatggatacaatgaaatgcgcaatgaggaagagcctattgagaagttatggtagaaaggctaaagaactacatcaaggaagattacatgttctcagttgcagcaaatggagacaatcaaggagaaactgcctccttgattgagaaagacgtcgaagtacttgagagagcttccaacatgggagtggttcatttggttggagaacaagacgtcgtcgcgtgcaaggggtctggtgtaaccaaaagaatggtgatcaactatgcatacaatttcctcaagaggaacttaagacagagtagtaacaaagtattcgatatcccaacgaaacgaatgctcaaagttggaatgacatgtgagctttagggtgattattttctctaaaaatttctttttaaggtttaaaataaatgtgcattgagttgaagggaacaagggagaaggcaccatacatgtttcaacttccatcatcaaaaggtgcttgcacaagaaaaaataatgtctttttttttaatttcttagttttcagtttgttttgtttgtttggattttgtatgagataagctaagctaagcctgattttgtaagagaataagctaagtatttgtattttgttttttcttgtttcaaagaaaagagaagatcaagatatgtctagataaaaaaacaacataggtgtagttgtttttgactagcaaaacatttttgttattaccttgtaatgtcttgtaaaagattgtcagtttatacatgataataataactaatctaagaataaatagtttatagaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17634" stop="16239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17334" g_stop="16542" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="810"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E547293" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17334" e_stop="16542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCTTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTTGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTACGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAGCGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAA-AAAATTGTAAGGTTTAAAATAAATGTGCATAGAGTTGAAGGGAACAAGGGAGAAGGCACCATATATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTG-TTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAA</genome_strand>
        <mrna_strand>ATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATTGAGAAGTTA-TGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCCTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTCGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTATGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAACGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAATTTCTTTTTAAGGTTTAAAATAAATGTGCATTGAGTTGAAGGGAACAAGGGAGAAGGCACCATACATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTCTTTTTTTTTAATTTCTTAGTTTTCAGTTTGTTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTG-TTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTATTACCTTGTAATGTCTTGTAAAAGATTGTCAGTTTATACATGATAATAATAACTAATCTAAGAATAAATAGTTTATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546841" ref_strand="+" ref_description="SGN-E546841 [TUS-70-G16](-)">
      <seq>ataatgtctttttttttaatttcttagttttcagtttgttttgtttgtttggattttgtatgagataagctaagctaagcctgattttgtaagagaataagctaagtatttgtattttgttttttcttgtttcaaagaaaagagaagatcaagatatgtctagataaaaaaacaacataggtgtagttgtttttgactagcaaaacatttttgttattaccttgtaatgtcttgtaaaagattgtcagtttatacatgataataataactaatctaagaataaatagtttatagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17137" stop="16239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16837" g_stop="16542" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="307"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E546841" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16837" e_stop="16542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTG-TTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAA</genome_strand>
        <mrna_strand>ATAATGTCTTTTTTTTTAATTTCTTAGTTTTCAGTTTGTTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTG-TTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTATTACCTTGTAATGTCTTGTAAAAGATTGTCAGTTTATACATGATAATAATAACTAATCTAAGAATAAATAGTTTATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546842" ref_strand="+" ref_description="SGN-E546842 [TUS-70-G16]">
      <seq>ataatgtctttttttttaatttcttagttttcagtttgttttgtttgtttggattttgtatgagataagctaagctaagcctgattttgtaagagaataagctaagtatttgtattttgttttttcttgtttcaaagaaaagagaagatcaagatatgtctagataaaaaaacaacataggtgtagttgtttttgactagcaaaacatttttgttattaccttgtaatgtcttgtaaaagattgtcagtttatacatgataataataactaatctaagaataaatagtttatagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17137" stop="16239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16837" g_stop="16542" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="307"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E546842" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16837" e_stop="16542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTG-TTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAA</genome_strand>
        <mrna_strand>ATAATGTCTTTTTTTTTAATTTCTTAGTTTTCAGTTTGTTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTG-TTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTATTACCTTGTAATGTCTTGTAAAAGATTGTCAGTTTATACATGATAATAATAACTAATCTAAGAATAAATAGTTTATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363748" ref_strand="+" ref_description="SGN-E363748 [cLPP-3-A18]">
      <seq>taatgtctttttttttaatttcttagttttcagtttgttttgtttgtttggattttgtatgagataagctaagctaagcctgattttgtaagagaataagctaagtatttgtattttgttttttcttgtttcaaagaaaagagaagatcaagatatgtctagataaaaaaacaacataggtgtagttgtttttgactagcaaaacatttttgttattaccttgtcatgtcttgtaaaagattgtcagtttatacatgataataataactaatctaagaataaatagtttatagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17136" stop="16239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16836" g_stop="16542" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="306"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E363748" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16836" e_stop="16542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTG-TTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAA</genome_strand>
        <mrna_strand>TAATGTCTTTTTTTTTAATTTCTTAGTTTTCAGTTTGTTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTG-TTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTATTACCTTGTCATGTCTTGTAAAAGATTGTCAGTTTATACATGATAATAATAACTAATCTAAGAATAAATAGTTTATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547736" ref_strand="+" ref_description="SGN-E547736 [TUS-71-M9](-)">
      <seq>tatgtgttccgttgtgtgatacgttatggatacaatgaaatgcgcaatgaggaagagcctattgagaagttattggtagaaaggctaaagaactacatcaaggaagattacatgttctcagttgcagcaaatggagacaatcaaggagaaactgcctccttgattgagaaagacgtcgaagtacttgagagagcttccaacatgggagtggttcatttggttggagaacaagacgtcgtcgcgtgcaaggggtctggtgtaaccaaaagaatggtgatcaactatgcatacaatttcctcaagaggaacttaagacagagtagtaacaaagtattcgatatcccaacgaaacgaatgctcaaagttggaatgacatgtgagctttagggtgattattttctctaaaaatttctttttaaggtttaaaataaatgtgcattgagttgaagggaacaagggagaaggcaccatacatgtttcaacttccatcatcaaaaggtgcttgcacaagaaaaaataatgtctttttttttaatttcttagttttcagtttgttttgtttgtttggattttgtatgagataagctaagctaagcctgattttgtaagagaataagctaagtatttgtattttgttttttcttgtttcaaagaaaagagaagatcaagatatgtctagataaaaaaacaacataggtgtagttgtttttgactagcaaaacatttttgttattaccttgtaatgtcttgtaaaagattgtcagtttatacatgataataataactaatctaagaataaatagtttatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17652" stop="16239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17352" g_stop="16546" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="810" polyA_stop="825"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E547736" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17352" e_stop="16546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCTTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTTGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTACGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAGCGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAA-AAAATTGTAAGGTTTAAAATAAATGTGCATAGAGTTGAAGGGAACAAGGGAGAAGGCACCATATATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTG-TTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTAT</genome_strand>
        <mrna_strand>TATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATTGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCCTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTCGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTATGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAACGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAATTTCTTTTTAAGGTTTAAAATAAATGTGCATTGAGTTGAAGGGAACAAGGGAGAAGGCACCATACATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTCTTTTTTTTTAATTTCTTAGTTTTCAGTTTGTTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTG-TTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTATTACCTTGTAATGTCTTGTAAAAGATTGTCAGTTTATACATGATAATAATAACTAATCTAAGAATAAATAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361723" ref_strand="+" ref_description="SGN-E361723 [cLPP-12-F10]">
      <seq>acaatgaaatgcgcaatgaggaagagcctattgagaagttattggtagaaaggctaaagaactacatcaaggaagattacatgttctcagttgcagcaaatggagacaatcaaggagaaactgcctccttgattgagaaagacgtcgaagtacttgagagagcttccaacatgggagtggttcatttggttggagaacaagacgtcgtcgcgtgcaaggggtctggtgtaaccaaaagaatggtgatcaactatgcatacaatttcctcaagaggaacttaagacagagtagtaacaaagtattcgatatcccaacgaaacgaatgctcaaagttggaatgacatgtgagctttagggtgattattttctctaaaaatttctttttaaggtttaaaataaatgtgcattgagttgaagggaacaagggagaaggcaccatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17621" stop="16578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17321" g_stop="16878" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E361723" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17321" e_stop="16878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGAAATGCGCAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCTTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTTGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTACGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAGCGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAA-AAAATTGTAAGGTTTAAAATAAATGTGCATAGAGTTGAAGGGAACAAGGGAGAAGGCACCATATATG</genome_strand>
        <mrna_strand>ACAATGAAATGCGCAATGAGGAAGAGCCTATTGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCCTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTCGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTATGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAACGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAATTTCTTTTTAAGGTTTAAAATAAATGTGCATTGAGTTGAAGGGAACAAGGGAGAAGGCACCATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360171" ref_strand="+" ref_description="SGN-E360171 [cLPP-14-C7]">
      <seq>tatcatgtacgtatggaactatgtgtaccgtaagaagtatcactacgagctataacacaagatctctcccgaaaaagttaaagaaacattggatgcaaccagttcacatcgccttccaggtcttgccattttctactctgaactagtccacggaatccccccaatcttcaagcattatgttgagaatgtacctgctttacactctgtcctcgtgttcgcttctgtcaaatcacttcccataagcaaagttccactagaagaaaggttcctcttcagaagggtgaaaccatatgacctctatgtgttccgttgtgtgatacgttatggatacaatgaaatgcgcaatgaggaagagcctattgagaagttattggtagaaaggctaaagaactacatcaaggaagattacatgttctcagttgcagcaaatgggagacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="17950" stop="16910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17650" g_stop="17210" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E360171" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17650" e_stop="17210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTCTGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGTGAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAAT-GGAGACAATCA</genome_strand>
        <mrna_strand>TATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTATAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTCTGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGTGAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATTGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGGAGACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547294" ref_strand="+" ref_description="SGN-E547294 [TUS-71-B15]">
      <seq>gtttgtcatagctgtattcgcagccatcattgcaagtcaagctttgatttccgggacattcgctataatccagcaatctctggctttaggatgctttcctcgtgttaaaatcgtgcatacatcaaagaaacatcatggacaaatctacattcctgaaatcaataaccttctcatggtcgcttgtgttcttaccattatcggattcaagactactgaaaagcttagcaatgcttatggaatggcagtggtgtttgtgatgttcctaacatcgtgcttcctcatactagtcatgatcttgatatggaaaaccaacattcttcttattatcgtctatattctaatcattgtttcggttgagcttgtattcctaagcgcagtcctttacaagtttgaacaaggtggttacctccctgtggctttagctctgttcctaatgtttatcatgtacgtatggaactatgtgtaccgtaagaagtatcactacgagctagaacacaagatctctcccgaaaaagttaaagaaacattggatgcaaccagttcacatcgccttccaggtcttgccattttctactctgaactagtccacggaatccccccaatcttcaagcattatgttgagaatgtacctgctttacactctgtcctcgtgttcgcttctgtcaaatcacttcccataagcaaagttccactagaagaaaggttcctcttcagaagggtgaaaccatatgacctctatgtgttccgttgtgtgatacgttatggatacaatgaaatgcgcaatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="18503" stop="17000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18203" g_stop="17968" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17967" i_stop="17853" i_length="115">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17852" g_stop="17300" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="789" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E547294" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18203" e_stop="17968"/>
          <exon e_start="17852" e_stop="17300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCATAGCTGTATTCGCAGCCATCATTGCAAGTCAAGCTTTGATTTCCGGGACATTCGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATACATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGATCGCTTGTGTTCTTACCACTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATGGTAAAGGCCACTTAACTCTATTTCTTCTACGGAGTGAAATAAACATGTAAAAAGTGCAGGGGACTTGCCTTCTTTTCTATATTATTAACTCGATCACTCTATTGCTTGATTACAGGAATAGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTCTGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGTGAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGA</genome_strand>
        <mrna_strand>GTTTGTCATAGCTGTATTCGCAGCCATCATTGCAAGTCAAGCTTTGATTTCCGGGACATTCGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATACATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGGTCGCTTGTGTTCTTACCATTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATG...................................................................................................................GAATGGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATTCCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTCTGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGTGAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623952" ref_strand="+" ref_description="SGN-E623952 [89097]">
      <seq>tctcatgatcgcttgtgttcttaccactattggattcaagactactgaaaagcttagcaatgcttatggaatagcagtggtgtttgtgatgttcctaacatcgtgcttcctcgtactagtcatgatcttgatatggaaaactaacattcttcttattatcgtctatgttctaatcattggttcggttgagcttgtatacctaagctcagtcctttacaagttcgaacaaggtggttaccttcctctggctcttgctatgttcctaatgtttgtcatgtacgtatggaactatgtgtaccgtaagaagtatcactatgagctagaacacaagatctctcccgaaaaagttaaagaaacaatggatgcaactagttcacatcgccttccaggtcttgccattttctactctgaactagtacacggaatcccaccaatcttcaagcattatgttgagaatgtacctgctttacactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="18335" stop="17145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18035" g_stop="17968" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17967" i_stop="17853" i_length="115">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17852" g_stop="17445" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="476" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E623952" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18035" e_stop="17968"/>
          <exon e_start="17852" e_stop="17445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGATCGCTTGTGTTCTTACCACTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATGGTAAAGGCCACTTAACTCTATTTCTTCTACGGAGTGAAATAAACATGTAAAAAGTGCAGGGGACTTGCCTTCTTTTCTATATTATTAACTCGATCACTCTATTGCTTGATTACAGGAATAGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTG</genome_strand>
        <mrna_strand>TCTCATGATCGCTTGTGTTCTTACCACTATTGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATG...................................................................................................................GAATAGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCGTACTAGTCATGATCTTGATATGGAAAACTAACATTCTTCTTATTATCGTCTATGTTCTAATCATTGGTTCGGTTGAGCTTGTATACCTAAGCTCAGTCCTTTACAAGTTCGAACAAGGTGGTTACCTTCCTCTGGCTCTTGCTATGTTCCTAATGTTTGTCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTATGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACAATGGATGCAACTAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTACACGGAATCCCACCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364088" ref_strand="+" ref_description="SGN-E364088 [cLPP-16-P10]">
      <seq>tgttcctaacatcgtgcttcctcatactagtcatgatcttgatatggaaaaccaacattcttcttattatcgtctatattctaatcattgtttcggttgagcttgtattcctaagcgcagtcctttacaagtttgaacaaggtggttacctccctgtggctttagctctgttcctaatgtttatcatgtacgtatggaactatgtgtaccgtaagaagtatcactacgagctagaacacaagatctctcccgaaaaagttaaagaaacattggatgcaaccagttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="18131" stop="17243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17831" g_stop="17543" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E364088" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17831" e_stop="17543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACA</genome_strand>
        <mrna_strand>TGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATTCCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362369" ref_strand="+" ref_description="SGN-E362369 [cLPP-10-J15]">
      <seq>tttgtcatagctgtattcgcagcgatgatttcaagtcaagctttgatttccgggacattcgctataatccagcaatctctggctttaggatgctttcctcgtgttaaaatcgtgcatacatcaaagaaacatcatggacaaatctacattcctgaaatcaataaccttctcatggtcgcttgtgttcttaccattatcggattcaagactactgaaaagcttagcaatgcttatggaatggcagtggtgtttgtgatgttcctaacatcgtgcttcctcatactagtcatgatcttgatatggaaaaccaacattcttcttattatcgtctatattctaatcattgtttcggttgagcttgtattcctaagcgcagtcctttacaagtttgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="18502" stop="17392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18202" g_stop="17968" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17967" i_stop="17853" i_length="115">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17852" g_stop="17692" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="396" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E362369" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18202" e_stop="17968"/>
          <exon e_start="17852" e_stop="17692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCATAGCTGTATTCGCAGCCATCATTGCAAGTCAAGCTTTGATTTCCGGGACATTCGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATACATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGATCGCTTGTGTTCTTACCACTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATGGTAAAGGCCACTTAACTCTATTTCTTCTACGGAGTGAAATAAACATGTAAAAAGTGCAGGGGACTTGCCTTCTTTTCTATATTATTAACTCGATCACTCTATTGCTTGATTACAGGAATAGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAA</genome_strand>
        <mrna_strand>TTTGTCATAGCTGTATTCGCAGCGATGATTTCAAGTCAAGCTTTGATTTCCGGGACATTCGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATACATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGGTCGCTTGTGTTCTTACCATTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATG...................................................................................................................GAATGGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATTCCTAAGCGCAGTCCTTTACAAGTTTGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361564" ref_strand="+" ref_description="SGN-E361564 [cLPP-6-J21]">
      <seq>gagatggtggtacgttcgccttatattcattgatatgccgacattccaaggtgggattgattccgagtacaatggcagaagacagcgatgtctcgacttttaaacttgatatgcctgatagacgtacacgtagggcatcacaacttaagtcggtgctagaaaacagccaattcgcgaagttctttctgctaattgcaacaatgcttggtacttccatggttatcggtgatggtgtcctaacgccctgtatttcagttttgtctgcaattggaggagttaaagcagctgctccaaaggcaatgactgaagacaggatcgtttggcttgcagtaaccatcttgatacttttgttcatgtttcaaagatttggaactgaaaaaagtggttacacatttgcacctatactttgcttatggtttgtattgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="19653" stop="18432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19435" g_stop="19430" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19429" i_stop="19353" i_length="77">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19352" g_stop="19104" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="255" r_length="249" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19103" i_stop="18998" i_length="106">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18997" g_stop="18944" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="309" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18943" i_stop="18852" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18851" g_stop="18732" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="429" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E361564" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19435" e_stop="19430"/>
          <exon e_start="19352" e_stop="19104"/>
          <exon e_start="18997" e_stop="18944"/>
          <exon e_start="18851" e_stop="18732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTAAGTACTTTTCACCTACACACTTTTACTATGCTTTAATTTCCTTTTTAACTCATGATTTTGTCTTTTAATTTCAGGTGGTACGTTCGCCTTATATTCATTGATATGCCGATATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGATGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTGATGGTGTCCTAACACCCTGTATTTCAGGCACGTTGTTGATTTCCCTCTCTTTTATTCTAACAGAAATAATACGAATTAGAACACTGGAGATTAACAGAGTTTATGATACTAATAAGCTAATTTATGTGATCAGTTTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAGACGCAATGACTGAAGGTAAATTTTGCATCTGTTAATGAAAATATCAACTTCTTTATCTGTTTTAATTCTCGATTTACTAATCGTTTGTTTGTTTTCGTGGTATACAGACAGGATCGTTTGGCTTGCAGTAGCCATCTTGATACTTCTGTTCATGTTTCAAAGATTTGGAACTGAAAAAGTTGGTTACACATTTGCACCTATACTTTGCTTATGGTTTGTATTGATTG</genome_strand>
        <mrna_strand>GAGATG.............................................................................GTGGTACGTTCGCCTTATATTCATTGATATGCCGACATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGGTGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTGATGGTGTCCTAACGCCCTGTATTTCAG..........................................................................................................TTTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAAAGGCAATGACTGAAG............................................................................................ACAGGATCGTTTGGCTTGCAGTAACCATCTTGATACTTTTGTTCATGTTTCAAAGATTTGGAACTGAAAAAAGTGGTTACACATTTGCACCTATACTTTGCTTATGGTTTGTATTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359977" ref_strand="+" ref_description="SGN-E359977 [cLPP-9-C16]">
      <seq>accaagatgatgttcccatggagctacaactcaagggaaagaagccttcgagccaaaagttgaaacgacatgactctttggatgtcgaagcaagcaaaatgcccgatgccaaaaaggtaatcggaacgtctgtgctactaaaacttgcattccaaagcataggagtggtgtatggagatattggaacgtcaccattgtacgtgttttcaaccatctttctcgaaggagtaaaacacgaagatgatatacttggtgctctatctctcatcttgtatacgatcaccttgatccctgtcatcaagtacgtattcatcgttctccaagctaatgacaacggagatggtggtacgttcgccttatattcattgatatgccgacattccaaggtgggattgattccgagtacaatggcagaagacagcgatgtctcgacttttaaacttgatatgcctgatagacgtacacgtagggcatcacaacttaagtcggtgctagaaaacagccaattcgcgaagttctttctgctaattgcaacaatgcttggtacttccatggttatcggtgaatggtgtcctaacgccctgtatttcagttttgtctgcaattgnaggagttaaagcagctgctccagaggcaatgactgaagacaggggatcgtttggcttgcagtagccatcttgatacttctgtttcatgtttcaaagatttggactgnaaaaagttggttacacatttgcacctatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20245" stop="18455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19945" g_stop="19830" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19829" i_stop="19656" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19655" g_stop="19430" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="342" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19429" i_stop="19353" i_length="77">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19352" g_stop="19104" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="592" r_length="250" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19103" i_stop="18998" i_length="106">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18997" g_stop="18944" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="646" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18943" i_stop="18852" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18851" g_stop="18755" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="746" r_length="100" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E359977" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19945" e_stop="19830"/>
          <exon e_start="19655" e_stop="19430"/>
          <exon e_start="19352" e_stop="19104"/>
          <exon e_start="18997" e_stop="18944"/>
          <exon e_start="18851" e_stop="18755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGAAGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAATTGCCCGATGCCAAAAAGGTGTGTTAGCTAGCTACCTCAATTAAATACGAGACATTGTATTGTAAGTAGGAGAGTGCCTTGCTGTTATGATCCACCTCATTTAAATACGAGATATGGTATTGTAAGTAGCAGAGTTGCCTTGCTGTTATGATCCACTGAGATTTAGCCCTTCATGTTTTTGTGGTTGAGCAGGTAGTCGGAATGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTCAACCATCTTTCTCGAAGGTGTAAAACACGAAGAGGATATACTTGGTGCTCTATCTCTCATCTTGTATACGATCACCTTGATCCCTGTCGTCAAGTACGTATTCATCGTTCTCCAAGCTAATGACAACGGAGATGGTAAGTACTTTTCACCTACACACTTTTACTATGCTTTAATTTCCTTTTTAACTCATGATTTTGTCTTTTAATTTCAGGTGGTACGTTCGCCTTATATTCATTGATATGCCGATATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGATGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTG-ATGGTGTCCTAACACCCTGTATTTCAGGCACGTTGTTGATTTCCCTCTCTTTTATTCTAACAGAAATAATACGAATTAGAACACTGGAGATTAACAGAGTTTATGATACTAATAAGCTAATTTATGTGATCAGTTTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAGACGCAATGACTGAAGGTAAATTTTGCATCTGTTAATGAAAATATCAACTTCTTTATCTGTTTTAATTCTCGATTTACTAATCGTTTGTTTGTTTTCGTGGTATACAGACA--GGATCGTTTGGCTTGCAGTAGCCATCTTGATACTTCTG-TTCATGTTTCAAAGATTTGGAACTGAAAAAGTTGGTTACACATTTGCACCTATACT</genome_strand>
        <mrna_strand>ACCAAGATGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAAATGCCCGATGCCAAAAAG..............................................................................................................................................................................GTAATCGGAACGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTCAACCATCTTTCTCGAAGGAGTAAAACACGAAGATGATATACTTGGTGCTCTATCTCTCATCTTGTATACGATCACCTTGATCCCTGTCATCAAGTACGTATTCATCGTTCTCCAAGCTAATGACAACGGAGATG.............................................................................GTGGTACGTTCGCCTTATATTCATTGATATGCCGACATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGGTGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTGAATGGTGTCCTAACGCCCTGTATTTCAG..........................................................................................................TTTTGTCTGCAATTGNAGGAGTTAAAGCAGCTGCTCCAGAGGCAATGACTGAAG............................................................................................ACAGGGGATCGTTTGGCTTGCAGTAGCCATCTTGATACTTCTGTTTCATGTTTCAAAGATTTGGACTGNAAAAAGTTGGTTACACATTTGCACCTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364599" ref_strand="+" ref_description="SGN-E364599 [cLPP-18-G5]">
      <seq>gatatgccgacattcgaaggtgggatcgattccgagtacaatggcagaagacagcgatgtctcgacttttaaacttgatatgcctgatagacgtacacgtagggcatcacagcttaagtcggtgctagaaaacagccgatacgcgaagatctttctgctaatcgcaacaatgcttggcacttccatggttatcggagatggtgtcctaacgccctgtatttcagtgttgtctgcaattggaggagttaaagcagctgctccagaggcaatgactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="19627" stop="18646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19327" g_stop="19104" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19103" i_stop="18998" i_length="106">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18997" g_stop="18946" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="276" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E364599" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19327" e_stop="19104"/>
          <exon e_start="18997" e_stop="18946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGCCGATATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGATGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTGATGGTGTCCTAACACCCTGTATTTCAGGCACGTTGTTGATTTCCCTCTCTTTTATTCTAACAGAAATAATACGAATTAGAACACTGGAGATTAACAGAGTTTATGATACTAATAAGCTAATTTATGTGATCAGTTTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAGACGCAATGACTGA</genome_strand>
        <mrna_strand>GATATGCCGACATTCGAAGGTGGGATCGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAGCTTAAGTCGGTGCTAGAAAACAGCCGATACGCGAAGATCTTTCTGCTAATCGCAACAATGCTTGGCACTTCCATGGTTATCGGAGATGGTGTCCTAACGCCCTGTATTTCAG..........................................................................................................TGTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAGAGGCAATGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363618" ref_strand="+" ref_description="SGN-E363618 [cLPP-3-K22]">
      <seq>attggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaagaaaaaaaagatggggagcaacattgaggataaccaagatgatgttcccatggagctacaactcaagggaaagaagccttcgagccaaaagttgaaacgacatgactctttggatgtcgaagcaagcaaaatgcccgatgccaaaaaggtaatcggaacgtctgtgctactaaaacttgcattccaaagcataggagtggtgtatggagatattggaacgtcaccattgtacgtgttttcaaccatctttctcgaaggagtaaaacacgaagatgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20626" stop="19224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20326" g_stop="19830" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19829" i_stop="19656" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19655" g_stop="19524" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="633" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E363618" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20326" e_stop="19830"/>
          <exon e_start="19655" e_stop="19524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATGGGGAGCAACATTGAGGATAACCAAGAAGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAATTGCCCGATGCCAAAAAGGTGTGTTAGCTAGCTACCTCAATTAAATACGAGACATTGTATTGTAAGTAGGAGAGTGCCTTGCTGTTATGATCCACCTCATTTAAATACGAGATATGGTATTGTAAGTAGCAGAGTTGCCTTGCTGTTATGATCCACTGAGATTTAGCCCTTCATGTTTTTGTGGTTGAGCAGGTAGTCGGAATGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTCAACCATCTTTCTCGAAGGTGTAAAACACGAAGAGGATATA</genome_strand>
        <mrna_strand>ATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAGAAAAAAAAGATGGGGAGCAACATTGAGGATAACCAAGATGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAAATGCCCGATGCCAAAAAG..............................................................................................................................................................................GTAATCGGAACGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTCAACCATCTTTCTCGAAGGAGTAAAACACGAAGATGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360337" ref_strand="+" ref_description="SGN-E360337 [cLPP-8-E14]">
      <seq>attggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaagaaaaaaaagatggggagcaacattgaggataaccaagatgatgttcccatggagctacaactcaagggaaagaagccttcgagccaaaagttgaaacgacatgactctttggatgtcgaagcaagcaaaatgcccgatgccaaaaaggtaatcggaacgtctgtgctactaaaacttgcattccaaagcataggagtggtgtatggagatattggaacgtcaccattgtacgtgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20626" stop="19264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20326" g_stop="19830" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19829" i_stop="19656" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19655" g_stop="19564" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="593" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E360337" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20326" e_stop="19830"/>
          <exon e_start="19655" e_stop="19564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATGGGGAGCAACATTGAGGATAACCAAGAAGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAATTGCCCGATGCCAAAAAGGTGTGTTAGCTAGCTACCTCAATTAAATACGAGACATTGTATTGTAAGTAGGAGAGTGCCTTGCTGTTATGATCCACCTCATTTAAATACGAGATATGGTATTGTAAGTAGCAGAGTTGCCTTGCTGTTATGATCCACTGAGATTTAGCCCTTCATGTTTTTGTGGTTGAGCAGGTAGTCGGAATGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTC</genome_strand>
        <mrna_strand>ATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAGAAAAAAAAGATGGGGAGCAACATTGAGGATAACCAAGATGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAAATGCCCGATGCCAAAAAG..............................................................................................................................................................................GTAATCGGAACGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364067" ref_strand="+" ref_description="SGN-E364067 [cLPP-16-F12]">
      <seq>agaattgtagagttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgtgttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgatactcttcgtttttcttctcttttgttaagcaaccaattcattggtgattaagtctacatgtcatggaactcaaccaatttttattgtgcttgatttgatcagcttttttcaaaacaaacaaactgaagataaaattaaattcgctttcctaaattaaaaagaaaaaaaagatggggagcaacattgaggataaccaagatgatgttcccatggagctacaactcaagggaaagaagccttcgagccaaaagttgaaacgacatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20612" stop="19572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20312" g_stop="19872" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E364067" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20312" e_stop="19872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAAC--AAAAAAAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATGGGGAGCAACATTGAGGATAACCAAGAAGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGAC</genome_strand>
        <mrna_strand>AGAATTGTAGAGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTGTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGATACTCTTCGTTTTTCTTCTCTTTTGTTAAGCAACCAATTCATTGGTGATTAAGTCTACATGTC-ATGGAACTCAACCAATTTTTATTGTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACTGAAGATAAAATTAAATTCGCTTTCCTAAATTAAAAAGAAAAAAAAGATGGGGAGCAACATTGAGGATAACCAAGATGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361561" ref_strand="+" ref_description="SGN-E361561 [cLPP-6-J5]">
      <seq>atagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaagaaaaaaaagatggggagcaacattgaggataaccaagatgatgttcccatggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20630" stop="19622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20330" g_stop="19922" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E361561" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20330" e_stop="19922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATGGGGAGCAACATTGAGGATAACCAAGAAGATGTTCCCATGGAGC</genome_strand>
        <mrna_strand>ATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAGAAAAAAAAGATGGGGAGCAACATTGAGGATAACCAAGATGATGTTCCCATGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747278" ref_strand="+" ref_description="SGN-E747278 [GI|47104684]">
      <seq>atcaacttcatagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20639" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20339" g_stop="19965" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E747278" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20339" e_stop="19965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATG</genome_strand>
        <mrna_strand>ATCAACTTCATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362850" ref_strand="+" ref_description="SGN-E362850 [cLPP-2-L15]">
      <seq>tcaacttcatagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20638" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20338" g_stop="19973" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E362850" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20338" e_stop="19973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGA</genome_strand>
        <mrna_strand>TCAACTTCATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373718" ref_strand="+" ref_description="SGN-E373718 [TUS-33-M22]">
      <seq>tcaacttcatagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20638" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20338" g_stop="19973" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E373718" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20338" e_stop="19973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAGA</genome_strand>
        <mrna_strand>TCAACTTCATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373717" ref_strand="+" ref_description="SGN-E373717 [TUS-33-M22](-)">
      <seq>atcaacttcatagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttttcaaaacaaacaaacaaaagataaaattaaattcgttttcataaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20639" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20339" g_stop="19974" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E373717" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20339" e_stop="19974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAAC--A-AAACAAAA-A-AAAATTAAAATCGTTTTCATAAATTAAAAAAAAG</genome_strand>
        <mrna_strand>ATCAACTTCATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAACAAACAAAAGATAAAATTAAATTCGTTTTCATAAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361296" ref_strand="+" ref_description="SGN-E361296 [cLPP-15-O15]">
      <seq>ggattttgatctcgaactcaatcaatcatacaaatttcctagttgattgagttctgtggtgttttgatctcaaactcaatcaatcattcatttgcatttcgttggtgtctccctcctacgtttctcttcgtttttcttctctttttttaagcaaccaattcattggtgattaagtttacatgtcatggaactcaaccaatttttattttgcttgatttgatcagcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20555" stop="19725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20255" g_stop="20025" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E361296" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20255" e_stop="20025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTT</genome_strand>
        <mrna_strand>GGATTTTGATCTCGAACTCAATCAATCATACAAATTTCCTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCAAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCTCCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTC-ATGGAACTCAACCAATTTTTATTTTGCTTGATTTGATCAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359825" ref_strand="+" ref_description="SGN-E359825 [cLPP-9-A20]">
      <seq>aacttcatagattggtgtaataagagaattgtagtgttgggaaacgcttttgcgaaaattttgtaattgattgagttttgaggattttgatctcgaactcaatcaatcatacaaatttcgtagttgattgagttctgtggtgttttgatctcgaactcaatcaatcattcatttgcatttcgttggtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="20636" stop="19847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20336" g_stop="20147" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E359825" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20336" e_stop="20147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTC</genome_strand>
        <mrna_strand>AACTTCATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGATTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGTGGTGTTTTGATCTCGAACTCAATCAATCATTCATTTGCATTTCGTTGGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747046" ref_strand="+" ref_description="SGN-E747046 [GI|84574986]">
      <seq>atatatgaaatttttccaaaatataatatgaacccaattatataaacccgctcaaatttgaaatctccccaaatccccatttctgacaccattacagaggtgaagcaccgagctcgaactctctccagattctctctacaagaagatccatttccagctgatggagaggaaaactccaaatagaacaaggaggaagcagagaagcaaccaaaaaagcaagaagaggatgaacaagggttcactgtctaggcatttcactgttgggattgcaaaacctccgcttcctaatcaacaacagcttcattcctcactttctaatgttactttaccgaatccttctagattccagaaacttctggattctgatgaccttccgccagctcaatctcagttctcttcagttttgccgttgaatctcgatgctgatgatgatgccgatgttgccgatgttgctgaaaaggacttcattctcagtcaagatttcttctgtaccccggattatctaacgccagatgcacctgcaatttgtaatgggcttgatggtgataaggatgattatactccttgtcccaaatcacccgagaagcttctaagtgtatcaagaaagaggccgcgactagcgtcggtaaggccttttagttccgatttatctggacagcagcagccagtagatattcctacagatacttttgggacagacgaaatgaaatcagaaaagataagcgagtcagaaaagggtcccagttatgtgtcacaatctgctattgctttaagatatcgagtcatgcctcctccgtgcattagaaacccttatctcggggatgcttccgagatagatgctgatccttttggtaacaggagatccaagtacccaggttttaaccctgcaatttctggtaatgatggtctgtcacggtatcgtactgatttccacgaaattgagcaaatcggtagtgggaacttcagccgtgttttcaaagtctttaagagaattgatggatgtatgtatgcagtgaaacatagcactaaacagttacatcaagacacagataggagacaggctttgatggaagtgcaagcattggctgctttaggacctcatgagaacgtagttggttattattcatcttggtttgaaaatgaacacctttacatccaaatggagctctgtgaccacagcttatccaataaaaaatattgtaaactattttcggaggtagaagttttggaagcaatgtatcaggtagccaacgcattgcagtttatacatcagagaggggtcgctcatttagatgtaaagccagataatatttatgtgaaaaatggtgtatataagcttggtgattttggatgtgcaactcttcttgataagagccagccaattgaagagggtgatgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattagagggtcttcactgccagaatcagggcctcattttctaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatctactcaaggcaatgatggacccagatccaacacgtcgtccttctgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttctgggatttgtcgattgctacttttgccaaagatccagaattcaaagctgcagtatctcatgcagcattctggtgttgacctatagccatttcttaaatagagataaagcttcatgcaccaaattttcccattttgatggtgccacttttgccaaatattatatcaagaatgtaatgttgtatcctaattgacctgcaaactgtggtttgtatgtcaaaatatggtatttggtggcttttaagctgattaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="30795" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30495" g_stop="30007" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30006" i_stop="29593" i_length="414">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29592" g_stop="29532" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="550" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29531" i_stop="29431" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29430" g_stop="29361" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="620" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29360" i_stop="28907" i_length="454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28906" g_stop="28652" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="875" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28651" i_stop="28493" i_length="159">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28492" g_stop="28425" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="943" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28424" i_stop="28338" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28337" g_stop="28228" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1053" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28227" i_stop="27799" i_length="429">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27798" g_stop="27758" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1054" r_stop="1094" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27757" i_stop="27666" i_length="92">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27665" g_stop="27517" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1095" r_stop="1243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27516" i_stop="26621" i_length="896">
            <donor d_prob="0.045" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26620" g_stop="26267" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1244" r_stop="1597" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25995" g_stop="25625" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1598" r_stop="1967" r_length="370" r_score="0.997"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25624" i_stop="25102" i_length="523">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25101" g_stop="25079" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1968" r_stop="1990" r_length="23" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E747046" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1991</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30495" e_stop="30007"/>
          <exon e_start="29592" e_stop="29532"/>
          <exon e_start="29430" e_stop="29361"/>
          <exon e_start="28906" e_stop="28652"/>
          <exon e_start="28492" e_stop="28425"/>
          <exon e_start="28337" e_stop="28228"/>
          <exon e_start="27798" e_stop="27758"/>
          <exon e_start="27665" e_stop="27517"/>
          <exon e_start="26620" e_stop="26267"/>
          <exon e_start="25995" e_stop="25625"/>
          <exon e_start="25101" e_stop="25079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGAAATTTTTCCAAAATATAATATGAACCCAATTATATAAACCCGCTCAAATTTGAAATCTCCCCAAATCCCCATTTCTGACACCATTACAGAGGTGAAGCACCGAGCTCGAACTCTCTCCAGATTCTCTCTACAAGAAGATCCATTTCCAGCTGATGGAGAGGAAAACTCCAAATAGAACAAGGAGGAAGCAGAGAAGCAACCAAAAAAGCAAGAAGAGGATGAACAAGGGTTCACTGTCTAGGCATTTCACTGTTGGGATTGCAAAACCTCCGCTTCCTAATCAACAACAGCTTCATTCCTCACTTTCTAATGTTACTTTACCGAATCCTTCTAGATTCCAGAAACTTCTGGATTCTGATGACCTTCCGCCAGCTCAATCTCAGTTCTCTTCAGTTTTGCCGTTGAATCTCGATGCTGATGATGATGCCGATGTTGCCGATGTTGCTGAAAAGGACTTCATTCTCAGTCAAGATTTCTTCTGGTAAATCTTTTTTCCCTTTTTTTTTCGATTAGAAGGATATGGGTTTGAATGGAATAAGATGTAGAGTAGCCACTGAGATTTGAACTGGTTCCGATTGTGCCCTTTTTTTGGTCCCTTGATGTTCCATATGAGACCGGGAACTGATTAAGGTGTAATAAGTTGATTGCTTACTGTTCAATTTTATATTGGTTAGGTTTTGTTTTTTAACTTTTACCCCCAATTCCTGATCGTATCTTGGTATTGGTGAATCTTAGTAGCTTAGTTGGTTCACTAACTTAACTTGCACCTTGTTGGTAAGGGTTTGATTCCCAACTTGTAATCTCCTCCCCCGATTTTATAAATATAAAAGATCATATATTCACATTGTATCCTCTAGTTTTGTTTTCTGCTTATAAATAATTTTTTGGAATGCAGTACCCCGGATTATCTAACGCCAGATGCACCTGCAATTTGTAATGGGCTTGATGGTGATAAGGTAATTTCTTTACCAGAGTGTTAAAAATTGTGACTTTTTTTCTCTATGACAGGCTGTAGTTTCAGTATGTCATACTGTGCGTTTCCCTCTATTTCTTTTAGGATGATTATACTCCTTGTCCCAAATCACCCGAGAAGCTTCTAAGTGTATCAAGAAAGAGGCCGCGACTAGGTATGAAATATTTCGTACTTTGGTGTCCATTTTACTTCATTTTTCATTTGTGGAATCGTTACTGGCTCTGTCAAGTTTTTAACTTTTATCATGTAAATTCTCTTCTTTCTTTTCTTATATTTGTTCTACTATTGAGGCATGACAAAGGCGTCGAGTAAGGTAAGGGGACAAACTAATAGCACATTCGGATATTGAAGAAAATTAGAACAGAATAATCTCTGAAAGTTTAAGAAACTATATTGTGTATGAATATCCCTTGCATTATCAAGCTTCTATTTTTAGCCGTTCTTTTTGTTACTGTTGGACACCTTTGAATCTGGAGATCTCTTTCTCTCTCTCTCTCCACTTTAGCATGTTTTGAAGTTTGTTGTTTGCACAATTATCTTCCATAATTAATCGTAAAGTTGTAAATTAACTTTCTTATGTGGTCCTTTCGTGATGCCCATCTTTACAGCGTCGGTAAGGCCTTTTAGTTCCGATTTATCTGGACAGCAGCAGCCAGTAGATATTCCTACAGATACTTTTGGGACAGACGAAATGAAATCAGAAAAGATAAGCGAGTCAGAAAAGGGTCCCAGTTATGTGTCACAATCTGCTATTGCTTTAAGATATCGAGTCATGCCTCCTCCGTGCATTAGAAACCCTTATCTCGGGGATGCTTCCGAGATAGATGCTGATCCTTTTGGTAACAGGAGATCCAAGTACCCAGGTACTGGTCAGTGAGTTTGAATAATTGGTGGATTCTATTTTCTTTGGAACAATTTAGTACTTCAAAAGAAAATTAGAGTGTGATCTTTTGTTCTTCATGGCAGAATTATTGTGTTGTTTTCTGTTAAGTTCCTGATGTTACTCTTTCTTTGATCTGTAGGTTTTAACCCTGCAATTTCTGGTAATGATGGTCTGTCACGGTATCGTACTGATTTCCACGAAATTGAGGCATGTTTTGATGCGTGTATTCTTGACTCCTACTAATACTTTCTTAAATTTTTTTCTGGACCTATCTAAGACCCTTCATTCTTTCAGCAAATCGGTAGTGGGAACTTCAGCCGTGTTTTCAAAGTCTTTAAGAGAATTGATGGATGTATGTATGCAGTGAAACATAGCACTAAACAGTTACATCAAGACACAGATAGGTGATATTTCCTTTCTTTCAACACTCTGGCCTTTATGGTATGACACTACAGAGTGTGCATATTTTTCTTGACATATCATATAACTAAAAGAAACATTTCCTTAGTTATTTTCTGATATCCTGTTGGCCATATAATTGGTAGCATCTAATATCAGTGGAAGTTTGGGGTGAGGCTTTAGTGGTATTGCTATGGGGTTTGCATGATATACGAATTAAGAATGCAATAGGAAATGTTCTACATCTATAATTTATGTGTACTGTTTCTTACATTTGGCATACTGTGTTTTCTCCAAGTCAAACATTTTCAATAGATTTGAGCACGTATTTTTGGACAATGTCTTCATAAGGTGAATCTTATGTGATGCCAAGCATGCTGTTTATATTCAATATAGTTCAGTCCTACTTATGCATTTAAATTGTGTTCTTCCAGGAGACAGGCTTTGATGGAAGTGCAAGCATTGGCTGCTTTAGGTAGCATGCTGATCTACTTCTGTTCCTGATATTATTATTTGAACTACCCCAGAGATTATTGTTCAAACATGTTTTGTTATTTATACTTACAGGACCTCATGAGAACGTAGTTGGTTATTATTCATCTTGGTTTGAAAATGAACACCTTTACATCCAAATGGAGCTCTGTGACCACAGCTTATCCAATAAAAAATATTGTAAACTATTTTCGGAGGTAGAAGTTTTGGAAGCAATGTATCAGGTGCGGCTCTTGTTGGAATCTTTAAGAGCTACTTTGTGTCATGTACTGAGTATGACTGTCTTATAAGTCTGAAATAAAGTTAGAAGGAAGATATATATCTTGCAAACCAATTATAATTCATCGACCAAAGAGATAATTTCTTACTATATACATAACCAATGAGCATATCATCAATCATGAAACTTCAACTGCTAAAATAACTGTGATTTCTATCTGTTATTTAGGGAAAACAACTGTAGCAAAGTCAGAACCTAATCCACCCTCCTAATACTTGAAACATGGAGCACACAAGATGCAACACTTCATAATGTTTTAAGGTTTTCATGGAAATACAATATTCAGATCTAGTTCCATTTTGTTATTTACATTGGTAGGTTGTACTTTTGTAACTTGATTCTCATTCAAATGCATATAATATTACCCAAAAATCCTGCATTGAGTTGGTGCTTGTTGCTTTCACACGAGAAAAGAGGATCAGACTATAGGCTGTATAAAAAAAGAAAAAGAGAGGATCAGTTTTATATCTGTTATAGAAGCTGATACCATTGACTGTATATGTGATCCAAATAACCCTCTTTGAGGTGGTAGGGGAGCTGTTTTATATCATGTATCTTAGGATTTATTACTATCCTCTAGCTTGAGATATGACTGGAACTGGCTTTCAATTTTGAGAGGCCGAAGACCTGTATAGTAAACTATTTTGAGCTTTTAGTCGTGATCTTCTTCAAAATGCTTAAGAGTTCACCCTCTACTAACTTCATTTGCTTTTGACTTCCCTTTGCTTGTTTTTGTTCGTGTATCTGGGTATTTTATTTGTGGGGTGGGAAGGCTGAGGAAACATGGTTGTTCAAATTGAGGTCAAAATATTGATACTTGAGATGCTTTCTGATATGCAGGTAGCCAACGCATTGCAGTTTATACATCAGAGAGGGGTCGCTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAATTCAGTATTGGTTTTTGGTTTTGGTAACTCAGATTTGTATTAATCACCAGTAAAATAATTACATAAACATGGCAAGTTTAGACTCACTTGCTATTTCTCAAGATGGAAAATACTACAAAACTCAACAGGAAATTACGGTTTCCCATTTAAAATCGCTGTGAAACTCATTAATTTATCTCATATTTATCTTAAAATTATCTAATACATTTGTTTATATAATCATATTATTTATTTTTAGGCATGTGATTTTATACAGCGACATCAAATCATAAAATGAAATCGGACATGCAATTTCATATCACATGAATTTTTCAAAAATCATGATTTTGAGATTATTTAATTACATTTGAGTTTGTTTGACATTGATGTTAAAAAACATTTTTAGAAGCACTTTTTAAAAATGCCTTTTTAGAAAAGTGCTTTAGAAAAAAAGCAATTTGTTTGGCTTATTCATTTGAAAAATGAGCAAATTGTGTATGATTAAATATCTTTTTTTCAGAAATGCTTTTAATAGTCAAATTACCAAAAAAAAAAAAAAAAGGACAA</genome_strand>
        <mrna_strand>ATATATGAAATTTTTCCAAAATATAATATGAACCCAATTATATAAACCCGCTCAAATTTGAAATCTCCCCAAATCCCCATTTCTGACACCATTACAGAGGTGAAGCACCGAGCTCGAACTCTCTCCAGATTCTCTCTACAAGAAGATCCATTTCCAGCTGATGGAGAGGAAAACTCCAAATAGAACAAGGAGGAAGCAGAGAAGCAACCAAAAAAGCAAGAAGAGGATGAACAAGGGTTCACTGTCTAGGCATTTCACTGTTGGGATTGCAAAACCTCCGCTTCCTAATCAACAACAGCTTCATTCCTCACTTTCTAATGTTACTTTACCGAATCCTTCTAGATTCCAGAAACTTCTGGATTCTGATGACCTTCCGCCAGCTCAATCTCAGTTCTCTTCAGTTTTGCCGTTGAATCTCGATGCTGATGATGATGCCGATGTTGCCGATGTTGCTGAAAAGGACTTCATTCTCAGTCAAGATTTCTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCGGATTATCTAACGCCAGATGCACCTGCAATTTGTAATGGGCTTGATGGTGATAAG.....................................................................................................GATGATTATACTCCTTGTCCCAAATCACCCGAGAAGCTTCTAAGTGTATCAAGAAAGAGGCCGCGACTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGGTAAGGCCTTTTAGTTCCGATTTATCTGGACAGCAGCAGCCAGTAGATATTCCTACAGATACTTTTGGGACAGACGAAATGAAATCAGAAAAGATAAGCGAGTCAGAAAAGGGTCCCAGTTATGTGTCACAATCTGCTATTGCTTTAAGATATCGAGTCATGCCTCCTCCGTGCATTAGAAACCCTTATCTCGGGGATGCTTCCGAGATAGATGCTGATCCTTTTGGTAACAGGAGATCCAAGTACCCAG...............................................................................................................................................................GTTTTAACCCTGCAATTTCTGGTAATGATGGTCTGTCACGGTATCGTACTGATTTCCACGAAATTGAG.......................................................................................CAAATCGGTAGTGGGAACTTCAGCCGTGTTTTCAAAGTCTTTAAGAGAATTGATGGATGTATGTATGCAGTGAAACATAGCACTAAACAGTTACATCAAGACACAGATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGGCTTTGATGGAAGTGCAAGCATTGGCTGCTTTAG............................................................................................GACCTCATGAGAACGTAGTTGGTTATTATTCATCTTGGTTTGAAAATGAACACCTTTACATCCAAATGGAGCTCTGTGACCACAGCTTATCCAATAAAAAATATTGTAAACTATTTTCGGAGGTAGAAGTTTTGGAAGCAATGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAACGCATTGCAGTTTATACATCAGAGAGGGGTCGCTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCT-TAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747070" ref_strand="+" ref_description="SGN-E747070 [GI|55859437]">
      <seq>atatatgaaatttttccaaaatataatatgaacccaattatataaacccgctcaaatttgaaatctccccaaatccccatttctgacaccattacagaggtgaagcaccgagctcgaactctctccagattctctctacaagaagatccatttccagctgatggagaggaaaactccaaatagaacaaggaggaagcagagaagcaaccaaaaaagcaagaagaggatgaacaagggttcactgtctaggcatttcactgttgggattgcaaaacctccgcttcctaatcaacaacagcttcattcctcactttctaatgttactttaccgaatccttctagattccagaaacttctggattctgatgaccttccgccagctcaatctcagttctcttcagttttgccgttgaatctcgatgctgatgatgatgccgatgttgccgatgttgctgaaaaggacttcattctcagtcaagatttcttctgtaccccggattatctaacgccagatgcacctgcaatttgtaatgggcttgatggtgataaggatgattatactccttgtcccaaatcacccgagaagcttctaagtgtatcaagaaagaggccgcgactagcgtcggtaaggccttttagttccgatttatctggacagcagcagccagtagatattcctacagatacttttgggacagacgaaatgaaatcagaaaagataagcgagtcagaaaagggtcccagttatgtgtcacaatctgctattgctttaagatatcgagtcatgcctcctccgtgcattagaaacccttatctcggggatgcttccgagatagatgctgatccttttggtaacaggagatccaagtacccaggttttaaccctgcaatttctggtaatgatggtctgtcacggtatcgtactgatttccacgaaattgagcaaatcggtagtgggaacttcagccgtgttttcaaagtctttaagagaattgatggatgtatgtatgcagtgaaacatagcactaaacagttacatcaagacacagataggagacaggctttgatggaagtgcaagcattggctgctttaggacctcatgagaacgtagttggttattattcatcttggtttgaaaatgaacacctttacatccaaatggagctctgtgaccacagcttatccaataaaaaatattgtaaactattttcggaggtagaagttttggaagcaatgtatcaggtagccaacgcattgcagtttatacatcagagaggggtcgctcatttagatgtaaagccagataatatttatgtgaaaaatggtgtatataagcttggtgattttggatgtgcaactcttcttgataagagccagccaattgaagagggtgatgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattagagggtcttcactgccagaatcagggcctcattttctaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatctactcaaggcaatgatggacccagatccaacacgtcgtccttctgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttctgggatttgtcgattgctacttttgccaaagatccagaattcaaagctgcagtatctcatgcagcattctggtgttgacctatagccatttctgtaaatagagataaagcttcatgcaccaaattttcccattttgatggtgccacttttgccaaatattatatcaagaatgtaatgttgtatcctaattgacctgcaaactgtggtttgtatgtcaaaatatggtatttggtggcttttaagctgattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="30795" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30495" g_stop="30007" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30006" i_stop="29593" i_length="414">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29592" g_stop="29532" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="550" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29531" i_stop="29431" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29430" g_stop="29361" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="620" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29360" i_stop="28907" i_length="454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28906" g_stop="28652" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="875" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28651" i_stop="28493" i_length="159">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28492" g_stop="28425" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="943" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28424" i_stop="28338" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28337" g_stop="28228" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1053" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28227" i_stop="27799" i_length="429">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27798" g_stop="27758" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1054" r_stop="1094" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27757" i_stop="27666" i_length="92">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27665" g_stop="27517" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1095" r_stop="1243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27516" i_stop="26621" i_length="896">
            <donor d_prob="0.045" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26620" g_stop="26267" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1244" r_stop="1597" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25995" g_stop="25626" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1598" r_stop="1967" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25625" i_stop="25102" i_length="524">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25101" g_stop="25079" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1968" r_stop="1990" r_length="23" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E747070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1990</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30495" e_stop="30007"/>
          <exon e_start="29592" e_stop="29532"/>
          <exon e_start="29430" e_stop="29361"/>
          <exon e_start="28906" e_stop="28652"/>
          <exon e_start="28492" e_stop="28425"/>
          <exon e_start="28337" e_stop="28228"/>
          <exon e_start="27798" e_stop="27758"/>
          <exon e_start="27665" e_stop="27517"/>
          <exon e_start="26620" e_stop="26267"/>
          <exon e_start="25995" e_stop="25626"/>
          <exon e_start="25101" e_stop="25079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGAAATTTTTCCAAAATATAATATGAACCCAATTATATAAACCCGCTCAAATTTGAAATCTCCCCAAATCCCCATTTCTGACACCATTACAGAGGTGAAGCACCGAGCTCGAACTCTCTCCAGATTCTCTCTACAAGAAGATCCATTTCCAGCTGATGGAGAGGAAAACTCCAAATAGAACAAGGAGGAAGCAGAGAAGCAACCAAAAAAGCAAGAAGAGGATGAACAAGGGTTCACTGTCTAGGCATTTCACTGTTGGGATTGCAAAACCTCCGCTTCCTAATCAACAACAGCTTCATTCCTCACTTTCTAATGTTACTTTACCGAATCCTTCTAGATTCCAGAAACTTCTGGATTCTGATGACCTTCCGCCAGCTCAATCTCAGTTCTCTTCAGTTTTGCCGTTGAATCTCGATGCTGATGATGATGCCGATGTTGCCGATGTTGCTGAAAAGGACTTCATTCTCAGTCAAGATTTCTTCTGGTAAATCTTTTTTCCCTTTTTTTTTCGATTAGAAGGATATGGGTTTGAATGGAATAAGATGTAGAGTAGCCACTGAGATTTGAACTGGTTCCGATTGTGCCCTTTTTTTGGTCCCTTGATGTTCCATATGAGACCGGGAACTGATTAAGGTGTAATAAGTTGATTGCTTACTGTTCAATTTTATATTGGTTAGGTTTTGTTTTTTAACTTTTACCCCCAATTCCTGATCGTATCTTGGTATTGGTGAATCTTAGTAGCTTAGTTGGTTCACTAACTTAACTTGCACCTTGTTGGTAAGGGTTTGATTCCCAACTTGTAATCTCCTCCCCCGATTTTATAAATATAAAAGATCATATATTCACATTGTATCCTCTAGTTTTGTTTTCTGCTTATAAATAATTTTTTGGAATGCAGTACCCCGGATTATCTAACGCCAGATGCACCTGCAATTTGTAATGGGCTTGATGGTGATAAGGTAATTTCTTTACCAGAGTGTTAAAAATTGTGACTTTTTTTCTCTATGACAGGCTGTAGTTTCAGTATGTCATACTGTGCGTTTCCCTCTATTTCTTTTAGGATGATTATACTCCTTGTCCCAAATCACCCGAGAAGCTTCTAAGTGTATCAAGAAAGAGGCCGCGACTAGGTATGAAATATTTCGTACTTTGGTGTCCATTTTACTTCATTTTTCATTTGTGGAATCGTTACTGGCTCTGTCAAGTTTTTAACTTTTATCATGTAAATTCTCTTCTTTCTTTTCTTATATTTGTTCTACTATTGAGGCATGACAAAGGCGTCGAGTAAGGTAAGGGGACAAACTAATAGCACATTCGGATATTGAAGAAAATTAGAACAGAATAATCTCTGAAAGTTTAAGAAACTATATTGTGTATGAATATCCCTTGCATTATCAAGCTTCTATTTTTAGCCGTTCTTTTTGTTACTGTTGGACACCTTTGAATCTGGAGATCTCTTTCTCTCTCTCTCTCCACTTTAGCATGTTTTGAAGTTTGTTGTTTGCACAATTATCTTCCATAATTAATCGTAAAGTTGTAAATTAACTTTCTTATGTGGTCCTTTCGTGATGCCCATCTTTACAGCGTCGGTAAGGCCTTTTAGTTCCGATTTATCTGGACAGCAGCAGCCAGTAGATATTCCTACAGATACTTTTGGGACAGACGAAATGAAATCAGAAAAGATAAGCGAGTCAGAAAAGGGTCCCAGTTATGTGTCACAATCTGCTATTGCTTTAAGATATCGAGTCATGCCTCCTCCGTGCATTAGAAACCCTTATCTCGGGGATGCTTCCGAGATAGATGCTGATCCTTTTGGTAACAGGAGATCCAAGTACCCAGGTACTGGTCAGTGAGTTTGAATAATTGGTGGATTCTATTTTCTTTGGAACAATTTAGTACTTCAAAAGAAAATTAGAGTGTGATCTTTTGTTCTTCATGGCAGAATTATTGTGTTGTTTTCTGTTAAGTTCCTGATGTTACTCTTTCTTTGATCTGTAGGTTTTAACCCTGCAATTTCTGGTAATGATGGTCTGTCACGGTATCGTACTGATTTCCACGAAATTGAGGCATGTTTTGATGCGTGTATTCTTGACTCCTACTAATACTTTCTTAAATTTTTTTCTGGACCTATCTAAGACCCTTCATTCTTTCAGCAAATCGGTAGTGGGAACTTCAGCCGTGTTTTCAAAGTCTTTAAGAGAATTGATGGATGTATGTATGCAGTGAAACATAGCACTAAACAGTTACATCAAGACACAGATAGGTGATATTTCCTTTCTTTCAACACTCTGGCCTTTATGGTATGACACTACAGAGTGTGCATATTTTTCTTGACATATCATATAACTAAAAGAAACATTTCCTTAGTTATTTTCTGATATCCTGTTGGCCATATAATTGGTAGCATCTAATATCAGTGGAAGTTTGGGGTGAGGCTTTAGTGGTATTGCTATGGGGTTTGCATGATATACGAATTAAGAATGCAATAGGAAATGTTCTACATCTATAATTTATGTGTACTGTTTCTTACATTTGGCATACTGTGTTTTCTCCAAGTCAAACATTTTCAATAGATTTGAGCACGTATTTTTGGACAATGTCTTCATAAGGTGAATCTTATGTGATGCCAAGCATGCTGTTTATATTCAATATAGTTCAGTCCTACTTATGCATTTAAATTGTGTTCTTCCAGGAGACAGGCTTTGATGGAAGTGCAAGCATTGGCTGCTTTAGGTAGCATGCTGATCTACTTCTGTTCCTGATATTATTATTTGAACTACCCCAGAGATTATTGTTCAAACATGTTTTGTTATTTATACTTACAGGACCTCATGAGAACGTAGTTGGTTATTATTCATCTTGGTTTGAAAATGAACACCTTTACATCCAAATGGAGCTCTGTGACCACAGCTTATCCAATAAAAAATATTGTAAACTATTTTCGGAGGTAGAAGTTTTGGAAGCAATGTATCAGGTGCGGCTCTTGTTGGAATCTTTAAGAGCTACTTTGTGTCATGTACTGAGTATGACTGTCTTATAAGTCTGAAATAAAGTTAGAAGGAAGATATATATCTTGCAAACCAATTATAATTCATCGACCAAAGAGATAATTTCTTACTATATACATAACCAATGAGCATATCATCAATCATGAAACTTCAACTGCTAAAATAACTGTGATTTCTATCTGTTATTTAGGGAAAACAACTGTAGCAAAGTCAGAACCTAATCCACCCTCCTAATACTTGAAACATGGAGCACACAAGATGCAACACTTCATAATGTTTTAAGGTTTTCATGGAAATACAATATTCAGATCTAGTTCCATTTTGTTATTTACATTGGTAGGTTGTACTTTTGTAACTTGATTCTCATTCAAATGCATATAATATTACCCAAAAATCCTGCATTGAGTTGGTGCTTGTTGCTTTCACACGAGAAAAGAGGATCAGACTATAGGCTGTATAAAAAAAGAAAAAGAGAGGATCAGTTTTATATCTGTTATAGAAGCTGATACCATTGACTGTATATGTGATCCAAATAACCCTCTTTGAGGTGGTAGGGGAGCTGTTTTATATCATGTATCTTAGGATTTATTACTATCCTCTAGCTTGAGATATGACTGGAACTGGCTTTCAATTTTGAGAGGCCGAAGACCTGTATAGTAAACTATTTTGAGCTTTTAGTCGTGATCTTCTTCAAAATGCTTAAGAGTTCACCCTCTACTAACTTCATTTGCTTTTGACTTCCCTTTGCTTGTTTTTGTTCGTGTATCTGGGTATTTTATTTGTGGGGTGGGAAGGCTGAGGAAACATGGTTGTTCAAATTGAGGTCAAAATATTGATACTTGAGATGCTTTCTGATATGCAGGTAGCCAACGCATTGCAGTTTATACATCAGAGAGGGGTCGCTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAATTCAGTATTGGTTTTTGGTTTTGGTAACTCAGATTTGTATTAATCACCAGTAAAATAATTACATAAACATGGCAAGTTTAGACTCACTTGCTATTTCTCAAGATGGAAAATACTACAAAACTCAACAGGAAATTACGGTTTCCCATTTAAAATCGCTGTGAAACTCATTAATTTATCTCATATTTATCTTAAAATTATCTAATACATTTGTTTATATAATCATATTATTTATTTTTAGGCATGTGATTTTATACAGCGACATCAAATCATAAAATGAAATCGGACATGCAATTTCATATCACATGAATTTTTCAAAAATCATGATTTTGAGATTATTTAATTACATTTGAGTTTGTTTGACATTGATGTTAAAAAACATTTTTAGAAGCACTTTTTAAAAATGCCTTTTTAGAAAAGTGCTTTAGAAAAAAAGCAATTTGTTTGGCTTATTCATTTGAAAAATGAGCAAATTGTGTATGATTAAATATCTTTTTTTCAGAAATGCTTTTAATAGTCAAATTACCAAAAAAAAAAAAAAAAGGACAA</genome_strand>
        <mrna_strand>ATATATGAAATTTTTCCAAAATATAATATGAACCCAATTATATAAACCCGCTCAAATTTGAAATCTCCCCAAATCCCCATTTCTGACACCATTACAGAGGTGAAGCACCGAGCTCGAACTCTCTCCAGATTCTCTCTACAAGAAGATCCATTTCCAGCTGATGGAGAGGAAAACTCCAAATAGAACAAGGAGGAAGCAGAGAAGCAACCAAAAAAGCAAGAAGAGGATGAACAAGGGTTCACTGTCTAGGCATTTCACTGTTGGGATTGCAAAACCTCCGCTTCCTAATCAACAACAGCTTCATTCCTCACTTTCTAATGTTACTTTACCGAATCCTTCTAGATTCCAGAAACTTCTGGATTCTGATGACCTTCCGCCAGCTCAATCTCAGTTCTCTTCAGTTTTGCCGTTGAATCTCGATGCTGATGATGATGCCGATGTTGCCGATGTTGCTGAAAAGGACTTCATTCTCAGTCAAGATTTCTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCGGATTATCTAACGCCAGATGCACCTGCAATTTGTAATGGGCTTGATGGTGATAAG.....................................................................................................GATGATTATACTCCTTGTCCCAAATCACCCGAGAAGCTTCTAAGTGTATCAAGAAAGAGGCCGCGACTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGGTAAGGCCTTTTAGTTCCGATTTATCTGGACAGCAGCAGCCAGTAGATATTCCTACAGATACTTTTGGGACAGACGAAATGAAATCAGAAAAGATAAGCGAGTCAGAAAAGGGTCCCAGTTATGTGTCACAATCTGCTATTGCTTTAAGATATCGAGTCATGCCTCCTCCGTGCATTAGAAACCCTTATCTCGGGGATGCTTCCGAGATAGATGCTGATCCTTTTGGTAACAGGAGATCCAAGTACCCAG...............................................................................................................................................................GTTTTAACCCTGCAATTTCTGGTAATGATGGTCTGTCACGGTATCGTACTGATTTCCACGAAATTGAG.......................................................................................CAAATCGGTAGTGGGAACTTCAGCCGTGTTTTCAAAGTCTTTAAGAGAATTGATGGATGTATGTATGCAGTGAAACATAGCACTAAACAGTTACATCAAGACACAGATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGGCTTTGATGGAAGTGCAAGCATTGGCTGCTTTAG............................................................................................GACCTCATGAGAACGTAGTTGGTTATTATTCATCTTGGTTTGAAAATGAACACCTTTACATCCAAATGGAGCTCTGTGACCACAGCTTATCCAATAAAAAATATTGTAAACTATTTTCGGAGGTAGAAGTTTTGGAAGCAATGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAACGCATTGCAGTTTATACATCAGAGAGGGGTCGCTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392855" ref_strand="+" ref_description="SGN-E392855 [TUS-36-B8](-)">
      <seq>atgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattagagggttttcactgccagaatcagggcctcattttttaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatttactcaaggcaatgatggacccagatccaacacgttgtccttttgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttttgggatttgtcgattgctacttttgccaaagatccagaattcaaagctgcagtatttcatgcagcattttggtgttgacctatagccatttttgtaaatagagataaagcttcatgcaccaaattttcccattttgatggtgccacttttgccaaatattatatcaagaatgaaaagttgtatcctaattgacctgcaaactgtggtttgtatgtcaaaatatggtatttggtggcttttaaaaaaagtaattcagtattggtttttggttttggtaaaaaaaaaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="26769" stop="25298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26469" g_stop="26267" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25995" g_stop="25602" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="597" r_length="394" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="626"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E392855" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26469" e_stop="26267"/>
          <exon e_start="25995" e_stop="25602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAATTCAGTATTGGTTTTTGGTTTTG</genome_strand>
        <mrna_strand>ATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTTTTCACTGCCAGAATCAGGGCCTCATTTTTTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATTTACTCAAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTTGTCCTTTTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTTTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATTTCATGCAGCATTTTGGTGTTGACCTATAGCCATTTTTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGAAAAGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAAAAAAGTAATTCAGTATTGGTTTTTGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392749" ref_strand="+" ref_description="SGN-E392749 [TUS-36-B8]">
      <seq>cttttttagatgtaaagccagataatatttatgtgaaaaatggtgtatataagcttggtgattttggatgtgcaactcttcttgataagagccagccaattgaagagggtgatgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattatagggttttttttgccagaatcatgttttcattttctaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatctattctaggcaatgatggacccagatccaacacgtcgtccttctgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttctgggatttgtcgattgctacttttgccaaagatccagaattcaaagctgcagtatctcatgcagcattctggtgttgacctatagccatttctgtaaatagagataaagcttcatgcaccaaattttcccattttgatggtgccacttttgccaaatattatatcaagaatgtaatgttgtatcctaattgacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="26880" stop="25378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26580" g_stop="26267" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25995" g_stop="25678" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="632" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E392749" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26580" e_stop="26267"/>
          <exon e_start="25995" e_stop="25678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCA</genome_strand>
        <mrna_strand>CTTTTTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTATAGGGTTTTTTTTGCCAGAATCATGTTTTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTATTCTAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240536" ref_strand="+" ref_description="SGN-E240536 [cLED-21-I17]">
      <seq>tcatttagatgtaaagccagataatatttatgtgaaaaatggtgtatataagcttggtgattttggatgtgcaactcttcttgataagagccagccaattgaagagggtgatgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattagagggtcttcactgccagaatcagggcctcattttctaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatctactcaaggcaatgatggacccagatccaacacgtcgtccttctgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttctgggatttgtcgattgctactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="26879" stop="25552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26579" g_stop="26267" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25995" g_stop="25852" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="457" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E240536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26579" e_stop="26267"/>
          <exon e_start="25995" e_stop="25852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTT</genome_strand>
        <mrna_strand>TCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240651" ref_strand="+" ref_description="SGN-E240651 [cLED-21-P16]">
      <seq>tcatttagatgtaaagccagataatatttatgtgaaaaatggtgtatataagcttggtgattttggatgtgcaactcttcttgataagagccagccaattgaagagggtgatgcacgttatatgccccaagaaatacttaatgagaactatgatcatcttgacaaagttgacatattctccttgggcgctgcaatatatgaacttattagagggtcttcactgccagaatcagggcctcattttctaaacctcagggaggggaaattgcctcttcttccgggtcactccttgcaatttcagaatctactcaaggcaatgatggacccagatccaacacgtcgtccttctgcaaaaggcgttgtggataatccaatctttgaaagatggcaaagaaattccaacaagtagatatccatgtaaatcactgttttctgggatttgtcgattgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="26879" stop="25553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26579" g_stop="26267" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25995" g_stop="25853" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="456" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E240651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26579" e_stop="26267"/>
          <exon e_start="25995" e_stop="25853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAGGTATTAACTTCTTCCCTTTTACTATGTTAAAAAGTCTCTGGATTTGTATTTTCCTTTATGCTTCATGTTCATATGCCTTGATCATCTATCATCTTGTACAACCAGCACGCTATCTGAAGCACAATATTCCATATATTTTAATCCGAGTATATCTAAACTGTAGTTAGATGATATATTTCGTTTGTCTGTGGCTATGTATGATAACGCTAATCCATAGTCATCTGTAGAGGCAAATGCTAATTCTCTATGTCCAAATTGTAAATGTTCTCAGGCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTT</genome_strand>
        <mrna_strand>TCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG...............................................................................................................................................................................................................................................................................GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203072" ref_strand="+" ref_description="SGN-E203072 [cLEB-3-D15]">
      <seq>gcacgagcccaattagctccgcaaaattgcgtctctgcttgttaccagctatggaagagaaaggttcagctgctagtagagtatttcttcaggaaaaggaagattcgaaccagagtttttccgaagaggaagatatggacgatgacgaatggatgacaaatgacaattgttccttagaaaacaagggaggtttaggagtcctttcccagcttgaacggctcacagatgtcaaaagacttcatcattcaaccgatacagtgaactctgatcagctgcagaggcggacaggtttatgcgaagaagatgacgttgaagttcctttgtttaagagtcaggatggtagcctgatcaacataaatgatcaggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="31888" stop="34338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32178" g_stop="32272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32273" i_stop="32447" i_length="175">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32448" g_stop="32478" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="123" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32479" i_stop="32585" i_length="107">
            <donor d_prob="0.582" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32586" g_stop="32647" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="185" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32648" i_stop="33101" i_length="454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33102" g_stop="33141" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="225" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33142" i_stop="33251" i_length="110">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33252" g_stop="33301" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="275" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33302" i_stop="33943" i_length="642">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.216" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33944" g_stop="34038" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="370" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E203072" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32178" e_stop="32272"/>
          <exon e_start="32448" e_stop="32478"/>
          <exon e_start="32586" e_stop="32647"/>
          <exon e_start="33102" e_stop="33141"/>
          <exon e_start="33252" e_stop="33301"/>
          <exon e_start="33944" e_stop="34038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTGTTGCCCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAGGTATTTCGAGATTTTCCTAACAATTTTCATCATTTTGCTCAAAAATCGGAGATTATCTCATCAGTATTGTAGTTTTAGGTTACCTGCAATTGTTCAGACGATTTTTTGTGTTGATTTTGAATGAATTTCGATGTTTTCTGTAAAGTTGAACTTGATTTCCTCAATTATAATGCAGGAAAAGGAAGATTCGAACCAGAGTTTTTCCGGTACCTTTCTTCTCCTTGAAAGAAAGCTTCACAGTAATAACCTAGGTCTGTTTGTTTGTTTGTTTTAATTGAATCTGCTTTGCTTTGTTTTAAATTGTTATTGTTAGAAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAGGTAATGCCTAGTTAATTTTCTTGCTTACATTTTGAAATTCCTCGAGTTAAAACGTCAGCTGCCTTCTATAATGTTCTAGGTAAGCTGTTAATTTATTTTTAGTCTAAGACAAAATTTGTTTACTGTTAGCAGAATGGATATAGAGGAGTCGTATAGCCAATCCCAACTAATCTTATTGGCTGATTGATTGTTAAAATGTTATCACATAATTGTCTTGCTTACTATTCGTAGAAAAACAAATCTCAAAGTGGTTTGGAGGGTTAAGGTTTATGTTTTGGCTTTGATCGTTAGCAATTTAATTATAGTTGTGAGATTGAGTGTTTAGTGTTTATTCACAATGCAGGCATGTTCACTGCACACATTTCCTAGTTATCAGTGAACCCCTTATTTTGTATATGAATTTGCTGATGAATACTTTATAATGCCCAAGACTTGGATGTTTCTTGTTTGTCAGGGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAGGTATTCCCAATGAAACTTCTCCACTTGATTTTTCATTCATCAGCACCCCCCTGCAAAATATTCAAAAAGATAAGGACATTTGGGAAGTTATCCATGTTAATCTTCTGCAGATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTGGTACAGGTTTGAATTCACCTCCTTTTTTTTGTCATATGACCTACCTTCATTCCTTCTTTCTATTGTTCCTTTGGTCCTCGTCTTTTCCTCTCTGTTTTTTTTTTTTTTGGGGTTAGATATGTCTCAAATAGTTCCTAGTTGACTTTAATGGGTCATGGTGGTTAAGAATTCAACATGGAAATTGACTTTTTGATGGGGATTCCAAGAAAAAGTTGCTCTCCACTTCTCCCGTTTCTTTTGAATCGTTCAGTTTAAGGAACAACATGTTGGGCTAAAATAACCTGGAGATACTCTTAGCATGGTGTAATATCGTCCGCTTTGGGCCAAAAGTCGCACAGTTTTCCTAATAAGGGCTCAAACATTAAGAGTATCCATCCCTATACCTTTTATGTAGTTTCTTTTTCCTTTCAGCTACCAATGTGTGACTACCTTATCAGAAAAAAGAAAAAAAAATACCAACGTGGAACTTTGTTCATATACGCAACACATAGCTTATTAATTGATGGGGGAGGCCTGTATTAACATTATGTGTACCCCATCTACAAAAGGGATCTATTAGTAAGTGGAACTAGACAAAAATGATAAGCAGGAAAAAGTTCAGATGACAACTTCCTCTTACAGTTGCGGTTGCATTTTTGTCAGCAGAGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGG</genome_strand>
        <mrna_strand>GCAC-G-AG-CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAG...............................................................................................................................................................................GAAAAGGAAGATTCGAACCAGAGTTTTTCCG...........................................................................................................AAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG..............................................................................................................ATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACATAAATGATCAGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249136" ref_strand="+" ref_description="SGN-E249136 [cLEF-49-N16]">
      <seq>cccaattagctccgcaaaattgcgtctctgcttgttaccagcggtgggagagaaaggttcagctgctagtagagtatttcttcaggaaaaggaagattcgaaccagagtttttccgaagaggaagatatggacgatgacgaatggatgacaaatgacaattgttccttagaaaacaagggaggtttaggagtcctttcccagcttgaacggctcacagatgtcaaaagacttcatcattcaaccgatacagtgaactctgatcagctggtacagaggcggacaggtttatgcgaagaagatgacgttgaagttcctttgtttaagagtcaggatggtagcctgatcaacaaaaatgatcaggatggtagcttcatcaacaaaaatgatcattggaaggcgttgtcctgctccttagatgatgaattttgtcacgtcactagaattacatccacttgtgattcagaagaggaaattatgtctgatgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="31888" stop="34464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32188" g_stop="32272" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32273" i_stop="32447" i_length="175">
            <donor d_prob="0.870" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32448" g_stop="32478" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="116" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32479" i_stop="32585" i_length="107">
            <donor d_prob="0.582" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32586" g_stop="32647" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="178" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32648" i_stop="33101" i_length="454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33102" g_stop="33141" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="218" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33142" i_stop="33251" i_length="110">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33252" g_stop="33307" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33308" i_stop="33946" i_length="639">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33947" g_stop="34162" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="490" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E249136" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32188" e_stop="32272"/>
          <exon e_start="32448" e_stop="32478"/>
          <exon e_start="32586" e_stop="32647"/>
          <exon e_start="33102" e_stop="33141"/>
          <exon e_start="33252" e_stop="33307"/>
          <exon e_start="33947" e_stop="34162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAGGTATTTCGAGATTTTCCTAACAATTTTCATCATTTTGCTCAAAAATCGGAGATTATCTCATCAGTATTGTAGTTTTAGGTTACCTGCAATTGTTCAGACGATTTTTTGTGTTGATTTTGAATGAATTTCGATGTTTTCTGTAAAGTTGAACTTGATTTCCTCAATTATAATGCAGGAAAAGGAAGATTCGAACCAGAGTTTTTCCGGTACCTTTCTTCTCCTTGAAAGAAAGCTTCACAGTAATAACCTAGGTCTGTTTGTTTGTTTGTTTTAATTGAATCTGCTTTGCTTTGTTTTAAATTGTTATTGTTAGAAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAGGTAATGCCTAGTTAATTTTCTTGCTTACATTTTGAAATTCCTCGAGTTAAAACGTCAGCTGCCTTCTATAATGTTCTAGGTAAGCTGTTAATTTATTTTTAGTCTAAGACAAAATTTGTTTACTGTTAGCAGAATGGATATAGAGGAGTCGTATAGCCAATCCCAACTAATCTTATTGGCTGATTGATTGTTAAAATGTTATCACATAATTGTCTTGCTTACTATTCGTAGAAAAACAAATCTCAAAGTGGTTTGGAGGGTTAAGGTTTATGTTTTGGCTTTGATCGTTAGCAATTTAATTATAGTTGTGAGATTGAGTGTTTAGTGTTTATTCACAATGCAGGCATGTTCACTGCACACATTTCCTAGTTATCAGTGAACCCCTTATTTTGTATATGAATTTGCTGATGAATACTTTATAATGCCCAAGACTTGGATGTTTCTTGTTTGTCAGGGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAGGTATTCCCAATGAAACTTCTCCACTTGATTTTTCATTCATCAGCACCCCCCTGCAAAATATTCAAAAAGATAAGGACATTTGGGAAGTTATCCATGTTAATCTTCTGCAGATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTGGTACAGGTTTGAATTCACCTCCTTTTTTTTGTCATATGACCTACCTTCATTCCTTCTTTCTATTGTTCCTTTGGTCCTCGTCTTTTCCTCTCTGTTTTTTTTTTTTTTGGGGTTAGATATGTCTCAAATAGTTCCTAGTTGACTTTAATGGGTCATGGTGGTTAAGAATTCAACATGGAAATTGACTTTTTGATGGGGATTCCAAGAAAAAGTTGCTCTCCACTTCTCCCGTTTCTTTTGAATCGTTCAGTTTAAGGAACAACATGTTGGGCTAAAATAACCTGGAGATACTCTTAGCATGGTGTAATATCGTCCGCTTTGGGCCAAAAGTCGCACAGTTTTCCTAATAAGGGCTCAAACATTAAGAGTATCCATCCCTATACCTTTTATGTAGTTTCTTTTTCCTTTCAGCTACCAATGTGTGACTACCTTATCAGAAAAAAGAAAAAAAAATACCAACGTGGAACTTTGTTCATATACGCAACACATAGCTTATTAATTGATGGGGGAGGCCTGTATTAACATTATGTGTACCCCATCTACAAAAGGGATCTATTAGTAAGTGGAACTAGACAAAAATGATAAGCAGGAAAAAGTTCAGATGACAACTTCCTCTTACAGTTGCGGTTGCATTTTTGTCAGCAGAGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTCTGATGATGAG</genome_strand>
        <mrna_strand>CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCGGTGGGAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAG...............................................................................................................................................................................GAAAAGGAAGATTCGAACCAGAGTTTTTCCG...........................................................................................................AAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG..............................................................................................................ATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTGGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTGATTCAGAAGAGGAAATTATGTCTGATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271203" ref_strand="+" ref_description="SGN-E271203 [cLEM-5-O15]">
      <seq>ttgaagtttctttgtttaagagtcaggatggtagcctgatcaacaaaaatgatcaggatggtagcttcatcaacaaaaatgatcattggaaggcgttgtcctgctccttagatgatgaattttgtcacgtcactagaattacatccacttgtaattcagaagaggaaattatgtctgatgatgagatgaggccttctactgatggaaaattcaaaagagatggtaaaagtacaatgcttaaagtaagcgcagattgcaaatcaggagctttcttcaataaagatgctgggtgttcatcggtatacggggcctcatcaaaattgaacagatcatctaaaggaagcccgggcaaatctaaggccaaatttttgttccaatcccggccacagaagaaagactatgctttggttgtccatgatagttgtgaaacctgcatgcccttatctgtgcttccactaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="33678" stop="35213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33978" g_stop="34162" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34163" i_stop="34267" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34268" g_stop="34421" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="339" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34422" i_stop="34790" i_length="369">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34791" g_stop="34913" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E271203" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33978" e_stop="34162"/>
          <exon e_start="34268" e_stop="34421"/>
          <exon e_start="34791" e_stop="34913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTCTGATGATGAGGTATGACTGCTGATCTCTATGTAGATCGATATCACTAAAACTTGAATAATTAATATTTTGTCCAACCTATACTAAGTGGATCTTTGGAGGTTAAAAATCTGGCAGATGAGGCCTTCTACTGATGGAAAATTCAAAAGAGATGGTAAAAGTACAATGCTTAAAGTAAGCGCAGATTGCAAATCAGGAGCTTTCTTCAATAAAGATGCTGGGTGTTCATCGGTATACGGGGCCTCATCAAAATTGAACAGATCATCTAAAGGTATTAGTATTTCTGTTGACTTCATTTCCCTATTTTGCATTCTTTGTCTTGATGCTAAAGATGTCGTCAACTCCCCCAACGAGAAGAATGATCTTAATCAAGCATTGTTCATCACAGTTGGTTAAGTTGTCTTGGACTAAGCTGTTACTGACAAGCATAACAATGTAATCCCCCCCCCCCAGCATAACATGTGTAATTGTGGTGTTTCTCAGGAACAAGTGAACTCCAAGTAAAATAGAAAAGAAATGGATGCATCTCAATATTGAATCCTCGAGTCTGACATCTATGACGGCTCTTTTTTTTTACTTGAGATCTGTGATTGAGTTTTCAAGCTGTAAATTTTTGAACGACTTTTGATATCAACTGCAGGAAGCCCGGGCAAATCTAAGGCCAAATTTTTGTTCCAATCCCGGCCACAGAAGAAAGACTATGCTTTGGTTGTCCATGATAGTTGTGAAACCTGCATGCCCTTATCTGTGCTTCCACTAAATG</genome_strand>
        <mrna_strand>TTGAAGTTTCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTCTGATGATGAG.........................................................................................................ATGAGGCCTTCTACTGATGGAAAATTCAAAAGAGATGGTAAAAGTACAATGCTTAAAGTAAGCGCAGATTGCAAATCAGGAGCTTTCTTCAATAAAGATGCTGGGTGTTCATCGGTATACGGGGCCTCATCAAAATTGAACAGATCATCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................GAAGCCCGGGCAAATCTAAGGCCAAATTTTTGTTCCAATCCCGGCCACAGAAGAAAGACTATGCTTTGGTTGTCCATGATAGTTGTGAAACCTGCATGCCCTTATCTGTGCTTCCACTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251477" ref_strand="+" ref_description="SGN-E251477 [cLEG-9-B16]">
      <seq>aaatatagagtcactggatgacttattggagaattatggtggaaatgaagtacaacagttcgaggagaatttggtctcatctgaagtagcagttgtacatgatccaaatgagcattccatggctgaggttctggatcactttcagcatacaagttcctcacgaggcaatcctaaaatgctgcaaacaaaaatacctggatcacggttcttacggaagagaaacttattgctgcttggtgacagaaacatgagcaatggcgaacaacctgaggaactagatagtgatccatctagtgatgaggatgtaaatgaagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttaggagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaggttgcagcacgtgatgcaatgtgaaaaggacagagatacatattttttggagaagtcacaaacacatgctgcttcaagtggtgcagaaagcttcattgatgtgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="34636" stop="36169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34936" g_stop="35113" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35230" g_stop="35361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="310" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35440" g_stop="35561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="432" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35682" g_stop="35773" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="524" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69">
            <donor d_prob="0.275" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35843" g_stop="35869" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="551" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E251477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34936" e_stop="35113"/>
          <exon e_start="35230" e_stop="35361"/>
          <exon e_start="35440" e_stop="35561"/>
          <exon e_start="35682" e_stop="35773"/>
          <exon e_start="35843" e_stop="35869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATGGTTTGCTTTCTTCTTCTCCAGATCTCTTTTCTTAAAGATCTCAGCAGCGCTTCCGTATTACCATTTTTACTATTTCAATTATGTTTTTGAACGTAAGAATCATGCCTATCCAACAGCTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAATGTAGTTAATCTTTTACTGCTTAATCATCACGATCAATTGCCATATGTAGTTCTCTCAATTCCTTTCTTTTTGTTTCAGGAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTGGTAAAAGGCCAAACTGTGTATCTCCTGTCTCTTGCTTGTTTCTGACCTTCTCCTCTGCTGTTAATTCAGGTGCAGAAAGCTTCATTGATGTGAGAA</genome_strand>
        <mrna_strand>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG....................................................................................................................CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT..............................................................................GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG.....................................................................GTGCAGAAAGCTTCATTGATGTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260051" ref_strand="+" ref_description="SGN-E260051 [cLEG-52-M20]">
      <seq>aaatatagagtcactggatgacttattggagaattatggtggaaatgaagtacaacagttcgaggagaatttggtctcatctgaagtagcagttgtacatgatccaaatgagcattccatggctgaggttctggatcactttcagcatacaagttcctcacgaggcaatcctaaaatgctgcaaacaaaaatacctggatcacggttcttacggaagagaaacttattgctgcttggtgacagaaacatgagcaatggcgaacaacctgaggaactagatagtgatccatctagtgatgaggatgtaaatgaagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttaggagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaagttgcagcacgtgatgcaatgttgaaaagacagagatacatattttttggagaagtcacaaacacatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="34636" stop="36064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34936" g_stop="35113" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35230" g_stop="35361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="310" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35440" g_stop="35561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="432" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35682" g_stop="35764" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="515" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E260051" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34936" e_stop="35113"/>
          <exon e_start="35230" e_stop="35361"/>
          <exon e_start="35440" e_stop="35561"/>
          <exon e_start="35682" e_stop="35764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATGGTTTGCTTTCTTCTTCTCCAGATCTCTTTTCTTAAAGATCTCAGCAGCGCTTCCGTATTACCATTTTTACTATTTCAATTATGTTTTTGAACGTAAGAATCATGCCTATCCAACAGCTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAATGTAGTTAATCTTTTACTGCTTAATCATCACGATCAATTGCCATATGTAGTTCTCTCAATTCCTTTCTTTTTGTTTCAGGAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTG</genome_strand>
        <mrna_strand>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG....................................................................................................................CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT..............................................................................GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAAGTTGCAGCACGTGATGCAATGTTGAAAAGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262885" ref_strand="+" ref_description="SGN-E262885 [cLEG-59-B15]">
      <seq>aatatagagacactggatgacttattggagaattaaggtggaaatgaagtacaacagttcgaggagaatttggtctcatctgaagtagcagttgtacatgatccaaatgagcattccatggctgaggttctggatcactttcagcatacaagttcctcacgaggcaatcctaaaatgctgcaaacaaaaatacctggatcacggttcttacggaagagaaacttattgctgcttggtgacagaaacatgagcaatggcgaacaacctgaggaactagatagtgatccatctagtgatgaggatgtaaatgaagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttacgagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaggttgcagcacgtgatgcaatgtgagaaggacagagatacatatttttttggagaagtcacaaacacatgctgcttcaagtggtgcagaaagcttcattgatgtgagaattttgtcaagttctttggaggccaagctgactgtttgattttgtgctttacatggagatgaacagggttctgagtgcctgagcaatcctcgagaaaggaacgggactggntanaaaggagtttactatcatttttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="34637" stop="37514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34937" g_stop="35113" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35230" g_stop="35361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="309" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35440" g_stop="35561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="431" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35682" g_stop="35773" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="524" r_length="93" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69">
            <donor d_prob="0.275" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35843" g_stop="35934" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="616" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35935" i_stop="37141" i_length="1207">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37142" g_stop="37214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="690" r_length="74" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E262885" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34937" e_stop="35113"/>
          <exon e_start="35230" e_stop="35361"/>
          <exon e_start="35440" e_stop="35561"/>
          <exon e_start="35682" e_stop="35773"/>
          <exon e_start="35843" e_stop="35934"/>
          <exon e_start="37142" e_stop="37214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATGGTTTGCTTTCTTCTTCTCCAGATCTCTTTTCTTAAAGATCTCAGCAGCGCTTCCGTATTACCATTTTTACTATTTCAATTATGTTTTTGAACGTAAGAATCATGCCTATCCAACAGCTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAATGTAGTTAATCTTTTACTGCTTAATCATCACGATCAATTGCCATATGTAGTTCTCTCAATTCCTTTCTTTTTGTTTCAGGAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATA-TTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTGGTAAAAGGCCAAACTGTGTATCTCCTGTCTCTTGCTTGTTTCTGACCTTCTCCTCTGCTGTTAATTCAGGTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAGGTACTTGAACTAACTATTGTACATTTGCTAAACAGAAGGTTAAAAGTATGAGCATGTCTACTTTATTGAGGATACAACGTTGCTTTCAACTTTTTGAAGGTCCTTCGCGTGCTTTTCTTGCTCTCACTAGTTTCTTAAGTAAAAATTCCCAGTACTTGTTTTGATGATAGCCAATTTTTACTTGGTGCCTGGAACATTTACCATTCTCATATAAATGGACAACTTTTAGAAATTCAGCATGTTGCATGGCACAAAAAGTCGGGTAGGGTGGCCTAGGACCGTGGATACTGAGGGTAAAGAACTTTTACTTTCCATTATAGGTGGTAGCTTTTGGGTGAAGTGTCGTAGTTTCTTAACTTACTATACACCATTTCCCTCCGAAGCACTGTAAGAAATAAGCCCTGCAAATTAAACAAACAATGTGGTAGTTAGTTTTTTTTTTTTTTTGAAATGTGTAATCAGTAAGGAACTCCCAAAATTAATTTATCACTGTGTTCAATAATTGCATATTTCACTTTTTTCCCCAATAATTGCAGTCGTTTAATAATATGGCATTTACTGTGATCTGTATAAACTTTTTCAGAAATGTGTTCCTTGTAGTATCTACGACTTGACTCTTAGGAGCTTCAGATAATTGAAGGACCATGGAGACGTTATATTTGTTCTATGATTTCTTTCTTCTTTTGTTTTAGATCAATATTTTTCATCCTTTGTGCTTAAACCACTTCTTGGTTTCTTCTTTACCTCGTCTGGATCAATATTATTTCTTAATTCACAAAGAAGCTTGCAAATTTAGGGTCAGAATATGCCCATGATCCAAATGTCTAACCAAGGATGTTCGCTGTCACTTACGATCTATATACGTAGTTTGTACTGGAGGATTATCTAATGCAAGATTGAATAAATTGATATATATTTAGGTTTTATCTGCTTTTGTTTAAATACAGAAGGAGGGAAAAAAGTGATCTCGACAAACACAAATCAGTACTCATTCCCCAAGCACATAGGTCTAGAAGGGAAAAAAAGAAGTTTCATACCATCTGGCTAGTCATTTCGTCATAATGGAAATTTTTAAGAATGAAAGTTGGGGTCTTAACATTTATTAACTGTTTATTTTACTCTAACTGGTGTTGATGGTTTCATTTACCAAACAGAATAAATCTGTGGTGTTGGGTGATGCGATTGTCAATTTTATTTTTCTTTGCAGGGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGG-TAGAAGGGAGTTTACTATCATTTTTAACT</genome_strand>
        <mrna_strand>AATATAGAGACACTGGATGACTTATTGGAGAATTAAGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG....................................................................................................................CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT..............................................................................GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTACGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAGAAGGACAGAGATACATATTTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG.....................................................................GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGATTTTGTGCTTTACATGGAGATGAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAACGGGACTGGNTANAAAGGAGTTTACTATCATTTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551085" ref_strand="+" ref_description="SGN-E551085 [TUS-55-C3]">
      <seq>tggatgacttattggagaattatggtggaaatgaagtacaacagttcgaggagaatttggtctcatctgaagtagcagttgtacatgatccaaatgagcattccatggctgaggttctggatcactttcagcatacaagttcctcacgaggcaatcctaaaatgctgcaaacaaaaatacctggatcacggttcttacggaagagaaacttattgctgcttggtgacagaaacatgagcaatggcgaacaacctgaggaactagatagtgatccatctagtgatgaggatgtaaatgaagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttaggagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaggttgcagcacgtgatgcaatgtgaaaaggacagagatacatattttttggagaagtcacaaacacatgctgcttncagtggtgcagaaagcttcattgatgtgagaattttgtcaagttctttggaggccaagctgactgtttgtttttgtgctttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="34650" stop="36222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34950" g_stop="35113" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35230" g_stop="35361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="296" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35440" g_stop="35561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="418" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35682" g_stop="35773" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="510" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69">
            <donor d_prob="0.275" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35843" g_stop="35922" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="590" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E551085" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34950" e_stop="35113"/>
          <exon e_start="35230" e_stop="35361"/>
          <exon e_start="35440" e_stop="35561"/>
          <exon e_start="35682" e_stop="35773"/>
          <exon e_start="35843" e_stop="35922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATGGTTTGCTTTCTTCTTCTCCAGATCTCTTTTCTTAAAGATCTCAGCAGCGCTTCCGTATTACCATTTTTACTATTTCAATTATGTTTTTGAACGTAAGAATCATGCCTATCCAACAGCTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAATGTAGTTAATCTTTTACTGCTTAATCATCACGATCAATTGCCATATGTAGTTCTCTCAATTCCTTTCTTTTTGTTTCAGGAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTGGTAAAAGGCCAAACTGTGTATCTCCTGTCTCTTGCTTGTTTCTGACCTTCTCCTCTGCTGTTAATTCAGGTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACAT</genome_strand>
        <mrna_strand>TGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG....................................................................................................................CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT..............................................................................GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTNCAGTG.....................................................................GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688863" ref_strand="+" ref_description="SGN-E688863 [t3_tus_55_C03]">
      <seq>tggatgacttattggagaattatggtggaaatgaagtacaacagttcgaggagaatttggtctcatctgaagtagcagttgtacatgatccaaatgagcattccatggctgaggttctggatcactttcagcatacaagttcctcacgaggcaatcctaaaatgctgcaaacaaaaatacctggatcacggttcttacggaagagaaacttattgctgcttggtgacagaaacatgagcaatggcgaacaacctgaggaactagatagtgatccatctagtgatgaggatgtaaatgaagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttaggagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaggttgcagcacgtgatgcaatgtgaaaaggacagagatacatattttttggagaagtcacaaacacatgctgcttncagtggtgcagaaagcttcattgatgtgagaattttgtcaagttctttggaggccaagctgactgtttgtttttgtgctttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="34650" stop="36222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34950" g_stop="35113" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35230" g_stop="35361" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="296" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35440" g_stop="35561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="418" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35682" g_stop="35773" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="510" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69">
            <donor d_prob="0.275" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35843" g_stop="35922" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="590" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E688863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34950" e_stop="35113"/>
          <exon e_start="35230" e_stop="35361"/>
          <exon e_start="35440" e_stop="35561"/>
          <exon e_start="35682" e_stop="35773"/>
          <exon e_start="35843" e_stop="35922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATGGTTTGCTTTCTTCTTCTCCAGATCTCTTTTCTTAAAGATCTCAGCAGCGCTTCCGTATTACCATTTTTACTATTTCAATTATGTTTTTGAACGTAAGAATCATGCCTATCCAACAGCTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAATGTAGTTAATCTTTTACTGCTTAATCATCACGATCAATTGCCATATGTAGTTCTCTCAATTCCTTTCTTTTTGTTTCAGGAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTGGTAAAAGGCCAAACTGTGTATCTCCTGTCTCTTGCTTGTTTCTGACCTTCTCCTCTGCTGTTAATTCAGGTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACAT</genome_strand>
        <mrna_strand>TGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG....................................................................................................................CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT..............................................................................GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTNCAGTG.....................................................................GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688594" ref_strand="+" ref_description="SGN-E688594 [t3_tus_54_B16]">
      <seq>aagttccccagattctgaagtctgctatacctcagaggaccatggctgaccaatttcatctagcgttaggagctgtatccacaaatgagaggctatgtattgcaaggcctaagcaatttggtttatctggaaggttgcagcacgtgatgcaatgtgaaaaggacagagatacatattttttggagaagtcacaaacacatgctgcttcaagtggtgcagaaagcttcattgatgtgagaattttgtcaagttctttggaggccaagctgactgtttgtttttgtgctttacatggagatgaagaggaaggaggtacatgtgaacgagaaagacgaggccatcattttgtgtgcatatttctctcagatttagtctttggatcacattttataccaagtccatggtatccccttgtcaactgcaaccatgagagttatttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatggccaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="35141" stop="38814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35441" g_stop="35561" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35682" g_stop="35773" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="213" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69">
            <donor d_prob="0.275" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35843" g_stop="35934" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="305" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35935" i_stop="37629" i_length="1695">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37630" g_stop="37721" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="397" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37722" i_stop="38414" i_length="693">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38415" g_stop="38514" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="497" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E688594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35441" e_stop="35561"/>
          <exon e_start="35682" e_stop="35773"/>
          <exon e_start="35843" e_stop="35934"/>
          <exon e_start="37630" e_stop="37721"/>
          <exon e_start="38415" e_stop="38514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGGGTGAGTTATGGAACTAGAATGTATCAGTTATGAGCATATTCTGCATGTTTTCTATGAACAGAAACAGAAAAATATTCTTCAAATTTTATCTTTTCTTACTTGTGTTGATAAGTCATGCAGTTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTGGTAAAAGGCCAAACTGTGTATCTCCTGTCTCTTGCTTGTTTCTGACCTTCTCCTCTGCTGTTAATTCAGGTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAGGTACTTGAACTAACTATTGTACATTTGCTAAACAGAAGGTTAAAAGTATGAGCATGTCTACTTTATTGAGGATACAACGTTGCTTTCAACTTTTTGAAGGTCCTTCGCGTGCTTTTCTTGCTCTCACTAGTTTCTTAAGTAAAAATTCCCAGTACTTGTTTTGATGATAGCCAATTTTTACTTGGTGCCTGGAACATTTACCATTCTCATATAAATGGACAACTTTTAGAAATTCAGCATGTTGCATGGCACAAAAAGTCGGGTAGGGTGGCCTAGGACCGTGGATACTGAGGGTAAAGAACTTTTACTTTCCATTATAGGTGGTAGCTTTTGGGTGAAGTGTCGTAGTTTCTTAACTTACTATACACCATTTCCCTCCGAAGCACTGTAAGAAATAAGCCCTGCAAATTAAACAAACAATGTGGTAGTTAGTTTTTTTTTTTTTTTGAAATGTGTAATCAGTAAGGAACTCCCAAAATTAATTTATCACTGTGTTCAATAATTGCATATTTCACTTTTTTCCCCAATAATTGCAGTCGTTTAATAATATGGCATTTACTGTGATCTGTATAAACTTTTTCAGAAATGTGTTCCTTGTAGTATCTACGACTTGACTCTTAGGAGCTTCAGATAATTGAAGGACCATGGAGACGTTATATTTGTTCTATGATTTCTTTCTTCTTTTGTTTTAGATCAATATTTTTCATCCTTTGTGCTTAAACCACTTCTTGGTTTCTTCTTTACCTCGTCTGGATCAATATTATTTCTTAATTCACAAAGAAGCTTGCAAATTTAGGGTCAGAATATGCCCATGATCCAAATGTCTAACCAAGGATGTTCGCTGTCACTTACGATCTATATACGTAGTTTGTACTGGAGGATTATCTAATGCAAGATTGAATAAATTGATATATATTTAGGTTTTATCTGCTTTTGTTTAAATACAGAAGGAGGGAAAAAAGTGATCTCGACAAACACAAATCAGTACTCATTCCCCAAGCACATAGGTCTAGAAGGGAAAAAAAGAAGTTTCATACCATCTGGCTAGTCATTTCGTCATAATGGAAATTTTTAAGAATGAAAGTTGGGGTCTTAACATTTATTAACTGTTTATTTTACTCTAACTGGTGTTGATGGTTTCATTTACCAAACAGAATAAATCTGTGGTGTTGGGTGATGCGATTGTCAATTTTATTTTTCTTTGCAGGGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGGTAGAAGGGAGTTTACTATCATTTTTAACTCAAGAATTTGTAAAGATGTCGAACTTGAAATAGGGAATGTTATCCGCATACATCAACCTTGGTAGGAGGCGCTAAAATATTTTCTTTTTTCAATATTTGTTGTTTTTGTTTGTTTGGATAATACTCTTTTCTCGGTACCGGGTTGAGTATGATGGCTCTTGGCACCCAACCTAAATTATTGTGATTGAAATGCCTAGAAGGCTAGAGCACCCTTTTGGTAGAAGTGGAGTAACTCTATACATTAAATTTTCTAAAAACAAGGAGACAAAGCTAGATTGATTTTAGCCCCTCATAGCATGGAGGAAAGTTCTGATTCTGTCCTTGTAAATTATTAACTGTACCTTTTACTGAACTTTCTTGCATTGCTTAACAAATACTAAGTGATTCTTTAACAGACTGATTTTTTCTGGTGCAGGAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAGGTAATAGCAAGGTTCCTTGAGATAACTCTATTGTTGTACTTTGCACTTGCCTATATTTTCTAAATAGATAAAAATATAGAAGTCTAATTTATCCATTTTCGCCATAAATATTACTCATGACTACTGCAAAATGTATGAATGCCTTGAAACAAATTGGTTGCATCTGCAAGTTTCCTGGTACATCCCCATGATGTATCCAAGATCCTATAGTTTAAAAGGAATTTTTATATTTTAGGAAAGAATAGAGATGGAATGTAATTAACTCTAAACACTGTAGGATTTATGTAATTTTTACAGAAAAATAAAAATAATTCTGAGTGTTGAAGTTTACACCTCCCATAGTTTGAAGTAGTCAGTCTGTACTATCCAGCCTGTTTGTTCAACTTTAAAATGCACTTAACAAATTGGTTTAGTCAACATATAAGGATAGTTGTGAGGTCATTAATTACCTAATTAGATTATTAATCTGTTCTTTCTCCATCTTATAATCATGGTATTACTTAGCCTCTAATCTTAAAGCATTTAAAAAAGGTTTGCTTAGGATTCAAGACTTTTTGGATATATTGATTTTTTTAAGAATGATATCAAGAAAATTTTACCCTATATATACCCCTCCATATAACTTCATTTCATCAACTTGGAGCAATCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGA</genome_strand>
        <mrna_strand>AAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG........................................................................................................................TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG.....................................................................GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363865" ref_strand="+" ref_description="SGN-E363865 [cLPT-10-H18]">
      <seq>cttcattgatgtgagaattttgtcaagttctttggaggccaagctgactgtttgtttttgtgctttacatggagatgaagagggttctgagtgcctgagcaatcctcgagaaaggaagggtactggcagaaggaagtttattatcatttttaactcaagaatttgtaaagatgtcgaacttacaatagggaatgttatccgcatacatcaaccttggaaggaggtacatgtgaacgagaaagacgaggccatcattttgtgtgcatatttctctcagatttagtctttggatcacattttataccaaggtaatagcaaggttccttgagataactctattgttgtactttgcacttgccctatattgtctaaatagataaaaatatagaagtctaatttatccattttcgccataaatattactcatgactactgcaaaatgtatgaatgccttaaaacaaattggtatgcatctgcaggtttcctggtacatccccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="35553" stop="38213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35853" g_stop="35934" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35935" i_stop="37141" i_length="1207">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37142" g_stop="37275" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="216" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37276" i_stop="37629" i_length="354">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37630" g_stop="37913" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="502" r_length="286" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E363865" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35853" e_stop="35934"/>
          <exon e_start="37142" e_stop="37275"/>
          <exon e_start="37630" e_stop="37913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAGGTACTTGAACTAACTATTGTACATTTGCTAAACAGAAGGTTAAAAGTATGAGCATGTCTACTTTATTGAGGATACAACGTTGCTTTCAACTTTTTGAAGGTCCTTCGCGTGCTTTTCTTGCTCTCACTAGTTTCTTAAGTAAAAATTCCCAGTACTTGTTTTGATGATAGCCAATTTTTACTTGGTGCCTGGAACATTTACCATTCTCATATAAATGGACAACTTTTAGAAATTCAGCATGTTGCATGGCACAAAAAGTCGGGTAGGGTGGCCTAGGACCGTGGATACTGAGGGTAAAGAACTTTTACTTTCCATTATAGGTGGTAGCTTTTGGGTGAAGTGTCGTAGTTTCTTAACTTACTATACACCATTTCCCTCCGAAGCACTGTAAGAAATAAGCCCTGCAAATTAAACAAACAATGTGGTAGTTAGTTTTTTTTTTTTTTTGAAATGTGTAATCAGTAAGGAACTCCCAAAATTAATTTATCACTGTGTTCAATAATTGCATATTTCACTTTTTTCCCCAATAATTGCAGTCGTTTAATAATATGGCATTTACTGTGATCTGTATAAACTTTTTCAGAAATGTGTTCCTTGTAGTATCTACGACTTGACTCTTAGGAGCTTCAGATAATTGAAGGACCATGGAGACGTTATATTTGTTCTATGATTTCTTTCTTCTTTTGTTTTAGATCAATATTTTTCATCCTTTGTGCTTAAACCACTTCTTGGTTTCTTCTTTACCTCGTCTGGATCAATATTATTTCTTAATTCACAAAGAAGCTTGCAAATTTAGGGTCAGAATATGCCCATGATCCAAATGTCTAACCAAGGATGTTCGCTGTCACTTACGATCTATATACGTAGTTTGTACTGGAGGATTATCTAATGCAAGATTGAATAAATTGATATATATTTAGGTTTTATCTGCTTTTGTTTAAATACAGAAGGAGGGAAAAAAGTGATCTCGACAAACACAAATCAGTACTCATTCCCCAAGCACATAGGTCTAGAAGGGAAAAAAAGAAGTTTCATACCATCTGGCTAGTCATTTCGTCATAATGGAAATTTTTAAGAATGAAAGTTGGGGTCTTAACATTTATTAACTGTTTATTTTACTCTAACTGGTGTTGATGGTTTCATTTACCAAACAGAATAAATCTGTGGTGTTGGGTGATGCGATTGTCAATTTTATTTTTCTTTGCAGGGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGGTAGAAGGGAGTTTACTATCATTTTTAACTCAAGAATTTGTAAAGATGTCGAACTTGAAATAGGGAATGTTATCCGCATACATCAACCTTGGTAGGAGGCGCTAAAATATTTTCTTTTTTCAATATTTGTTGTTTTTGTTTGTTTGGATAATACTCTTTTCTCGGTACCGGGTTGAGTATGATGGCTCTTGGCACCCAACCTAAATTATTGTGATTGAAATGCCTAGAAGGCTAGAGCACCCTTTTGGTAGAAGTGGAGTAACTCTATACATTAAATTTTCTAAAAACAAGGAGACAAAGCTAGATTGATTTTAGCCCCTCATAGCATGGAGGAAAGTTCTGATTCTGTCCTTGTAAATTATTAACTGTACCTTTTACTGAACTTTCTTGCATTGCTTAACAAATACTAAGTGATTCTTTAACAGACTGATTTTTTCTGGTGCAGGAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAGGTAATAGCAAGGTTCCTTGAGATAACTCTATTGTTGTACTTTGCACTTG-CCTATATTTTCTAAATAGATAAAAATATAGAAGTCTAATTTATCCATTTTCGCCATAAATATTACTCATGACTACTGCAAAATGTATGAATGCCTTGAAACAAATTGGT-TGCATCTGCAAGTTTCCTGGTACATCCCCATGAT</genome_strand>
        <mrna_strand>CTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGGCAGAAGGAAGTTTATTATCATTTTTAACTCAAGAATTTGTAAAGATGTCGAACTTACAATAGGGAATGTTATCCGCATACATCAACCTTG..................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAGGTAATAGCAAGGTTCCTTGAGATAACTCTATTGTTGTACTTTGCACTTGCCCTATATTGTCTAAATAGATAAAAATATAGAAGTCTAATTTATCCATTTTCGCCATAAATATTACTCATGACTACTGCAAAATGTATGAATGCCTTAAAACAAATTGGTATGCATCTGCAGGTTTCCTGGTACATCCCCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250145" ref_strand="+" ref_description="SGN-E250145 [cLEG-11-C23]">
      <seq>aaaggtttgcttaggattcaagactttttggatatattgatttttttaagaatgatatcaagaaaattttaccctatatatacccctccatataacttcatttcatcaacttggagcaatctatcataatcctaatttattattcttgaaataatggcaatcaaagtccatggtatccccttgtcaactgcaaccatgagagttatttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatggccaaagaagaacacaagaggcaccctttcctctcactcaatgtaagcataaataattactccctctgtacagctacataaatatttaagaattgtttgaccataagtttcaaaagttcttttctttaaacatggtgtcaagtcaaatggtgtcaaataaaatgggacggttgaagtacattattagcatgtttgatcaagttttggagaagctaaaagtatttctttttaaatgtttattttagaaatttgagatgttcagtgttttttagtagcagcataaactgaactaaaaacacttttttgaaactttggtcaaacacaaatgttgcaaaaacatttgtcatattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="37949" stop="39160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38249" g_stop="38860" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E250145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38249" e_stop="38860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTTGCTTAGGATTCAAGACTTTTTGGATATATTGATTTTTTTAAGAATGATATCAAGAAAATTTTACCCTATATATACCCCTCCATATAACTTCATTTCATCAACTTGGAGCAATCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATG</genome_strand>
        <mrna_strand>AAAGGTTTGCTTAGGATTCAAGACTTTTTGGATATATTGATTTTTTTAAGAATGATATCAAGAAAATTTTACCCTATATATACCCCTCCATATAACTTCATTTCATCAACTTGGAGCAATCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309720" ref_strand="+" ref_description="SGN-E309720 [cLEY-26-O6]">
      <seq>tctatcataatcctaatttattattcttgaaataatggccatcaaagtccatggtatccccttgtcaactgcaaccatgagagttatttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatggccaaagaagaacacaagaggccccctttcctctcacctcaatccttttgctcaagtcccagcatttgaagatggagacttgaagctctttgaatcaagggccaatcactcaataccattgctcaggtttatgctagcaatggcattcaactaatactccaagatccaatgaaaatggccattatgtcagtatggatggaagtagaaggccaaaaatttgaacccccagcttcaaaattaaccatgggagcctagtcataaaaccaatgattggcttgggcagtaccgatgatgttattgtgaaggaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38068" stop="40686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38368" g_stop="38548" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="231" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40386" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="515" r_length="284" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E309720" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38368" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCA-CTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGG-CAATCACTCAATA-CATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAA-CATGGGAG-CTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGG</genome_strand>
        <mrna_strand>TCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCCATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCCCCCTTTCCTCTCACCTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTCCCAGCATTTGAAGATGGAGACTTGAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCCAATCACTCAATACCATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCCCCAGCTTCAAAATTAACCATGGGAGCCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429545" ref_strand="+" ref_description="SGN-E429545 [STM-52-A20]">
      <seq>cataatcctaatttattagtattcttgaaataatggcaatcaaagtccatggtatccccttgtcaactgcaaccatgagagttgtttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatggccaatgaagaacacaagaagcaccctttcctttcactcaatccttttgctcaagtaccagcatttgaagatggggacttaaagctctttgaatcaagggcaatcactcaatacattgctcatacttatgctagcaatggcattcaactaatactccaagatccaaagaaaatggcgattatgtcaatatggatggaagtagaaggccaaaaatttgaaccacttgcttcaaaactaacatgggagctagtcataaaaccaatgattggcatgggcagtacaaatgatgatattgtgaaagaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttaggtggcgactcctttacgcttgttgatttgcaccatataccaaatatataccatttgatgaatacaaaagctaaggcactgtttgattcgcgccctcgtgtgagtgcatggtgtgctgatatattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38081" stop="40813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38373" g_stop="38548" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="228" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40513" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="635" r_length="407" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E429545" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38373" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCCTAATTTATT---ATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCT</genome_strand>
        <mrna_strand>CATAATCCTAATTTATTAGTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTGTTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAATGAAGAACACAAGAAGCACCCTTTCCTTTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGGGACTTAAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCATACTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAAAGAAAATGGCGATTATGTCAATATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACTTGCTTCAAAACTAACATGGGAGCTAGTCATAAAACCAATGATTGGCATGGGCAGTACAAATGATGATATTGTGAAAGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTAGGTGGCGACTCCTTTACGCTTGTTGATTTGCACCATATACCAAATATATACCATTTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGCATGGTGTGCTGATATATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457478" ref_strand="+" ref_description="SGN-E457478 [cPRO-2-H2]">
      <seq>cataatcctaatttattagtattcttgaaataatggcaatcaaagtccatggtatccccttgtcaactgcaaccatgagagttgtttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatggccaatgaagaacacaagaagcaccctttcctttcactcaatccttttgctcaagtaccagcatttgaagatggggacttaaagctctttgaatcaagggcaatcactcaatacattgctcatacttatgctagcaatggcattcaactaatactccaagatccaaagaaaatggcgattatgtcaatatggatggaagtagaaggccaaaaatttgaaccacttgcttcaaaactaacatgggagctagtcataaaaccaatgattggcatgggcagtacaaatgatgatattgntgaagaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttaggtggcgactcctttacgcttgttgatttgcaccatataccaatatataccatttgatgaatacaaagctaggcactgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38081" stop="40770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38373" g_stop="38548" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="228" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40470" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="589" r_length="361" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E457478" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38373" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCCTAATTTATT---ATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTG-TGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGA</genome_strand>
        <mrna_strand>CATAATCCTAATTTATTAGTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTGTTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAATGAAGAACACAAGAAGCACCCTTTCCTTTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGGGACTTAAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCATACTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAAAGAAAATGGCGATTATGTCAATATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACTTGCTTCAAAACTAACATGGGAGCTAGTCATAAAACCAATGATTGGCATGGGCAGTACAAATGATGATATTGNTGAA-GAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTAGGTGGCGACTCCTTTACGCTTGTTGATTTGCACCATATACC-AATATATACCATTTGATGAATAC-AAAGCT-AGGCACTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460965" ref_strand="+" ref_description="SGN-E460965 [cPRO-33-L22]">
      <seq>atttattagtattcttgaaataatggcaatcaaagtccatggtatccccttgtcaactgcaaccatgagagttgtttcttgccttattgagaaggatttggattttgagtttgtctttgttgagatggccaatgaagaacacaagaagcaccctttcctttcactcaatccttttgctcaagtaccagcatttgaagatggggacttaaagctctttgaatcaagggcaatcactcaatacattgctcatacttatgctagcaatggcattcaactaatactccaagatccaaagaaaatggccattatgtcaatatggatggaagtagaaggccaaaaatttgaaccacttgcttcaaaactaacatgggagctagtcataaaaccaatgattggcatgggcagtacaaatgatgctattgtgaaagaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagattcaaaatacttaggtggcgactcctttacacttgttgatttgcaccatataccaaatatataccatttgatgaattcaaaagctaaggcactgtttgattcgcgccctcgtgtgagtacatggtgtgctgatatattggctagaccagcttgggtgaagggcttggagaagctgcaaaaatgaaaaaaaatgaaaataatgccacatatatccatgttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38081" stop="40875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38380" g_stop="38548" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="218" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40564" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="676" r_length="458" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E460965" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38380" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTC</genome_strand>
        <mrna_strand>ATTTATTAGTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTGTTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGAGATGGCCAATGAAGAACACAAGAAGCACCCTTTCCTTTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGGGACTTAAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCATACTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAAAGAAAATGGCCATTATGTCAATATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACTTGCTTCAAAACTAACATGGGAGCTAGTCATAAAACCAATGATTGGCATGGGCAGTACAAATGATGCTATTGTGAAAGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGATTCAAAATACTTAGGTGGCGACTCCTTTACACTTGTTGATTTGCACCATATACCAAATATATACCATTTGATGAATTCAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTACATGGTGTGCTGATATATTGGCTAGACCAGCTTGGGTGAAGGGCTTGGAGAAGCTGCAAAAATGAAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464551" ref_strand="+" ref_description="SGN-E464551 [cPRO-18-G20]">
      <seq>atttattagtattcttgaaataatggcaatcaaagtccatggtatccccttgtcaactgcaaccatgagagttgtttcttgccttattgagaaggatttggattttgagtttgtctttgttgagatggccaatgaagaacacaagaagcaccctttcctttcactcaatccttttgctcaagtaccagcatttgaagatggggacttaaagctctttgaatcaagggcaatcactcaatacattgctcatacttatgctagcaatggcattcaactaatactccaagatccaaagaaaatggccattatgtcaatatggatggaagtagaaggccaaaaatttgaaccacttgcttcaaaactaacatgggagctagtcataaaaccaatgattggcatgggcagtacaaatgatgctattgtgaaagaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagattcaaaatacttaggtggcgactcctttacacttgttgatttgcaccatataccaaatatataccatttgatgaattcaaaagctaaggcactgtttgattcgcgccctcgtgtgagtacatggtgtgctgatatattggctagaccagcttgggtgaagggcttggagaagctgcaaaaatgaaaaaaaatgaaataatgaccacatatatccatgttttttcagaagcatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38081" stop="40900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38380" g_stop="38548" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="218" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40564" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="676" r_length="458" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E464551" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38380" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTC</genome_strand>
        <mrna_strand>ATTTATTAGTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTGTTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGAGATGGCCAATGAAGAACACAAGAAGCACCCTTTCCTTTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGGGACTTAAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCATACTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAAAGAAAATGGCCATTATGTCAATATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACTTGCTTCAAAACTAACATGGGAGCTAGTCATAAAACCAATGATTGGCATGGGCAGTACAAATGATGCTATTGTGAAAGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGATTCAAAATACTTAGGTGGCGACTCCTTTACACTTGTTGATTTGCACCATATACCAAATATATACCATTTGATGAATTCAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTACATGGTGTGCTGATATATTGGCTAGACCAGCTTGGGTGAAGGGCTTGGAGAAGCTGCAAAAATGAAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429546" ref_strand="-" ref_description="SGN-E429546 [STM-52-A20]">
      <seq>catgagagttgtttcttgccttattgagaaggatttggattttgagtttgtctttgttgatatgcccaatgaagaacacaagaagcaccctttcctttcactcaatccttttgctcaagtaccagcatttgaagatggggacttaaagctctttgaatcaagggcaatcactcaatacattgctcatacttatgctagcaatggcattcaactaatactccaagatccaaagaaaatggcgattatgtcaatatggatggaagtagaaggccaaaaatttgaaccacttgcttcaaaactaacatgggagctagtcataaaaccaatgattggcatgggcagtacaaatgatgatattgtgaaagaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttaggtggcgactcctttacgcttgttgatttgcaccatataccaaatatataccatttgatgaatacaaaagctaaggcactgtttgattcgcgccctcgtgtgagtgcatggtgtgctgatatattggctaggccagcttgggtgaagggcttggagaagctgcaaaaatgaaaacaaaataaaaagatcatgaccacatatatctatgttttttcagaagcatttctgtattagtatgttgtgtttcctgtctgaagttgttgtcttgcaatacaataaacagtgatctatatctatgtgattttactagttgtactgatgtaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38143" stop="41021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38443" g_stop="38548" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="155" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40726" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="766" r_length="611" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E429546" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429546" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38443" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATATGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTAAAATATGCTA</genome_strand>
        <mrna_strand>CATGAGAGTTGTTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGCCCAATGAAGAACACAAGAAGCACCCTTTCCTTTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGGGACTTAAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCATACTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAAAGAAAATGGCGATTATGTCAATATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACTTGCTTCAAAACTAACATGGGAGCTAGTCATAAAACCAATGATTGGCATGGGCAGTACAAATGATGATATTGTGAAAGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTAGGTGGCGACTCCTTTACGCTTGTTGATTTGCACCATATACCAAATATATACCATTTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGCATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGCTTGGAGAAGCTGCAAAAATGAAAACAA--AATAAAAAGAT-CATGACCA-CA-T-ATATCTATG-TTTT-TTCAGAAGCATTTCTGTATTAGTATGTTGTGTTTCCTGTCTGAAGTTG-TTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAGTTGTACTGATGTAAAAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308359" ref_strand="+" ref_description="SGN-E308359 [cLEY-25-E8]">
      <seq>gaagaacacatgaggcgccctttcctctcactcaatccttttgctcaagtaccagcatttgaagatggagacttgaagctctttgaatcaagggcaatcactcaatacattgctcaggtttatgctagcaatggcattcaactaatactccaagatccaatgaaaatggccattatgtcagtatggatggaagtagaaggccaaaaatttgaaccaccagcttcaaaattaacatgggagctagtcataaaaccaatgattggcttgggcagcaccgatgatgttattgtgaaggaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttgggtggcgactcctttacacttgttgatttgcatcatataccaaatatataccatctgatgaatacaaaagctaaggcactgtttgattcgcgccctcgtgtgagtgtatggtgtgctgatatattggctaggccagcttgggtgaaggggttggagaatatgcaaaaatgaaaaaaagtcgtgaattaatggatgatcataattcatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="38213" stop="40897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38513" g_stop="38548" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39140" g_stop="39188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="85" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40107" g_stop="40597" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="576" r_length="491" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E308359" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38513" e_stop="38548"/>
          <exon e_start="39140" e_stop="39188"/>
          <exon e_start="40107" e_stop="40597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATGGCAAATACAAATTGTCATCGTCCAAAATACTCTTTAAATACAACACTTTTTGAAATTAATAATTTCTAAAATGCTAAACAAACTATAAATTTATTTGGTAGTGAATGTTACTAGTGAAAAAAAATAAATCTATTTGGTAGTGATTTCTACACAGATTTATATTTGTCAAAAATATTTTAATTGGTTCACTTGTACTTGCTATCAATCCATTTTTTTCCTTTAATTTAAAATCATGAATTCATATAGTATATTAAAATGATATTTTCTCAATGGGTGCAGCCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTGGTAAAGTGTTTTAGCTAATCTTACAATTTGTAGTATATGTCTGCACCAAGGTGTTAAATTTGAAAAGATTTAAGTTACATATACATAAACATTATTAAATATTTTTTATACTATCAATGTAATCTATCATGTTATAGTAGGTTACTCATTATATTTACTAATTATTAGTGCTTATAATAGAATATTTAAAATATAACACAAAAAAATGCTCTTTAACCTTACCTCATCTGACATATATGCTCACCAACTTAGGATTTGCACGAGTGAACAATTAAACTTGTATATAATTGAATAAGTGGACACACATCCTACATGACAATTTGCAATCTTACATGGTGTCCTACATGTATTAAGTCATTTTAGACATGCGTGTCTACGTGTTCAACTTTATATAAATTTAAATGTCTACTTATGTACATATAAAATTGGACAGATGTCAGCTAAGTTCAAATTAAAAAACTATTTTTATGTATTGTGCCAAATTTTTTTACATTACCATACAAGTTGGATCAGAGTTAGTAATACAGGAGTTAAACTAAATCCTCTCCGCCGAATAATTATATTTATGCAAATAGAGCAAGACCAACTGTTATATCCAACCTTTTCCCCCTTGACATAAAAGGAAGATTTTACTAGTGATAAAGGGGTTCATAAGTTCAATCTTAACTTTGACATCCTAATATATATTTTTGAACCCTTTTTATATATATAAAGAAGAATTAACTCAACGAGTCACCACCCAATCGTTCAACACATGTATAATTTATGTTTATCAGTTGGGAAATGTAAACAAGTGAATCCATACAGTTAATTATGTAAAGATTCCTTATATGAATTCTTGTTTCTACCATTGCTGATAAGTGACCTTTTCTTTAAAACTTATCAATTTGAATGACAATATGTGCACTTGTAATGCAGAATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATAT</genome_strand>
        <mrna_strand>GAAGAACACATGAGGCGCCCTTTCCTCTCACTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGCACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAATATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203073" ref_strand="+" ref_description="SGN-E203073 [cLEB-3-D15](-)">
      <seq>tagtcataaaaccaatgattggcttgggcagtaccgatgatgttattgtgaaggaaagtgaagaacaattgtctaaggttcttgacatctacgaaactcgattgacagagtcaaaatacttgggtggcgactcctttacacttgttgatttgcatcatataccaaatatataccatctgatgaatacaaaagctaaggcactgtttgattcgcgccctcgtgtgagtgtatggtgtgctgatatattggctaggccagcttgggtgaaggggttggagaagatgcaaaaatgaaaaaaagtcgtgaattaatggatgatcataattcatatatatgtttttgttttgaagcatttgtgtcttaatatgttgtgtttcttgtctgaagatgtttgtcttgcaatacaataaacagtgatctatatctatgtgattttactaattgtactgatgtaaaatatgctatgttccggtcatttataaaataattgcgcgctatatttttgtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="39963" stop="41075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40263" g_stop="40769" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="529"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E203073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40263" e_stop="40769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATATGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTAAAATATGCTATGTTCCGGTCATTTATAAAATAATTGCGCGCTATATTTTTGTG</genome_strand>
        <mrna_strand>TAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATATGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTAAAATATGCTATGTTCCGGTCATTTATAAAATAATTGCGCGCTATATTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717626" ref_strand="+" ref_description="SGN-E717626 [FC02BB02]">
      <seq>gggcgattggcggccaatcggccgaattctcttcaccattcgcacctcattcagagaaaagtcaggtttttttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgaatcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggagataagtgttcatccattacgattttatcttgctttttcattgttgaagcctgtgctacagaattgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattattaagaagtgattaataaaggatacttatgggttaaattttgtggacacttttatttggtcagatgattcaaaatccggaggatattattcccagatttttgttctctcttgcgttgttatatgagctcccagttacctaatttctttatgggaggaaatatcataaatcagtgatttatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="47213" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46904" g_stop="46866" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="65" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="112" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="197" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="287" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42814" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="631" r_length="344" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42813" i_stop="41839" i_length="975">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41838" g_stop="41832" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="638" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41831" i_stop="41486" i_length="346">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.156" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41485" g_stop="41443" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="681" r_length="43" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E717626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46904" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42814"/>
          <exon e_start="41838" e_stop="41832"/>
          <exon e_start="41485" e_stop="41443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGACATTATTCCCAGATTTTTGTTCTCTCTTGCGTTGTTATATGAGCTCCCAGTTACCTAATTTCTTTATGGGAGGAAATATCATAAATCAGTGATTTATATAAGCCCATTTCTTCTTAGTTTTGGTTGTTTTGTGGTTTATAGTCCTGAATTAGTGTGGCATTAAAATTTGCATGCAACCCTTTAGGTCGAGAATATTGCTAAATGAGTCATAGAGTAGACAAAAGTGCAAGGTACAGTCAACTGCTAGAGTGATGTTCCTCACTGTATTTGTGGGTTTTCTTCTGGGCTGTCTTCTTATTTAGCCGATGGAGAGGTAATAGGTATCCTGTGAAATTGTTGATGGAGTGTTCACCTAACACTATAACATGTTAATCTATGCGTAATCAAACCATGTGGCAACTTTATCATAAAAACAAGACAAGTAAATTGAAATGGATGGAGTAATTTTTATGGAATAATTAGGTTTTTGTTTTAGTTGTTGACTTGTGATGACAAATCAAAGGTTTCTTATCTTCTTTAGGTGCTTTGTTTTTAATCTGTGGATATCTTATTGATTTTTTAGAGCTTCCTGATTCTGTATGCTTATTCACTTGTTTGTCAAGCAGGATGAGAAGTATATATGTTCTCTATATAATGAAATGACTAAAGATTTTTTTTTGAATTGAAAATTACAGAGAAAGAGTCTGTTTTTAAGAAATATAGTTTTACTGTACAAAATAGATATGGGAGTACATATTTTGAATACAGGGAATACGATTCTTTTTGGTTTTCACCGTCCTCCGAAAATAATTATAACTTATAAATATACATAAATTATACACTAATGATGTATAATTTTGCGTATATTATACATCCGTAGATAATTATTTTGGACGGTGGCGATACAGTGTGAAAATCCCCTTTTAATGTTTAAGAATGGGTCCAAAACCCCAAGAACATGATAGTTCTAATGGGATCTTCCATGTTTGAACTCTTTCTTCTTTGATTTTGATTTTCTTTGGAATTTTGTTTTGATTTTGAGAGCTTTTCTCTGGTTGTTCTCTTTGATTTGTGAATCAAAGATTTATCATCTTCAGAGAAATGGTGAGGCTTCATCCGTGTGTTGAAATGTTTTACTTAAGATATTGAAGCTTCTTATAAATTGTGGACAAAATACAAACAAATTTATAGAAAAAAACTTCATGAAATGAGAAAAGCATTAGAGATGGAATATATGATAGATATCTCCATTTATTAAGCATATATTCCTTATGTCTGTTGATGTGGATGGTGTATATATCAGTATTTGCTCGTATCACTTGAACCCCTCTCGTCGGAAAATTATATGGTTAAATTTTTATCAATAATAAAAAATCACTATTTTATCGTTGTAATTTTCTGTTGAAAAATATTTAGAACGTGATTCCATAGATATTTTGATTGAACTCAGTAAGAAGAGAAAAAAATAGTAGTATTTCCACACATAAAAAAAT</genome_strand>
        <mrna_strand>TTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAG.................................................................................................................................................................................................................................................GTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGAATTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGATATTATTCCCAGATTTTTGTTCTCTCTTGCGTTGTTATATGAGCTCCCAGTTACCTAATTTCTTTATGGGAGGAAATATCATAAATCAGTGATTTATATAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA..........................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722257" ref_strand="+" ref_description="SGN-E722257 [FC16CH06]">
      <seq>gggcgattggcggccaatcggccgaattgctcttctgtcttctcttcaccattcgcacctcattcagagaaaagtcaggtttttttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgaatcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggagataagtgttcatccattacgattttatcttgctttttcattgttgaagcctgtgctacagaattgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattattaagaagtgattaataaaggatacttatgggttaaattttgtggacacttttatttggtcagatgattcaaaatccggaggatattattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="47214" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46914" g_stop="46866" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="78" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="125" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="210" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="300" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42902" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="556" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42901" i_stop="41839" i_length="1063">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41838" g_stop="41832" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="563" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41831" i_stop="41486" i_length="346">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.156" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41485" g_stop="41444" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="605" r_length="42" r_score="0.595"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E722257" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46914" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42902"/>
          <exon e_start="41838" e_stop="41832"/>
          <exon e_start="41485" e_stop="41444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTGTCTTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGACATTATTCCCAGATTTTTGTTCTCTCTTGCGTTGTTATATGAGCTCCCAGTTACCTAATTTCTTTATGGGAGGAAATATCATAAATCAGTGATTTATATAAGCCCATTTCTTCTTAGTTTTGGTTGTTTTGTGGTTTATAGTCCTGAATTAGTGTGGCATTAAAATTTGCATGCAACCCTTTAGGTCGAGAATATTGCTAAATGAGTCATAGAGTAGACAAAAGTGCAAGGTACAGTCAACTGCTAGAGTGATGTTCCTCACTGTATTTGTGGGTTTTCTTCTGGGCTGTCTTCTTATTTAGCCGATGGAGAGGTAATAGGTATCCTGTGAAATTGTTGATGGAGTGTTCACCTAACACTATAACATGTTAATCTATGCGTAATCAAACCATGTGGCAACTTTATCATAAAAACAAGACAAGTAAATTGAAATGGATGGAGTAATTTTTATGGAATAATTAGGTTTTTGTTTTAGTTGTTGACTTGTGATGACAAATCAAAGGTTTCTTATCTTCTTTAGGTGCTTTGTTTTTAATCTGTGGATATCTTATTGATTTTTTAGAGCTTCCTGATTCTGTATGCTTATTCACTTGTTTGTCAAGCAGGATGAGAAGTATATATGTTCTCTATATAATGAAATGACTAAAGATTTTTTTTTGAATTGAAAATTACAGAGAAAGAGTCTGTTTTTAAGAAATATAGTTTTACTGTACAAAATAGATATGGGAGTACATATTTTGAATACAGGGAATACGATTCTTTTTGGTTTTCACCGTCCTCCGAAAATAATTATAACTTATAAATATACATAAATTATACACTAATGATGTATAATTTTGCGTATATTATACATCCGTAGATAATTATTTTGGACGGTGGCGATACAGTGTGAAAATCCCCTTTTAATGTTTAAGAATGGGTCCAAAACCCCAAGAACATGATAGTTCTAATGGGATCTTCCATGTTTGAACTCTTTCTTCTTTGATTTTGATTTTCTTTGGAATTTTGTTTTGATTTTGAGAGCTTTTCTCTGGTTGTTCTCTTTGATTTGTGAATCAAAGATTTATCATCTTCAGAGAAATGGTGAGGCTTCATCCGTGTGTTGAAATGTTTTACTTAAGATATTGAAGCTTCTTATAAATTGTGGACAAAATACAAACAAATTTATAGAAAAAAACTTCATGAAATGAGAAAAGCATTAGAGATGGAATATATGATAGATATCTCCATTTATTAAGCATATATTCCTTATGTCTGTTGATGTGGATGGTGTATATATCAGTATTTGCTCGTATCACTTGAACCCCTCTCGTCGGAAAATTATATGGTTAAATTTTTATCAATAATAAAAAATCACTATTTTATCGTTGTAATTTTCTGTTGAAAAATATTTAGAACGTGATTCCATAGATATTTTGATTGAACTCAGTAAGAAGAGAAAAAAATAGTAGTATTTCCACACATAAAAAAA</genome_strand>
        <mrna_strand>CTCTTCTGTCTTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAG.................................................................................................................................................................................................................................................GTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGAATTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGATATTATTCCCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA..........................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465681" ref_strand="+" ref_description="SGN-E465681 [cPRO-21-N4]">
      <seq>gaaaagtcaggtgaatttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgattcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggatataagctgttgatccattgcgattttatcttgctttttcgttgttgaagcctgtgctacagacttgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattcttaagaagtgattaataaaagatacttgtgggttaaattttgtggacacttttatttggtcaaatgattgaaaatcccgcggatgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="46919" stop="42610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46866" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="57" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="232" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42922" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="469" r_length="237" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="496"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E465681" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAG-TGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATC</genome_strand>
        <mrna_strand>GAAAAGTCAG.................................................................................................................................................................................................................................................GTGAATTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGATTCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGATATAAGCTGTTGATCCATTGCGATTTTATCTTGCTTTTTCGTTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTCTTAAGAAGTGATTAATAAAAGATACTTGTGGGTTAAATTTTGTGGACACTTTTATTTGGTCAAATGATTGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436550" ref_strand="+" ref_description="SGN-E436550 [STM-63-M5]">
      <seq>gaaaagtcaggtgaatttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgattcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggatataagctgttgatccattgcgattttatcttgctttttcgttgttgaagcctgtgctacagacttgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattcttaagaagtgattaataaaagatacttgtgggttaaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="46919" stop="42658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46866" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="57" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="232" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42948" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="443" r_length="211" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E436550" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAG-TGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACT</genome_strand>
        <mrna_strand>GAAAAGTCAG.................................................................................................................................................................................................................................................GTGAATTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGATTCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGATATAAGCTGTTGATCCATTGCGATTTTATCTTGCTTTTTCGTTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTCTTAAGAAGTGATTAATAAAAGATACTTGTGGGTTAAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461005" ref_strand="+" ref_description="SGN-E461005 [cPRO-34-C11]">
      <seq>gaaaagtcaggtgaatttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgattcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggatataagctgttgatccattgcgattttatcttgctttttcgttgttgaagcctgtgctacagacttgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattcttaagaagtgattaataaaagatacttgtgggttaaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="46919" stop="42658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46866" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="57" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="232" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42948" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="443" r_length="211" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E461005" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAG-TGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACT</genome_strand>
        <mrna_strand>GAAAAGTCAG.................................................................................................................................................................................................................................................GTGAATTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGATTCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGATATAAGCTGTTGATCCATTGCGATTTTATCTTGCTTTTTCGTTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTCTTAAGAAGTGATTAATAAAAGATACTTGTGGGTTAAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436551" ref_strand="-" ref_description="SGN-E436551 [STM-63-M5]">
      <seq>gaaaagtcaggtgaatttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgattcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggatataagctgttgatccattgcgattttatcttgctttttcgttgttgaagcctgtgctacagacttgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattcttaagaagtgattaataaaagatacttgtgggttaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="46919" stop="42659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46866" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="57" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="232" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42949" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="442" r_length="210" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E436551" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAG-TGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACAC</genome_strand>
        <mrna_strand>GAAAAGTCAG.................................................................................................................................................................................................................................................GTGAATTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGATTCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGATATAAGCTGTTGATCCATTGCGATTTTATCTTGCTTTTTCGTTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTCTTAAGAAGTGATTAATAAAAGATACTTGTGGGTTAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288157" ref_strand="+" ref_description="SGN-E288157 [cLES-7-D11]">
      <seq>tcgtatccaatatctcgttggatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgaatcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggagataagtgttcatccattacgattttatcttgctttttcattgctgaagcctgtgctacagacttgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattattaagaagtgattaataaaggatacttatgggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="46901" stop="42661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46601" g_stop="46578" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="108" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="198" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43157" g_stop="42954" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="402" r_length="204" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E288157" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46601" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTG</genome_strand>
        <mrna_strand>TCGTATCCAATATCTCGTTG-GAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGCTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716799" ref_strand="+" ref_description="SGN-E716799 [FB18AC07]">
      <seq>attcagagaaaagtcaggtttttttgtagaatcaaagtcttcgtatccaatatctcgttgccatgtcggacgaggaagttgttgacccaaaggcgacaatggaagtatcttgcaagcctaagtgtgtaaggcaactaaaggattatcaggcatgtactagaaggatagaaggtgatgaatcagggagcaagcattgcactggacagtattttgattattggcaatgcattgacaaatgtgttgccccaaagctatttgaaaaactcaagtaacatggagataagtgttcatccattacgattttatcttgctttttcattgttgaagcctgtgctacagaattgcaatcccttcaatcaacttagttgccgcatggaaaattttgtactatgcacattattaagaagtgattaataaaggatacttatgggttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="47182" stop="42661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46882" g_stop="46866" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46624" g_stop="46578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="64" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44446" g_stop="44362" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="149" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43331" g_stop="43242" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="239" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43157" g_stop="42962" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="435" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="451"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E716799" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46882" e_stop="46866"/>
          <exon e_start="46624" e_stop="46578"/>
          <exon e_start="44446" e_stop="44362"/>
          <exon e_start="43331" e_stop="43242"/>
          <exon e_start="43157" e_stop="42962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGAGAAAAGTCAGGTTGCTCCTCTTCTACGCATTTGATCTGCTTCCTCTTTATGTGTTCATTCGATCTGCATAATATTAGGTTTTGCTATTTTATCTTGTTTTGTTGCATTCGCACACATGGAGAATTGTGTTTTTTTTGCTTGATAGCTGGTTAATTTTGTATTGATTAGTGTAAAAATTGCATTTGCTGGTGAATTCGTAGAATCAATGTCTTCGTATCCAAAATTGATTAGTGTAAAAATTGCATTTGCAGGTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCATGTGAGTACTGTTGATCTATTTATAATGAAACTATTCTCTCTTTATTAAAGTAATTAAATTTTGATGTGATTTATGTGTTTCGTTTCGTTTGTATAATCCATTTATTCTAATAGGATTTCACTGTTTATGAGTAATTTATTCTCCTTACCATATATGTGAGTGATTTTTAAATAGTTTTTCAATTATACACTGTAGAAATTGAGATTCCCTAAATAGTTTATATAGAATTTTGATCTGGAACAGTAAAAAAATAGAAATAAAATCGTCATCTTTATTTTGTCCAAGAGCAAAGTGTTAGTTGGACCCTCTATGTTGAGAGAAATGAAGTTGATGGAAATTCTATCTAGAACAGTAAAAAAACACAAATAGAATGGTCATCTTTATTCTGTCAAAGAGCAAAGTGTTAGTTGGACCTCTATGTTGAGAGAAATGAAGTTGCTGGAAATCCTATTGTAATATTATTATTTTTTTGTGATTTTTCCCATTGTTTATATAATGTAGAAAAATAGCAGTTCAATTATGCTTGCAGCCACCAAAAAGAGAGGAAAAAATAGTTTGATTTTACTCAAAATGTTTTTGCTTTCTAATGTGCAAAGAATTACCATTTTTTGTATGTCTGTTTAAAAAGTATTGACTAGTGAGCTAATATTCCGAAGTAGAAGGATGAATTATGTATCTCTTCAAGAAGCAGTACGTCATTTATTGAAATACCTTCATTGGATTTGATTGGAGAGTGGGTGCGAGTGTCCTAGTACCAATTTATCCTGTTATTTTGGATTCGGTTAATAAAGTCCAACATCAATGTCATGGGACTAAAGTCTTCAACCATGTTAGCTTGCTATCGTCTATTTCTTTTGTTGCATAAAACATTTTAAAATTTCAATTCTCTAGATCTTAGACATTTATCTTTAAAAATGAAAAATACGTGGAAGTTCCTTAAATAATATGCACAGACTTCAAGTGTGCCACAGATTCCAACAGATATATATGTATTTATGCGCATATCAGGCAATTAGCATGTATATGGCGCTATGCTGAGCAAATGCACACTTACCGAACTTCTACAGATACTACTTGATTTCATGTGTTAATCAGAAGTGCTTTGAGCCTTTGACATAATCCTTATCCTCCCTCTGATGCAACAGCTAATTATTTTTACCTTATTCATTCATTGGTGTAACTTCATGTATTAAAGATTACTTTCATGTGTCAATTCTAATAATTTGTACGCAACTATATATTCTACCCTATTTGATTGGTTTACAACTCTATCCATTTATTAGCCGTAGTGGATAGTATTATATTGCTTTTAGTGTGAAGTAAAGTTTTGGAGTGTACATTCCGTGTTGAAACCTTCCATAAATGCTCTGTCAAAGGCTCAACTTCTTTGTGATTGATTTTTTAAAAATTTGTTTTATGCACAAGTATTTGCTTGTGATATACCATGTTCTCAGTGTGTTTGTTGATGTAACTAGTTGGCGAGAAACACCATTGTCCATTTTTACTTAGCTTACATTAAGTTAATCGAAGGAGCACTGCAATGAGATGTTTGTGAATAGTGTTGGCCCTCTTCGTAAGCTTGTATTCCTTGCAGACATTATAGGTGGAGAGAAATTTTCATGCTATTTTTCCTAATACTCCCTCCGTCCGATTTTATGTGGCACAATTTGACCTAGCACGGAGTTTTAAAAAAATGAAAACTTTGAATTGTTTACTAAATTGTCCTTCAAAAGTAGACTCACTTTTCTCTTTTCTCATAAACGTATTAGAGTACTATGTAAAATTAAGTGGGACCAACAAGGGTAAAAGAGGAATTGCACCTTTAAATACTTACCATATAAGAAAATGTGACATTCTTTTTGGGACTGAGACAAAAAGGAAATGGTGCCACATAAAATGAGACGGAGGGAGTAACTATTATGTCAGAAGCATCTGATATTATTCTTACACGATAGTCCTCAATGACTTACAAATATCGAGCTCATGTTACAAACACAGAGTTAGACTGTTGTAATTAATGACAAGTGACACTCAGTGACTCCCCCCCCCCCCACCACCACCACCACACACACACACACACAAGTATTGCCATCTCTTTGAAGATAAATTGCTGTTGGTTTCCTTTGTTCAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAGGTGATTCCCACCATAACAAAACAGCCTTTCAGTTATATCAAAGGGATTTTCTTGTTCTTATATAATTGTTATTGGGTGAGCTGTAACTTGGACTTGATTGTTTGCGGTGGTGGAAGGCTAATTTTTATTATTGTTAACATTATCCTGTACGGTCTCCACAAGAACTCAGAGTGACACAAAAATGTCTTGGCAATGTCATGTTAGACCTGAAAATTGTAAATTTGGAAAACATCAAGTACTATGGCCGACATATGACCTAACATAGTATGTATCACTTGAACTTTCAGCTACTCTAATTACCAAATCAACTGATATAGTAAGCCAGGAGAATTTTCTTGTTATGTCACTCTAATGGGATGAACCAACATGTGACGAAGAGACTTAATCTGTAACTGCTTGGTCTTTCCAAGTAGCCAAAAAGGCATGTTTATGGGCCTCCAAGTACACCCACCGACCTCCTCTCATATTGGCTCTCCAGATTCAACTGGTCAGCAGAATGCTAGTATTTCTATGATCTTTTTTGTTTCCTCTGCTCATTTTTCTGTATCATATGTGTCTATCGGGTCCATTGTTCTTTCTATTGCCAACAATTTGCTGTAACAATTTTTTATGAAGAACACAGTGCTGTAAGGTTTTGATTATCAAAGACTCAGAGTTTTAATTTCGATCCCGTTAAACCTTTCCGAGTTAGTTTTGGCTTTCAACTTCTTGTTATTCATCTACTCCCTCTGCCTAAATCTTTTAATCAACTTAATGGTTTGTGCAAAGGATGTGCTTTGGACATGGGGAATCTGGGATTTTTGTGTGTTATGCTTGAAGGATGATATCTAATTGATTTGTGACAACTACCACCTTAGATAACTGTACAGTAGCATTCGTTTGATCTTCAGAACAATTGCATTTAACTGTTCTGTGCACTTCCTGAACATTTATGTCTCGTTCATTTGTTCTGAATTTGTGCAAATGTATTTAAAATTTGTACCGACTTTCATACTTTGTGGCTCTTATTTGGGTATTTTGCATCCTACAGGCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGTGTAAGCTCTATTTCTCTATTCTCCGTTGTTGCTCTATTTAGCATTTCGTTTTGTTTCTAAACTTTTTATGGAATTGTTACACAGGTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAA</genome_strand>
        <mrna_strand>ATTCAGAGAAAAGTCAG.................................................................................................................................................................................................................................................GTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT....................................................................................GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGAATTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718211" ref_strand="+" ref_description="SGN-E718211 [FC04AB02]">
      <seq>aatcggccgaattgcttcgccatccgcagctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56345" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56060" g_stop="56012" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.82"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="95" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="180" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49454" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="500" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49453" i_stop="47957" i_length="1497">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47956" g_stop="47934" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="523" r_length="23" r_score="0.696"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47933" i_stop="47074" i_length="860">
            <donor d_prob="0.568" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47073" g_stop="47050" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="547" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E718211" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56060" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49454"/>
          <exon e_start="47956" e_stop="47934"/>
          <exon e_start="47073" e_stop="47050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACCGTCTCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAATCGCGTAAAACAATATTGCAAATTAATAAGTCATAATGAAATTGATTATAATTTAAAGTACTAAATCATGCTAAAAATAAGTTTAGTAAGTACTAGTTACATGATTAAATATTAAAAGAAAGTAAAATTAGATCATGTATTTTAATTGTCTAAATCTATGTATAACTAAAAAATAAATATTCAATATTATTGTCATTCTTAGTGTTGAATTGATTTTCTTTTTGTATTAGTATTAATTTGATTTTTATTTAAACTTTATTATATTTACCAACATGTATGGACTATAATCTTTATTAGATCATTAAGAATTTTAACTTCCAAACATGAAATAAATATATTAAAAGATTAAAACTATGTAAAAGCATAAGAGATAATTTAAAAATTATATCAAAGTAGTTATTTTACGTATAAAATAAAAATTTTAAAATTATATATATAATGTCGGGTTGGTTTGGTCCCGGGTTGTGTTTCTTTTAGCTGAAATCAAACCAACCCAAATATAATCGATTTTTTTCAACACTAAATCACTAGTCAATTTTTTTTTAAAGATTTGACTCAATTTACAATTCGATTCGATTTTGTACAACCTACTCCATACCTCATTGAAAAATTACATAAATTAATATATTTTAAAAAATAGTTACTGATTTTAGCGATATTTTTTGTTTATTACTATTTATAACAATATTGTGATAAATCTGTAATATGTATTAAAAATGAATTATGTATGCAATATATTTGAATTATAATTATTTTTGAAATATATTGTGTTTGTTTGGTAAAAATTATCATATTGTATTATAAATATATTAAAATATGTGATAAATGTATTATTTATTATTATAACTTGTTTTATAAATAAACTAAAAATAATCAAATAAAAAAATA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721832" ref_strand="+" ref_description="SGN-E721832 [FC15BG04]">
      <seq>gggcgattggcggccaatcggccgaattcctcttcgccatccgcagctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56349" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56049" g_stop="56012" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="65" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="112" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="197" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="287" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49467" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="504" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49466" i_stop="47957" i_length="1510">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47956" g_stop="47934" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="527" r_length="23" r_score="0.696"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47933" i_stop="47078" i_length="856">
            <donor d_prob="0.568" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47077" g_stop="47050" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="555" r_length="28" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E721832" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56049" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49467"/>
          <exon e_start="47956" e_stop="47934"/>
          <exon e_start="47077" e_stop="47050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAATCGCGTAAAACAATATTGCAAATTAATAAGTCATAATGAAATTGATTATAATTTAAAGTACTAAATCATGCTAAAAATAAGTTTAGTAAGTACTAGTTACATGATTAAATATTAAAAGAAAGTAAAATTAGATCATGTATTTTAATTGTCTAAATCTATGTATAACTAAAAAATAAATATTCAATATTATTGTCATTCTTAGTGTTGAATTGATTTTCTTTTTGTATTAGTATTAATTTGATTTTTATTTAAACTTTATTATATTTACCAACATGTATGGACTATAATCTTTATTAGATCATTAAGAATTTTAACTTCCAAACATGAAATAAATATATTAAAAGATTAAAACTATGTAAAAGCATAAGAGATAATTTAAAAATTATATCAAAGTAGTTATTTTACGTATAAAATAAAAATTTTAAAATTATATATATAATGTCGGGTTGGTTTGGTCCCGGGTTGTGTTTCTTTTAGCTGAAATCAAACCAACCCAAATATAATCGATTTTTTTCAACACTAAATCACTAGTCAATTTTTTTTTAAAGATTTGACTCAATTTACAATTCGATTCGATTTTGTACAACCTACTCCATACCTCATTGAAAAATTACATAAATTAATATATTTTAAAAAATAGTTACTGATTTTAGCGATATTTTTTGTTTATTACTATTTATAACAATATTGTGATAAATCTGTAATATGTATTAAAAATGAATTATGTATGCAATATATTTGAATTATAATTATTTTTGAAATATATTGTGTTTGTTTGGTAAAAATTATCATATTGTATTATAAATATATTAAAATATGTGATAAATGTATTATTTATTATTATAACTTGTTTTATAAATAAACTAAAAATAATCAAATAAAAAAATA</genome_strand>
        <mrna_strand>TCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624674" ref_strand="+" ref_description="SGN-E624674 [GI|488711]">
      <seq>ctagaacagtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcaacactggaagtaagttgcaaacctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaagggtagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcattgacaaatgtgttgctgcgaagttatttgaccacctcaagtaacaaggatataagttgttgatcccttgcaatttatctgtttttttgttgttgaacaagtcattaccatattattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56024" g_stop="56012" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="60" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="235" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49467" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="453" r_length="218" r_score="0.940"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49466" i_stop="47102" i_length="2365">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47101" g_stop="47056" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="498" r_length="45" r_score="0.674"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E624674" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56024" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49467"/>
          <exon e_start="47101" e_stop="47056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTT-AAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAATCGCGTAAAACAATATTGCAAATTAATAAGTCATAATGAAATTGATTATAATTTAAAGTACTAAATCATGCTAAAAATAAGTTTAGTAAGTACTAGTTACATGATTAAATATTAAAAGAAAGTAAAATTAGATCATGTATTTTAATTGTCTAAATCTATGTATAACTAAAAAATAAATATTCAATATTATTGTCATTCTTAGTGTTGAATTGATTTTCTTTTTGTATTAGTATTAATTTGATTTTTATTTAAACTTTATTATATTTACCAACATGTATGGACTATAATCTTTATTAGATCATTAAGAATTTTAACTTCCAAACATGAAATAAATATATTAAAAGATTAAAACTATGTAAAAGCATAAGAGATAATTTAAAAATTATATCAAAGTAGTTATTTTACGTATAAAATAAAAATTTTAAAATTATATATATAATGTCGGGTTGGTTTGGTCCCGGGTTGTGTTTCTTTTAGCTGAAATCAAACCAACCCAAATATAATCGATTTTTTTCAACACTAAATCACTAGTCAATTTTTTTTTAAAGATTTGACTCAATTTACAATTCGATTCGATTTTGTACAACCTACTCCATACCTCATTGAAAAATTACATAAATTAATATATTTTAAAAAATAGTTACTGATTTTAGCGATATTTTTTGTTTATTACTATTTATAACAATATTGTGATAAATCTGTAATATGTATTAAAAATGAATTATGTATGCAATATATTTGAATTATAATTATTTTTGAAATATATTGTGTTTGTTTGGTAAAAATTATCATATTGTATTATAAATATATTAAAATATGTGATAAATGTATTATTTATTATTATAACTTGTTTTATAAATAAACTAAAAATAATCAAATAAA</genome_strand>
        <mrna_strand>CTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCAACACTGGAAGTAAGTTGCAAACCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGGTAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATTGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTATTTGACCACCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGTTTTTTTGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAAATGATTAATAAATTATACTCGTGGGTTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGAAC-CCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714422" ref_strand="+" ref_description="SGN-E714422 [FB11BF06]">
      <seq>gctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccttcgggggggggccgggacccattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56331" stop="24773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56031" g_stop="56012" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="67" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="152" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="242" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49452" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="474" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49451" i_stop="47970" i_length="1482">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47969" g_stop="47934" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="510" r_length="36" r_score="0.694"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47933" i_stop="47488" i_length="446">
            <donor d_prob="0.568" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47487" g_stop="47459" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="539" r_length="29" r_score="0.483"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E714422" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56031" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49452"/>
          <exon e_start="47969" e_stop="47934"/>
          <exon e_start="47487" e_stop="47459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAATCGCGTAAAACAATATTGCAAATTAATAAGTCATAATGAAATTGATTATAATTTAAAGTACTAAATCATGCTAAAAATAAGTTTAGTAAGTACTAGTTACATGATTAAATATTAAAAGAAAGTAAAATTAGATCATGTATTTTAATTGTCTAAATCTATGTATAACTAAAAAATAAATATTCAATATTATTGTCATTCTTAGTGTTGAATTGATTTTCTTTTTGTATTAGTATTAATTTGATTTTTATTTAAACTTTATTATATTTACCAACATGTATGGACTATAATCTTTATTAGATCATTAAGAATTTTAACTTCCAAACATGAAATAAATATATTAAAAGATTAAAACTATGTAAAAGCATAAGAGATAATTTAAAAATTATATCAAAGTAGTTATTTTACGTATAAAATAAAAATTTTAAAATTATATATATAATGTCGGGTTGGTTTGGTCCCGGGTTGTGTTTCTTTTAGCT</genome_strand>
        <mrna_strand>GCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGGGGGGGCCGGGACCCATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714585" ref_strand="+" ref_description="SGN-E714585 [FB11DE01]">
      <seq>gctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccctggggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56331" stop="24773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56031" g_stop="56012" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="67" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="152" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="242" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49450" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="476" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49449" i_stop="47969" i_length="1481">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47968" g_stop="47934" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="511" r_length="35" r_score="0.714"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47933" i_stop="47499" i_length="435">
            <donor d_prob="0.568" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47498" g_stop="47471" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="539" r_length="28" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E714585" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56031" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49450"/>
          <exon e_start="47968" e_stop="47934"/>
          <exon e_start="47498" e_stop="47471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAATCGCGTAAAACAATATTGCAAATTAATAAGTCATAATGAAATTGATTATAATTTAAAGTACTAAATCATGCTAAAAATAAGTTTAGTAAGTACTAGTTACATGATTAAATATTAAAAGAAAGTAAAATTAGATCATGTATTTTAATTGTCTAAATCTATGTATAACTAAAAAATAAATATTCAATATTATTGTCATTCTTAGTGTTGAATTGATTTTCTTTTTGTATTAGTATTAATTTGATTTTTATTTAAACTTTATTATATTTACCAACATGTATGGACTATAATCTTTATTAGATCATTAAGAATTTTAACTTCCAAACATGAAATAAATATATTAAAAGATTAAAACTATGTAAAAGCATAAGAGATAATTTAAAAATTATATCAAAGTAGTTATTTTACGTATAAAATAAAAATTTTAAAATTATATATATAATGTCGGGTTGGTTTGGTCCCGGGTTGTG</genome_strand>
        <mrna_strand>GCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGGGGGGCCGGGACCCCATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239491" ref_strand="+" ref_description="SGN-E239491 [cLED-23-D6]">
      <seq>tctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatgtctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttggtgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56025" g_stop="56012" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49441" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="479" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49440" i_stop="47957" i_length="1484">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47956" g_stop="47938" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="498" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E239491" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56025" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49441"/>
          <exon e_start="47956" e_stop="47938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAA</genome_strand>
        <mrna_strand>TCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATGTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGGTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606058" ref_strand="+" ref_description="SGN-E606058 [21993]">
      <seq>ctagaacagtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggatgaggaagttgttgacccaaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctcaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatattattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56024" g_stop="56012" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="60" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="235" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49467" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="452" r_length="217" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49466" i_stop="47960" i_length="1507">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47959" g_stop="47938" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="474" r_length="22" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E606058" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56024" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49467"/>
          <exon e_start="47959" e_stop="47938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAA</genome_strand>
        <mrna_strand>CTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGATGAGGAAGTTGTTGACCCAAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223606" ref_strand="+" ref_description="SGN-E223606 [cLEL-14-F7](-)">
      <seq>gtaagttgcaagcctaagtgtgtaaggcagctaaaggaggtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttcctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="53493" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53193" g_stop="53149" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="136" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49683" g_stop="49453" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="367" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49452" i_stop="47957" i_length="1496">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47956" g_stop="47938" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="386" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E223606" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53193" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49453"/>
          <exon e_start="47956" e_stop="47938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAG-TATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATATATCACAAGTTGTACCTCCCAGACAAAAGTTAATACATATAGATGAAACTTTTCTTGTCCATCAAAGTTCCTTAACTTTTCTTTTTCCTACAAGTCAAAAATTTAAAATATTTTGAGATAGTGAACGTACTCGATTGACCATAAATTCGACTTTATAGGCAACACAAATTTTTTCTTGCAATTTATTTTCAACTTAAAATTATATTTTTAAGAATTATCGAAAATACACAAAATTGGACACTTTTACATGACCGGATTGGTTTGGGTTTTTCAAATATTAAATCAAATTATTTGTGTCGGATTTTTGAATTTACAAACCAAATCAAAGCAATAAAACTCGAGGTTTTCAACTTCGGATTTTTTCAGTAAAGTATTCATACAAACATATAATTTACTTGTACTTTAAATATTTCTTTATTTCTACTAAAATGCAACTATCTAAGTTATTTCTCAAGAAAATAACACAAAATATTATATGATTAATGACACTAAAATATCCAACAAAAAAATAAATAATAAAA</genome_strand>
        <mrna_strand>GTAAGTTGCAAGCCTAAGTGTGTAAGGCAGCTAAAGGAGGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTCCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373663" ref_strand="+" ref_description="SGN-E373663 [TUS-33-A22]">
      <seq>tctagaacagtcagttgcacttgcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56148" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56025" g_stop="56012" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55847" i_length="165">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55846" g_stop="55788" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="73" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="158" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="248" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49444" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="488" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49443" i_stop="48475" i_length="969">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48474" g_stop="48459" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="504" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E373663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56025" e_stop="56012"/>
          <exon e_start="55846" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49444"/>
          <exon e_start="48474" e_stop="48459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACTGTATTTGTGCGTTTTTGTTTGCACTTTACTCGTTATACCGTATGTTCCTTCTTATTTGGTCGATGGAGAGGTAACAAGTATCGAGTGAAATGATTATATTCTCACTATGCTGCGGGAGGGGTAATAGCCATTAGAGATGAAGACAGAGGAGACGTCTTATCCAAAATGAATCGGTTGTCTTGTCTCAAAAATGGCTAAAAATATGGTCATGCAAATAGAAAGTTTAGCCTACGTATTTACTTTATTGATGTTGGGAAGGAAAATATTCAAGTAATGGTTGAAAAGTGCAAATTGATAGGAAGTACATAAAACGGCCTAAGAAGTACCAAATTTTCAATGGACATCACCACCTTACCCTCACATGATAGGCTTTCAAATGCAATTGTGGCAAATCAATAAATTAAATTGTTTAATCTCTAATTGATAGAATAATTTTAATCTTTGGACTATTGATGTAATTTAACATCGTTAGGACAATGCAAATGATTTTAGAACGAGTGAGCCTACATTTTAACAATCCGAATATGGGCACTATTGTCTTTCATATCATGCTTTCTACTTTGGATATCACACTTTTTACTTTGGAGATGGACTGATAACAACTACAATAGTCATCAATCTGGTCTTTTAATATCCGGTAAAGGATTAATTTCACAATGATATCGTAACGTGTTCTTGATTATTTTAACCCCATATAATAAGAAGTTCTGAAAAAACTAGTTCTAGAAAATTCGTTAGACGCGCAGGTCTTGTTGCTCATCGGGCATAAATTAGTTTTTACTTTTTACTATTAAATATAATTTTATTATATTTGAAGACAACGAAATTAAATA</genome_strand>
        <mrna_strand>TCTAGAACAGTCAG.....................................................................................................................................................................TTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558439" ref_strand="+" ref_description="SGN-E558439 [17779]">
      <seq>gaacagtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaggaagttgttgacccgaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctcaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatagtattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttatttgttcgaattattgaggatctcccggatgttattccctggatggcttcatgggggaaaacgtcttgtctggtgctcactgaatcctgcgcatgtattgattgagttattttgagtagacagaagtgcaaatgcagtcagctgcttgttctattcactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="48989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56021" g_stop="56012" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="57" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="142" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="232" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49292" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="625" r_length="393" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="637"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E558439" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56021" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA---TTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCT-GATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACT</genome_strand>
        <mrna_strand>GAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCGAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATAGTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTTTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGGATGGCTTCATGGGGGAAAACGTCTTGTCTGGTGCTCACTGAATCCTGCGCATGTATTGAT---TGAGTTATTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571725" ref_strand="+" ref_description="SGN-E571725 [30767]">
      <seq>caggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctcaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatagtattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttatttgttcgaattattgaggatctcccggatgttattccctgatggcttcatgggggaaaacgtcttgtctggtgctcactgaatcctgcgcatgtattgattgagttattttgagtagacagaagtgcaaatgcagtcagctgcttgttctattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="50203" stop="48994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49903" g_stop="49811" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49683" g_stop="49292" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="485" r_length="392" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E571725" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49903" e_stop="49811"/>
          <exon e_start="49683" e_stop="49292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA---TTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACT</genome_strand>
        <mrna_strand>CAGGCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATAGTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTTTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTTGTCTGGTGCTCACTGAATCCTGCGCATGTATTGAT---TGAGTTATTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417373" ref_strand="+" ref_description="SGN-E417373 [STM-25-G12]">
      <seq>gtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaaggaaagttgttgacccaaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctgaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatattattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttatttgttcgaattattgaggatctcccggatgttattccctgatggcttcatgggggaaaacgtcttgtctggtgctcactgaatcctgcgcatatattgatgaatgagttatttttgagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56016" g_stop="56012" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="52" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="139" r_length="87" r_score="0.894"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="229" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49343" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="573" r_length="344" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="594"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E417373" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56016" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACG-AGG-AAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA---TTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTT</genome_strand>
        <mrna_strand>GTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAAGGAAAGTTGTTGACCCAAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTGAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTTTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTTGTCTGGTGCTCACTGAATCCTGCGCATATATTGATGAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417374" ref_strand="-" ref_description="SGN-E417374 [STM-25-G12]">
      <seq>gtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctgaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatattattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttatttgttcgaattattgaggatctcccggatgttattccctgatggcttcatgggggaaaacgtcttgtctggtgctcactgaatcctgcgcatatattgagaaatgagttatttttgagtaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56016" g_stop="56012" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="52" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="137" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="227" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49343" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="571" r_length="344" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="593"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E417374" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56016" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA---TTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTT</genome_strand>
        <mrna_strand>GTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTGAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTTTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTTGTCTGGTGCTCACTGAATCCTGCGCATATATTGAGAAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594678" ref_strand="+" ref_description="SGN-E594678 [37934]">
      <seq>ctcctcttcgccatccgcagctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaggaagttgttgacccgaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctcaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatagtattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttctgaaccctttatttgttcgaattattgaggatctcccggatgttattccctgatggcttcatgggggaaaacgtcttgtctggtgctcactgaatcctgcgcatgtattgatcgagttatttcgagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56350" stop="49036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56050" g_stop="56012" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="86" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="171" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="261" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49354" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="594" r_length="333" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E594678" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56050" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA--TT-GGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTG</genome_strand>
        <mrna_strand>CTCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCGAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATAGTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTCTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTTGTCTGGTGCTCACTGAATCCTGCGCATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446044" ref_strand="+" ref_description="SGN-E446044 [cSTA-19-D10]">
      <seq>gtcaggtgattttgcagaatcgaagtcttcgtttccaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcaacactggaagtaagttgcaagcctaagtgtgtaaggcaactaaagaactatcaggcatgtgctaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctttgaagttatttgaccacctgaagtaacaaggatataagttgttgatcccttgcaatttatctgctttttcgttgttgaacaagtcattaccatattattcctcactgtgctgctgacttgcaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaaatgattaataaattatactcgtgggttaaattttttgaaccctttatttgttcgaattattgaggatctcccggatgttattccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56016" g_stop="56012" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="52" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="137" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="227" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49410" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="504" r_length="277" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E446044" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56016" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAA---TTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGAT</genome_strand>
        <mrna_strand>GTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTTTCCAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCAACACTGGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGAACTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTTTGAAGTTATTTGACCACCTGAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTGCTTTTTCGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGCTGACTTGCAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAATGATTAATAAATTATACTCGTGGGTTAAATTTTTTGAACCCTTTATTTGTTCGAATTATTGAGGATCTCCCGGATGTTATTCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373662" ref_strand="+" ref_description="SGN-E373662 [TUS-33-A22](-)">
      <seq>ttctagaacagtcagttgcacttgcaggtgattttgcagaatcgaagttttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattaaaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttattttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56148" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56026" g_stop="56012" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55847" i_length="165">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55846" g_stop="55788" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="74" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="249" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49429" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="504" r_length="255" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E373662" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56026" e_stop="56012"/>
          <exon e_start="55846" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTC</genome_strand>
        <mrna_strand>TTCTAGAACAGTCAG.....................................................................................................................................................................TTGCACTTGCAGGTGATTTTGCAGAATCGAAGTTTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAAAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATTTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712418" ref_strand="+" ref_description="SGN-E712418 [FB04DC01]">
      <seq>aacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="24785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56020" g_stop="56012" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="56" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="141" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="231" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49429" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="486" r_length="255" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E712418" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56020" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTC</genome_strand>
        <mrna_strand>AACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347619" ref_strand="+" ref_description="SGN-E347619 [cTOF-26-H23]">
      <seq>cgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="49976" stop="49143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49676" g_stop="49433" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E347619" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49676" e_stop="49433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAA</genome_strand>
        <mrna_strand>CGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356702" ref_strand="+" ref_description="SGN-E356702 [cTOS-21-M7]">
      <seq>tctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttaaattggacccttttattcgttcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56025" g_stop="56012" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49434" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="486" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E356702" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56025" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGA</genome_strand>
        <mrna_strand>TCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTAAATTGGACCCTTTTATTCGTTCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354446" ref_strand="+" ref_description="SGN-E354446 [cTOS-17-N15]">
      <seq>tctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56025" g_stop="56012" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49434" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="486" r_length="250" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E354446" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56025" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGA</genome_strand>
        <mrna_strand>TCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298958" ref_strand="+" ref_description="SGN-E298958 [cLET-42-G20]">
      <seq>cgcagctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatacgtcgtgggttgaaattggacccttttattcgctcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56335" stop="49143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56035" g_stop="56012" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="156" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="246" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49435" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="497" r_length="251" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E298958" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56035" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATAC-TCGTGGGTTG-AATTGGACCCTTTTATTCGTTCGAATTATTGAG</genome_strand>
        <mrna_strand>CGCAGCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACGTCGTGGGTTGAAATTGGACCCTTTTATTCGCTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242585" ref_strand="+" ref_description="SGN-E242585 [cLED-30-B16]">
      <seq>tcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaattnnnnnaaanaaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56329" stop="49141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56029" g_stop="56012" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="65" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="150" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="240" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49441" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="483" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E242585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56029" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATT</genome_strand>
        <mrna_strand>TCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242586" ref_strand="+" ref_description="SGN-E242586 [cLED-30-B18]">
      <seq>tcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggacccttttattcgttcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56329" stop="49142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56029" g_stop="56012" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="65" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="150" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="240" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49442" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="482" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E242586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56029" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAT</genome_strand>
        <mrna_strand>TCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723858" ref_strand="+" ref_description="SGN-E723858 [FC22AH10]">
      <seq>gaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaagggagtatcaggcatgtaccaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaatagatcatactcgtgggttgaattggacccttttattcgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="53548" stop="49145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="102" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="192" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49683" g_stop="49445" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="431" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E723858" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCG</genome_strand>
        <mrna_strand>GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAGGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACCAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAGATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283872" ref_strand="+" ref_description="SGN-E283872 [cLER-13-M13]">
      <seq>tgcagaatcgaagtcttcgtcttgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcatggcacaaacattgcactggacagtattttgattattggcactgcatctacaaatgtgttgctgcgaagttgtttgaccatctcaggtcacaaggatataagttgttgatcccttgcaatttatcttctttttggttgctgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaagagtgattaataaatcatactcgcgggttgaattggacccttttattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56127" stop="49148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55827" g_stop="55788" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="125" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="215" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49683" g_stop="49448" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="451" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E283872" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55827" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGT</genome_strand>
        <mrna_strand>TGCAGAATCGAAGTCTTCGTCTTGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCATGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCTACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAGGTCACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGCTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAGAGTGATTAATAAATCATACTCGCGGGTTGAATTGGACCCTTTTATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304713" ref_strand="+" ref_description="SGN-E304713 [cLEX-11-J13]">
      <seq>cgcagctcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatactcgtgggttgaattggaccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56335" stop="49156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56035" g_stop="56012" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="156" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="246" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49455" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="475" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E304713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56035" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTT</genome_strand>
        <mrna_strand>CGCAGCTCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334870" ref_strand="+" ref_description="SGN-E334870 [cTOE-3-J15]">
      <seq>tagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttggttgttgaacaagtcattaccatattattcctcactgtgctgaagacttgtaaccctttcaatcaacttggttgctgcatggaaaattttgaactatgcacatcttaaaaagtgattaataaatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56023" g_stop="56012" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="59" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="144" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49478" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="440" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E334870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56023" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATAC</genome_strand>
        <mrna_strand>TAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241261" ref_strand="+" ref_description="SGN-E241261 [cLED-26-B13]">
      <seq>tcattctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtccgacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56329" stop="49307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56029" g_stop="56012" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="65" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="150" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="240" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49607" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="317" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E241261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56029" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTG</genome_strand>
        <mrna_strand>TCATTCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231655" ref_strand="+" ref_description="SGN-E231655 [cLED-4-A10]">
      <seq>tctagaacagtcaggtgattttgcagaatcgaagtcttcgtctcgaatatctctttgccatgtcggacgaggaagttgttgacccaaaggcgacattagaagtaagttgcaagcctaagtgtgtaaggcaactaaaggagtatcaggcatgtactaaaaggatagaaggtgatgaatcagggcacaaacattgcactggacagtattttgattattggcactgcatcgacaaatgtgttgctgcgaagttgtttgaccatctcaagtaacaaggatataagttgttgatcccttgcaatttatcttctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="56137" stop="49307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56025" g_stop="56012" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55834" g_stop="55788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53233" g_stop="53149" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49900" g_stop="49811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49683" g_stop="49607" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="313" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E231655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56025" e_stop="56012"/>
          <exon e_start="55834" e_stop="55788"/>
          <exon e_start="53233" e_stop="53149"/>
          <exon e_start="49900" e_stop="49811"/>
          <exon e_start="49683" e_stop="49607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGAACAGTCAGGTTTACCCGTTGCTCCTCTTCTCTGCATTTTGATCTGTTTACTCTTTACTTTTTTCTTCCGATCTGCATATTTAGGTTTTGTTATTCAATATTTTTGTTTATTTTGTACATATGGAGGATTTTTGGTGTTTCAGCTGGTTAATTTTGTATTAATTAGTATAAAAGTTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCATGTGAGTAACTGTTGATCTATTGATAATGAATCTATTCCCTCTTCATTAGTAATTTGATTTTAGTTTTACTTTTGATGTGATTTATTTGTCTCATTTAGTTTGTAAAATCGATTCACTCTACTAGTAAGTTACAAATAGTATGTAACTTGTGTTCTCCATACCATATGTCTTAAATAGTTTTTTCGATTCTAAACTGTGGGTGTGCGGGTTTTAGGTTGTTAAAAATTGAGATTGCAATAAAAATAATGCAGAAGACTTTGATCTGGGGCAATTAAAAAGATAACAAACTCGTCATCATTAGTTCATCTTTATTTTTCTAAAGAGCGAAGTGCTTGACTTAACCAACTTGTGGTTTGTTCTTGATTGGAACTATAAGTTGAGAGAAGTGAAGTTTTTCGGAAATTTAATAATATTATAAAATTTTGTGATTTTTTCCCATTGTTTATATAATATAGCAAAATCAACAGTTTGATTGTACTGATTCGTTGTTAGTTTTCCAATGTGCAAATACTTACCAGGTTAATACATTTATTTAAGGCTTTACTAGTGATCTAATATTCCTAAGTAAGAAAAACAACATACCCCGTGTAATCCCCTAAGTAGTGTAATCCCATGGGTGTTGTCTGGGAGGGTGATGTTTACACAACCTTATCAAAGCAAGTATATAAGGGAAATACAATAGCAAAAAAAGTCATGCTGAAAAACAATTAAGAAGAGAAAAAGTGACAACAACAATCAATATGATAACTCAAGCAAAGGAAATAACAATAATACCACAATTGAAAAATAAAATAGTAGGAAAGTAATAGGAACAATACGGATAAGGAAATTAGACAACGTTAGACCACCTACTTACCTTCTGCCCTTAATCTCATATCTTCCTATCTAGAGACATGTCATGTTCTTTGTAAGCAGTAGAAGTGCCAAGCCTAAGTAGATGGATGAATTATGTTCTCTGTCATGGCTGGAAATTGTTTAAGTAGAGAGTGAGTGTGAGTATCCATACCCGAACCTATCCTGTTATATTTGGATTGTTACTAGTTTTAGGACTTCACCATAGCCTTCAACAATTAGAAGCTTAACTTACTTTACCTTTAATCCTGCACCTCGCGTTCATGATATCTATTCAACCGTGCGTCAGAGACACGGTCGAAGCACGCCCGTCCAGTGTGCTTCTTTCACGACATTCTGTAGTATAACTATCAGCTTATACGTTGTGACTGTATTGACTAACCTGATGTTATCTGTAAATGTTAGAAGTCAATTCTTTTTCAAGTTTCCACTTTCAATATCAATGTCATCGGGGTAAAATCTCTCAACCATGGTAGCATGCTCCCATTTCTTTCTTGGCATAGAACTTAAAATTTCAACTTGTTCTAAACGCGTAGCCATTTATTTTTGAAAATGAAACATACTTAATAGATTTTTTAACAATATGCACAGAAGGGTGCCACAAACTCCAGCGCATCTGTATGTATGTATGTATGTATGTATACATATATCAGGAAATATGGTGCACTGCTACTTACTGAAAATACAACAAGTTCTACTTAATTTCATTTATTAAATAGAAGTGCTTTGAGATAATCCTTATCCTTCCTCTGATGCAACTGCTTATTTTTAAACGTATCCTTTCTTTGGTGCAACTTCATGTATTAAAAAATACTTTCATGTCTCAATTTTAATATTTTGGACACAGCTGCATATTATTCTATAGATATTATTATATTTATTGGTTTTTAGTGAAAAGCAACTTTTCTAGTGTACACTCCATGTTGAAGCTTCCGATAAATCTATTCTGTCAGAGTCTTCTTCTTCTTGGTGCTTTCCTGATAACTAGTGTCAGAAGAATCTTATATTATTCTTAGAGCCTGTTTGAATTGCTTAGTTGATGTGCTTCTAAGCGCTTTTGTTGTGTTTCAGTAAAATAGTCCGTCAGTTAGAATTCCTAAATTGTGATTTTTGGCTTATAAGACTAAGCCCAAACAAACAGGCTCTTAGACTAATCATTAAAATGATTTACAAATATTCAGCCGTTGTTAAAATGGCAGTTAGACTGCGTTTTGGTAATTAATGACAAGTGACAACTCAGTCACTACTGAATTTGTTTTGGTAAGATACGTGAAAAAGCTTGAATGCAAATTTGATTAGTCTACAATCCCCTAATACCACTTCTCTAGTTGTATCTGTAATTTTATATGGGCAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAATAATTCTGCATGAAAGAAAAAAATACTTCTCTAGTTGTATCTGTAATTTTATATGGGTAAGTAATTTTTGAAGTATGCTTTACTCTTCAAGTTTTGGTGTATATTGTGATTTACATTCAGGATATTTTAATTTACACCCAAAAAAAGTAATTCTGCATGAAAGAAAAAAAATACTTGTAGGATAGTTTCTTCCAAGTTTGAGCTTTTGCTAATATTATCATCTCTTAGAAGATATATTGCTGATTTTTGTTTCTTGTTCAAGGTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAGGTGATTCCCAATGCAATGAAATAGCCTTTCAGATATTTCAAAAGCTTTTGGTTCTTATTTTAATTATTGGAACTATTACTTATCTCCTTTATTTTGGGTAGTGTGTAAGGCAACTAAAGGGGTATCAGTTGATTCCCAATGCAATGAAATAACCTTTCAGTTATTTCAAAAGCTTTTGGTTCTAATTTAATTATTGGAACTTTTATCTCCTTTATTTTGGGTGTTCAATACTTCCACTGATTAAACCAATATCAGGATGAGCTATGACATCGTTTATGTTAGTGAAAGGCTATTTCTTTTTTTGTAATTTTTAGCATCATCATACACTGTTTCATAGATGGGTATAGCAGTTGAATCTTCCTTTAGTTTGAGAATTCGAGACATTCTAGTGATAAGTGCCTTCAAATGGAACACAATGGTATGTTTCTTACCAATGCATCTGATCTTTTCCTACAGTTCAAAATTCAATGAAAAAAATTTGAAAATGAGAGATTTTCTGAAAAATTAGTAAAAAGTAGAATGAAAGACAATCCTATATTGACAAGGACAAACTTTTTTACAATTTAGTAATGCCCACACTCTTTCTTGTGTATCAAAGATCATCGAAATAAGCAACAAAACTATTTCAATAAAAAAATACTATTTACAAGGATTTCAATCAAGATACCTTAGCAAGATTCTAGTTCTTTCGTAAGTTCTTGTATTTAGTGTTGTGGGAATTTATCTCGTCGTCTTTTTGGGGTTGCTTTTTTCAATAAATACATTTCTTTACATAAGTTGTATTAGTAATCTGGGTTTATGGATGACTGCTCTTGGTATTGTTAGTCTAGCCTTAAACCATCGTTTATATAGAGACATCAACATAATGTTTTAGCTTGGTGGAAATGAATTCTTTTTCCTCAGGATCCTATTAGATAGAAACAAAGAACAAAATAACTAGAAAGGTTGTAAGAATACCCCTCTTCTAGATGGATCGTCTACAAAGCTATTCGTTTAAAGTGTATTCAGATCAAAAGCTCGAATGGCAAAAGAGGGAGGATTTGTGGCTTAGATCGTAGGTTCAAGCTCCACACCATGCAAAAGGAAGCCCCGTATTTAAGTGGTGAAGGGTAGAGTAATGATCATATGTCTGTAGTGCATTGTATGTCCCATGATAGGTCCCATTCTTCTTCTCTTCTCCAAACAAAGTCTATGATTATTCATATCTATGTTACCTTGATATCAAAGAAGAGTTCAATCAATCCTATGTTTCCATTCCAACCTTCCCATTTATCTGACTGTTGCTGAGCAGTTTATGGATATCACACGGACAGCCCCAGATGGTAAATTTTAATGTGGACAAATTTTCGTTGATCATGCGACACTCGGATTTGAACAGGGAGAAAAGGATTTGCAGTCCTCGCAGCTCTGGGCTCGCTGTCGTAAGTGGGCCTGTTTATGTCAACTACCCTCTAGGTTTTTTAAGTAGAAGACAACAAACTTATTAAATCTTTTTTTCTGCCTCAATTTTTTTTAATCAGTTCTTAGTTCACTTTTCCCTTTTCCCTTAAAACCATTTCTTCTGAACTAATTGAAATACACATAAATTTTTCCAAGTAAGAACCACAAAACCATTATTTTCCATAAATCAGACCTAAAACAATCCTCCCTAAAACATTGAAAACAAAGTGTTTTCTTACAAAAATACAAATCTGGAACTAAGTAAGTTAATACCTTTTCTATCTTTCATGAATCTAGTGTAGTTTCATATTTTATTTCTTCTGTACTGTAATTATGATCTTCACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTTTTGGAAGGATTCCAGAACAATGATGTCTCGTTTAGTTGTGCTAACTGTGCACCTCATATAACAATACAGTAACATATTTGATCTTCAGAACAATTGCGCATGATCTGTTTTTTTTTTTAATTTTAACTAATGGATGTGGAAGTATTGCACCTTAGAATGAAGGTGATATTCCTTCACTAACCTCCCTGGGAAGTATATATTACTTTCATCAAGATATACATGTATATTTTGTGTTTTTGTTTTGTCCGGCAGAGGGGACTTCATTTGTGGATTAAGTTTGATGGATATTTAGTCCACGAGGTGTATCATTTTCTATCTTGAAAAACACATTAAGTGTTAGTTAGGGTTGGTTATTTATCGGGTGCACATCGTTCCCACTGCTCTATGATGGTTAACTGTTGACCTGCTTTATTTATTGATCTGACAATTCTTTTTGGCAAATGTCACATTAATGTTTATTAAACAGGACAAGATTACTTGCACTTTGTCATTAGTTGCAGTCCCAAAAACTTTTAACTTGCAATATTTGATTATTTTCATCTTTCTGTTTGTCATATCCCCCTTCTTTCCCTTTTTCCTGTCTTTTGGCGGGGTGGGGGTGGATAATGAATTTCTGAAGAAGGCCAGCTTTGTTGCTTCAAAATTAGTAGTGGTTTTCTTACTTTATGGGTCTCATTCTGCATCCTACAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGTGTAAGCTCCCTTTTCCGGTTGTTTGGCATTTTTGTGTTGGGGTTTTCAGGGTGTGCTGCCTCTTGATTCTTTTCTCCGTTGTTGTCGTTTGTTGTTTTCTTACCTTTTCGTGGAACTGTTTGCACAGGTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTG</genome_strand>
        <mrna_strand>TCTAGAACAGTCAG.................................................................................................................................................................................GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT...............................................................................................................................GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708491" ref_strand="+" ref_description="SGN-E708491 [FA35DF08]">
      <seq>ccaataactcagagtggcacaaaaatgtcttgcattatgttatgttatgttagacctgaaaattttatatttggaaaatatcaaatattatgaacataatatgtactgattccaggacctactactcttaagtatgtactgattccaggatctacttcaaatcaattaaaatagcaggtcaagagaattttctttgcatgttactctgatgggatgaaccaatatagggacttcatctgtgattatttggtctctctaagaagccccccaaaaaaacatgtttctggcctccaaatacttctcgctctttagattaggcactctagatttcagctggttagcggttgctagtatttgtatgattttttgtttctttgttttgtgtgtagcatgttcttagatccaagaggaattgcaagacatcaatcagattttctcttcaaccttgccttttattctgtttgattgctttctatggggtccttttgttgtttgtatcgccaacagtttgctgtaagagtttttgatgatgaggagtgttgcttcaaggttttctttttccaagactctgatttctaatataattttgatgccattaaacattttccaatttattttttatttttctacttgttcttcatatactacctctgcaaacatctttgtaaccaacttaattatttgtgcaacgaatgtgctttggttggggagtctgagtttctaacttttggaaggattttggtctctctttctgcaagaagtgaaagattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="51665" stop="50291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51366" g_stop="50591" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E708491" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51366" e_stop="50591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTC-TAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTT</genome_strand>
        <mrna_strand>CCAATAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTAGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTGCTTCAAGGTTTTCTTTTTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACATTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCAAGAAGTGAAAGATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738237" ref_strand="+" ref_description="SGN-E738237 [LC12DF01]">
      <seq>cttgacatggccattacaactcttccctcctctcatcacctccatttctgcttcttctcttcatcatcttccaaattctcaatcactacacaattatgcctaaattttcccccgaagaatcgtatttcactcgtcatttgttcttcttctacttcgccccctccgccatcatcgtcgtcgccccaagtcagtgaacccactcccactgctgagtcctgtgtcaatgccggcctcgacctcttctctaaaggacgggtattatcttaattctgtttcaatttcatggcagaagaaattccttaattattatgtgattgcattgtttttcaggtctattataaacaatgataaggtctgcatatacattatgctttatgaaactcctcagtattgttgttgtattgttatttttgttgatttagacagagagtgtgtcgattgaggttcgtgaccataaaatttttgtttatttatatatatttatttttttaacaaagatatacttcaattgtagctacgccactagttgtagatatcaaataagttaagtaagtaaataaaagggattcgttttaatttatgcaatttaatttgataaatgacaatagaggttttgatttcgagttttaatatccccatcatttgatcatttgcagtcatattattcccttctatttgttacctaattttcctcaagtgttctccaagagtttgttgttgggtatttgacctgagtttcttagcataaataggttataaagtttccgtttttgagtagtcattttcttgtagaaaaaagtttagtactctataaattgaggctcgttccttctaacttaatcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59816" stop="61262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60116" g_stop="60962" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E738237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60116" e_stop="60962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACAT</genome_strand>
        <mrna_strand>CTTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318163" ref_strand="+" ref_description="SGN-E318163 [cTOA-29-O7]">
      <seq>ttgacatggccattacaactcttccctcctctcatcacctccatttctgcttcttctcttcatcatcttccaaattctcaatcactacacaattatgcctaaattttcccccgaagaatcgtatttcactcgtcatttgttcttcttctacttcgccccctccgccatcatcgtcgtcgccccaagtcagtgaacccactcccactgctgagtcctgtgtcaatgccggcctcgacctcttctctaaaggacgggtgaaagatgctcttgtgctattcgacacagcacttactttaaatcccaaccctgaggaggctcaagctgcattttataacaaagcatgttgccatgcctacaggggggaaggaaagaaagctgctgagtgtttacgcactgctttgaaagagtataaccttaagtttggcacaatcttaaatgatccagatttggcttccttcagagcattgcctgaatttaaggaactacaggaagaggctaggttaggaggggaagacataggttacagtttccgtagagaccttaagctcatcagtgagtacaagcaccgtttaggggggtcagaagattcttttatgtggcattcattgctgctgctggaatttctacatttttcactatacccaggttaatccgtgcaattcaagggtggagatggtgctcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59817" stop="63195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60117" g_stop="60370" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61938" g_stop="62041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="358" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62399" g_stop="62534" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="494" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62535" i_stop="62703" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62704" g_stop="62895" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="686" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E318163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60117" e_stop="60370"/>
          <exon e_start="61938" e_stop="62041"/>
          <exon e_start="62399" e_stop="62534"/>
          <exon e_start="62704" e_stop="62895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCATAGGGGGCTTTGAGAGTTTGGTTAGGGCAAGTGTTCTCCAAGAATCTGCAACTTGAGCAAGTTTACTAGTTTGACATGTCTATTCAAAATTTTCCTGTTTTGAGTAAATCTTATGGTAACAGTTGTACTCAGAGGTGTATCTAGGATTTTTAGTTTATGAGTTTTGAATATATCATTTTACACATAGCAAATGAACTTTTTGAAACATAACTACGAGGTTTGAGCCAAAGCTACAGGGTTTTGTTGAACCAAATGGCTGAAGGGGTGGCTCTGCTCCTACACTTAACACCCACCCTAATCATGCTTTATTGAAAATTGGTCGTGAGTGGACTTTTGACAGTGACTTGAAAAATAGGAAGGTACTTTCAGATTTTATCTGTAACAACAACTAGATTTCAAAATGCGTATGACTGGAACTTTATAATAATGCTAAGATTGTAAATTTGACATCAAACAAGAACATGTGTCACATGAATTGAGATAGATGGACTAGGAAGGAGTATAATTGGAAAGTAAATTTCTGTCTAAAACTGAAAGTGTACCAAAAGATTGATGATTCAAAGATTTTCCTACTCAACAAGTTTTTCTGTTAAATCTTGTGCACATCAGAAGCTTGAATGTCTGAGTTATAGTTTCTTGTGTATCTCTATTTGATCCTGCATAGCAAGCTTAAGGATAGTATCTAGTAGGTTGAATCACAATTATTACTGGAAAAGCTATCAATTTGTTAATGTCATTGATCAAATCTTCTTTTTGCTTTTAATCAACAATTTGTCTTTTGTGAAATTACCTATTTAAAATCTATTCAGTTGGCTTTTTTTTTTTTGGTTATTTCTCACTTAATTATGTTTCCAATAATCTGCATTTTGGTTTGTGTACAAACCTCTTGCAGTTGGTTACAATTTCAATCTGCAATATGGGCGACATGCACCTTATTGTTCACTAAATTTGATCTTTCCAGGTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAGGTATATCTCTCCTTTGCCTCTTTCATGGTTGAATTGATTAAGCTGGATCTTATAAACGGTTATTTGTTTGAAATCATGTGAGACATTGAGAAAAAAAACATATTTTCGACTTTCTTCTCGTGTAAAATGCAAGTAAAGGAATTTAAAATTTCTTAATCACAGTTTTAGCTTTGTGAACTGTAAGTTGAGGCACCTGTAGTTTCTTAATCACAGTTCTTAGCTTAATTGTTTCATTGGAAGGATCACTAAAACCAATGTTGAATCTTCAATGAGCGTCTACTATACTTATTTATTCTTCTTCACTCTTTTATTATTTCTCTATTTGTTTAATAATTTATTTTTCTTTATTAACTCAAGGGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAGGTTTGTTTCCAGCTGTTGATATAGTTCTTTAGTTTTCGTCATGCTTGGATGTCTGAATTTAATTCAGCTCCTTACCACATTGACTATGTTACAGTATCTCCAGAACTTCGTAATGCTCTAGCTTTGCTTCATTGTTTCTGAATCTCATAGTCTTCTATTTACCTCACAGGCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAA-GGTGGAGATGGTGCTCCTGAT</genome_strand>
        <mrna_strand>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG.....................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAG.........................................................................................................................................................................GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGA-GTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGGTGGAGATGGTGCTCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358225" ref_strand="+" ref_description="SGN-E358225 [cLHT-23-H2]">
      <seq>ttgacatggccattgcaactcttccctcctctcatcacctccatatctgcttcttctcttcatcatcttccaaattctcaattactacacaattatgcctaaattttcccccgaagaatcgtatttcactcgtcgtttgttcttcttctacttcgccccctccgccatcatcgccgtcgccccaagtcagtgaacccactcccactgctgagtcctgtgtcaatgccggcctcgacctcttctctaaaggacgggtgaaagatgctcttgtgctattcgacacagcacttactttaaatcccaaccctgaggaggctcaagctgcattttataacaaagcatgttgccatgcctacaggggggaaggaaagaaagctgctgagtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59817" stop="62728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60117" g_stop="60370" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61938" g_stop="62041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="358" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62399" g_stop="62428" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="388" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E358225" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60117" e_stop="60370"/>
          <exon e_start="61938" e_stop="62041"/>
          <exon e_start="62399" e_stop="62428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCATAGGGGGCTTTGAGAGTTTGGTTAGGGCAAGTGTTCTCCAAGAATCTGCAACTTGAGCAAGTTTACTAGTTTGACATGTCTATTCAAAATTTTCCTGTTTTGAGTAAATCTTATGGTAACAGTTGTACTCAGAGGTGTATCTAGGATTTTTAGTTTATGAGTTTTGAATATATCATTTTACACATAGCAAATGAACTTTTTGAAACATAACTACGAGGTTTGAGCCAAAGCTACAGGGTTTTGTTGAACCAAATGGCTGAAGGGGTGGCTCTGCTCCTACACTTAACACCCACCCTAATCATGCTTTATTGAAAATTGGTCGTGAGTGGACTTTTGACAGTGACTTGAAAAATAGGAAGGTACTTTCAGATTTTATCTGTAACAACAACTAGATTTCAAAATGCGTATGACTGGAACTTTATAATAATGCTAAGATTGTAAATTTGACATCAAACAAGAACATGTGTCACATGAATTGAGATAGATGGACTAGGAAGGAGTATAATTGGAAAGTAAATTTCTGTCTAAAACTGAAAGTGTACCAAAAGATTGATGATTCAAAGATTTTCCTACTCAACAAGTTTTTCTGTTAAATCTTGTGCACATCAGAAGCTTGAATGTCTGAGTTATAGTTTCTTGTGTATCTCTATTTGATCCTGCATAGCAAGCTTAAGGATAGTATCTAGTAGGTTGAATCACAATTATTACTGGAAAAGCTATCAATTTGTTAATGTCATTGATCAAATCTTCTTTTTGCTTTTAATCAACAATTTGTCTTTTGTGAAATTACCTATTTAAAATCTATTCAGTTGGCTTTTTTTTTTTTGGTTATTTCTCACTTAATTATGTTTCCAATAATCTGCATTTTGGTTTGTGTACAAACCTCTTGCAGTTGGTTACAATTTCAATCTGCAATATGGGCGACATGCACCTTATTGTTCACTAAATTTGATCTTTCCAGGTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAGGTATATCTCTCCTTTGCCTCTTTCATGGTTGAATTGATTAAGCTGGATCTTATAAACGGTTATTTGTTTGAAATCATGTGAGACATTGAGAAAAAAAACATATTTTCGACTTTCTTCTCGTGTAAAATGCAAGTAAAGGAATTTAAAATTTCTTAATCACAGTTTTAGCTTTGTGAACTGTAAGTTGAGGCACCTGTAGTTTCTTAATCACAGTTCTTAGCTTAATTGTTTCATTGGAAGGATCACTAAAACCAATGTTGAATCTTCAATGAGCGTCTACTATACTTATTTATTCTTCTTCACTCTTTTATTATTTCTCTATTTGTTTAATAATTTATTTTTCTTTATTAACTCAAGGGGGGAAGGAAAGAAAGCTGCTGAGTGTTT</genome_strand>
        <mrna_strand>TTGACATGGCCATTGCAACTCTTCCCTCCTCTCATCACCTCCATATCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATTACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCGTTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGCCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG.....................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGGAAAGAAAGCTGCTGAGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730466" ref_strand="+" ref_description="SGN-E730466 [LA24AH06]">
      <seq>ctttgcgtgcttctcttcatcatcttccaagattctcaatcactacacaattatgcctaaattttcccccgaagaatcgtatttcactcgtcatttgttcttcttctacttcgccccctccgccatcatcgtcgtcgccccaagtcagtgaacccactcccactgctgagtcctgtgtcaatgccggcctcgacctcttctctaaaggacgggtgaaagatgctcttgtgctattcgacacagcacttactttaaatcccaaccctgaggaggctcaagctgcattttataacaaagcatgttgccatgcctacaggggggaaggaaagaaagctgctgagtgtttacgcactgctttgaaagagtataaccttaagtttggcacaatcttaaatgatccagatttggcttccttcagagcattgcctgaatttaaggaactacaggaagaggctaggttaggaggggaagacataggttacagtttccgtagagaccttaagctcatcagtgaggtacaagcaccgtttaggggggtcagaagattcttttatgtggcattcattgctgctgctggaatttctacatttttcactatacccaggttaatccgtgcaattcaaggtggagatggtgctcctgatttaggggcgactgcaggaaatgctgctataaatgtcgctggtattgctgtttttgtggctttgttgttttgggacaacaaaaaagaggaggaacagcttgcacaaatattgcgtgatgaaacactatcaaggctgcctttgcgcctttcaactgataggattgtttgacttgtccagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59861" stop="63521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60159" g_stop="60370" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61938" g_stop="62041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="316" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62399" g_stop="62534" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="452" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62535" i_stop="62703" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62704" g_stop="62935" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="684" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62936" i_stop="63081" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.176" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63082" g_stop="63221" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="824" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E730466" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60159" e_stop="60370"/>
          <exon e_start="61938" e_stop="62041"/>
          <exon e_start="62399" e_stop="62534"/>
          <exon e_start="62704" e_stop="62935"/>
          <exon e_start="63082" e_stop="63221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGCTTCTTCTCTTCATCATCTTCCAA-ATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCATAGGGGGCTTTGAGAGTTTGGTTAGGGCAAGTGTTCTCCAAGAATCTGCAACTTGAGCAAGTTTACTAGTTTGACATGTCTATTCAAAATTTTCCTGTTTTGAGTAAATCTTATGGTAACAGTTGTACTCAGAGGTGTATCTAGGATTTTTAGTTTATGAGTTTTGAATATATCATTTTACACATAGCAAATGAACTTTTTGAAACATAACTACGAGGTTTGAGCCAAAGCTACAGGGTTTTGTTGAACCAAATGGCTGAAGGGGTGGCTCTGCTCCTACACTTAACACCCACCCTAATCATGCTTTATTGAAAATTGGTCGTGAGTGGACTTTTGACAGTGACTTGAAAAATAGGAAGGTACTTTCAGATTTTATCTGTAACAACAACTAGATTTCAAAATGCGTATGACTGGAACTTTATAATAATGCTAAGATTGTAAATTTGACATCAAACAAGAACATGTGTCACATGAATTGAGATAGATGGACTAGGAAGGAGTATAATTGGAAAGTAAATTTCTGTCTAAAACTGAAAGTGTACCAAAAGATTGATGATTCAAAGATTTTCCTACTCAACAAGTTTTTCTGTTAAATCTTGTGCACATCAGAAGCTTGAATGTCTGAGTTATAGTTTCTTGTGTATCTCTATTTGATCCTGCATAGCAAGCTTAAGGATAGTATCTAGTAGGTTGAATCACAATTATTACTGGAAAAGCTATCAATTTGTTAATGTCATTGATCAAATCTTCTTTTTGCTTTTAATCAACAATTTGTCTTTTGTGAAATTACCTATTTAAAATCTATTCAGTTGGCTTTTTTTTTTTTGGTTATTTCTCACTTAATTATGTTTCCAATAATCTGCATTTTGGTTTGTGTACAAACCTCTTGCAGTTGGTTACAATTTCAATCTGCAATATGGGCGACATGCACCTTATTGTTCACTAAATTTGATCTTTCCAGGTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAGGTATATCTCTCCTTTGCCTCTTTCATGGTTGAATTGATTAAGCTGGATCTTATAAACGGTTATTTGTTTGAAATCATGTGAGACATTGAGAAAAAAAACATATTTTCGACTTTCTTCTCGTGTAAAATGCAAGTAAAGGAATTTAAAATTTCTTAATCACAGTTTTAGCTTTGTGAACTGTAAGTTGAGGCACCTGTAGTTTCTTAATCACAGTTCTTAGCTTAATTGTTTCATTGGAAGGATCACTAAAACCAATGTTGAATCTTCAATGAGCGTCTACTATACTTATTTATTCTTCTTCACTCTTTTATTATTTCTCTATTTGTTTAATAATTTATTTTTCTTTATTAACTCAAGGGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAGGTTTGTTTCCAGCTGTTGATATAGTTCTTTAGTTTTCGTCATGCTTGGATGTCTGAATTTAATTCAGCTCCTTACCACATTGACTATGTTACAGTATCTCCAGAACTTCGTAATGCTCTAGCTTTGCTTCATTGTTTCTGAATCTCATAGTCTTCTATTTACCTCACAGGCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTGGTAAATAAGGACTACCTTTGCTACGAATCATTTAGTTCACTTCTAAAGTTCTAGAAATTATTTTTGCTGGCTATATTAACTTGCGCTTTTAAATGAAAAGAACTGTTTCTCAAAAATGATTAACCTCTTGAACCAGCACTCTGCAGGTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTA</genome_strand>
        <mrna_strand>CTTTGCG-TGCTTCTCTTCATCATCTTCCAAGATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG.....................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAG.........................................................................................................................................................................GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTG..................................................................................................................................................GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTTGACTTGTCCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472188" ref_strand="+" ref_description="SGN-E472188 [cSTB-27-J8]">
      <seq>cctcgtgccgcacaattatgcctaaattttcccccaaagaatcgtgtttcacttgtcatttgttcttcttctacttcgcctcctccgccatcatcgtcgtccccccaagtcagtgaacccactcccactgctaagtcctgcgtcaatgccggcctcgacctcttctctaaaggacgggtgaaagatgctcttgtgctgttcgacacagcacttactttaaatcccaaccctgtggaggctcaagctgcattttataacaaagcatgctgccatgcctacaggggggaaggaaagaaagctgctgagtgtttacgcactgctttgaaagagtataacctcaagtttggcacaatccttaatgatccggatttggcttccttcaaagcattgcctgaatttaaggaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59904" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60205" g_stop="60370" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="177" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61938" g_stop="62041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="281" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62399" g_stop="62525" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="408" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E472188" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60205" e_stop="60370"/>
          <exon e_start="61938" e_stop="62041"/>
          <exon e_start="62399" e_stop="62525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCATAGGGGGCTTTGAGAGTTTGGTTAGGGCAAGTGTTCTCCAAGAATCTGCAACTTGAGCAAGTTTACTAGTTTGACATGTCTATTCAAAATTTTCCTGTTTTGAGTAAATCTTATGGTAACAGTTGTACTCAGAGGTGTATCTAGGATTTTTAGTTTATGAGTTTTGAATATATCATTTTACACATAGCAAATGAACTTTTTGAAACATAACTACGAGGTTTGAGCCAAAGCTACAGGGTTTTGTTGAACCAAATGGCTGAAGGGGTGGCTCTGCTCCTACACTTAACACCCACCCTAATCATGCTTTATTGAAAATTGGTCGTGAGTGGACTTTTGACAGTGACTTGAAAAATAGGAAGGTACTTTCAGATTTTATCTGTAACAACAACTAGATTTCAAAATGCGTATGACTGGAACTTTATAATAATGCTAAGATTGTAAATTTGACATCAAACAAGAACATGTGTCACATGAATTGAGATAGATGGACTAGGAAGGAGTATAATTGGAAAGTAAATTTCTGTCTAAAACTGAAAGTGTACCAAAAGATTGATGATTCAAAGATTTTCCTACTCAACAAGTTTTTCTGTTAAATCTTGTGCACATCAGAAGCTTGAATGTCTGAGTTATAGTTTCTTGTGTATCTCTATTTGATCCTGCATAGCAAGCTTAAGGATAGTATCTAGTAGGTTGAATCACAATTATTACTGGAAAAGCTATCAATTTGTTAATGTCATTGATCAAATCTTCTTTTTGCTTTTAATCAACAATTTGTCTTTTGTGAAATTACCTATTTAAAATCTATTCAGTTGGCTTTTTTTTTTTTGGTTATTTCTCACTTAATTATGTTTCCAATAATCTGCATTTTGGTTTGTGTACAAACCTCTTGCAGTTGGTTACAATTTCAATCTGCAATATGGGCGACATGCACCTTATTGTTCACTAAATTTGATCTTTCCAGGTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAGGTATATCTCTCCTTTGCCTCTTTCATGGTTGAATTGATTAAGCTGGATCTTATAAACGGTTATTTGTTTGAAATCATGTGAGACATTGAGAAAAAAAACATATTTTCGACTTTCTTCTCGTGTAAAATGCAAGTAAAGGAATTTAAAATTTCTTAATCACAGTTTTAGCTTTGTGAACTGTAAGTTGAGGCACCTGTAGTTTCTTAATCACAGTTCTTAGCTTAATTGTTTCATTGGAAGGATCACTAAAACCAATGTTGAATCTTCAATGAGCGTCTACTATACTTATTTATTCTTCTTCACTCTTTTATTATTTCTCTATTTGTTTAATAATTTATTTTTCTTTATTAACTCAAGGGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTA</genome_strand>
        <mrna_strand>ACAATTATGCCTAAATTTTCCCCCAAAGAATCGTGTTTCACTTGTCATTTGTTCTTCTTCTACTTCGCCTCCTCCGCCATCATCGTCGTCCCCCCAAGTCAGTGAACCCACTCCCACTGCTAAGTCCTGCGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGATGCTCTTGTGCTGTTCGACACAGCACTTACTTTAAATCCCAACCCTGTGGAGGCTCAAGCTGCATTTTATAACAAAGCATGCTGCCATGCCTACAG.....................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTCAAGTTTGGCACAATCCTTAATGATCCGGATTTGGCTTCCTTCAAAGCATTGCCTGAATTTAAGGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288832" ref_strand="+" ref_description="SGN-E288832 [cLES-17-J13]">
      <seq>gaagacataggttacagtttccgtagagaccttaagctcatcagtgaggtacaagcaccgtttaggggggtcagaagattcttttatgtggcattcattgctgctgctggaatttctacatttttcactatacccaggttaatccgtgcaattcaaggtggagatggtgctcctgatttaggggcgactgcaggaaatgctgctataaatgtcgctggtattgctgtttttgtggctttgttgttttgggacaacaaaaaagaggaggaacagcttgcacaaatattgcgtgatgaaacactatcaaggctgcctttgcgcctttcaactgataggattgttgaactcgtccagctaagagacaccgtgaggcctgttattttggctggaaaaaaggagacagtctctctggctatgagaaatgctgagaaattccgcactgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="62419" stop="64018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62719" g_stop="62935" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62936" i_stop="63081" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.176" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63082" g_stop="63239" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="375" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63240" i_stop="63647" i_length="408">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63648" g_stop="63718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="446" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E288832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62719" e_stop="62935"/>
          <exon e_start="63082" e_stop="63239"/>
          <exon e_start="63648" e_stop="63718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTGGTAAATAAGGACTACCTTTGCTACGAATCATTTAGTTCACTTCTAAAGTTCTAGAAATTATTTTTGCTGGCTATATTAACTTGCGCTTTTAAATGAAAAGAACTGTTTCTCAAAAATGATTAACCTCTTGAACCAGCACTCTGCAGGTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCTGTTAGTGAGACAATTTCCCCTTTACTCTTCCTGTCAATTTCTAGAAGTTGAGTGGAAAACGTCCGGAGTCCTTCAATTTTACCTTGAAGAATGAGATGTCCTGTATGAGATGTCCTGTCACTAGTCTAGTTCTCGTTGCCATGTATCCTGCTTAACAGATCAAAAGATATTGTTTACCTCCTTCGTTTGAAGAATCCATTTCCATCACATTTACATTGTCGGAGGATAATTAAAGAGAAAAAGTCAGTAACATATTTTGCTAGGTTTGCAACAAATGTCTTTGTTTCATGAGCAAAAAGCTATCCCATTACGTATTTGTTCTCTCTGTCTCTCTTTTTCCTTATTAAAAATTCCGGACTTGAACATATTCTCTCCTTGTATTTGAAGTTTGACCAATTTGCTTGTTAGGTTATTTTGGCTGGAAAAAAGGAGACAGTCTCTCTGGCTATGAGAAATGCTGAGAAATTCCGCACTGAGCT</genome_strand>
        <mrna_strand>GAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTG..................................................................................................................................................GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGGCTGGAAAAAAGGAGACAGTCTCTCTGGCTATGAGAAATGCTGAGAAATTCCGCACTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539991" ref_strand="+" ref_description="SGN-E539991 [TUS-60-A14]">
      <seq>caaaaggcagtcgcttccctcccatccataggggaagattttgaccaaagaactcagtcaataattgcaaaatcaaaactgaagtcagagatccggttcaaggcggaggtcgtttcacctgcagagtgggaaaggtggataagggatcaacagaagtctgaaggtgttactcctggtgaagatgtctacattatacttcgtctagatggtcgtgttcgacgatcaggaaaggggatgcctgactgggctcaaattttaaaggaactgcctccaatggaagcaatattaagcaagctagaaagataatacaagttcctcttgctgagtgctaaaatcttttcactacctggtgtattttcggtcagtctccttacttgaaatataaaaggcactaattgatgcctgttgagcttgtctgttttacgtttccattttttcacgaacatatactgtactataattctataaattgatattgatatttgccagatgaatatccaaaggatatgaaatcccataggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="63504" stop="65195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63804" g_stop="63836" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63837" i_stop="64047" i_length="211">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64048" g_stop="64148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="134" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64149" i_stop="64314" i_length="166">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64315" g_stop="64411" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="231" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64412" i_stop="64596" i_length="185">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64597" g_stop="64896" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="531" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E539991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63804" e_stop="63836"/>
          <exon e_start="64048" e_stop="64148"/>
          <exon e_start="64315" e_stop="64411"/>
          <exon e_start="64597" e_stop="64896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGGGTAAGATTGAAGATTTTTAGTAGCACTTAATGATCATTTTAAACAACATGATGCTATTGCATGCACATCAAGTCTCAAAGTGCAAAATATATATTTTTTTTACATGCTACAGGATTTTTGAAAGTCGTTTCTTGTTGCTCAACAAGCATAAGACGATAATCTTAATGGTGCATTTATCTCATTCAGGTTCTTATTTTTGTCCAATCTGTAGGAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAGGTATATCTACCTGTTCCAAATACTCTTGAAACTACTCATCCCGTCATGGTCATGTGCATTTATGTTTGTGCCACTTTAATTTATTGTACATCCCGTTACACAGTTTGATCGACTGAATTGTTTTCCCTTGTACCAGATCTATTGTCTGACATCAAATCTATTTCAGGTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAGGTCAGTACTTGTTGCTGCAATTCTCTTCTTTGGTCCATTAATCCTGACTCAGTTATATACTTATATGCATAGATAATCAGCACATAAATTGATCATGACATAACATAGATGACTGAATCCATAAAAGTATAATTTACTACTCATACGGGTTAATTCTTCGATTTTAATATCGACCAACTCTGCAGGGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAATAGAAAT</genome_strand>
        <mrna_strand>CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGG...................................................................................................................................................................................................................GAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAG......................................................................................................................................................................GTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAG.........................................................................................................................................................................................GGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548311" ref_strand="+" ref_description="SGN-E548311 [TUS-60-A14](-)">
      <seq>caaaaggcagtcgcttccctcccatccataggggaagattttgaccaaagaactcagtcaataattgcaaaatcaaaactgaagtcagagatccggttcaaggcggaggtcgtttcacctgcagagtgggaaaggtggataagggatcaacagaagtctgaaggtgttactcctggtgaagatgtctacattatacttcgtctagatggtcgtgttcgacgatcaggaaaggggatgcctgactgggctcaaattttaaaggaactgcctccaatggaagcaatattaagcaagctagaaagataatacaagttcctcttgctgagtgctaaaatcttttcactacctggtgtattttcggtcagtctccttacttgaaatataaaaggcactaattgatgcctgttgagcttgtctgttttacgtttccattttttcacgaacatatactgtactataattctataaattgatattgatatttgccagatgaatatccaaaggatatgaaatcccataggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="63504" stop="65195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63804" g_stop="63836" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63837" i_stop="64047" i_length="211">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64048" g_stop="64148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="134" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64149" i_stop="64314" i_length="166">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64315" g_stop="64411" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="231" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64412" i_stop="64596" i_length="185">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64597" g_stop="64896" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="531" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E548311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63804" e_stop="63836"/>
          <exon e_start="64048" e_stop="64148"/>
          <exon e_start="64315" e_stop="64411"/>
          <exon e_start="64597" e_stop="64896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGGGTAAGATTGAAGATTTTTAGTAGCACTTAATGATCATTTTAAACAACATGATGCTATTGCATGCACATCAAGTCTCAAAGTGCAAAATATATATTTTTTTTACATGCTACAGGATTTTTGAAAGTCGTTTCTTGTTGCTCAACAAGCATAAGACGATAATCTTAATGGTGCATTTATCTCATTCAGGTTCTTATTTTTGTCCAATCTGTAGGAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAGGTATATCTACCTGTTCCAAATACTCTTGAAACTACTCATCCCGTCATGGTCATGTGCATTTATGTTTGTGCCACTTTAATTTATTGTACATCCCGTTACACAGTTTGATCGACTGAATTGTTTTCCCTTGTACCAGATCTATTGTCTGACATCAAATCTATTTCAGGTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAGGTCAGTACTTGTTGCTGCAATTCTCTTCTTTGGTCCATTAATCCTGACTCAGTTATATACTTATATGCATAGATAATCAGCACATAAATTGATCATGACATAACATAGATGACTGAATCCATAAAAGTATAATTTACTACTCATACGGGTTAATTCTTCGATTTTAATATCGACCAACTCTGCAGGGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAATAGAAAT</genome_strand>
        <mrna_strand>CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGG...................................................................................................................................................................................................................GAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAG......................................................................................................................................................................GTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAG.........................................................................................................................................................................................GGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288647" ref_strand="+" ref_description="SGN-E288647 [cLES-8-J19]">
      <seq>aaaaggcagtcgcttccctcccatccataggggaagattttgaccaaagaactcagtcaataattgcaaaatcaaaactgaagtcagagatccggttcaaggcggaggtcgtttcacctgcagagtgggaaaggtggataagggatcaacagaagtctgaaggtgttactcctggtgaagatgtctacattatacttcgtctagatggtcgtgttcgacgatcaggaaaggggatgcctgactgggctcaaattttaaaggaactgcctccaatggaagcaatattaagcaagctagaaagataatacaagttcctcttgctgagtgctaaaatcttttcactacctggtgtattttcggtcagtctccttacttgaaatataaaaggcactaattgatgcctgttgagcttgtctgttttacgtttccattttttcacgaacatatactgtactataattctattaaattgatattgatatttgccagatgaatatccaaaggatatgaaatcccataggaaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="63505" stop="65195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63805" g_stop="63836" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63837" i_stop="64047" i_length="211">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64048" g_stop="64148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="133" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64149" i_stop="64314" i_length="166">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64315" g_stop="64411" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="230" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64412" i_stop="64596" i_length="185">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64597" g_stop="64896" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="531" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E288647" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63805" e_stop="63836"/>
          <exon e_start="64048" e_stop="64148"/>
          <exon e_start="64315" e_stop="64411"/>
          <exon e_start="64597" e_stop="64896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCAGTCGCTTCCCTCCCATCCATAGGGGTAAGATTGAAGATTTTTAGTAGCACTTAATGATCATTTTAAACAACATGATGCTATTGCATGCACATCAAGTCTCAAAGTGCAAAATATATATTTTTTTTACATGCTACAGGATTTTTGAAAGTCGTTTCTTGTTGCTCAACAAGCATAAGACGATAATCTTAATGGTGCATTTATCTCATTCAGGTTCTTATTTTTGTCCAATCTGTAGGAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAGGTATATCTACCTGTTCCAAATACTCTTGAAACTACTCATCCCGTCATGGTCATGTGCATTTATGTTTGTGCCACTTTAATTTATTGTACATCCCGTTACACAGTTTGATCGACTGAATTGTTTTCCCTTGTACCAGATCTATTGTCTGACATCAAATCTATTTCAGGTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAGGTCAGTACTTGTTGCTGCAATTCTCTTCTTTGGTCCATTAATCCTGACTCAGTTATATACTTATATGCATAGATAATCAGCACATAAATTGATCATGACATAACATAGATGACTGAATCCATAAAAGTATAATTTACTACTCATACGGGTTAATTCTTCGATTTTAATATCGACCAACTCTGCAGGGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTA-TAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAATAGAAAT</genome_strand>
        <mrna_strand>AAAAGGCAGTCGCTTCCCTCCCATCCATAGGG...................................................................................................................................................................................................................GAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAG......................................................................................................................................................................GTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAG.........................................................................................................................................................................................GGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATTAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAAAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302652" ref_strand="+" ref_description="SGN-E302652 [cLEX-1-A22]">
      <seq>gaaaaatttatcaacaatggctgcgaattccttttgttccattttcatcatctcttcattattgatcgcagctttgatcatctccggcgatgctaccggcggcgatttcgacgtgagcggttggattccgatgaaatccgccgatagctgtgaaggttcgatagcggagtgtatggctgccggagaattcgaaatggattcggagagcaacaggcgtatattagcaactactgattatataagctatggtgcgctgcagagtaacagtgttccgtgttctagaagaggtgcgtcgtattataactgcaaaacaggtgctgaagctaatccgtatacacgtggttgcagtgctattactcgttgccggagttaaattaattaaagatcgaattaatcgatgttaattaattattagtaagtgtaattgttttgaataatttcgtagtgtttatattgtatactttaagtaggagtatttttcttttcagttgcaatttcaaataaagtgacagtggtgctttggcagtggtttatggttaatacaatgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="68677" stop="69829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68977" g_stop="69529" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E302652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68977" e_stop="69529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATTTATCAACAATGGCTGCGAATTCCTTTTGTTCCATTTTCATCATCTCTTCATTATTGATCGCAGCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACAATGTTCATT</genome_strand>
        <mrna_strand>GAAAAATTTATCAACAATGGCTGCGAATTCCTTTTGTTCCATTTTCATCATCTCTTCATTATTGATCGCAGCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACAATGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304451" ref_strand="+" ref_description="SGN-E304451 [cLEX-12-F9]">
      <seq>tcttcattattgatcgcagctttgatcatctccggcgatgctaccggcggcgatttcgacgtgagcggttggattccgatgaaatccgccgatagctgtgaaggttcgatagcggagtgtatggctgccggagaattcgaaatggattcggagagcaacaggcgtatattagcaactactgattatataagctatggtgcgctgcagagtaacagtgttccgtgttctagaagaggtgcgtcgtattataactgcaaaacaggtgctgaagctaatccgtatacacgtggttgcagtgctattactcgttgccggagttaaattaattaaagatcgaattaatcgatgttaattaattattagtaagtgtaattgttttgaataatttcgtagtggttatattgtatactttaagtaggagtatttttcttttcagttgcaatttcaaataaagtgacagtggtgctttggcagtgggttatggttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="68729" stop="69821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69029" g_stop="69520" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E304451" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69029" e_stop="69520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTATTGATCGCAGCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACA</genome_strand>
        <mrna_strand>TCTTCATTATTGATCGCAGCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGGTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGGTTATGGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549138" ref_strand="+" ref_description="SGN-E549138 [TUS-67-K12](-)">
      <seq>acctcgtgccgctccggcgatgctaccggcggcgatttcgacgtgagcggttggattccgatgaaatccgccgatagctgtgaaggttcgatagcggagtgtatggctgccggagaattcgaaatggattcggagagcaacaggcgtatattagcaactactgattatataagctatggtgcgctgcagagtaacagtgttccgtgttctagaagaggtgcgtcgtattataactgcaaaacaggtgctgaagctaatccgtatacacgtggttgcagtgctattactcgttgccggagttaaattaattaaagatcgaattaatcgatgttaattaattattagtaagtgtaattgttttgaataatttcgtagtgtttatattgtatactttaagtaggagtatttttcttttcagttgcatttcaaaataaagtgacagtggtgcttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="68748" stop="69801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69502" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E549138" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAG</genome_strand>
        <mrna_strand>ACCTCGTGCCGCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCATTTCAAAATAAAGTGACAGTGGTGC-TTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545021" ref_strand="+" ref_description="SGN-E545021 [TUS-67-K12]">
      <seq>cctcgtgccgctccggcgatgctaccggcggcgatttcgacgtgagcggttggattccgatgaaatccgccgatagctgtgaaggttcgatagcggagtgtatggctgccggagaattcgaaatggattcggagagcaacaggcgtatattagcaactactgattatataagctatggtgcgctgcagagtaacagtgttccgtgttctagaagaggtgcgtcgtattataactgcaaaacaggtgctgaagctaatccgtatacacgtggttgcagtgctattactcgttgccggagttaaattaattaaagatcgaattaatcgatgttaattaattattagtaagtgtaattgttttgaataatttcgtagtgtttatattgtatactttaagtaggagtatttttcttttcagttgcaatttcaaataaagtgacagtggtgctttggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="68748" stop="69800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="69502" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E545021" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="69502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAG</genome_strand>
        <mrna_strand>CCTCGTGCCGCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308491" ref_strand="+" ref_description="SGN-E308491 [cLEY-21-M20]">
      <seq>tgttccgtgttctagaagaggtgcgtcgtattataactgcaaaacaggtgctgaagctaatccgtatacacgtggttgcagtgctattactcgttgccggagttaaattaattaaagatcgaattaatcgatgttaattaattattagtaagtgtaattgttttgaataatttcgtagtgtttatattgtatactttaagtaggagtatttttcttttcagttgcaatttcaaataaagtgacagtggtgctttggcagtggtttatggttaatacaatgttcatttggtgtttgttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="68944" stop="69846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69244" g_stop="69553" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E308491" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69244" e_stop="69553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACAATGTTCATTTGGTGTTTGTTAATACATGTATTA</genome_strand>
        <mrna_strand>TGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACAATGTTCATTTGGTGTTTGTTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309356" ref_strand="+" ref_description="SGN-E309356 [cLEY-22-A24]">
      <seq>aggactgtttgctgttgtgcgttctaaaatcattcaactgaagctcagagtttctcagagaaatccttcctcaaccaagaaagtccttcaagctgaccatattgtgacgactatgtttgttgggaatttcattggcattatatgtgcccgatccctccattaccaattttattcttggtacttctattgcttaccatatttattgtggaaagcaccatttccaaccctcctacgtttattcttgttcgcagctgtagagttttgctggaacgtcttcccctccaacacttgctcatcacttgtcctcctctgtgtccatttgatcatattggccggtctatggataagttcaccagaatatccgtacgtcgaagaaaaaacaacttataaatctacacctaagaagaaggccagataaagcacttnctggttatgcatgtgaatggcagataaagaaaaaacaactgataaaacaaagtttttgtttttctgtttcttttcgtagtgttaatgcttacagttttgttagatggtatacaaaaccagaaaggtggtaacaaccacacgaagatcatccaatggcatcaaggatgaatattttctggggggttttcaacatttgaggatttcattagctcaaatctgaattagacttgaatattttagaaggtcaacctattttatttatctaaatctgtatggtgtactatttattgtcaagatttaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="72222" stop="69862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71922" g_stop="71825" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71824" i_stop="71689" i_length="136">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71688" g_stop="71610" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="177" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71609" i_stop="70797" i_length="813">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70796" g_stop="70740" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="234" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70656" g_stop="70162" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="730" r_length="496" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E309356" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71922" e_stop="71825"/>
          <exon e_start="71688" e_stop="71610"/>
          <exon e_start="70796" e_stop="70740"/>
          <exon e_start="70656" e_stop="70162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACCGTAAGCAACATGCACAATTTATTTTGTGATTTTTCTATACTCAAAAAGGCTGTCAAGTGTTATACTGTCACTAGTTTTGTCTTGATTTGACATGATCTTTGGTTGCTGAATTGGTCTGTGTCTATTTCATTCTCAGATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTGGTAAGTTTTTGCAGCTTATTTCTTTCTTTAGGTCATGGATTCGATCTCATACTCCTCACCTCTTAACACAAATGTCTTGATGTGTTATTAAGGGTTAGCTGAACTAATTTTCAGAGTGAATTAGAAGAAGATTTTAATTGTCCACATTAATTTAAATATGCAACTTTCCATATATTTAAACATTTGAAAAGCTTTAGTAAATGATAATTTTGCTTTGATTCTTGGAATAGTTAACAATAATATTCAGCTTGAGATAGATGCATGCTTTTATGATCTTATGTTTGTATTGAGCTCAGTTCTGGTGGTAACTGCTCATAAAAGCACAACATATATTTCAAGAGGACATAATTGAAATGTTTAATCAGAAATCAGAATGATAAACTGTTTTATTCTAACTTAGTAATTGTGCCACACTAAAATAAATAATGCGTTTCAGACAGACATAGTAATAAATAGAGATGCTTCAGCATCTCATTGAAGAACAGAGAATTTTGGGGTGCATTTTGTTAGTAGTTCACGGGACTGCAGCATGTACTTAAGGGAGAAGTGTATTTAAATATAAAATGCTCATTGAGTAGTTGACCACCTCTCTGTGTGTAACTTTTTCCCCGGTGAGTCGGTGAAGATCACAAAAAATCAGCTCCTCTCCCCTGCTAGCATGGCACCAAACAAGACATAAAGGCCTTGACTAACATTTGCCAAGCAAATGGAAATTTGGAAGATTACTCGCTCTTTCACTGCGTTCCTGGGTTCTGTGTCAAAGTTTTAATTGAATTAAGATAAAACCATTGATGTCCTAGAGCTTGTTTGCAGGTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACGGTATACAACTTAATACTCAAACTTCTCTGTTTGCTTTAGTTTTTTGGTATTTTCTGTTGACAAGTTTTCGTGTTGTACTGCAGTTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTATCTGGTTATGCATGTGAATGGCAGATAAAGAAAAAACAACTGATAAAACAAAGTTTTTGTTTTTCTGTTTCTTTTCGTAGTGTTAATGCTTACAGTTTTGTTAGATGGTATACAAAACCAGAAAGGTGGTAACAACCACACGAAGATCATCCAATGGCATCAAGGATGAATATTTTCT-GGGGGTTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATATTTTAGAAGGTCAACCTATTTTATTTATCTAAATCTGTATGGTGTACTATTTATTGTCAAGATTTAAGGA</genome_strand>
        <mrna_strand>AGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACC........................................................................................................................................ATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACG...................................................................................TTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTTNCTGGTTATGCATGTGAATGGCAGATAAAGAAAAAACAACTGATAAAACAAAGTTTTTGTTTTTCTGTTTCTTTTCGTAGTGTTAATGCTTACAGTTTTGTTAGATGGTATACAAAACCAGAAAGGTGGTAACAACCACACGAAGATCATCCAATGGCATCAAGGATGAATATTTTCTGGGGGGTTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATATTTTAGAAGGTCAACCTATTTTATTTATCTAAATCTGTATGGTGTACTATTTATTGTCAAGATTTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597593" ref_strand="+" ref_description="SGN-E597593 [67463]">
      <seq>tgcagcttatttttgttcgcagctgtagagttttgctggaatgtcttcccctccaacacttactcatcacttgtcctcctctgtgtccatttgatcatattgggtggtctatggataagttcaccagaatatccatacgtagaaaaaacaactgataaatctacatctaagaagaaggccagataaagcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="70961" stop="70167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70661" g_stop="70465" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E597593" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70661" e_stop="70465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTAT</genome_strand>
        <mrna_strand>TGCAGCTTATTTTTGTTCGCAGCTGTAGAGTTTTGCTGGAATGTCTTCCCCTCCAACACTTACTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGGTGGTCTATGGATAAGTTCACCAGAATATCCATACGT---AGAAAAAACAACTGATAAATCTACATCTAAGAAGAAGGCCAGATAAAGCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620948" ref_strand="+" ref_description="SGN-E620948 [71655]">
      <seq>aatcattgtgacacactgaaataaataatgcattccagacggaccttgtaataacttgagatgcttcagcatctcattgaagaacagagaattttgggatgcattttgttagttcaccggactgcagcatgtacttaaagggagaagtgtatttaaatataaatgctcattgagtcaacgatgacaacctctttgtgtgaacttttttcccggtgagtcagtgaagatcacaaaaatcagctctgctccgctgctagcatggcaccaaagcaagacataaaggccttgactaacatttgccaagcaaatggaaatttggaaaattattcgctctttcactgtgttcctggttctgtatcaaagttttaattgaattaagataaaaccattgatgtcctagatcttgtttgcaggtacttctattgcttaccatatttattgtggaaaacaccatttccaaccctcctacgcttattcttgtttgcagctgtagagttttgctggaatgtcttcccctccaacacttactcttcacttgtccttctctgtgtccatttgatcatattgggcggtctatggataagttctccagaatatccatatgtagaaaaaacaactgataaatctacatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="71511" stop="70110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71211" g_stop="70740" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70656" g_stop="70489" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="635" r_length="165" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E620948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71211" e_stop="70740"/>
          <exon e_start="70656" e_stop="70489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGTGCCACACTAAAATAAATAATGCGTTTCAGACAGACATAGTAATAAATAGAGATGCTTCAGCATCTCATTGAAGAACAGAGAATTTTGGGGTGCATTTTGTTAGTAGTTCACGGGACTGCAGCATGTACTT-AAGGGAGAAGTGTATTTAAATATAAAATGCTCATTGAGT--A-GTTGACCACCTCTCTGTGTGTAACTTTTTCCCCGGTGAGTCGGTGAAGATCACAAAAAATCAGCTCCTCTCCCCTGCTAGCATGGCACCAAA-CAAGACATAAAGGCCTTGACTAACATTTGCCAAGCAAATGGAAATTTGGAAGATTACTCGCTCTTTCACTGCGTTCCTGGGTTCTGTGTCAAAGTTTTAATTGAATTAAGATAAAACCATTGATGTCCTAGAGCTTGTTTGCAGGTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACGGTATACAACTTAATACTCAAACTTCTCTGTTTGCTTTAGTTTTTTGGTATTTTCTGTTGACAAGTTTTCGTGTTGTACTGCAGTTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAA</genome_strand>
        <mrna_strand>AATCATTGTGACACACTGAAATAAATAATGCATTCCAGACGGACCTTGTAATAACTTGAGATGCTTCAGCATCTCATTGAAGAACAGAGAATTTTGGGATGCATTTTG-T--TAGTTCACCGGACTGCAGCATGTACTTAAAGGGAGAAGTGTATTTAAATAT-AAATGCTCATTGAGTCAACGATGACAACCTCTTTGTGTG-AACTTTTTTCCCGGTGAGTCAGTGAAGATCAC-AAAAATCAGCTCTGCTCCGCTGCTAGCATGGCACCAAAGCAAGACATAAAGGCCTTGACTAACATTTGCCAAGCAAATGGAAATTTGGAAAATTATTCGCTCTTTCACTGTGTTCCT-GGTTCTGTATCAAAGTTTTAATTGAATTAAGATAAAACCATTGATGTCCTAGATCTTGTTTGCAGGTACTTCTATTGCTTACCATATTTATTGTGGAAAACACCATTTCCAACCCTCCTACG...................................................................................CTTATTCTTGTTTGCAGCTGTAGAGTTTTGCTGGAATGTCTTCCCCTCCAACACTTACTCTTCACTTGTCCTTCTCTGTGTCCATTTGATCATATTGGGCGGTCTATGGATAAGTTCTCCAGAATATCCATA--T-GTAGAAAAAACAACTGATAAATCTACATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404480" ref_strand="+" ref_description="SGN-E404480 [PPC-14-M1]">
      <seq>agtggactgcatttttcctttttcatcttttgcagccatgaaaggggactgtttgctgttgtgcgttcaaaaatcattcaactgaagctcagagtttctcagagaaatccttcctcaaccaagaaagttcttcaagctgaccatattgtgacgactatgtttgttggcaatttcattggcattatatgtgcccgatccctccattaccaattntattcttgggacttctattgcttaccgtatttattgtggaaaacaccatttcctaccctcctacgcttatttttgttcgcagctgtagaagtttgctggaatgtcttcccctccaacacttactcatcacttggccctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="72266" stop="70280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71966" g_stop="71825" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71824" i_stop="71689" i_length="136">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71688" g_stop="71610" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="221" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71609" i_stop="70797" i_length="813">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.776" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70796" g_stop="70740" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="278" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70656" g_stop="70580" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="356" r_length="78" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E404480" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71966" e_stop="71825"/>
          <exon e_start="71688" e_stop="71610"/>
          <exon e_start="70796" e_stop="70740"/>
          <exon e_start="70656" e_stop="70580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGACTGCATTTTTCCTTTTTCATCTTTTGCAGGCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACCGTAAGCAACATGCACAATTTATTTTGTGATTTTTCTATACTCAAAAAGGCTGTCAAGTGTTATACTGTCACTAGTTTTGTCTTGATTTGACATGATCTTTGGTTGCTGAATTGGTCTGTGTCTATTTCATTCTCAGATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTGGTAAGTTTTTGCAGCTTATTTCTTTCTTTAGGTCATGGATTCGATCTCATACTCCTCACCTCTTAACACAAATGTCTTGATGTGTTATTAAGGGTTAGCTGAACTAATTTTCAGAGTGAATTAGAAGAAGATTTTAATTGTCCACATTAATTTAAATATGCAACTTTCCATATATTTAAACATTTGAAAAGCTTTAGTAAATGATAATTTTGCTTTGATTCTTGGAATAGTTAACAATAATATTCAGCTTGAGATAGATGCATGCTTTTATGATCTTATGTTTGTATTGAGCTCAGTTCTGGTGGTAACTGCTCATAAAAGCACAACATATATTTCAAGAGGACATAATTGAAATGTTTAATCAGAAATCAGAATGATAAACTGTTTTATTCTAACTTAGTAATTGTGCCACACTAAAATAAATAATGCGTTTCAGACAGACATAGTAATAAATAGAGATGCTTCAGCATCTCATTGAAGAACAGAGAATTTTGGGGTGCATTTTGTTAGTAGTTCACGGGACTGCAGCATGTACTTAAGGGAGAAGTGTATTTAAATATAAAATGCTCATTGAGTAGTTGACCACCTCTCTGTGTGTAACTTTTTCCCCGGTGAGTCGGTGAAGATCACAAAAAATCAGCTCCTCTCCCCTGCTAGCATGGCACCAAACAAGACATAAAGGCCTTGACTAACATTTGCCAAGCAAATGGAAATTTGGAAGATTACTCGCTCTTTCACTGCGTTCCTGGGTTCTGTGTCAAAGTTTTAATTGAATTAAGATAAAACCATTGATGTCCTAGAGCTTGTTTGCAGGTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACGGTATACAACTTAATACTCAAACTTCTCTGTTTGCTTTAGTTTTTTGGTATTTTCTGTTGACAAGTTTTCGTGTTGTACTGCAGTTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTT-GTCCTCCTCT</genome_strand>
        <mrna_strand>AGTGGACTGCATTTTTCCTTTTTCATCTTTTGCAGCCATGAAAGGGGACTGTTTGCTGTTGTGCGTTCAAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTTCTTCAAGCTGACC........................................................................................................................................ATATTGTGACGACTATGTTTGTTGGCAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTNTATTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTCTATTGCTTACCGTATTTATTGTGGAAAACACCATTTCCTACCCTCCTACG...................................................................................CTTATTTTTGTTCGCAGCTGTAGAAGTTTGCTGGAATGTCTTCCCCTCCAACACTTACTCATCACTTGGCCCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233813" ref_strand="+" ref_description="SGN-E233813 [cLED-14-P11]">
      <seq>tggagttatatctgctttagcaggggctgcattagtgcaggtgagtcggttacgagtatacttctgttgaatggagcttcttctgatcaaattctttaccaatgatcatggtgattggtgattggtgattggtgcagattctcatagggcttccttttatcctgtcacatccagcttcatatttatcaaacgctttcaatcttggtcgggttttcatccacttgtggtctgtcaacttcaaatttgttcctgaagacatctttgtttctaaagcttgtgctctctctctgctagttgctcatctcagtctgctatcggtgtttgctcattacaaatggtgcatgcatgaaggaggactgtttgctgttgtgcgttctaaaatcattcaactgaagctcagagtttctcagagaaatacttcctcaaccaagaaagtacttcatgctgaccatattgtgacgactatgtttgttgggaatttcattggcattatatgtgcccgatccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="73798" stop="71330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73498" g_stop="73459" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73458" i_stop="73101" i_length="358">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73100" g_stop="72915" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="226" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72914" i_stop="72220" i_length="695">
            <donor d_prob="0.550" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72219" g_stop="72103" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="343" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72102" i_stop="71932" i_length="171">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71931" g_stop="71825" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="450" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71824" i_stop="71689" i_length="136">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71688" g_stop="71630" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="509" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E233813" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73498" e_stop="73459"/>
          <exon e_start="73100" e_stop="72915"/>
          <exon e_start="72219" e_stop="72103"/>
          <exon e_start="71931" e_stop="71825"/>
          <exon e_start="71688" e_stop="71630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGGGTAATCTCCAAGTTCCCTTTCTAATTTCTAATGCAATGATGTTCAGCGGGCGGCATGATTTTCTTATCTTTACTTTTGTTATTGTGTTCATGACTGCAATTGTGTTCTTTGTAAATGTTGTTATGGAAAATAGTTTAAGCATGTTTCGTTATTTGGGGAGGGGAGGTTTGTGGTTGCTCCAGGATCAAGGCATCGCTTTCTTCGGCGTACTCATGAACAAAACTTGATGTTTTAACTTTTGTGTGATCTATATGTTCCATCTTCAATGCTCTTGGGCATTCTTTTAATTGTTACAATATTATTTCTATTCTTTCCTCAGAGATCGACTGATGAGTTTGTGGTTCATATGCATAGGTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTGGTACTTTCTTAAACACAATCTGTGCATAATGGGTACTCTGAGGCACCATATCAAAAATATCATGCAACTTTTGAGTCTTTAACATTGCCGTCATCCTTCTTTCTGGATTTATTTATGTTTCAGTAAAATTGTTTTAATGTGCAAAATGAATAAACATTATACCCCTGGATATTTATGAAATCAGCATTAATATGGTGATAAGAGATTGTGTATCTATTCACTTGACACACTGTTATATAATCGTGCATTATCATTATATGAAACAACATTATTGTATTTGTCATGCACTTTTTACCTTAAATGTCATCAAACAATACACTGGTATTTGGTGGTGTCTGCTAAATGTAGGAGATGCATGTTCTTACTGCTGGCTGTAGTTTGTTCTCTGTCTCGTCCCTTGGGAGTTCGGGTGGGTAGTGGGCTCGTTTCTTTCAGTGGACGTAGACAGCAAAGTACTTTTTTTCCCCATATCCCTTGAATATCACTCTTACCCTAAGCCTACTCTGATCTTCTAACTAAAGTTCAGTCAAATCCTTATAAATTTTAAGTTGTATTTGGTATGCCTTTTAGAATAATCTTATTCGCTAAGAACTGTATTTCTATCAACTGTGTTGGTGCAACATTATGCTCATGTCATGATGTTGTGCTATCCTTTACAAAGAACAATTTATCGTAACTCTCTTCTTTTGTTGCAGGTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAGGTGAGTATTTCTCATATTATCATTACATCTAGTGTAGTGGCGTTGATATTCCAGTACTGAAGTAGGAAAAGAAAAGTCATAATATGATAACTATATCATTTTCTTCTCTACATACAAAGGCAATAAGTTAGCGGCTACTGGACTGCATTTTTCCTTTTTCATCTTTTGCAGGCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACCGTAAGCAACATGCACAATTTATTTTGTGATTTTTCTATACTCAAAAAGGCTGTCAAGTGTTATACTGTCACTAGTTTTGTCTTGATTTGACATGATCTTTGGTTGCTGAATTGGTCTGTGTCTATTTCATTCTCAGATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTC</genome_strand>
        <mrna_strand>TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................GTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTGTGCTCTCTCTCTGCTAGTTGCTCATCTCAGTCTGCTATCGGTGTTTGCTCATTACAAATGGTGCAT...........................................................................................................................................................................GCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATACTTCCTCAACCAAGAAAGTACTTCATGCTGACC........................................................................................................................................ATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233326" ref_strand="+" ref_description="SGN-E233326 [cLED-9-G9]">
      <seq>tggagttatatctgctttagcaggggctgcattagtgcaggtgagtcggttacgagtatacttctgttgaatggagcttcttctgatcaaattctttaccaatgatcatggtgattggtgattggtgattggtgcagattctcatagggcttccttttatcctgtcacatccagcttcatatttatcaaacgctttcaatcttggtcgggttttcatccacttctggtctgtcaacttcaaatttgttcctgaagacatctttgtttctaaagctttagctctctctttgctagttgctcatctcagtctgctattggtgtttgctcattacagatggtgcaggcatgaatgaggactgtttgctgttgtgcgttctaaaatcattcaactgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="73798" stop="71577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73498" g_stop="73459" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73458" i_stop="73101" i_length="358">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73100" g_stop="72915" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="226" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72914" i_stop="72220" i_length="695">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72219" g_stop="72103" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="343" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72102" i_stop="71932" i_length="171">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71931" g_stop="71877" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="398" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E233326" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73498" e_stop="73459"/>
          <exon e_start="73100" e_stop="72915"/>
          <exon e_start="72219" e_stop="72103"/>
          <exon e_start="71931" e_stop="71877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGGGTAATCTCCAAGTTCCCTTTCTAATTTCTAATGCAATGATGTTCAGCGGGCGGCATGATTTTCTTATCTTTACTTTTGTTATTGTGTTCATGACTGCAATTGTGTTCTTTGTAAATGTTGTTATGGAAAATAGTTTAAGCATGTTTCGTTATTTGGGGAGGGGAGGTTTGTGGTTGCTCCAGGATCAAGGCATCGCTTTCTTCGGCGTACTCATGAACAAAACTTGATGTTTTAACTTTTGTGTGATCTATATGTTCCATCTTCAATGCTCTTGGGCATTCTTTTAATTGTTACAATATTATTTCTATTCTTTCCTCAGAGATCGACTGATGAGTTTGTGGTTCATATGCATAGGTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTGGTACTTTCTTAAACACAATCTGTGCATAATGGGTACTCTGAGGCACCATATCAAAAATATCATGCAACTTTTGAGTCTTTAACATTGCCGTCATCCTTCTTTCTGGATTTATTTATGTTTCAGTAAAATTGTTTTAATGTGCAAAATGAATAAACATTATACCCCTGGATATTTATGAAATCAGCATTAATATGGTGATAAGAGATTGTGTATCTATTCACTTGACACACTGTTATATAATCGTGCATTATCATTATATGAAACAACATTATTGTATTTGTCATGCACTTTTTACCTTAAATGTCATCAAACAATACACTGGTATTTGGTGGTGTCTGCTAAATGTAGGAGATGCATGTTCTTACTGCTGGCTGTAGTTTGTTCTCTGTCTCGTCCCTTGGGAGTTCGGGTGGGTAGTGGGCTCGTTTCTTTCAGTGGACGTAGACAGCAAAGTACTTTTTTTCCCCATATCCCTTGAATATCACTCTTACCCTAAGCCTACTCTGATCTTCTAACTAAAGTTCAGTCAAATCCTTATAAATTTTAAGTTGTATTTGGTATGCCTTTTAGAATAATCTTATTCGCTAAGAACTGTATTTCTATCAACTGTGTTGGTGCAACATTATGCTCATGTCATGATGTTGTGCTATCCTTTACAAAGAACAATTTATCGTAACTCTCTTCTTTTGTTGCAGGTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAGGTGAGTATTTCTCATATTATCATTACATCTAGTGTAGTGGCGTTGATATTCCAGTACTGAAGTAGGAAAAGAAAAGTCATAATATGATAACTATATCATTTTCTTCTCTACATACAAAGGCAATAAGTTAGCGGCTACTGGACTGCATTTTTCCTTTTTCATCTTTTGCAGGCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTC</genome_strand>
        <mrna_strand>TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................GTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTAGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAG...........................................................................................................................................................................GCATGAATGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594082" ref_strand="+" ref_description="SGN-E594082 [37326]">
      <seq>ctcagattctttttggctttctctacatgctggatctagcaattgtcgtgttcatctacttgaagactgatgtggtaccttgngtgggctctctccttggctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctcctccatgctgcattggtctcaattatttgccaaaaatggcatctagggttggtaattttcagcggagctgtttccataaagatgaatgtgctcctgtatgcaccacctctgttgctcctgatggtgaaggcaatggatattgttggagtgatatctgctttagcaggggctgcattagtgcaggtggattctcatagggcttccttttatcctgtcgcatccagcttcatatttatcgaacgctttcaatcttggtcgggttttcatccacttctggtctgtcaacttcaaatttgttcctgaagacatctttgtttctaaagcttttgctctctctttgctagttgctcatctcagtctgctattggtttttgctcattacagatggtgcaggtgagtatttctcatattatcatacatctagtgtagtggcattgatattccaggtattgaagtaggaaaagaaaagtcatatcatgttaacgatattatttcttctctacatacgaaagtaatgagttagcggccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="75343" stop="71665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75045" g_stop="74972" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73947" g_stop="73790" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="234" r_length="160" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73680" g_stop="73614" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="301" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73613" i_stop="73513" i_length="101">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73512" g_stop="73455" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="359" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73454" i_stop="73004" i_length="451">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73003" g_stop="72915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="448" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72914" i_stop="72220" i_length="695">
            <donor d_prob="0.550" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72219" g_stop="71965" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="702" r_length="254" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E594082" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75045" e_stop="74972"/>
          <exon e_start="73947" e_stop="73790"/>
          <exon e_start="73680" e_stop="73614"/>
          <exon e_start="73512" e_stop="73455"/>
          <exon e_start="73003" e_stop="72915"/>
          <exon e_start="72219" e_stop="71965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTG-GTGGGCTCTCTCCTT-GCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAGGTATATTCTTGCTTGCTTAGACATTTTAATCGTTGGATTAAATTTTTCTCTATGTCATTGATTAAAAACCATCAGTTAAGATTGATCAATGGTCTTCTCTTTCGTACAGCGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATGGTGAAGGTATACTATTGGGACAGTATAGGTCATTAATAATCTCTGTAGGACGTTGAATTACATCTCTGATTAGCTTCTGTGTTATATGGTGGGAACTTGAAATACAGGCAATGGATATTGTTGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGGGTAATCTCCAAGTTCCCTTTCTAATTTCTAATGCAATGATGTTCAGCGGGCGGCATGATTTTCTTATCTTTACTTTTGTTATTGTGTTCATGACTGCAATTGTGTTCTTTGTAAATGTTGTTATGGAAAATAGTTTAAGCATGTTTCGTTATTTGGGGAGGGGAGGTTTGTGGTTGCTCCAGGATCAAGGCATCGCTTTCTTCGGCGTACTCATGAACAAAACTTGATGTTTTAACTTTTGTGTGATCTATATGTTCCATCTTCAATGCTCTTGGGCATTCTTTTAATTGTTACAATATTATTTCTATTCTTTCCTCAGAGATCGACTGATGAGTTTGTGGTTCATATGCATAGGTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTGGTACTTTCTTAAACACAATCTGTGCATAATGGGTACTCTGAGGCACCATATCAAAAATATCATGCAACTTTTGAGTCTTTAACATTGCCGTCATCCTTCTTTCTGGATTTATTTATGTTTCAGTAAAATTGTTTTAATGTGCAAAATGAATAAACATTATACCCCTGGATATTTATGAAATCAGCATTAATATGGTGATAAGAGATTGTGTATCTATTCACTTGACACACTGTTATATAATCGTGCATTATCATTATATGAAACAACATTATTGTATTTGTCATGCACTTTTTACCTTAAATGTCATCAAACAATACACTGGTATTTGGTGGTGTCTGCTAAATGTAGGAGATGCATGTTCTTACTGCTGGCTGTAGTTTGTTCTCTGTCTCGTCCCTTGGGAGTTCGGGTGGGTAGTGGGCTCGTTTCTTTCAGTGGACGTAGACAGCAAAGTACTTTTTTTCCCCATATCCCTTGAATATCACTCTTACCCTAAGCCTACTCTGATCTTCTAACTAAAGTTCAGTCAAATCCTTATAAATTTTAAGTTGTATTTGGTATGCCTTTTAGAATAATCTTATTCGCTAAGAACTGTATTTCTATCAACTGTGTTGGTGCAACATTATGCTCATGTCATGATGTTGTGCTATCCTTTACAAAGAACAATTTATCGTAACTCTCTTCTTTTGTTGCAGGTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAGGTGAGTATTTCTCATATTATCATTACATCTAGTGTAGTGGCGTTGATATTCCA-GTACTGAAGTAGGAAAAGAAAAGTCATAATATGATAACTATATCATTTTCTTCTCTACATACAAAGGCAATAAGTTAGCGGCTAC</genome_strand>
        <mrna_strand>CTCAGATTCTTTTTGGCTTTCTCTACATGCTGGATCTAGCAATTGTCGTGTTCATCTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGNGTGGGCTCTCTCCTTGGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATTTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG.............................................................................................................CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTGATGGTGAAG.....................................................................................................GCAATGGATATTGTTGGAGTGATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCATAGGGCTTCCTTTTATCCTGTCGCATCCAGCTTCATATTTATCGAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTTTTTGCTCATTACAGATGGTGCAGGTGAGTATTTCTCATATTATCA-TACATCTAGTGTAGTGGCATTGATATTCCAGGTATTGAAGTAGGAAAAGAAAAGTCATATCATGTTAACGATATTA-TTTCTTCTCTACATACGAAAGTAATGAGTTAGCGGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618692" ref_strand="+" ref_description="SGN-E618692 [69373]">
      <seq>ctgattctatcctcgtcgcgttgattatcgcttacgttccatatacgaaaattgattgggatgctgatatgtctcaggttactggttttctcgaaggagagagggattacagtaacttgaaaggtgacacggggcctctagtttacccagcaggctttctttatatttactctgctatacaatatgttactggaggtcaagtctatcctgctcagattctttttggctttctctacatgctggatctagcaattgtcgtgttcatctacttgaagactgatgtggtaccttggtgggctctctccttgctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctcctccatgctgcattggtctcaattatttgccaaaaatggcatctagggttggtaattttcagcggagctgtttccataaagatgaatgtgctcctgtatgcaccacctctgttgctcctgatggtgaaggcaatggatattgttggagtgatatctgctttagcaggggctgcattagtgcagattctcatagggcttccttttatcctgtcgcatccagcttcatatttatcgaacgctttcaatctgggtcgggttttcatccacttctggtctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="76676" stop="72607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76335" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76229" g_stop="76195" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="77" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75850" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="215" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75040" g_stop="74972" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="284" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73947" g_stop="73790" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="442" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73680" g_stop="73614" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="509" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73613" i_stop="73513" i_length="101">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73512" g_stop="73459" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="563" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73458" i_stop="73004" i_length="455">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73003" g_stop="72915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="652" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E618692" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76335"/>
          <exon e_start="76229" e_stop="76195"/>
          <exon e_start="75987" e_stop="75850"/>
          <exon e_start="75040" e_stop="74972"/>
          <exon e_start="73947" e_stop="73790"/>
          <exon e_start="73680" e_stop="73614"/>
          <exon e_start="73512" e_stop="73459"/>
          <exon e_start="73003" e_stop="72915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCATGTAAGTTTCAGTTTTCCACACTTCATTTCCATTTTTTTTTCTTATGTGTGTATGAAATCATAAAATTCATAAATTGTGAAATTCCTCAATTTCTCCTTTTTTTAGATACGAAAATTGATTGGGATGCTTATATGTCTCAGGTGAGAGTTCAACATTTTGATCTGTTTGTTTGTCTTGTTCAGTAATGTAGCAACGGTTTGAGTTGAATTCAGTCTGATCAGTAATTTGGCTTAAATGACAAATTAAGGCAAAATATTTACCAGTATTTGACATTATAGTGTGATTTATTGATATCTTACTTATATAGTTTTGATTGATTGATTTTTTATTTTTTTTTGGTTTAATAGGTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAGGTAATTTTCCTACTTTCTCCATTTCCGTGAGGTGCCTTTTTTTGCGGTGATAGCCAGTGAACTTGCGTAAGGAGTTGTTAGATTGATTGTGATTGTCCACTTTCAAATTTGATTAGATTTGAAAGAGCACGTAAATGCAGTTAATTGGTTGTCCCCTTCCAAATTTCATAGATTTTGCTACTGAATTTTAAGTAAGTGAGACAATAGTTGTTATGTGTTAACAAATAATAAAATGGAAGCATAGCATCTGTATTGATGATGTGAACTAGTAAAGTAGGTGTTTTCTTATGCAGGCTTTGATTTCTAAGCAGCTACATTAACAATCTTAACTCTTGCTTTGCTTCGACTCTGTGTCATAATTTTTGGAACTCCAGCTAGATATTCATGCCCGTGAGGCGTGATGCACTTTTCTTTGAAGATGCTACTACTCTTGGAAGTATACCATCTTCTAGAGTGTTTCTTTTCCAATAATGACAATCTGAAGTAAATATTTTCTTTTCCTCTAACTTAATACTAACTAGAAAAAATTGCAATGGTACACTTTCTATGCTTGTGTGGCTGGTGTAAGCTTAAAGTAGATTCCAGCATGAGAAAAAAAATTAGTATCCTTTTTCTGGGTTTTGCATGTTCTGGAAGGTTCATACATACATAAGGTGTAGTCACTTGTTTAGCTAACTAGTTGTGACTTTTGTATAATGTGGGCATATTCAGCTCGTTCATTGGATAATCCGTACACTATTATGTCCTTCGGTATATGGTCACGTTACTTGCTGCCAGTTGTTGATTTCTATTTTCTCATGCCAGTGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAGGTATATTCTTGCTTGCTTAGACATTTTAATCGTTGGATTAAATTTTTCTCTATGTCATTGATTAAAAACCATCAGTTAAGATTGATCAATGGTCTTCTCTTTCGTACAGCGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATGGTGAAGGTATACTATTGGGACAGTATAGGTCATTAATAATCTCTGTAGGACGTTGAATTACATCTCTGATTAGCTTCTGTGTTATATGGTGGGAACTTGAAATACAGGCAATGGATATTGTTGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGGGTAATCTCCAAGTTCCCTTTCTAATTTCTAATGCAATGATGTTCAGCGGGCGGCATGATTTTCTTATCTTTACTTTTGTTATTGTGTTCATGACTGCAATTGTGTTCTTTGTAAATGTTGTTATGGAAAATAGTTTAAGCATGTTTCGTTATTTGGGGAGGGGAGGTTTGTGGTTGCTCCAGGATCAAGGCATCGCTTTCTTCGGCGTACTCATGAACAAAACTTGATGTTTTAACTTTTGTGTGATCTATATGTTCCATCTTCAATGCTCTTGGGCATTCTTTTAATTGTTACAATATTATTTCTATTCTTTCCTCAGAGATCGACTGATGAGTTTGTGGTTCATATGCATAGGTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG</genome_strand>
        <mrna_strand>CTGATTCTATCCTCGTCGCGTTGATTATCGCTTACGTTCCAT.........................................................................................................ATACGAAAATTGATTGGGATGCTGATATGTCTCAG...............................................................................................................................................................................................................GTTACTGGTTTTCTCGAAGGAGAGAGGGATTACAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTGGCTTTCTCTACATGCTGGATCTAGCAATTGTCGTGTTCATCTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATTTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG.............................................................................................................CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTGATGGTGAAG.....................................................................................................GCAATGGATATTGTTGGAGTGATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCATAGGGCTTCCTTTTATCCTGTCGCATCCAGCTTCATATTTATCGAACGCTTTCAATCTGGGTCGGGTTTTCATCCACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333474" ref_strand="+" ref_description="SGN-E333474 [cTOD-20-M10]">
      <seq>cgagatcgtcagttctcctgctccggcagccatggccgccaaagcagctgctatacgcaagagtaatagatcggagaatttcattcaaaaactcgttaaaaatcctaaaataccttttgctattgcaatactcattgctgatgccatcctcgttgcgttgattatcgcttacgttccatatacgaaaattgattgggatgcttatatgtctcaggttactggttttctcgaaggagagagggattatagtaacttgaaaggtgacacggggcctctagtttacccagcaggctttctttatatttactctgctatacaatatgttactggaggtcaagtctatcctgctcagattctttttggctttctctacgtgctggatcttgcaattgtcttgttcatctacttgaagactgatgtggtaccttggtgggctctctccttgctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctcctccatgctgcattggtctcaattatctgccaaaaatggcatctagggttggtaattttcagcggagctgtttccataaagatgaatgtgctcctgtatgcaccacctctgttgctcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="76813" stop="73320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76513" g_stop="76335" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76229" g_stop="76195" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="214" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75850" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="352" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75040" g_stop="74972" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="421" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73947" g_stop="73790" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="579" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73680" g_stop="73620" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="640" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E333474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76513" e_stop="76335"/>
          <exon e_start="76229" e_stop="76195"/>
          <exon e_start="75987" e_stop="75850"/>
          <exon e_start="75040" e_stop="74972"/>
          <exon e_start="73947" e_stop="73790"/>
          <exon e_start="73680" e_stop="73620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATCGTCAGTTCTCCTGCTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAGTAATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCATGTAAGTTTCAGTTTTCCACACTTCATTTCCATTTTTTTTTCTTATGTGTGTATGAAATCATAAAATTCATAAATTGTGAAATTCCTCAATTTCTCCTTTTTTTAGATACGAAAATTGATTGGGATGCTTATATGTCTCAGGTGAGAGTTCAACATTTTGATCTGTTTGTTTGTCTTGTTCAGTAATGTAGCAACGGTTTGAGTTGAATTCAGTCTGATCAGTAATTTGGCTTAAATGACAAATTAAGGCAAAATATTTACCAGTATTTGACATTATAGTGTGATTTATTGATATCTTACTTATATAGTTTTGATTGATTGATTTTTTATTTTTTTTTGGTTTAATAGGTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAGGTAATTTTCCTACTTTCTCCATTTCCGTGAGGTGCCTTTTTTTGCGGTGATAGCCAGTGAACTTGCGTAAGGAGTTGTTAGATTGATTGTGATTGTCCACTTTCAAATTTGATTAGATTTGAAAGAGCACGTAAATGCAGTTAATTGGTTGTCCCCTTCCAAATTTCATAGATTTTGCTACTGAATTTTAAGTAAGTGAGACAATAGTTGTTATGTGTTAACAAATAATAAAATGGAAGCATAGCATCTGTATTGATGATGTGAACTAGTAAAGTAGGTGTTTTCTTATGCAGGCTTTGATTTCTAAGCAGCTACATTAACAATCTTAACTCTTGCTTTGCTTCGACTCTGTGTCATAATTTTTGGAACTCCAGCTAGATATTCATGCCCGTGAGGCGTGATGCACTTTTCTTTGAAGATGCTACTACTCTTGGAAGTATACCATCTTCTAGAGTGTTTCTTTTCCAATAATGACAATCTGAAGTAAATATTTTCTTTTCCTCTAACTTAATACTAACTAGAAAAAATTGCAATGGTACACTTTCTATGCTTGTGTGGCTGGTGTAAGCTTAAAGTAGATTCCAGCATGAGAAAAAAAATTAGTATCCTTTTTCTGGGTTTTGCATGTTCTGGAAGGTTCATACATACATAAGGTGTAGTCACTTGTTTAGCTAACTAGTTGTGACTTTTGTATAATGTGGGCATATTCAGCTCGTTCATTGGATAATCCGTACACTATTATGTCCTTCGGTATATGGTCACGTTACTTGCTGCCAGTTGTTGATTTCTATTTTCTCATGCCAGTGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAGGTATATTCTTGCTTGCTTAGACATTTTAATCGTTGGATTAAATTTTTCTCTATGTCATTGATTAAAAACCATCAGTTAAGATTGATCAATGGTCTTCTCTTTCGTACAGCGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATG</genome_strand>
        <mrna_strand>CGAGATCGTCAGTTCTCCTGCTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAGTAATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCAT.........................................................................................................ATACGAAAATTGATTGGGATGCTTATATGTCTCAG...............................................................................................................................................................................................................GTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG.............................................................................................................CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452659" ref_strand="+" ref_description="SGN-E452659 [cSTS-17-D9]">
      <seq>ctccggcagccatggcagccaaagcagctgctatacgcaagagttcacatagatcggaaaatttcattcaaaaactctttaaaaatcctaaaataccttttgctattgcattactcatcgctgattctatcctcgtcgcgttgattatcgcttacgttccatatacgaaaattgattgggatgcttatatgtctcaggttactggttttctcgaaggagagagggattacagtaacttgaaaggtgacacggggcctctagtttacccagcaggctttctttatatttactctgctatacaatatgttactggaggtcaagtctatcctgctcagattctttttggctttctctacatgctggatctagcaattgtcgtgttcatgtacttgaagactgatgtggtaccttggtgggctctctccttgctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctcctccatgctgcattggtctcaattatttgccaaaaatggcatctanggttggtaattttcagcggagctgtttccataaagatgaatgtgctcctgtatgcaccacctctgttgctcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="76793" stop="73321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76493" g_stop="76335" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76229" g_stop="76195" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="197" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75850" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="335" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75040" g_stop="74972" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73947" g_stop="73790" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="562" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73680" g_stop="73621" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="622" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E452659" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76493" e_stop="76335"/>
          <exon e_start="76229" e_stop="76195"/>
          <exon e_start="75987" e_stop="75850"/>
          <exon e_start="75040" e_stop="74972"/>
          <exon e_start="73947" e_stop="73790"/>
          <exon e_start="73680" e_stop="73621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAG-T-A-ATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCATGTAAGTTTCAGTTTTCCACACTTCATTTCCATTTTTTTTTCTTATGTGTGTATGAAATCATAAAATTCATAAATTGTGAAATTCCTCAATTTCTCCTTTTTTTAGATACGAAAATTGATTGGGATGCTTATATGTCTCAGGTGAGAGTTCAACATTTTGATCTGTTTGTTTGTCTTGTTCAGTAATGTAGCAACGGTTTGAGTTGAATTCAGTCTGATCAGTAATTTGGCTTAAATGACAAATTAAGGCAAAATATTTACCAGTATTTGACATTATAGTGTGATTTATTGATATCTTACTTATATAGTTTTGATTGATTGATTTTTTATTTTTTTTTGGTTTAATAGGTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAGGTAATTTTCCTACTTTCTCCATTTCCGTGAGGTGCCTTTTTTTGCGGTGATAGCCAGTGAACTTGCGTAAGGAGTTGTTAGATTGATTGTGATTGTCCACTTTCAAATTTGATTAGATTTGAAAGAGCACGTAAATGCAGTTAATTGGTTGTCCCCTTCCAAATTTCATAGATTTTGCTACTGAATTTTAAGTAAGTGAGACAATAGTTGTTATGTGTTAACAAATAATAAAATGGAAGCATAGCATCTGTATTGATGATGTGAACTAGTAAAGTAGGTGTTTTCTTATGCAGGCTTTGATTTCTAAGCAGCTACATTAACAATCTTAACTCTTGCTTTGCTTCGACTCTGTGTCATAATTTTTGGAACTCCAGCTAGATATTCATGCCCGTGAGGCGTGATGCACTTTTCTTTGAAGATGCTACTACTCTTGGAAGTATACCATCTTCTAGAGTGTTTCTTTTCCAATAATGACAATCTGAAGTAAATATTTTCTTTTCCTCTAACTTAATACTAACTAGAAAAAATTGCAATGGTACACTTTCTATGCTTGTGTGGCTGGTGTAAGCTTAAAGTAGATTCCAGCATGAGAAAAAAAATTAGTATCCTTTTTCTGGGTTTTGCATGTTCTGGAAGGTTCATACATACATAAGGTGTAGTCACTTGTTTAGCTAACTAGTTGTGACTTTTGTATAATGTGGGCATATTCAGCTCGTTCATTGGATAATCCGTACACTATTATGTCCTTCGGTATATGGTCACGTTACTTGCTGCCAGTTGTTGATTTCTATTTTCTCATGCCAGTGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAGGTATATTCTTGCTTGCTTAGACATTTTAATCGTTGGATTAAATTTTTCTCTATGTCATTGATTAAAAACCATCAGTTAAGATTGATCAATGGTCTTCTCTTTCGTACAGCGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCAT</genome_strand>
        <mrna_strand>CTCCGGCAGCCATGGCAGCCAAAGCAGCTGCTATACGCAAGAGTTCACATAGATCGGAAAATTTCATTCAAAAACTCTTTAAAAATCCTAAAATACCTTTTGCTATTGCATTACTCATCGCTGATTCTATCCTCGTCGCGTTGATTATCGCTTACGTTCCAT.........................................................................................................ATACGAAAATTGATTGGGATGCTTATATGTCTCAG...............................................................................................................................................................................................................GTTACTGGTTTTCTCGAAGGAGAGAGGGATTACAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTGGCTTTCTCTACATGCTGGATCTAGCAATTGTCGTGTTCATGTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATTTGCCAAAAATGGCATCTANGGTTGGTAATTTTCAG.............................................................................................................CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424565" ref_strand="+" ref_description="SGN-E424565 [STM-43-D14]">
      <seq>ctccggcagccatggcagccaaagcagctgctatacgcaagagttcacatagatcggaaaatttcattcaaaaactctttaaaaatcctaaaataccttttgctattgcattactcatcgctgattctatcctcgtcgcgttgattatcgcttacgttccatatacgaaaattgattgggatgcttatatgtctcaggttactggttttctcgaaggagagagggattacagtaacttgaaaggtgacacggggcctctagtttacccagcaggctttctttatatttactctgctatacaatatgttactggaggtcaagtctatcctgctcagattctttttggctttctctacatgctggatctagcaattgtcgtgttcatgtacttgaagactgatgtggtaccttggtgggctctctccttgctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctccctcatgctgcattggtctcaattatttgccaaaaatggcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="76793" stop="73508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76493" g_stop="76335" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76229" g_stop="76195" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="197" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75850" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="335" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75040" g_stop="74972" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73947" g_stop="73808" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="544" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E424565" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76493" e_stop="76335"/>
          <exon e_start="76229" e_stop="76195"/>
          <exon e_start="75987" e_stop="75850"/>
          <exon e_start="75040" e_stop="74972"/>
          <exon e_start="73947" e_stop="73808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAG-T-A-ATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCATGTAAGTTTCAGTTTTCCACACTTCATTTCCATTTTTTTTTCTTATGTGTGTATGAAATCATAAAATTCATAAATTGTGAAATTCCTCAATTTCTCCTTTTTTTAGATACGAAAATTGATTGGGATGCTTATATGTCTCAGGTGAGAGTTCAACATTTTGATCTGTTTGTTTGTCTTGTTCAGTAATGTAGCAACGGTTTGAGTTGAATTCAGTCTGATCAGTAATTTGGCTTAAATGACAAATTAAGGCAAAATATTTACCAGTATTTGACATTATAGTGTGATTTATTGATATCTTACTTATATAGTTTTGATTGATTGATTTTTTATTTTTTTTTGGTTTAATAGGTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAGGTAATTTTCCTACTTTCTCCATTTCCGTGAGGTGCCTTTTTTTGCGGTGATAGCCAGTGAACTTGCGTAAGGAGTTGTTAGATTGATTGTGATTGTCCACTTTCAAATTTGATTAGATTTGAAAGAGCACGTAAATGCAGTTAATTGGTTGTCCCCTTCCAAATTTCATAGATTTTGCTACTGAATTTTAAGTAAGTGAGACAATAGTTGTTATGTGTTAACAAATAATAAAATGGAAGCATAGCATCTGTATTGATGATGTGAACTAGTAAAGTAGGTGTTTTCTTATGCAGGCTTTGATTTCTAAGCAGCTACATTAACAATCTTAACTCTTGCTTTGCTTCGACTCTGTGTCATAATTTTTGGAACTCCAGCTAGATATTCATGCCCGTGAGGCGTGATGCACTTTTCTTTGAAGATGCTACTACTCTTGGAAGTATACCATCTTCTAGAGTGTTTCTTTTCCAATAATGACAATCTGAAGTAAATATTTTCTTTTCCTCTAACTTAATACTAACTAGAAAAAATTGCAATGGTACACTTTCTATGCTTGTGTGGCTGGTGTAAGCTTAAAGTAGATTCCAGCATGAGAAAAAAAATTAGTATCCTTTTTCTGGGTTTTGCATGTTCTGGAAGGTTCATACATACATAAGGTGTAGTCACTTGTTTAGCTAACTAGTTGTGACTTTTGTATAATGTGGGCATATTCAGCTCGTTCATTGGATAATCCGTACACTATTATGTCCTTCGGTATATGGTCACGTTACTTGCTGCCAGTTGTTGATTTCTATTTTCTCATGCCAGTGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCT</genome_strand>
        <mrna_strand>CTCCGGCAGCCATGGCAGCCAAAGCAGCTGCTATACGCAAGAGTTCACATAGATCGGAAAATTTCATTCAAAAACTCTTTAAAAATCCTAAAATACCTTTTGCTATTGCATTACTCATCGCTGATTCTATCCTCGTCGCGTTGATTATCGCTTACGTTCCAT.........................................................................................................ATACGAAAATTGATTGGGATGCTTATATGTCTCAG...............................................................................................................................................................................................................GTTACTGGTTTTCTCGAAGGAGAGAGGGATTACAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTGGCTTTCTCTACATGCTGGATCTAGCAATTGTCGTGTTCATGTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCCTCATGCTGCATTGGTCTCAATTATTTGCCAAAAATGGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596714" ref_strand="+" ref_description="SGN-E596714 [40201]">
      <seq>aaaacacagaattactacaaatcacaacaaaacgaacctcaacaaacagagcaacacacaaaatctgtcacgataacgattctaaaacgaacaaaaacatcaacaatcaacagaaaacagatagcccaacgaggctccaatcattaacaatcgctttaacgattccacttttattaacccttatagacatttctcttttcggatcaagttaccagtacgtttcaatggagaagcctttttggttcccacgtttatgggctttacatttagcctgtttgggttcttctcttcttatgggtctttctgcttggcttgtttgggctgaagtgggtttcatcgtaaacctatggctatgcttttgtatttaagccaattaggttgagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="82765" stop="83728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83075" g_stop="83428" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="388" r_length="348" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E596714" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83075" e_stop="83428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAGAGCAATACACAAAATCTGCTCACGATAAGGATTCAAAATCGAACAAAAACATCAACAGATCAACAAGAAAACAGATCGCTAAACGAGGCGTCAAATCATTGACAATCGCTTTATCAATTCCACTTCTATTAACCCTAATTGACATCTCTCTATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGG</genome_strand>
        <mrna_strand>AACAAACAGAGCAACACACAAAATCTG-TCACGATAACGATTCTAAAACGAACAAAAACATCAACA-ATCAACA-GAAAACAGATAGCCCAACGAGGC-TCCAATCATTAACAATCGCTTTAACGATTCCACTTTTATTAACCCTTATAGACATTTCTCTTTTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTTTGGTTCCCACGTTTATGGGCTTTACATTTAGCCTGTTTGGGTTCTTCTCTTCTTATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAA-GTGGGTTTCATCGTAAACCTATGGCTATGCTTTTGTATTTAAGCCAATTA-GGTTGAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479760" ref_strand="+" ref_description="SGN-E479760 [cSTD-11-A10]">
      <seq>acaaaatctgctcacgataacgattctaaaacgaacaaaaacatcaacaaatcaacaagaaaacagatagccaaacgaggcctcaaatcattaacaatcgctttaacgattccacttttattaacccttatagacatttctcttttcggatcaagttaccagtacgtttcaatggagaagcctttttggttcccacgtttatgggctttacatttagcctgtttgggttcttctcttcttatgggtctttctgcttggcttgtttgggctgaaggtgggtttcatcgtaaacctatggctatgcttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="82792" stop="83706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83092" g_stop="83406" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E479760" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83092" e_stop="83406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTGCTCACGATAAGGATTCAAAATCGAACAAAAACATCAACAGATCAACAAGAAAACAGATCGCTAAACGAGGCGTCAAATCATTGACAATCGCTTTATCAATTCCACTTCTATTAACCCTAATTGACATCTCTCTATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTA</genome_strand>
        <mrna_strand>ACAAAATCTGCTCACGATAACGATTCTAAAACGAACAAAAACATCAACAAATCAACAAGAAAACAGATAGCCAAACGAGGCCTCAAATCATTAACAATCGCTTTAACGATTCCACTTTTATTAACCCTTATAGACATTTCTCTTTTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTTTGGTTCCCACGTTTATGGGCTTTACATTTAGCCTGTTTGGGTTCTTCTCTTCTTATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTAAACCTATGGCTATGCTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207956" ref_strand="+" ref_description="SGN-E207956 [cLEC-34-L23]">
      <seq>cacatgtaaatttaatttaattaaaacataaatatagaacatgtaaatttacagtacataagcctcacaagccaaaacaaaacaaaaaacaagtgcatattatttatttcttcctaatgatacacaagcttaagatttgctaaactcaaaagcacagcccatccaaaacaaggtttaaccaaatccccagcaataggattcacatttttaaaagccctaaaacaaccaatcaacactccaaacaaagccacacataacactaacccaattctagtagcacctgctttgaacacaactggatcccaagccaaactcaaccctaattgagctaaatacaaaattatagccataggttgacgatgaaacccaccttcagcccaaacaagccaagcagaaagacccattagaagagaagaacctaaacaggctaaatgtaaagcccatagacgcggaaaccagaaaggcttctccattgaaacgtactggtaacttgatccgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="84035" stop="82935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83735" g_stop="83235" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E207956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83735" e_stop="83235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGTAAATTTAATTTAATTAAAACATAAATATAGAACATGTAAATTTACAGTACATAAGCCTCACAAGCCAAAACAAAACAAAAAACAAGTGCATATTATTTATTTCTTCCTAATGATACACAAGCTTAAGATTTGCTAAACTCAAAAGCACAGCCCATCCAAAACAAGGTTTAACCAAATCCCCAGCAATAGGATTCACATTTTTAAAAGCCCTAAAACAACCAATCAACACTCCAAACAAAGCCACACATAACACTAACCCAATTCTAGTAGCACCTGCTTTGAACACAACTGGATCCCAAGCCAAACTCAACCCTAATTGAGCTAAATACAAAATTATAGCCATAGGTTGACGATGAAACCCACCTTCAGCCCAAACAAGCCAAGCAGAAAGACCCATTAGAAGAGAAGAACCTAAACAGGCTAAATGTAAAGCCCATAGACGCGGAAACCAGAAAGGCTTCTCCATTGAAACGTACTGGTAACTTGATCCGAAT</genome_strand>
        <mrna_strand>CACATGTAAATTTAATTTAATTAAAACATAAATATAGAACATGTAAATTTACAGTACATAAGCCTCACAAGCCAAAACAAAACAAAAAACAAGTGCATATTATTTATTTCTTCCTAATGATACACAAGCTTAAGATTTGCTAAACTCAAAAGCACAGCCCATCCAAAACAAGGTTTAACCAAATCCCCAGCAATAGGATTCACATTTTTAAAAGCCCTAAAACAACCAATCAACACTCCAAACAAAGCCACACATAACACTAACCCAATTCTAGTAGCACCTGCTTTGAACACAACTGGATCCCAAGCCAAACTCAACCCTAATTGAGCTAAATACAAAATTATAGCCATAGGTTGACGATGAAACCCACCTTCAGCCCAAACAAGCCAAGCAGAAAGACCCATTAGAAGAGAAGAACCTAAACAGGCTAAATGTAAAGCCCATAGACGCGGAAACCAGAAAGGCTTCTCCATTGAAACGTACTGGTAACTTGATCCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290510" ref_strand="-" ref_description="SGN-E290510 [cLES-20-M15]">
      <seq>atgggctttacatttagcctgtttaggttcttctcttctaatgggtctttctgcttggcttgtttgggctgaaggtgggtttcatcgtcaacctatggctataattttgtatttagctcaattagggttgagtttggcttgggatccagttgtgttcaaagcaggtgctactagaattgggttagtgttatgtgtggctttgtttggagtgttgattggttgttttagggcttttaaaaatgtgaatcctattgctggggatttggttaaaccttgttttggatgggctgtgcttttgagtttagcaaatcttaagcttgtgtatcattaggaagaaataaataatatgcccttgttttttgttttgttttggcttgtgaggcttatgtactgtaaatttacatgttctatatttatgttttaattaaattaaatttacatgtgtgttctataaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="82992" stop="84044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83292" g_stop="83743" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="473"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E290510" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83292" e_stop="83743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</genome_strand>
        <mrna_strand>ATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCCCTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717900" ref_strand="+" ref_description="SGN-E717900 [FC03AC07]">
      <seq>tcggccgaattggaagctctcctgtaaaactccattacttagtttttctccatctctaccatggctgacgcagctgcaacgccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccagcaaacacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaacttaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggtccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcagacatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtcaaggagctatacacaaaatacgagccagtgatcgagaaaaatgcggttttggcatggagatctctgaataagcttcctttgttccctcaagtggctcagattttagtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatacggcggcgcattatttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97852" stop="99959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98144" g_stop="98347" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="429" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99659" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="819" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E717900" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98144" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCC-TTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCG</genome_strand>
        <mrna_strand>TCGGCCGAATTGGAAGCTCTCCTGTA-AAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTAGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691135" ref_strand="+" ref_description="SGN-E691135 [LH_Ea05F05]">
      <seq>cgatactccattacttagttttctccatctctaccatggctgcctcagctgcaacgccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccgcctactagtactgatccagcaagcacgacgccgccgactagtactgatccagtagcagaagatgagaggaaactcgaatatctggatttcgttcaagttgcagcgatctatatgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgaccaaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcagacatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacatcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtcaaggagctatacacaaaatacgagccagtgatcgagaaaaacgcggttttggcatggagatctctgaataagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgccgcggcgcattatttttcgattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97870" stop="99966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98168" g_stop="98360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98361" i_stop="98781" i_length="421">
            <donor d_prob="0.779" d_score="0.52"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="413" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99666" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="810" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E691135" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98168" e_stop="98360"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTC</genome_strand>
        <mrna_strand>CGATACTCCATTACTTAG-TTTTCTCCATCTCTACCATGGCTGCCTCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCGCCTACTAGTACTGATCCAGCAAGCAC-GACGCCGCCGA-CTAGTACTGAT-CCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCGAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATATGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCAAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACATCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAACGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCCGCGGCGCATTATTTTTCGATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312737" ref_strand="+" ref_description="SGN-E312737 [cTOA-8-E14]">
      <seq>acttagtttttctccatctctaccatggctgacgcagctgcaacgccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccagcaaacacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaacttaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggtccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcagacatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97880" stop="99727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98180" g_stop="98347" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="393" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99427" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="551" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E312737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98180" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGT</genome_strand>
        <mrna_strand>ACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599389" ref_strand="+" ref_description="SGN-E599389 [52375]">
      <seq>cttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagcattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggttgacataatgcgtcggagaacggctatgcggtgggcgcattaatttccgattattcccgtagagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98181" g_stop="98347" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="394" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99678" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="807" r_length="413" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E599389" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98181" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAG-ATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGG-TGACAT-ATGCGTCGGAGAACGGCTATACGG-CGGCGCATTATTTACCGATTATTCCCGTAGAGAGGA</genome_strand>
        <mrna_strand>CTTAG-TTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGCATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTTGACATAATGCGTCGGAGAACGGCTATGCGGTGGGCGCATTAATTTCCGATTATTCCCGTAGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558849" ref_strand="+" ref_description="SGN-E558849 [18252]">
      <seq>cttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98181" g_stop="98347" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="394" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="541" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E558849" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98181" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACA</genome_strand>
        <mrna_strand>CTTAG-TTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333037" ref_strand="+" ref_description="SGN-E333037 [cTOD-19-I1]">
      <seq>ttagtttttctccatctctaccatggctgacgcagctgcaacgccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccagcaaacacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaacttaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggtccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcagacatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtcaaggagctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97882" stop="99775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98182" g_stop="98347" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="391" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99475" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="597" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E333037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98182" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATA</genome_strand>
        <mrna_strand>TTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598764" ref_strand="+" ref_description="SGN-E598764 [51737]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtgacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaacatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttatcggagtgagaaatacaatcaaagcggtgacatatgcgtcggaagaacgggctatgcggtggcgcattatttgcccgaattattcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99670" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="816" r_length="407" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E598764" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGT-ACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATC-AAGCGGTGACATATGCGTCGG-AGAAC-GGCTATACGGCGGCGCATTATTT-ACCG-ATTATTCCCGT</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTGACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAACATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATCGGAGTGAGAAATACAATCAAAGCGGTGACATATGCGTCGGAAGAACGGGCTATGCGGTGGCGCATTATTTGCCCGAATTATTCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597673" ref_strand="+" ref_description="SGN-E597673 [67544]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttatgggagtgagaaatacaatcaaggcggtgacatatgcgtcggagaacggtatgcgggtggcgcattatttcccgattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99666" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="807" r_length="398" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E597673" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAA-GCGGTGACATATGCGTCGGAGAACGGCTATAC-GGCGGCGCATTATTTACCGATTATTC</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATGGGAGTGAGAAATACAATCAAGGCGGTGACATATGCGTCGGAGAACGG-TATGCGGGTGGCGCATTATTTCCCGATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693116" ref_strand="+" ref_description="SGN-E693116 [LH_Ea10H18]">
      <seq>cctttaatttctccatctctaccatggctgacgcagctgcacccccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccgcctactagtactgatccagcaagcacgacgccgccgactagtactgatccagtagcagaagatgagaggaaactcgaatatctggatttcgttcaagttgcagcgatctatatgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgaccaaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcagacatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacatcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtcaaggagctatacacaaaatacgagccagtgatcgagaaaaacgcggttttggcatggagatctctgaataagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacctatgcgtcggagaacggctatgccgcggcgcattattttccgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97888" stop="99964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98360" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="176" r_length="171" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98361" i_stop="98781" i_length="421">
            <donor d_prob="0.779" d_score="0.52"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="401" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99664" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="796" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E693116" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98360"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTAT</genome_strand>
        <mrna_strand>AATTTCTCCATCTCTACCATGGCTGACGCAGCTGCACCCCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCGCCTACTAGTACTGATCCAGCAAGCAC-GACGCCGCCGA-CTAGTACTGAT-CCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCGAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATATGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCAAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACATCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAACGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACCTATGCGTCGGAGAACGGCTATGCCGCGGCGCATTATTTTCCGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579901" ref_strand="+" ref_description="SGN-E579901 [87035]">
      <seq>aactccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgaggatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccaggtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggcagtgagacatacaatcaagcgggtgacatatgcgtcggagaacggctatgcggtggcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="183" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="411" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99649" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="795" r_length="384" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E579901" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGA-GATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCA-GTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGG-AGTGAGAAATACAATCAAGC-GGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGCAGTGAGACATACAATCAAGCGGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596985" ref_strand="+" ref_description="SGN-E596985 [40478]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatgggcgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatgggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99599" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="740" r_length="331" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E596985" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATG-GAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGGCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597108" ref_strand="+" ref_description="SGN-E597108 [40605]">
      <seq>tccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagaatttggtgccgacggcggcttattggagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="180" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="408" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99595" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="734" r_length="326" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E597108" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGAATTTGGTGCCGACGGCGGCTTATTGGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579900" ref_strand="+" ref_description="SGN-E579900 [87034]">
      <seq>caactccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttcccctcaagtggctcagattttggtgccgacggcggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="184" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="412" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99586" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="730" r_length="318" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E579900" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTT-CCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599414" ref_strand="+" ref_description="SGN-E599414 [52402]">
      <seq>ttacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaacatgcggttatggcatggcgatctctgaacaagcttcctttgttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="176" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="404" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99550" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="685" r_length="281" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E599414" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCC</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAACATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563211" ref_strand="+" ref_description="SGN-E563211 [2382]">
      <seq>caaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="173" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="401" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99530" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="661" r_length="260" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E563211" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTG</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCT-AAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560476" ref_strand="+" ref_description="SGN-E560476 [20136]">
      <seq>tgcaaagggcttagtttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcatcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaaccccacagtgaaggagctatacgcaaaatacgagccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97888" stop="99792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="174" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="402" r_length="228" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99492" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="626" r_length="224" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E560476" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAA-CCCACAGTCAAGGAGCTATACACAAAATACGAGCCAG</genome_strand>
        <mrna_strand>AGTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCATCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585831" ref_strand="+" ref_description="SGN-E585831 [68295]">
      <seq>aacggcacgaggctccattgtgcttagttttctccatctctcccccatctatatcatggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcatgcacgacgccgcctactagtactgatccagcaagtcgacgacgccgtcgctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatccggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97887" stop="99785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="199" r_length="162" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98426" i_length="79">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98427" g_stop="98466" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="236" r_length="37" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98467" i_stop="98781" i_length="315">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="461" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99270" g_stop="99485" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="677" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E585831" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98427" e_stop="98466"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATAC</genome_strand>
        <mrna_strand>CTCTCCCCCATCTATATCATGGCCGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACCGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCATGCACGACGCCGCCTACTAGTACTGATCCAGCAAGTCGA...............................................................................CGACGCCGTCGCTAC-TAGT-ACTGATCCA-GCTGATCCA...........................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATCCGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567528" ref_strand="+" ref_description="SGN-E567528 [11667]">
      <seq>gtacaactccattgtgcttagttttctccatctctaccatggacgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaaaccacagtgaggagctatacgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97866" stop="99781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="182" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="410" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99481" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="621" r_length="211" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E567528" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGACGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAAACCACAGT-GAGGAGCTATACGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566895" ref_strand="+" ref_description="SGN-E566895 [10937]">
      <seq>caactccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtactaaaacactctacacaaaagtacgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="184" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="412" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99457" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="600" r_length="188" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E566895" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACAC-AAAGTACGAACC</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTA-CTAAAACACTCTACACAAAAGTACGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568571" ref_strand="+" ref_description="SGN-E568571 [12874]">
      <seq>tacaactccattacaaagggcttagttttctccatctctaccatggccgacgcaggtgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="186" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="414" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="595" r_length="181" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E568571" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGT</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGGTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566029" ref_strand="+" ref_description="SGN-E566029 [4468]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccgggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctgaaaccactctacacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99449" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="591" r_length="182" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E566029" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCC-GGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCT-AAAACACTCTACACAAAG</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTGAAACCACTCTACACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567810" ref_strand="+" ref_description="SGN-E567810 [11994]">
      <seq>ccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccagctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattaggctcgagatctcgccggcgaggtacagcacgatggccttagtggacaacagcaagcaacgtagcttaaacactcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="179" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="407" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99442" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="583" r_length="176" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E567810" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTA-GCTCGAGATCTCGCCGGCGAGGTACAGCACGATGG-CTTAGTGGAC-ACAGCGAGCAACGTAGCTAAAACACTCTA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCAGCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCCTTAGTGGACAACAGCAAGCAACGTAGCTTAAACACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599434" ref_strand="+" ref_description="SGN-E599434 [52422]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99369" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="509" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E599434" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAG</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560391" ref_strand="+" ref_description="SGN-E560391 [20037]">
      <seq>ctccattacaaagggcttagttttctccatctctaccatggccgacgcaaatgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgggcttcctctactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97881" stop="99605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98186" g_stop="98347" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="181" r_length="162" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="409" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99318" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="460" r_length="51" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E560391" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98186" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGT-GCCTT-CTCTACTAA</genome_strand>
        <mrna_strand>GTTTTCTCCATCTCTACCATGGCCGACGCAAATGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGGGCTTCCTCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600301" ref_strand="+" ref_description="SGN-E600301 [53309]">
      <seq>tctccatctctaccatggccgacgcagctgcaacgccacctactgatccagcaagcacggcgccaccagctagtactgatccagcaagcacggcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97890" stop="99925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98190" g_stop="98347" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="386" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99625" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="742" r_length="356" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E600301" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98190" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATG---AGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTC</genome_strand>
        <mrna_strand>TCTCCATCTCTACCATGGCCGACGCAGCTGCAACGCCACCTACTGATCCAGCAAGCACGGCGCCACCAGCTAGTACTGATCCAGCAAGCACGGCGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603150" ref_strand="+" ref_description="SGN-E603150 [56232]">
      <seq>gttttctccatctctcccccatctctaccatggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccaggtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgaacgtatgcgtcgggagaacgggctaatgcggtggcgcattatttcccgaattattcccggcagaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97887" stop="99969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="206" r_length="131" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="431" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99681" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="848" r_length="417" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E603150" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCA-GTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTG-ACATATGCGTC-GGAGAAC-GGCT-ATACGGCGGCGCATTATTTACCG-ATTATTCCCGTAGAGAGGATCG</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGAACGTATGCGTCGGGAGAACGGGCTAATGCGGTGGCGCATTATTTCCCGAATTATTCCCG-GCAGAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578462" ref_strand="+" ref_description="SGN-E578462 [85579]">
      <seq>ctaccatggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgcccgacggctgcttattggagtgagaaatacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97899" stop="99907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="182" r_length="131" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="407" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99607" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="746" r_length="339" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E578462" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTG-CCGACGGCTGCTTATTGGAGTGAGAAATACAATCA</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCCGACGGCTGCTTATTGGAGTGAGAAATACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454853" ref_strand="+" ref_description="SGN-E454853 [cSTS-24-H11]">
      <seq>tccatctctcccccatctctaccatggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97887" stop="99853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="200" r_length="131" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="425" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99553" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="709" r_length="284" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E454853" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCA</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597298" ref_strand="+" ref_description="SGN-E597298 [40799]">
      <seq>cccccatctctaccatggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97891" stop="99839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="191" r_length="131" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="416" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99539" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="686" r_length="270" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E597298" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTT</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449182" ref_strand="+" ref_description="SGN-E449182 [cSTS-5-L5]">
      <seq>ccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccaggaagcacgaccccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcaaacttgatgacagaagttgaaagccatgtgccttctctactaaaacaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97908" stop="99838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="173" r_length="131" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="398" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99538" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="667" r_length="269" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E449182" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCT</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGGAAGCACGACCCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAAACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAACAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584616" ref_strand="+" ref_description="SGN-E584616 [10443]">
      <seq>ggatcccccgggctgcaggctgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctnaaacactctacacaaagtacgaacccacagtgaaggagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97932" stop="99774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="135" r_length="131" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="360" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99474" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="565" r_length="205" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E584616" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTAT</genome_strand>
        <mrna_strand>CCCCCGGGCTGCAGGCTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTNAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446592" ref_strand="+" ref_description="SGN-E446592 [cSTA-22-G23]">
      <seq>catggccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaataccggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97903" stop="99763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="178" r_length="131" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="404" r_length="226" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99463" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="598" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E446592" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATA-CGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGT</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACCGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449026" ref_strand="+" ref_description="SGN-E449026 [cSTS-5-K15]">
      <seq>ccgacgcagctgcaacgccgcctactgatccagcaagcaccgcgccacctgctagtactgatccagcaagcacgacgccacctactagtactgatccaggaagcacgaccccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcaaacttgatgacagaagttgaaagccatgtgccttctctactaaaacaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97908" stop="99761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="98347" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="173" r_length="131" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="398" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99461" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="590" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E449026" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACA</genome_strand>
        <mrna_strand>CGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTACTAGTACTGATCCAGGAAGCACGACCCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAAACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAACAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719628" ref_strand="+" ref_description="SGN-E719628 [FC08BF08]">
      <seq>gcaacgccgcctactgatccagcaagcacggcgccacctgctacgactgatccagcaagcacgacgccgcctgctagtactgatccagcaaacacgacgccgcctactagtactgatccagctgatccagtaccaaaagatgagaggaaacttaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaaaaaaactccggtccgttgaaacctggtgtacaggccgtataagccactgttaaaactgttatcggaccggtttatgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggttgcatacttgatgacaaaagttgaaagccatgtgccttctctactaaagcaaacatcatctaaagctctgttaatagctcagaaggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97919" stop="99661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98219" g_stop="98347" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="354" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99361" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="446" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E719628" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98219" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCC</genome_strand>
        <mrna_strand>GCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAAAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTATAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCATACTTGATGACAAAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAAACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599891" ref_strand="+" ref_description="SGN-E599891 [52889]">
      <seq>cctgctagtactgatccagcaagcacgacgccacctgctagtactgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97930" stop="99669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98222" g_stop="98347" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="351" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99369" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E599891" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98222" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAG</genome_strand>
        <mrna_strand>CCTGCTAGTACTGATCCAGCAAGCACGACGCCACCTGCTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603888" ref_strand="+" ref_description="SGN-E603888 [67077]">
      <seq>agtactgatccagcaagcacgaccccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagaaaactccggcccgttgaaatctggtgtgcaggccgtagaagccactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggtttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggcagtgagaaatacaatcaagcggtgacatatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97964" stop="99924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98261" g_stop="98347" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="312" r_length="225" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99624" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="668" r_length="356" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E603888" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98261" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGG-AGTGAGAAATACAATCAAGCGGTGACATATGCGT</genome_strand>
        <mrna_strand>AGTACTGATCCAGCAAGCACGACCCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAAAACTCCGGCCCGTTGAAATCTGGTGTGCAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGTTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGCAGTGAGAAATACAATCAAGCGGTGACATATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599109" ref_strand="+" ref_description="SGN-E599109 [52089]">
      <seq>ctgatccagcaagcacgacgccgcctactagtactgatccagcaagcacgacgccgcctactagtactgatccagctgatccagtagcagaagatgagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtatgaatacggcaaagaaaactccggcccgttgaaacctggtgtacaggccgtagaagtcactgttaaaactgttatcggaccggtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttcaccttctttctccaaaatgaattttgcccatactgtccacaccatacttattttgcagcttgaaagtttgctggaattgagaacatttagaaattgtcttctccaacgaattgaaatccttgatctagctcaattagacgaatgagccataaaaatggatgtggacacatatacacatgaaattcacataaatgtggtaaacttttgaactcgaatttcagtggcaaggatttgaaagtttgaatctatgcaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtaagctaagaacactctagcacaaagtacgaaacccacagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97965" stop="99766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98265" g_stop="98347" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99466" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="766" r_length="683" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E599109" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98265" e_stop="98347"/>
          <exon e_start="98782" e_stop="99466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGC-TGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTG-CATGGACATGCACAT-GATA-AT-T-CAC-TAACATAGAAACGAATGTTGTAAAC-TTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGT-AGCTAA-AACACTCTA-CACAAAGTACG-AACCCACAGTCAA</genome_strand>
        <mrna_strand>CTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCAAGCACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGATGAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGTCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTGCCCATACTGTCCACACCATACTTATTTTGCAGCTTGAAAGTTTGCTGGAATT--G-A-G-A-----A---CATTTAGAAATTGTCTTCTCCAACGAATTGAAATCCTTGATCTAGCTCAAT-TAGACGAATGAGCCATAAAAATGGATGTGGACACATATACACATGAAATTCACATAAATGTGGTAAACTTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAAGCTAAGAACACTCTAGCACAAAGTACGAAACCCACAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560048" ref_strand="+" ref_description="SGN-E560048 [19641]">
      <seq>ctgatccagcaagcacgagccagctactatactgatccactgatccagtacaaagatgatcaaggaaactcaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="97965" stop="99754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98298" g_stop="98347" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="271" r_length="224" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99454" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="456" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E560048" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98298" e_stop="98347"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTA-GCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGA</genome_strand>
        <mrna_strand>CTGATCCAGCAAGCACGA-GCCAGCTACTA-TACTGATCCA-CTGATCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGATGATCA-AGGAAAC-TCAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570233" ref_strand="+" ref_description="SGN-E570233 [14785]">
      <seq>gcacgacgccacctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatcttctgaacaagccttccttttgttccctcaagtggctcagattttggtgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98011" stop="99876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98310" g_stop="98351" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98352" i_stop="98781" i_length="430">
            <donor d_prob="0.995" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="266" r_length="225" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99576" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="576" r_length="310" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E570233" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98310" e_stop="98351"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATC-TCTGAATAAG-CTTCC-TTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGA</genome_strand>
        <mrna_strand>GCACGACGCCACCTACTAGTACTGATCCAGCTGATCCAGT-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTTCTGAACAAGCCTTCCTTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590897" ref_strand="+" ref_description="SGN-E590897 [44693]">
      <seq>cctactagtactgatccagctgatccagtagcagaagatgatcagaggaaactcaaatatctggatttcgttcaagttgcagcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98021" stop="99969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98321" g_stop="98351" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98352" i_stop="98781" i_length="430">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98782" g_stop="99006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="255" r_length="225" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99270" g_stop="99669" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="655" r_length="400" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E590897" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98321" e_stop="98351"/>
          <exon e_start="98782" e_stop="99006"/>
          <exon e_start="99270" e_stop="99669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAATGTCTTCTACGTTTATCATGATATTACAGTTAAATCAATTTTAATTTTCAAACACACACCGTTGTAGCGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACATATTAGATCTAAGTTGTTCAATTACTCAATTTAATTGCCAGAATGAATTGTTATCTTCTTATTTTGAGGTGTTAAATTAGGAATGAGTTGTTGTGCAATGCCTTCATGGTTGCCAATTTCATCTTCGCAATACATATGGTCACTCGACTGATAAAAAATATATCGAGAAAGAGTAGTTAGATTTGATTAAATGCATTGACAGGTAGAATACTAGTATAATTTGTTGAATTTAATTCGAGATGTGTTTTCTCAACATAGGTGAGATTCAGAATTTTTGAGTTTTAAATCTGTACCTGATTTGTGTTTATAATTGAAGGTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCG</genome_strand>
        <mrna_strand>CCTACTAGTACTGATCCAGCTGATCCAGT-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGATGATCAGAGGAAACTCAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603240" ref_strand="-" ref_description="SGN-E603240 [56325]">
      <seq>atctggatttcgttcaagttgcagcgatctatggtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98510" stop="100177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98810" g_stop="99006" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99877" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="804" r_length="606" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E603240" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603240" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98810" e_stop="99006"/>
          <exon e_start="99270" e_stop="99877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGATTTCGTTCAAGTTGCAGCGATCTAT-GTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGC</genome_strand>
        <mrna_strand>ATCTGGATTTCGTTCAAGTTGCAGCGATCTATGGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570476" ref_strand="+" ref_description="SGN-E570476 [15066]">
      <seq>agcgatctatgtgattgtttgcttctcaactttgtacgaatacggcaaagagaactccggcccgttgaaacctggtgtacaggccgtaaaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98532" stop="99302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98832" g_stop="99002" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E570476" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98832" e_stop="99002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCT</genome_strand>
        <mrna_strand>AGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCGGCCCGTTGAAACCTGGTGTACAGGCCGTAAAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601594" ref_strand="-" ref_description="SGN-E601594 [54636]">
      <seq>tgtttgcttctcaactttgtacgaatacggcaaagagaactcccggcccgttgaaacctggtgttacagcccgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98547" stop="100173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98847" g_stop="99006" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99874" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="765" r_length="603" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E601594" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98847" e_stop="99006"/>
          <exon e_start="99270" e_stop="99874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACT-CCGGTCCGTTGAAACCTGGTG-TACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTG</genome_strand>
        <mrna_strand>TGTTTGCTTCTCAACTTTGTACGAATACGGCAAAGAGAACTCCCGGCCCGTTGAAACCTGGTGTTACAGCCCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602137" ref_strand="-" ref_description="SGN-E602137 [55193]">
      <seq>tccggcccgttgaaacctggtgtacagcgcgtagaagccactgttaaaactgttattggaccggtttacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcgaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaacgggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggcnccaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98587" stop="100169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98887" g_stop="99006" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99869" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="719" r_length="599" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E602137" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602137" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98887" e_stop="99006"/>
          <exon e_start="99270" e_stop="99869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGC-CGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATA</genome_strand>
        <mrna_strand>TCCGGCCCGTTGAAACCTGGTGTACAGCGCGTAGAAGCCACTGTTAAAACTGTTATTGGACCGGTTTACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCGAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAACGGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCNCCAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601490" ref_strand="+" ref_description="SGN-E601490 [54530]">
      <seq>gtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98650" stop="100187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98950" g_stop="99006" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99895" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="681" r_length="624" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E601490" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98950" e_stop="99006"/>
          <exon e_start="99270" e_stop="99895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTA</genome_strand>
        <mrna_strand>GTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601489" ref_strand="+" ref_description="SGN-E601489 [54529]">
      <seq>gtttatgagaagttccacaacgttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98650" stop="100187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98950" g_stop="99006" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99894" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="680" r_length="623" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E601489" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98950" e_stop="99006"/>
          <exon e_start="99270" e_stop="99894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTT</genome_strand>
        <mrna_strand>GTTTATGAGAAGTTCCACAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559963" ref_strand="-" ref_description="SGN-E559963 [19542]">
      <seq>tacgagaagttccataacgttcctttcaatctcctcaagttcatcgacctaaaggtggcagacctggtgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggccaaggggttaaaacttggttatgtttgtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98653" stop="100094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98953" g_stop="99006" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99848" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="629" r_length="575" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E559963" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98953" e_stop="99006"/>
          <exon e_start="99270" e_stop="99848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGG</genome_strand>
        <mrna_strand>TACGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTGGCAGACCTGGTGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAA-AACTTGG-TTATGTTTGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622676" ref_strand="+" ref_description="SGN-E622676 [73046]">
      <seq>gttcctttcaatctcctcaagttcatcgacctaaaggttgcagacttgatgacagaagttgaaagccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaattccttaatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98671" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98971" g_stop="99006" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99270" g_stop="99902" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="667" r_length="631" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E622676" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98971" e_stop="99006"/>
          <exon e_start="99270" e_stop="99902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATT</genome_strand>
        <mrna_strand>GTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG.......................................................................................................................................................................................................................................................................GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAAATTCCTTAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596375" ref_strand="+" ref_description="SGN-E596375 [39668]">
      <seq>gccatgtgccttctctactaaagcaggcatcatctaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaaaaaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="98998" stop="100187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99298" g_stop="99887" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99888" i_stop="99975" i_length="88">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.172" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99976" g_stop="99989" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="602" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E596375" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99298" e_stop="99887"/>
          <exon e_start="99976" e_stop="99989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATCCTAAATCACCAAATTTAAATTCTTGAACATATCATATTGTATCAACTTTTAATCAAGCAGGTGAAACAAAA</genome_strand>
        <mrna_strand>GCCATGTGCCTTCTCTACTAAAGCAGGCATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAA........................................................................................AAAAAAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584344" ref_strand="-" ref_description="SGN-E584344 [10168]">
      <seq>catcatccaaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaaaaaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99025" stop="115035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99325" g_stop="99884" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99885" i_stop="99978" i_length="94">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99979" g_stop="100011" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="591" r_length="33" r_score="0.576"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E584344" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584344" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99325" e_stop="99884"/>
          <exon e_start="99979" e_stop="100011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATCCTAAATCACCAAATTTAAATTCTTGAACATATCATATTGTATCAACTTTTAATCAAGCAGGTGAAACAAAATACAAGAATAAAGAGGTTTTAG</genome_strand>
        <mrna_strand>CATCATCCAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCT..............................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600080" ref_strand="+" ref_description="SGN-E600080 [53082]">
      <seq>taaagctctgttaatagctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcgagcaacgtagctaaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaattccttaatatattgtattttaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99032" stop="100213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99332" g_stop="99918" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E600080" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99332" e_stop="99918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</genome_strand>
        <mrna_strand>TAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAAATTCCTTAATATATTGTATTT--TAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580036" ref_strand="+" ref_description="SGN-E580036 [5279]">
      <seq>ctcagaaggctccagaattagctcgagatctcgccggcgaggtacagcacgatggcttagtggacacagcaagcaacgtagctgaaacactctacacaaagtacgaacccacagtgaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttatggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggcggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccggtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcgggagaacgagcagcccgtttccttggaccgacggcactgttgctccggcgcaatgaccattttaacattactgtactggaggttgggcccattgggcttaatgggccaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99049" stop="100094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99349" g_stop="99821" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E580036" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99349" e_stop="99821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCC-GTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGC-TGAAAACGAGCAGTCCGTTCCCTT-GACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTT-ACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAG</genome_strand>
        <mrna_strand>CTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCAAGCAACGTAGCTGAAACACTCTACACAAAGTACGAACCCACAGTGAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTATGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCGGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGGAGAACGAGCAGCCCGTTTCCTTGGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTAACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599069" ref_strand="+" ref_description="SGN-E599069 [52049]">
      <seq>tttaactttggtgatttagaataattattaaaatacagtatattaaggaatttgagaaatggcttacgatataaagatgaacaattactaccgacaaacataaaccaagttattaacccgacggcccattaagcccaatgggcccaacccccagtacagtaatgtaaaatggtcattgcgccggagcaacagtgccgtcggtcaaggaaacgggctgctcgttctccgcggcggcgccgccttcaaacaccttcgcgatcttctctacgggaataatcgggaaataatgcgccaccgcatagccgttctccgacgcatatgtcaccgcttgattgtatttctcactccaataagccgccgtcggcaccaaaatctgagccacttgagggaacaaaggaagcttgttcagagatcgccatgccataaccgcatttttctcggccactggctcgtattttgcgtatagctccttcactgtgggttcgtactttgtgtagagtgttttagctacgttgctcgctgtgtccactaaaccatcgtgctgtacctcgccggcgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="100237" stop="99076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99937" g_stop="99376" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E599069" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99937" e_stop="99376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATTTGGTGATTTAGGATAATTACT-AAATACAATATATTAAGGAACTTAAGAAGTGGCTCACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</genome_strand>
        <mrna_strand>TTTAACTTTGGTGATTTAGAATAATTATTAAAATACAGTATATTAAGGAATTTGAGAAATGGCTTACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCCGACGGCCCATTAAG--CCCAATGGGCCCAACCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGAAACGGGCTGCTCGTTCTCCGCGGCGGCGCCGCCTTCAAACACCTTCGCGATCTTCTCTACGGGAATAATCGGGAAATAATGCGCCACCGCATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCCGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTGTTCAGAGATCGCCATGCCATAACCGCATTTTTCTCGGCCACTGGCTCGTATTTTGCGTATAGCTCCTTCACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAACCATCGTGCTGTACCTCGCCGGCGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595678" ref_strand="+" ref_description="SGN-E595678 [38955]">
      <seq>tttttgatataaagatgaacaattactaccgacaaacataaaccaagttattaaccccttggcccattaagcccaatgggcccaaacctcagtacagtaatgtaaaatggtcattgcgccggagcaacagtaccgtcggtcaaggaaacggactgctcgttctccgcggtggtgccgccttcaaacaccttcgcgatcttctctgcgggaataatcgggaaataatgcgccaccgcatagccgttctccgacgcatacgtcaccgcttgattgtatttctcactccaataagcagccgtcggcaccaaaatctgagccacttgagggaacaaaggaagcttgttcagagatcgccatgccaaaaccgcatttttctcggccactggctcgtattttgcgtatagctccttcactgtgggttcgtactttgtgtagagtgttttagctacgttgctcgctgtgtccactaagccatcgtgctgtacctcgccggcgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="100171" stop="99076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99876" g_stop="99376" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E595678" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99876" e_stop="99376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</genome_strand>
        <mrna_strand>TTTTTGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCCCTTGGCCCATTAAG--CCCAATGGGCCCAAACCTCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTACCGTCGGTCAAGGAAACGGACTGCTCGTTCTCCGCGGTGGTGCCGCCTTCAAACACCTTCGCGATCTTCTCTGCGGGAATAATCGGGAAATAATGCGCCACCGCATAGCCGTTCTCCGACGCATACGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTGTTCAGAGATCGCCATGCCAAAACCGCATTTTTCTCGGCCACTGGCTCGTATTTTGCGTATAGCTCCTTCACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602345" ref_strand="+" ref_description="SGN-E602345 [55323]">
      <seq>caattactaccgacaaacataaaccaagttattaaccccttggcccattaagcccaatgggcccaacctccagtacagtaatgtaaaatggtcattgcgccggagcaacagtgccgtcggtcaaggaaacgggctgctcgttctccgcggcggtgccgccttcaaacaccttcgcgatcttctctacgggaataatcgggaaataatgcgccaccgcatagccgttctccgacgcatatgtcaccgcttgattgtatttctcactccaataagccgccgtcggcaccaaaatctgagccacttgagggaacaaaggaagcttgttcagagatcgccatgccataaccgcatttttctcggccactggctcgtattttgcgtatagctccttcactgtgggttcgtactttgtgtagagtgttttagctacgttgcttgctgtgtccactaagccatcgtgctgtacctcgccggcgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="100157" stop="99076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99857" g_stop="99376" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E602345" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99857" e_stop="99376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</genome_strand>
        <mrna_strand>CAATTACTACCGACAAACATAAACCAAGTTATTAACCCCTTGGCCCATTAAG--CCCAATGGGCCCAACCTCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGAAACGGGCTGCTCGTTCTCCGCGGCGGTGCCGCCTTCAAACACCTTCGCGATCTTCTCTACGGGAATAATCGGGAAATAATGCGCCACCGCATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCCGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTGTTCAGAGATCGCCATGCCATAACCGCATTTTTCTCGGCCACTGGCTCGTATTTTGCGTATAGCTCCTTCACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTTGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601344" ref_strand="+" ref_description="SGN-E601344 [54380]">
      <seq>tatgatataaagatgaacaattactaccgacaaacataaaccaagttattaaccccttggcccattaagcccaatgggcccaacctccagtacagtaatgtaaaatggtcattgcgccggagcaacagtgccgtcggtcaaggaaacgggctgctcgttctccgcggcggtgccgccttcaaacaccttcgcgatcttctctacgggaataatcgggaaataatgcgccaccgcatagccgttctccgacgcatatgtcaccgcttgattgtatttctcactccaataagccgccgtcggcaccaaaatctgagccacttgagggaacaaaggaagcttgttcagagatcgccatgccataaccgcatttttctcggccactggctcgtattttgcgtatagctccttcactgtgggttcgtactttgtgtagagtgttttagctacgttgcttgctgtgtccactaagccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="100173" stop="99099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99874" g_stop="99399" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E601344" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99874" e_stop="99399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATC</genome_strand>
        <mrna_strand>TATGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCCCTTGGCCCATTAAG--CCCAATGGGCCCAACCTCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGAAACGGGCTGCTCGTTCTCCGCGGCGGTGCCGCCTTCAAACACCTTCGCGATCTTCTCTACGGGAATAATCGGGAAATAATGCGCCACCGCATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCCGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTGTTCAGAGATCGCCATGCCATAACCGCATTTTTCTCGGCCACTGGCTCGTATTTTGCGTATAGCTCCTTCACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTTGCTGTGTCCACTAAGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594371" ref_strand="+" ref_description="SGN-E594371 [37621]">
      <seq>ctaaaacactctacacaaagtacgaacccacagtgcaaggagctatacgcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccataggggcttaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99130" stop="100088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99430" g_stop="99815" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E594371" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99430" e_stop="99815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACACTCTACACAAAGTACGAACCCACAGT-CAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGC</genome_strand>
        <mrna_strand>CTAAAACACTCTACACAAAGTACGAACCCACAGTGCAAGGAGCTATACGCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT-GAGGTTTGGGCCCATAGGGGCTTAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582622" ref_strand="+" ref_description="SGN-E582622 [8255]">
      <seq>gcaaaatacgagccagtggccgagaaaaatgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99178" stop="100038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99477" g_stop="99738" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E582622" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99477" e_stop="99738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCG</genome_strand>
        <mrna_strand>GCAAAATACGAGCCAGTGGCCGAGAAAAATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587413" ref_strand="+" ref_description="SGN-E587413 [78529]">
      <seq>atgcggttttggcatggcgatctctgaacaagcttcctttgttccctcaagtggctcagattttggtgccgacggctgcttattggagtgagaaatacaatcaagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99205" stop="100187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99505" g_stop="99887" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99888" i_stop="99978" i_length="91">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99979" g_stop="99991" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="394" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E587413" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99505" e_stop="99887"/>
          <exon e_start="99979" e_stop="99991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATCCTAAATCACCAAATTTAAATTCTTGAACATATCATATTGTATCAACTTTTAATCAAGCAGGTGAAACAAAATA</genome_strand>
        <mrna_strand>ATGCGGTTTTGGCATGGCGATCTCTGAACAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAA...........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592677" ref_strand="+" ref_description="SGN-E592677 [35891]">
      <seq>ctcaagtggctcagattttggtgccgacggctgcttattgtagtgagaaatacaatcgagcggtgacgtatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgcagagaagatcgcgaaggtgtttgaaggcggcaccaccgcggagaacgagcagtccgtttccttgaccgacggtactgttgctccggcgcaatgaccattttacattactgtactgaggtttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtctgtcggtagtaattgttcatctttatatcataagccatttctcaaattccttaatatattgtattttaataattacaaaaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99250" stop="100231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99550" g_stop="99909" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="378"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E592677" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99550" e_stop="99909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTA</genome_strand>
        <mrna_strand>CTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGTAGTGAGAAATACAATCGAGCGGTGACGTATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGCAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCACCGCGGAGAACGAGCAGTCCGTTTCCTTGACCGACGGTACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GAGGTTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTCTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAAATTCCTTAATATATTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586613" ref_strand="+" ref_description="SGN-E586613 [75446]">
      <seq>aaaatacaatatattaaggaatttgagaaatggcttatgatataaagatgaacaattactaccgacaaacataaaccaagttattaaccccttggcccattaagcccaatgggcccaaacctcagtacagtaatgtaaaatggtcattgcgccggagcaacagtaccgtcggtcaaggaaacggactgctcgttctccgcggtggtgccgccttcaaacaccttcgcgatcttctctgcgggaataatcgggaaataatgcgccaccgcatagccgttctccgacgcatacgtcaccgcttgattgtatttctcactccaataagcagccgtcggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="100208" stop="99269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99909" g_stop="99569" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E586613" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99909" e_stop="99569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACAATATATTAAGGAACTTAAGAAGTGGCTCACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACC</genome_strand>
        <mrna_strand>AAAATACAATATATTAAGGAATTTGAGAAATGGCTTATGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCCCTTGGCCCATTAAG--CCCAATGGGCCCAAACCTCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTACCGTCGGTCAAGGAAACGGACTGCTCGTTCTCCGCGGTGGTGCCGCCTTCAAACACCTTCGCGATCTTCTCTGCGGGAATAATCGGGAAATAATGCGCCACCGCATAGCCGTTCTCCGACGCATACGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597493" ref_strand="+" ref_description="SGN-E597493 [40998]">
      <seq>ggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcaccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactggaggttgggcccattgggcttaatgggccaaggggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcataagccatttctcaattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99282" stop="100190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99581" g_stop="99887" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99888" i_stop="99978" i_length="91">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99979" g_stop="100003" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="330" r_length="25" r_score="0.680"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E597493" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99581" e_stop="99887"/>
          <exon e_start="99979" e_stop="100003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATCCTAAATCACCAAATTTAAATTCTTGAACATATCATATTGTATCAACTTTTAATCAAGCAGGTGAAACAAAATACAAGAATAAAGA</genome_strand>
        <mrna_strand>GGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCACCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGAGGTTGGGCCCATTGGGCTTAATGGGCCAAGGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCATAAGCCATTTCTCAA...........................................................................................TTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586329" ref_strand="+" ref_description="SGN-E586329 [60383]">
      <seq>cctcgtgccgaattcggcacgaggggcttattggagtgagaaatacaatcaagcggtgacatatgcgtcggagaacggctatgcggtggcgcattatttcccgattattcccgtagagaagatcgcgaaggtgtttgaaggcggcgccgccgcggagaacgagcagcccgtttccttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactgggggttgggcccattgggcttaatgggccgtcgggttaataacttggtttatgtttgtcggtagtaattgttcatctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99267" stop="100169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99582" g_stop="99867" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="309" r_length="284" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99868" i_stop="99978" i_length="111">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99979" g_stop="99989" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="320" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E586329" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99582" e_stop="99867"/>
          <exon e_start="99979" e_stop="99989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATCCTAAATCACCAAATTTAAATTCTTGAACATATCATATTGTATCAACTTTTAATCAAGCAGGTGAAACAAAA</genome_strand>
        <mrna_strand>GCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATGCGGTGGCGCATTATTTCCCGATTATTCCCGTAGAGAAGATCGCGAAGGTGTTTGAAGGCGGCGCCGCCGCGGAGAACGAGCAGCCCGTTTCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGGGGTTGGGCCCATTGGGCTTAATGGGCCGTCGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTA...............................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612530" ref_strand="+" ref_description="SGN-E612530 [62294]">
      <seq>cttgaccgacggcactgttgctccggcgcaatgaccattttacattactgtactgggggttgggcccattgggcttaatgggccgtcgggttaataacttggtttatgtttgtcggtagtaattgttcatctttatatcgtaagccatttctcaaattccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="99431" stop="100200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99731" g_stop="99895" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="164" polyA_stop="180"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E612530" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99731" e_stop="99895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTA</genome_strand>
        <mrna_strand>CTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACT--GGGGGTTGGGCCCATTGGGCTTAATGGGCCGTCGGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTAAGCCATTTCTCAAATTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321451" ref_strand="-" ref_description="SGN-E321451 [cTOB-23-O22]">
      <seq>atttcccaatcggtcaggtgcaatctacattgtttatgtccgtcataaagtggagaggggatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctttctcttgcacttactgctattattccaactgcaattggcatttacaggaagctttggccggatgctggcgagaagtactcaatctactaaatttcatttccatatcagcattgcatttttggttcattagaccttccatgatgacatattgtctttgtcagttcattgaataatgcttctgttaatttcccatctatttaggattcctactgttatgagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatgaagaggtttgtgttgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102425" stop="36060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102125" g_stop="101647" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101646" i_stop="99919" i_length="1728">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.428" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99918" g_stop="99875" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="522" r_length="43" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E321451" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102125" e_stop="101647"/>
          <exon e_start="99918" e_stop="99875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTTATATGCTTCCTACAATGTATTGAACAACTGTGATTCTTTTTCTCATTTAATGTACTTCTATTCAACAACATACATCTTACAAACAAGGGTCCACAAGGCAGAGTTTCCTTGATTGTTGATATTTATTGTTTTATAACATGATATTAATTGAACCGACTGATACTTCTTGAGTGGTGATATTACAAGGTTCAATATTGGAGTAGAATTTGGTTAAGGTCACTAATGGCTTATGCTTGGGCAAGGACATAATAGATGTACTATCTCATAGTAGTAGAAGTATTTGCTTGAAAATTTTTCTTATCGAGTTTGTGAAGTCATTTTTTGATCTCTTTTTGGAGAAAATGATTGTTTTACCCGAGTCGAGAAACAACTCTCTACTCTCACAAGATAGAGATAAGGTCTGCGTACGTAACTATTCTCATATCCTATTTGAGATTACATTGAATATGTTGTTGAGTAAATGTTTGTTTGAGTTGTTTGTTGATTTTCATTTTTGGTGCCAATCTTATCTCAAAAGGTGTTTATGCTGTGTTACATAGAGGACAAGGAAGTAAAGAGGGGGGGGGGGAGGGGGGGGTTGGGTTGAATCTGTCATTTCACTCTTTTGTAAAGCATGAACTTTAGAAAGCATTTAGAATTATGTACGAACTATTGCAAAAATGTTTCAAGTAGAAGTGATAGATATTATCAATGTAAAAATTATACCTTATCATTTTATTTTAAAATGTTACTTCACCATTTTTACCAATTAATCATTCATATTTTAATTTTCTAGATATGCATAGAAGCAATTCATCATTTTTTAGTACGAGTAGATATCATTAGCTATTTGCATATTGTAAGCAAATATGGAGAAACAACTAACGATCATGATGGATCTTGAGTCATTTAAAAAAATGTATATTGTTGCTACTTCTTCGTGTCAGATAAAAATAAAATAGGGTGGTGGTTAGAGAAAATTACGTAATAAAATAAATTTATACTATTTGATTACATATCATAGTTGTAGTTTGCTATTATTATCTTTCGCGACAAACATTGTATATTAATTACATGGGCCGACTTCGAATTTGTATAATTAGTCACGTTTGTATATGTATAATTCGCCAGAATATACAAATACATATGTATAATATACAATTATTTAACCTACATATGTATACAGTCACCTCTCTTCCTAGTCTCGCTCGCCTCTCTCCTCCCTTTTCCAATCTCCTCTCTCCTCTCTCTCCCAATCTCTCTTGCCATATATACAAATACATAGGTATAATATACAAATATCTAACCAATATACATATATAATTCACCTTTCTCCCACTCTTTTCTCCCCTCTCTCGCCTCTCTCGTCACTCTCCTAGTCTCGCTCATCTCTTTTCTTCATATAACATGTAGCTACAAATTATAATTATCAAACTATATCTATGGAGAGTAATTAATTATATTTAAGTGGCTATATGTGAAAATTTCTTCGATTTAAACACGTGAGGCTTAAAAATATGATGGAAATGATCTCGGGACAATGTACAAATATTTTCCTAGACTGATCGAAATCTAATAAACGCACGTCTTATTCAACTTTGTGAAAAGTTACAAAATCAAATCATTTCTTTTGATGTTCTTTACCATCGATACTCCCTAAAACCTCTTTATTCTTGTATTTTGTTTCACCTGCTTGATTAAAAGTTGATACAATATGATATGTTCAAGAATTTAAATTTGGTGATTTAGGATAATTACTAAATACAATATATTAAGGAACTTAAGAAGTGGCT</genome_strand>
        <mrna_strand>ATTTCCCAATCGGTCAGGTGCAATCTACATTGTTTATGTCCGTCATAAAGTGGAGAGGGGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTTTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATTTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTCCATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC-TCAGACTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594359" ref_strand="-" ref_description="SGN-E594359 [37609]">
      <seq>ttttttttttttttttaaagcaacacaaacctcttcatttcatctggcaaaaaagtacattcaatcactcaaaattgacttataactcataacagtaggaatcctaaatagatgggaacaaattaacagaagcattattcaaggaactgacaaagataatatgccatcatataaggtctaatgaaccaaaaatgcaatgctgatatgaaaatgaaatttagtagattgagtaattctcgccagcatccggccaaagcttcctgtagatgccaattgcagttggaataatagcagtaagtgcaagagagagatggtctgaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="66702" stop="102252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101356" g_stop="101362" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101363" i_stop="101637" i_length="275">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.676" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101638" g_stop="101952" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="325" r_length="318" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E594359" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101356" e_stop="101362"/>
          <exon e_start="101638" e_stop="101952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGCAAATACTTCTACTACTATGAGATAGTACATCTATTATGTCCTTGCCCAAGCATAAGCCATTAGTGACCTTAACCAAATTCTACTCCAATATTGAACCTTGTAATATCACCACTCAAGAAGTATCAGTCGGTTCAATTAATATCATGTTATAAAACAATAAATATCAACAATCAAGGAAACTCTGCCTTGTGGACCCTTGTTTGTAAGATGTATGTTGTTGAATAGAAGTACATTAAATGAGAAAAAGAATCACAGTTGTTCAATACATTGTAGGAAGCATATAAAGCAACACAAACCTCTTCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATTGACTTATAACTCATAACAGTAGGAATCCTAAATAGATGGG---AAATTAACAGAAGCATTATTCAATGAACTGACAAAGACAATATGTCATCATGTAAGGTCTAATGAACCAAAAATGCAATGCTGATATGGAAATGAAATTTAGTAGATTGAGTACTTCTCGCCAGCATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCT</genome_strand>
        <mrna_strand>TTTTTTT...................................................................................................................................................................................................................................................................................TTTTTTTTTAAAGCAACACAAACCTCTTCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATTGACTTATAACTCATAACAGTAGGAATCCTAAATAGATGGGAACAAATTAACAGAAGCATTATTCAAGGAACTGACAAAGATAATATGCCATCATATAAGGTCTAATGAACCAAAAATGCAATGCTGATATGAAAATGAAATTTAGTAGATTGAGTAATTCTCGCCAGCATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404100" ref_strand="+" ref_description="SGN-E404100 [PPC-12-L23]">
      <seq>tgcagtctacattgtctatgtccgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgttggcgagaattactcaatctactaaatttcattttcatatcagcattgcatttttggttcattagaccttatatgatggcatattatctttgtcagttcattgaataatgcttctgttaatttcttcccatccatttaggattcctactgttatgagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatgaagaggtttgtgttgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102407" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102107" g_stop="101647" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="476"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E404100" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102107" e_stop="101647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAA--T-TTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</genome_strand>
        <mrna_strand>TGCAGTCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGTTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATTTTTGGTTCATTAGACCTTATATGATGGCATATTATCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCTTCCCATCCATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607756" ref_strand="+" ref_description="SGN-E607756 [23729]">
      <seq>cttgcacttactgctattatccaactgcaattggcatctacaggaagctttggccggatgttggcgagaattactcaatctactaaatttcattttcatatcagcattgcatttttggttcattagaccttatatgatggcatattatctttgtcagttcattgaataatgcttctgttaatttcttcccatccatttaggattcctactgttatgagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatgaagaggtttgtgttgctttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102231" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101931" g_stop="101647" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E607756" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101931" e_stop="101647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAA--T-TTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</genome_strand>
        <mrna_strand>CTTGCACTTACTGCTATTA-TCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGTTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATTTTTGGTTCATTAGACCTTATATGATGGCATATTATCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCTTCCCATCCATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744426" ref_strand="+" ref_description="SGN-E744426 [GI|399645]">
      <seq>ctgcgagaagatctcaatctactaatttcatttccatatcagcattgcatttttggttcattagaccttacatgatgacatattgtctttgtcagttcattgaataatgcttctgttaatttcccatctatttaggattcctactgttatgagttataagtcaattttgagtgattgattgtacttttttgccagatgaaatgaagaggtttgtgttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102170" stop="101347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101870" g_stop="101647" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E744426" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101870" e_stop="101647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</genome_strand>
        <mrna_strand>CT-GCGAGAAGATCTCAATCTACTA-ATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGATTGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428276" ref_strand="+" ref_description="SGN-E428276 [STM-50-C23]">
      <seq>aacaaaacaaatttgtttttagcaacacaatcacactccatttcatctggcaaaaaagtacattcaatcactcaaaattgacttataactcttaacagtaggaatcctaaatggatgggaagaaattaacagaagcattattcaatgaactgacaaagataatatgccatcatataaggtctaatgaaccaaaaatgcaatgctgatatgaaaatgaaatttagtagattgagtaattctcgccaacatccggccaaagcttcctgtagatgccaattgcagttggaataatagcagtaagtgcaagagagagatggtctgaactgcttgtcctcacggttacttgcccactgagcttgttattgattcctgctcgaacagctaccttcgaattgcgtcccacagcgaattgcgccatactgttgaaacctagagccaaatcacctctccactttatgacagacatagacaatgtagactgcacctgaccaattgggaaatctgcctccctcctctgcagttcaaagttcgccccataagctgtgtcactctgagatcgaacagtgccagcactgccaactagaacatattgcttgcctaagatgatctgatcttcaactttaagtccagtaaccatattttcacctagaaatgtaacagaaattccgcaagcagtcttgttcttcttcaaagttttgaatttggtttctcctcggacaatatangcaagttgctttcctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="101344" stop="102668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101651" g_stop="102368" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="744" r_length="722" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E428276" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101651" e_stop="102368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACAAAC-CTCTTCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATTGACTTATAACTCATAACAGTAGGAATCCTAAATAGAT-GG--GAAATTAACAGAAGCATTATTCAATGAACTGACAAAGACAATATGTCATCATGTAAGGTCTAATGAACCAAAAATGCAATGCTGATATGGAAATGAAATTTAGTAGATTGAGTACTTCTCGCCAGCATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGCTACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATCACCTCTCCACTTTATGACGGACATAGACAATGTAGATTGCACCTGACCGATTGGGAAATCTGCCTCCCTCCTCTGCAGTTCAAAGTTAGCCCCATAAGCTGTGTCACTCTGAGATCGAACAGTGCCAGCACTGCCAACTAGAACGTATTGCTTGCCTAAGATGATTTGATCTTCAACTTTAAGTCCAGTGACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTTCTTCTTCAAGCTTTTGAATTTGGTTTCTCCTCGGACAATATAGGCAAGTTGCTTCCCTATGC</genome_strand>
        <mrna_strand>CAACACAATCACACTCCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATTGACTTATAACTCTTAACAGTAGGAATCCTAAATGGATGGGAAGAAATTAACAGAAGCATTATTCAATGAACTGACAAAGATAATATGCCATCATATAAGGTCTAATGAACCAAAAATGCAATGCTGATATGAAAATGAAATTTAGTAGATTGAGTAATTCTCGCCAACATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGCTACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATCACCTCTCCACTTTATGACAGACATAGACAATGTAGACTGCACCTGACCAATTGGGAAATCTGCCTCCCTCCTCTGCAGTTCAAAGTTCGCCCCATAAGCTGTGTCACTCTGAGATCGAACAGTGCCAGCACTGCCAACTAGAACATATTGCTTGCCTAAGATGATCTGATCTTCAACTTTAAGTCCAGTAACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTTCTTCTTCAAAGTTTTGAATTTGGTTTCTCCTCGGACAATATANGCAAGTTGCTTTCCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603217" ref_strand="+" ref_description="SGN-E603217 [56301]">
      <seq>tatggttactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcacaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgctggcgagaattactcaatctactaaatttcattttcatatcagcattgcatttttggttcattagaccttatatgatggcatattatctttgtcagttccttgaataatgcttctgttaatttgttcccatctatttaggattcctactgttatgagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatgaagaggtttgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102562" stop="101351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102262" g_stop="101651" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E603217" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102262" e_stop="101651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAA--T-TTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTG</genome_strand>
        <mrna_strand>TATGGTTACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCACAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATTTTTGGTTCATTAGACCTTATATGATGGCATATTATCTTTGTCAGTTCCTTGAATAATGCTTCTGTTAATTTGTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281062" ref_strand="+" ref_description="SGN-E281062 [cLER-7-P22]">
      <seq>ttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtctatgtccgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgctggcgagaagtactcaatctactaaatttcatttccatatcagcattgcatttttggttcattagaccttacatgatgacatattgtctttgtcagttcattgaataatgcttctgttaatttcccatctatttaggattcctactgttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102449" stop="101416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102149" g_stop="101716" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E281062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102149" e_stop="101716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAG</genome_strand>
        <mrna_strand>TTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560354" ref_strand="+" ref_description="SGN-E560354 [19996]">
      <seq>tgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcagatcatcttaggcaagcaatatgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgttggcgagaattactcaatctactaaatttcattttcatatcagcattgcatttttggttcattagaccttatatgatggcatattatctttgtcagttcattgaataatgcttctgttaatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102598" stop="101446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102298" g_stop="101743" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E560354" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102298" e_stop="101743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCA</genome_strand>
        <mrna_strand>TGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAGATCATCTTAGGCAAGCAATATGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGTTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATTTTTGGTTCATTAGACCTTATATGATGGCATATTATCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710039" ref_strand="+" ref_description="SGN-E710039 [FA54AB04]">
      <seq>gttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgtcctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtctatgtccgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgctggcgagaagtactcaatctactaaatttcatttccatatcagcattgcatttttggttcattagaccttacatgatgacatattgtctttgtcagttcattgaataatgcttctgttaatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102889" stop="101445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102589" g_stop="101745" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E710039" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102589" e_stop="101745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCC</genome_strand>
        <mrna_strand>GTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTCCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427833" ref_strand="+" ref_description="SGN-E427833 [STM-49-M9]">
      <seq>aactgacaaagataatatgccatcatataaggtctaatgaaccaaaaatgcaatgctgatatgaaaatgaaatttagtagattgagtaattctcgccaacatccggccaaagcttcctgtagatgccaattgcagttggaataatagcagtaagtgcaagagagagatggtctgaactgcttgtcctcacggttacttgcccactgagcttgttattgattcctgctcgaacagctaccttcgaattgcgtcccacagcgaattgcgccatactgttgaaacctagagccaaatcacctctccactttatgacagacatagacaatgtagactgcacctgaccaattgggaaatctgcctccctcctctgcagttcaaagttcgccccataagctgtgtcactctgagatcgaacagtgccagcactgccaactagaacgtattgcttgcctaagatgatctgatcttcaactttaagtccagtaaccatattttcacctagaaatgtaacagaaattccgcaagcagtcttgttcttcttcaagtttttgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="101472" stop="102628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101772" g_stop="102328" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E427833" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101772" e_stop="102328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGACAAAGACAATATGTCATCATGTAAGGTCTAATGAACCAAAAATGCAATGCTGATATGGAAATGAAATTTAGTAGATTGAGTACTTCTCGCCAGCATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGCTACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATCACCTCTCCACTTTATGACGGACATAGACAATGTAGATTGCACCTGACCGATTGGGAAATCTGCCTCCCTCCTCTGCAGTTCAAAGTTAGCCCCATAAGCTGTGTCACTCTGAGATCGAACAGTGCCAGCACTGCCAACTAGAACGTATTGCTTGCCTAAGATGATTTGATCTTCAACTTTAAGTCCAGTGACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTTCTTCTTCAAGCTTTTGAATTTG</genome_strand>
        <mrna_strand>AACTGACAAAGATAATATGCCATCATATAAGGTCTAATGAACCAAAAATGCAATGCTGATATGAAAATGAAATTTAGTAGATTGAGTAATTCTCGCCAACATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGCTACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATCACCTCTCCACTTTATGACAGACATAGACAATGTAGACTGCACCTGACCAATTGGGAAATCTGCCTCCCTCCTCTGCAGTTCAAAGTTCGCCCCATAAGCTGTGTCACTCTGAGATCGAACAGTGCCAGCACTGCCAACTAGAACGTATTGCTTGCCTAAGATGATCTGATCTTCAACTTTAAGTCCAGTAACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTTCTTCTTCAAGTTTTTGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604332" ref_strand="+" ref_description="SGN-E604332 [74466]">
      <seq>gagaaaccaaattcaaaaacttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcacaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttgggccggatgctggcgagaattactcaatctactagatttcattttcatatcagcattgcattntgggtncattagaccttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102635" stop="101497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102335" g_stop="101797" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E604332" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102335" e_stop="101797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTT-GGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACA</genome_strand>
        <mrna_strand>GAGAAACCAAATTCAAAAACTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCACAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGGCCGGATGCTGGCGAGAATTACTCAATCTACTAGATTTCATTTTCATATCAGCATTGCATTNTGGGTNCATTAGACCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607502" ref_strand="+" ref_description="SGN-E607502 [23469]">
      <seq>ctgcagttactgtgcaaatcacccaaagataagaaggatttcagtatcaatttggactcttctattgctgccaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcataggaaagcaacttgcctatattgtccgaggagaaaccaaattcaaaaacttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcagatcatcttaggcaagcaatatgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttgcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgttggcgagaattactcaatctactaaatttcattttcatatcagcattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102785" stop="101518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102485" g_stop="101818" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E607502" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102485" e_stop="101818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGTTACTGTGCAAATCA-CCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTT-CAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATT</genome_strand>
        <mrna_strand>CTGCAGTTACTGTGCAAATCACCCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCTATTGCTGCCAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGAAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAACTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAGATCATCTTAGGCAAGCAATATGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTGCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGTTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582467" ref_strand="+" ref_description="SGN-E582467 [8100]">
      <seq>attcaaagcataggaaagcaacttgcctatattgtccgagtagaaaccaaattcaaggaacttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcaaatcatcttagcaagcaatacgttctatttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcatggtgcagtctacattgtctatgtctcgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcacaattcgctgtgggacgcaattcgaagggtagctgttcgagcaggaatcaataacaagctcatgtgggcaagtaaccgtgaggtaccagcagttcagaccatctctctcttggcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgctggcgagaattcactcagtctactagatttcattttcatatcagcattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102675" stop="101518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102375" g_stop="101818" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E582467" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102375" e_stop="101818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAA-AAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCA-GGTGCAATCTACATTGTCTATGTC-CGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAA-GGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCA-GTGGGCAAGTAACCGTGAGG-ACAAGCAGTTCAGACCATCTCTCTCTT-GCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGT-ACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATT</genome_strand>
        <mrna_strand>ATTCAAAGCATAGGAAAGCAACTTGCCTATATTGTCCGAGTAGAAACCAAATTCAAGGAACTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAAATCATCTTA-GCAAGCAATACGTTCTATTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCATGGTGCAGTCTACATTGTCTATGTCTCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCACAATTCGCTGTGGGACGCAATTCGAAGGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCATGTGGGCAAGTAACCGTGAGGTACCAGCAGTTCAGACCATCTCTCTCTTGGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAATTCACTCAGTCTACTAGATTTCATTTTCATATCAGCATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479389" ref_strand="+" ref_description="SGN-E479389 [cSTD-9-P11]">
      <seq>cgatgctggacagcatggttgggaccctgcttgtggcctatgctggtgttaatgtggaaccgagtttaagccattggcaagtcgtttccctgctgcagttacctgtgcaaatcaccaaagataagaaggatttcagtatcaatttggaactcttctattgctgccaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcataggaaagcaacttgcctatattgtccgaggagaaaccaaattcaaaaacttgaagaagaacaagaactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagaacagatcatcttaggcaagcaatatgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggcccggatgttggncgagaattactcaatctactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102872" stop="101545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102575" g_stop="101845" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E479389" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102575" e_stop="101845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTGGACACGCATGGTTGGGATCATGATTGTGG-CTATGATGGTGTTAACGTGGAACAAAGTTT-AGCCATT-GCCAGTCGTTTCCCTGCTGCAGTTA-CTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGG-ACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAG-ACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGG-CCGGATGCTGG-CGAGAAGTACTCAATCTACTAA</genome_strand>
        <mrna_strand>CGATGCTGGACA-GCATGGTTGGGACCCTGCTTGTGGCCTATGCTGGTGTTAATGTGGAACCGAGTTTAAGCCATTGGCAAGTCGTTTCCCTGCTGCAGTTACCTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGAACTCTTCTATTGCTGCCAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGAAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAACTTGAAGAAGAACAAGAACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGAACAGATCATCTTAGGCAAGCAATATGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCCGGATGTTGGNCGAGAATTACTCAATCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428275" ref_strand="+" ref_description="SGN-E428275 [STM-50-C23]">
      <seq>ctggacacgcatggttgggatcatgattgtggctatgatggtgttaatgtggaacagagtttagccattgcaagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttctattgctgccaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcataggaaagcaacttgcctatattgtccgaggagaaaccaaattcaaaaacttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcagatcatcttaggcaagcaatatgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaaactgcattggcatctacaggaagcttttggccggatgntggcgagaattactcaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102870" stop="101549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102570" g_stop="101849" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E428275" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102570" e_stop="101849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCC-AACTGCAATTGGCATCTACAGGAAGC-TTTGGCCGGATGCTGGCGAGAAGTACTCAATCTA</genome_strand>
        <mrna_strand>CTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAATGTGGAACAGAGTTTAGCCATTGCAAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCTATTGCTGCCAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGAAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAACTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAGATCATCTTAGGCAAGCAATATGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAAACTGC-ATTGGCATCTACAGGAAGCTTTTGGCCGGATGNTGGCGAGAATTACTCAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316143" ref_strand="+" ref_description="SGN-E316143 [cTOA-23-N10]">
      <seq>ttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataataatgatttcaatatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatatggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttacgcaagcaatacgttctagttggcagtgctggcactgttcgatctcacagtgacacagcttatggggctaactttgaactgcacacgagggaggcagatttcccaatcgggcaggtgcaatctacattgtctatgtccgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgnaagtagctgttcgagcatgaatcantaacaagctcagtgggcaagtaaccgtgaggacgagcagttcagaccatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102946" stop="101633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102646" g_stop="101933" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E316143" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102646" e_stop="101933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTC</genome_strand>
        <mrna_strand>TTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAATAATGATTTCAATATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATATGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTACGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCACAGTGACACAGCTTATGGGGCTAACTTTGAACTGCACACGAGGGAGGCAGATTTCCCAATCGGGCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGNAAGTAGCTGTTCGAGCATGAATCANTAACAAGCTCAGTGGGCAAGTAACCGTGAGGACGAGCAGTTCAGACCATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316036" ref_strand="+" ref_description="SGN-E316036 [cTOA-23-G24]">
      <seq>ttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtctatgtccgtcataaagtggagaagtgatttggctctangtttncacagtatggcgcaattcgctgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102946" stop="101722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102646" g_stop="102022" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E316036" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102646" e_stop="102022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGA</genome_strand>
        <mrna_strand>TTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAAGTGATTTGGCTCTANGTTTNCACAGTATGGCGCAATTCGCTGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214340" ref_strand="+" ref_description="SGN-E214340 [cLEC-77-E11]">
      <seq>ccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtctatgtccgtcataaagtggagaggtgatttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102955" stop="101757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102655" g_stop="102057" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E214340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102655" e_stop="102057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTC</genome_strand>
        <mrna_strand>CCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709458" ref_strand="+" ref_description="SGN-E709458 [FA52AD09]">
      <seq>ccctacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgtcctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgcctatgtccgtcataaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103120" stop="101774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102822" g_stop="102074" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E709458" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102822" e_stop="102074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCAT-AAAGTG</genome_strand>
        <mrna_strand>CCCTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTCCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGCCTATGTCCGTCATAAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709730" ref_strand="+" ref_description="SGN-E709730 [FA52DH02]">
      <seq>gtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgtcctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103280" stop="101790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102980" g_stop="102090" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="891" r_length="891" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E709730" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102980" e_stop="102090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTA</genome_strand>
        <mrna_strand>GTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTCCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253297" ref_strand="+" ref_description="SGN-E253297 [cLEG-26-B1]">
      <seq>gatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccacgcttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103002" stop="101857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102702" g_stop="102157" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E253297" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102702" e_stop="102157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCAC-CTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGG</genome_strand>
        <mrna_strand>GATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACGCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553479" ref_strand="+" ref_description="SGN-E553479 [cTSC-1-D8]">
      <seq>caagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccctacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcnaaagcttgaaaaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaagcaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103421" stop="101914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103121" g_stop="102214" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E553479" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103121" e_stop="102214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAA</genome_strand>
        <mrna_strand>CAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCNAAAGCTTGAAAAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAAGCAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704040" ref_strand="+" ref_description="SGN-E704040 [FA23AG07]">
      <seq>aattactactattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccctacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103463" stop="102014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103163" g_stop="102314" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="850" r_length="850" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E704040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103163" e_stop="102314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTT</genome_strand>
        <mrna_strand>AATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213650" ref_strand="+" ref_description="SGN-E213650 [cLEC-76-K8]">
      <seq>gctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103005" stop="102043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102705" g_stop="102343" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E213650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102705" e_stop="102343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATT</genome_strand>
        <mrna_strand>GCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583060" ref_strand="+" ref_description="SGN-E583060 [8693]">
      <seq>ccgtaagctctttggtttccgcacacgctcaccacctcttccgtacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtacgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactatagggtcaagctccttcagaagaaacagttgagagaagagttaaaaagaatgaaagagatgaaaagtaagggaaaagaggcggcaattgactatggttatgcagaggaagaagctgatgcaggtgcagcagctcctgtagcagttcccctccctgacatggccctcccaccttcttttgatagtgataatcccgcctacaggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaatgtggaacagagtttagccattgcaagtcgtttcctgctgcagttactgtgcaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103384" stop="102163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103084" g_stop="102463" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E583060" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103084" e_stop="102463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACC</genome_strand>
        <mrna_strand>CCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTACGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTATAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGAGTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCGGCAATTGACTATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCTGTAGCAGTTCCCCTCCCTGACATGGCCCTCCCACCTTCTTTTGATAGTGATAATCCCGCCTACAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAATGTGGAACAGAGTTTAGCCATTGCAAGTCGTTT-CCTGCTGCAGTTACTGTGCAAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295259" ref_strand="+" ref_description="SGN-E295259 [cLET-20-O14]">
      <seq>gaaaagaggctttttcgacattggctatgcagaggaagaagctgatgcaggtgcagcagttcccgtagcaaatccacttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccggtttttggagcccacatcacagctccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103031" stop="102230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102530" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E295259" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGG</genome_strand>
        <mrna_strand>GAAAAGAGGCT-TTTTCGACATTGGCTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGTTCCCGTAGCAAATCCACTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGGTTTTTGGAGCCCACATCACAGCTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555297" ref_strand="+" ref_description="SGN-E555297 [cTSC-1-D14]">
      <seq>acgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttctttggagcccccatcacagttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103315" stop="102283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103015" g_stop="102583" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E555297" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103015" e_stop="102583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTC-TTGGAGCCCACATCACAGTTCCTT</genome_strand>
        <mrna_strand>ACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTTGGAGCCCCCATCACAGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477842" ref_strand="+" ref_description="SGN-E477842 [cSTD-1-N10]">
      <seq>gtttgttactcaaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaaccatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccgtacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtacgacctgcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactatagggtcaagctccttcagaagaaacagttgagagaagagttaaaaagaatgaaagagatgaaaagtaagggaaaagaggcggcaattgactatggttatgcagaggaagaagctgatgcaagtgcagcagctccgtnagcagttcccctccctgacatggcccctccaccttctttngatagtgataatcccgcttacaggtaccgcttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103639" stop="102303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103339" g_stop="102603" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E477842" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103339" e_stop="102603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGG</genome_strand>
        <mrna_strand>GTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAACCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTACGACCTGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTATAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGAGTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCGGCAATTGACTATGGTTATGCAGAGGAAGAAGCTGATGCAAGTGCAGCAGCTCCGTNAGCAGTTCCCCTCCCTGACATGGCCCCTCCACCTTCTTTNGATAGTGATAATCCCGCTTACAGGTACCGCTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427832" ref_strand="+" ref_description="SGN-E427832 [STM-49-M9]">
      <seq>tttttgttactcaaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaaccatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccgtacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtacgacctgcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactatagggtcaagctccttcagaagaaacagttgagagaagagttaaaaagaatggaagagnatgaaagtaaggggaaagaggcggcaattgactatggttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103640" stop="102416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103340" g_stop="102716" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E427832" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103340" e_stop="102716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGC</genome_strand>
        <mrna_strand>TTTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAACCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTACGACCTGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTATAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGAGTTAAAAAGAATGGAAGAGNATGAAAGTAAGGGGAAAGAGGCGGCAATTGACTATGGTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367140" ref_strand="+" ref_description="SGN-E367140 [cLPT-5-L5]">
      <seq>cgatttactaatgatgagtccaagtctgatgaatcccgtctctctggtagaaaatcatccatcgtgcaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactactattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccctacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactatagggtcaagctccttcagaagaaacagttgagagaagagttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103585" stop="102417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="102717" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E367140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="102717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATG</genome_strand>
        <mrna_strand>CGATTTACTAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCGTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTATAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGAGTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417028" ref_strand="+" ref_description="SGN-E417028 [STM-24-K20]">
      <seq>ctggcctcaagtcctctgcgatggaaccgggtttcaatcgcagtgtcttgtcttcagtaaagaagttgactaagaagaacccccctgatatcttcctctatgtcgatcgactggatgcccaaactagagatctcaatgatcttcctatgctgaagactatcacaagttgtcttggtccttcaatatggcgaagtgccatagtcaccctcacacatggagcttctgcacctccagatggaccttctggatcccctttaagttatgaggtgtttgttactcaaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaaccatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccgtacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtacgacctgcttcctcccttcaagcctcttcggaaggctcagcttgctaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103907" stop="102559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103607" g_stop="102859" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E417028" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103607" e_stop="102859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTGAAGACTATCACAAGTTGTCTTGGCCCTTCAATATGGCGAAGCGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTC</genome_strand>
        <mrna_strand>CTGGCCTCAAGTCCTCTGCGATGGAACCGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAACCCCCCTGATATCTTCCTCTATGTCGATCGACTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTGAAGACTATCACAAGTTGTCTTGGTCCTTCAATATGGCGAAGTGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAACCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTACGACCTGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458374" ref_strand="+" ref_description="SGN-E458374 [cPRO-5-D13]">
      <seq>aaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaaccatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccgtacatgctttcttcaatggtgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgacccagaagaagaagatgagtacgacctgcttcctcccttcaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103628" stop="102585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103328" g_stop="102885" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E458374" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103328" e_stop="102885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTC</genome_strand>
        <mrna_strand>AAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAACCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCGTACATGCTTTCTTCAATGGTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCCAGAAGAAGAAGATGAGTACGACCTGCTTCCTCCCTTCAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585486" ref_strand="+" ref_description="SGN-E585486 [67946]">
      <seq>attcgggtgtttgatacacctggcctcaagtcctctgccatggaacagggtttcaatcgcagtgtcttgtcttcagtaaagaagttgactaagaagaacccccctgatattttcctctatgtcgatcggctggatgcccaaactagagatctcaatgatcttcctatgctgaagactatcacaagttgtcttggtccttcaatatggcgaagtgccatagtcaccctcacacatggagcttctgcacctccagatggaccttctggatcccctttaagttatgaggtgtttgttactcaaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaatcatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccnactcttccgtacatgctttcttcaatgttgcagtcacgtgcgcatccaaagttttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaggaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103926" stop="102620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103626" g_stop="102920" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E585486" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103626" e_stop="102920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTGAAGACTATCACAAGTTGTCTTGGCCCTTCAATATGGCGAAGCGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGA</genome_strand>
        <mrna_strand>ATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCCATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAACCCCCCTGATATTTTCCTCTATGTCGATCGGCTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTGAAGACTATCACAAGTTGTCTTGGTCCTTCAATATGGCGAAGTGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCNACTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGTTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAGGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583301" ref_strand="+" ref_description="SGN-E583301 [9122]">
      <seq>ctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtactctctggtagaaaatcatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggcaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccggtaagctcttatggtttccgcacacagctcaccagctcttccgtacatgctttcttcaatgttgcagtcacgtgacgcatccaaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103622" stop="102698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103322" g_stop="102997" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E583301" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103322" e_stop="102997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGT-CTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGG-AGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACC-GTAAGCTCTT-TGGTTTCCGCACAC-GCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTG-CGCATCCAAAGCTT</genome_strand>
        <mrna_strand>CTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTACTCTCTGGTAGAAAATCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGCAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGGTAAGCTCTTATGGTTTCCGCACACAGCTCACCAGCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCACGTGACGCATCCAAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585492" ref_strand="+" ref_description="SGN-E585492 [67952]">
      <seq>ctaccataaactctatctttggagaggaaaaaacatcaattgatgcctttggacctgctaccaccagtgtgaaagagatcagtggtgttgtagatggtgttaagattcgggtgtttgatacacctggccccaagtcctctgccatggaacagggtttcaatcgcagtgtcttgtcttcagtaaagaagttgactaagaagaacccccctgatattttcctctatgtcgatcggctggatgcccaaactagagatctcaatgatcttcctatgctcgaagactatcacaagttgtcttggtccttcaatatggcgaagtgccatagtcaccctcacacatggagcttctgcacctccagatggaccttctggatcccctttaagttatgaggtgtttgttactcaaagatctcatgttgttcagcagtctatcgggcaagcagtaggcgatttacgaatgatgagtccaagtttgatgaatcccgtctctctggtagaaaatcatccatcttgtaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactgctattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttgggttcccgcacacgctcaccagctcttccgtacatgctttcttcaatgttgcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="104030" stop="102715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103730" g_stop="103015" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E585492" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103730" e_stop="103015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTTGGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCT-GAAGACTATCACAAGTTGTCTTGGCCCTTCAATATGGCGAAGCGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTT-GGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCA</genome_strand>
        <mrna_strand>CTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTTGGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGGGTGTTTGATACACCTGGCCCCAAGTCCTCTGCCATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAACCCCCCTGATATTTTCCTCTATGTCGATCGGCTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTCGAAGACTATCACAAGTTGTCTTGGTCCTTCAATATGGCGAAGTGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCTATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTTTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGTAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTGCTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGGTTCCCGCACACGCTCACCAGCTCTTCCGTACATGCTTTCTTCAATGTTGCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333345" ref_strand="+" ref_description="SGN-E333345 [cTOD-20-N20]">
      <seq>caacaggtggtgattctgatggtggcaacataacagtcacgtctcaagatggatcaagactgttctctgttgaacgtcctgctggtcttgggtcatcactccggtcactgaggccagctccccgaccaagccaacccaatctttttactcattccaatctccagaacagtggagaatctgagaacaacttgagtgaagaagagaagaagaaactggacacactacagcagatcagggtcaagtttttgaggcttattcacaggttgggtctatcttctgatgagcccatagctgcacaagttttgtaccggatgacacttattgcacgaaggcaaaacagtccactttttagcgttgaggctgccaagatgaaagctttccagcttgaagcagaggggaaagatgatttggacttctctgtgaatatcctggttattggcaaatctggggtgggtaagagcgctaccataaactctatctttggagaggaaaaaacatcaattgatgcctttggacctgctaccaccagtgtgaaagagatcagtggtgttgtagatggtgttaagattcgggtgtttgatacacctggcctcaagtcctctgcgatggaacanggntttcatcgcagtgtcttgtcttcagtaaagaagttgactaagaagaatccccctgatatttacctctatgtcgatcggttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="104492" stop="103191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104192" g_stop="103491" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E333345" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104192" e_stop="103491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGGTGGTGATTCTGATGGTGGCAACATAACAGTCACGTCTCAAGATGGATCAAGACTGTTCTCTGTTGAACGTCCTGCTGGTCTTGGGTCATCACTCCGGTCACTGAGGCCAGCTCCCCGACCAAGCCAACCCAATCTTTTTACTCATTCCAATCTCCAGAACAGTGGAGAATCTGAGAACAACTTGAGTGAAGAAGAGAAGAAGAAACTGGACACACTACAGCAGATCAGGGTCAAGTTTTTGAGGCTTATTCACAGGTTGGGTCTATCTTCTGATGAGCCCATAGCTGCACAAGTTTTGTACCGGATGACACTTATTGCACGAAGGCAAAACAGTCCACTTTTTAGCGTTGAGGCTGCCAAGATGAAAGCTTTCCAGCTTGAAGCAGAGGGGAAAGATGATTTGGACTTCTCTGTGAATATCCTGGTTATTGGCAAATCTGGGGTGGGTAAGAGCGCTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTTGGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATG</genome_strand>
        <mrna_strand>CAACAGGTGGTGATTCTGATGGTGGCAACATAACAGTCACGTCTCAAGATGGATCAAGACTGTTCTCTGTTGAACGTCCTGCTGGTCTTGGGTCATCACTCCGGTCACTGAGGCCAGCTCCCCGACCAAGCCAACCCAATCTTTTTACTCATTCCAATCTCCAGAACAGTGGAGAATCTGAGAACAACTTGAGTGAAGAAGAGAAGAAGAAACTGGACACACTACAGCAGATCAGGGTCAAGTTTTTGAGGCTTATTCACAGGTTGGGTCTATCTTCTGATGAGCCCATAGCTGCACAAGTTTTGTACCGGATGACACTTATTGCACGAAGGCAAAACAGTCCACTTTTTAGCGTTGAGGCTGCCAAGATGAAAGCTTTCCAGCTTGAAGCAGAGGGGAAAGATGATTTGGACTTCTCTGTGAATATCCTGGTTATTGGCAAATCTGGGGTGGGTAAGAGCGCTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTTGGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACANGGNTTTCATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318001" ref_strand="+" ref_description="SGN-E318001 [cTOA-30-P13]">
      <seq>agtctggacaccaaggatgttgaagtggaacctgagcaggcagtgtctggaactatatatgccaatggtgaccattccggagaaagcgtctagcgagatgtattggaagttgaagtctctggccaaacatctgctatatcaaggtcaatcactggctcagagcaagaaggagaagctaaagatcatatagatgaagaagctaaccttgaaggctcagtttctgatggagagacagatggtatgatttttggaagctctgaagctgccaaacagtttatggaggagctggaaagggaatctggtggtggctcctatgctggtgctgaagtttctcaggatattgatggtcagattgtcaccgactccgatgaagaggctgatactgatgaagaaggagatgtgaaggagttgtttgattcgactgccttagctgctcttttaaaaacagcaacaggtggtgattctgatggtggcaacataacagtcgcatctcaagatggatcatgactgttctctgttgcacgtgctgctggtcttgcgtcatcactccggtcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="104940" stop="103783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104640" g_stop="104083" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-E318001" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104640" e_stop="104083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTGGACACCAAGGATGTTGAAGTGGAACCTGAGCAGGCAGTGTCTGGAACTATATATGCCAATGGTGACCATTCCGGAGAAAGCGTCGAGCGAGATGTAGTGGAAGTTGAAGTCTCTGGTCAAACATCTGCTATATCAAGGTCAATCACTGGCTCAGAGCAAGAAGGAGAAGCTAAAGATCATATAGATGAAGAAGCTAACCTTGAAGGCTCAGTTTCAGATGGAGAGACAGATGGTATGATTTTTGGAAGCTCTGAAGCTGCCAAACAGTTTATGGAGGAGCTGGAAAGGGAATCTGGTGGTGGCTCCTATGCTGGTGCTGAGGTTTCTCAGGATATTGATGGTCAGATTGTCACCGACTCAGATGAGGAGGCTGATACTGATGAAGAAGGAGATGTGAAGGAGTTGTTTGATTCAGCTGCCTTAGCTGCTCTTTTAAAAGCAGCAACAGGTGGTGATTCTGATGGTGGCAACATAACAGTCACGTCTCAAGATGGATCAAGACTGTTCTCTGTTGAACGTCCTGCTGGTCTTGGGTCATCACTCCGGTCACTG</genome_strand>
        <mrna_strand>AGTCTGGACACCAAGGATGTTGAAGTGGAACCTGAGCAGGCAGTGTCTGGAACTATATATGCCAATGGTGACCATTCCGGAGAAAGCGTCTAGCGAGATGTATTGGAAGTTGAAGTCTCTGGCCAAACATCTGCTATATCAAGGTCAATCACTGGCTCAGAGCAAGAAGGAGAAGCTAAAGATCATATAGATGAAGAAGCTAACCTTGAAGGCTCAGTTTCTGATGGAGAGACAGATGGTATGATTTTTGGAAGCTCTGAAGCTGCCAAACAGTTTATGGAGGAGCTGGAAAGGGAATCTGGTGGTGGCTCCTATGCTGGTGCTGAAGTTTCTCAGGATATTGATGGTCAGATTGTCACCGACTCCGATGAAGAGGCTGATACTGATGAAGAAGGAGATGTGAAGGAGTTGTTTGATTCGACTGCCTTAGCTGCTCTTTTAAAAACAGCAACAGGTGGTGATTCTGATGGTGGCAACATAACAGTCGCATCTCAAGATGGATCATGACTGTTCTCTGTTGCACGTGCTGCTGGTCTTGCGTCATCACTCCGGTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457855" ref_strand="+" ref_description="SGN-E457855 [cPRO-3-N8]">
      <seq>gaactactcaaggatattgatcctccaatttctgctttaactaggcgccaaacatttaaaaatgccttacagcaaggagtagttgatttcaacacgattgatgtcacatttgaaaattttccatattacttatgtgaaaacacaaagaatgttctgattgcttccacttatatacacttgaagtgtaacgggtttgcacaatatgtatcagatctccccacagtgtgccctaggattttgctatcgggtccagcaggttcagaaatttatcaggagacattggccaaagcacttgctaaatacttttgtgctaagctactgatagttgattctctcttgctgcctggtggttcaagtgccaaagatgtcgagcctgttaaagtaagttcaaaaccagagagagctagtgtatttgctaaacgtgctgcgcaagcggcagcactgcatcttaataagaagccagcttcaagcgttgaggctgatattactggtggttcaattttaagttctcatgctcagcccaagcaggaggcatcgactgcctcgtcaaaaaactacacttttaagaaaggtgatagagtgaagtatgtcggatccttaacatcaggcttttctccattgcaagcacctttaaggggtccaacatatggttacaggggcaaagtggttcttgcatttgaggaaaatgggtcctctaaaattggtgtcagatttgatagatcaattccagagggtaatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="120740" stop="123730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121040" g_stop="121173" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121174" i_stop="121345" i_length="172">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121346" g_stop="121467" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="256" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121468" i_stop="121552" i_length="85">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.729" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121553" g_stop="121644" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="348" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121645" i_stop="122577" i_length="933">
            <donor d_prob="0.208" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122578" g_stop="122800" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="571" r_length="223" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122801" i_stop="122946" i_length="146">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122947" g_stop="123010" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="635" r_length="64" r_score="0.891"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123011" i_stop="123320" i_length="310">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123321" g_stop="123430" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="745" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-E457855" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121040" e_stop="121173"/>
          <exon e_start="121346" e_stop="121467"/>
          <exon e_start="121553" e_stop="121644"/>
          <exon e_start="122578" e_stop="122800"/>
          <exon e_start="122947" e_stop="123010"/>
          <exon e_start="123321" e_stop="123430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTACTCAAGGATTTTGATCGTCCAGTTTCTGCTTTAACTAGGCGCCAAACATTTAAAAATGCCTTACAGCAAGGAGTAGTTGATTTCAACACTATTGATGTCACATTTGAAAATTTTCCATATTACTTATGGTAAAAATTTGATCTTACCCCCCTTCCCCCCCTCTTTCCAGTTTTCTGGTTGGTATTGCTTTCTTTTCTGTCTTCTCTCGCACCAAAATTATGTTTGTTCAAGTTGAAATTGGCACTTGTGTATTTCTGGAATGTGTTCCATTGATTTCTATACTACATTTTTGTCTGACAGTGAAAATACAAAGAATGTTCTGATTGCTTCCACTTATATACACTTGAAGTGTAACGGGTTTGCAAAATTTGCATCAGATCTTCCCACAGTGTGCCCTAGGATTTTGCTATCAGGTCCAGCAGGTAACTACTGCTCCATAGAAATCACTTATCTGGCTTTGTTCAGTTCTCCTGCCCTCGAAATCACATTTTGACTTGCTGCTCACAGGTTCAGAGATTTATCAGGAGACATTGGCCAAAGCACTTGCTAAGTACTTTTGTGCTAAGCTAATGATAGTTGATTCTCTCTTGCTGCCTGGTGTAAGTGTCTTCTATTACTTGGCTCATGTGTCCTCATTTGAGGGGCTCATACTTTTTTACCACTGGTTACACCCAATATGCCTCTTTATATTAGTTATCTTGCTTCCTATCGCCTCATTTCATGGGAAGTTAGAAATGTAGTTGAAAGTTTTGAAAGTTATACGAGAAATACGCGACAAGCTAAGACTGTTCGGATTACAGGCCATTTCTGGTTTTCCAATTCCTTTTTTAGTAATAAATTGAATAGGAAAGTCTGTTTATTGGGGTTGAAAAAAGGAAACTTTGTATCTAAAATTGTGAGACCAATAGCTCCTTTGCATAATAGCCAAATTTTTCTTTTTTCTAGTGTAACCATCAAAAGATAAACTATTACATATATTAATGTTCATTTCATCTAACATTTACTGACAAAATATATGCAAAATGGCTTGAAAATAAGGAAAAAACAGCTTTGAGTAAGGGGGGAAAGAAAGGAAAACATTTTGGTTTGAGCCTTGGCCTCGAGAACAATAGGTATATTACTTCAATGGGGTATTACAGAATGGGACAGAAACTTTGGCTGCAAATTTGTTAGTTTGCTTGTGTGAATCAACAATTTTCCTTGTTTCATTTGGGATTTTGTCAGTATGCTCATATAAATCAACACTGATCATCCACACTGCCCACTGCAAGCCAGATTAGAAGTAAATAGGGAAGTGCTTGACGGCTGGCTCAGGGCAATGCAATCTAAAGTTTTGCAAAATTTCTAATAATCATATGGATGGTGGTCAGACTATTGAACAGCTGCCCACCTGAGAATTATTGGGCAGTGTTAAGTGAAATGGGAGTGATTGTAGTTTGAACATTTCTGTTATTGTTGGTGTAAGAACAGGTTAATATGATCGAATTTTTATTACCCTCCAATTCATTTCCTTTTTCTTTAATATTATGTAGGTTTCAAGTTCCAAAGATGTCGAGCCTGTTAAAGTAAGCTCAAAACCAGAGAGAGCTAGTGTATTTGCTAAACGTGCGGCGCAAGCGGCAGCATTGCATCTGAATAAAAAGCCGGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCAATTTTAAGTTCTCATGCTCAGCCCAAGCAGGAGGCATCGACTGCCTCATCAAAAAACTATACTTTTAAGAAAGGTAATTGTTTCTTTGATAGTGAGAACTCCCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATGTCAGGCTAGAAAATATCCTTTGTAGGTGGCAGTTTTGTGCTTAATGCAAAACCGTCATATTGACAGGTGATAGAGTGAAGTACATCGGATCTTTAACATCAAGCTTTTCTCCGTTGCAATCACCTATAAGGTAACTGCAGTAAGTCTGTTAATTTATTTTCCAGTGATATTAGTTCAGTAAGCTCATTCAATCTCATACATAATATGATTGATGATGCATTTTGAATCACTTCTGAAAACTTGCTGTTTGAATAATGATCTCTGTTAGGATTGAAAAACAAGCTATTGGTCTACTTGTTATTCTCTGTGAATAAAATGCTCTCTGTCAGGACTAACTTCTTGCTTAGTTCATTTTCTTGTGAACAAAATGCTGTCTCTATTGAGATATGTCGGTCAGTCATTTCTTTATTTTAAAATCACTATAACATGCATGATTGCAGGGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAGGAAAATGGGTCCTCTAAAATTGGTGTCAGATTTGATAGATCAATTCCTGAGGGTAATGATCTTG</genome_strand>
        <mrna_strand>GAACTACTCAAGGATATTGATCCTCCAATTTCTGCTTTAACTAGGCGCCAAACATTTAAAAATGCCTTACAGCAAGGAGTAGTTGATTTCAACACGATTGATGTCACATTTGAAAATTTTCCATATTACTTATG............................................................................................................................................................................TGAAAACACAAAGAATGTTCTGATTGCTTCCACTTATATACACTTGAAGTGTAACGGGTTTGCACAATATGTATCAGATCTCCCCACAGTGTGCCCTAGGATTTTGCTATCGGGTCCAGCAG.....................................................................................GTTCAGAAATTTATCAGGAGACATTGGCCAAAGCACTTGCTAAATACTTTTGTGCTAAGCTACTGATAGTTGATTCTCTCTTGCTGCCTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAGTGCCAAAGATGTCGAGCCTGTTAAAGTAAGTTCAAAACCAGAGAGAGCTAGTGTATTTGCTAAACGTGCTGCGCAAGCGGCAGCACTGCATCTTAATAAGAAGCCAGCTTCAAGCGTTGAGGCTGATATTACTGGTGGTTCAATTTTAAGTTCTCATGCTCAGCCCAAGCAGGAGGCATCGACTGCCTCGTCAAAAAACTACACTTTTAAGAAAG..................................................................................................................................................GTGATAGAGTGAAGTATGTCGGATCCTTAACATCAGGCTTTTCTCCATTGCAAGCACCTTTAAG......................................................................................................................................................................................................................................................................................................................GGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAGGAAAATGGGTCCTCTAAAATTGGTGTCAGATTTGATAGATCAATTCCAGAGGGTAATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>231</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3232" PGL_stop="2745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3232" e_stop="2745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="3232" e_stop="2745" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3232" stop="2745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGAGACGTACAGAAAGTAGGTGCACACTTCTCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTCTTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> I  G  D  V  Q  K  V  G  A  H  F  S  M  A  S  E  K  C  D  L  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  I  C  L  S  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  T  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  F  V  F  Q  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  R  T  E  S  R  C  T  L  L  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  S  F  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  H  K  A  K  A  E  S  F  L  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5822" PGL_stop="6206"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5822" e_stop="6206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="5822" e_stop="6206" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5822" stop="6206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTATCTAATTGAGAGTGGGTTCTTGTTTTTCTTTAGCTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAATCACTAATAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAATGACTCAAAGGGTGAGTCATGTTGTACTTCGGTTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  I  *  L  R  V  G  S  C  F  S  L  A  H  I  L  V  D  L  V  M  K  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  L  *  F  R  I  K  *  Y  S  I  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  A  *  I  *  M  L  F  *  L  F  *  M  T  Q  R  V  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  S  N  *  E  W  V  L  V  F  L  *  L  I  F  W  L  I  S  L  *  R  S  K  Y  Y  M  H  K  I  R  Y  V  F  S  K  I  F  Y  D  L  E  *  N  S  I  Q  S  L  I  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  T  S  *  I  E  E  G  I  K  F  *  *  H  E  F  E  C  Y  F  D  C  F  E  *  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  Y  L  I  E  S  G  F  L  F  F  F  S  S  Y  F  G  *  S  R  Y  E  D  Q  S  I  I  C  I  K  S  G  M  Y  F  L  K  Y  F  M  I  *  N  K  I  V  F  N  H  *  *  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  L  L  K  *  K  K  V  *  N  F  N  S  M  N  L  N  V  I  L  I  V  L  N  D  S  K  G  E  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6442" PGL_stop="7086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6442" e_stop="7086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="6442" e_stop="7086" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6442" stop="7086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6716" stop="7069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGAAAAGTCTTGAAATTCGTCCTGTTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATACGATAATTTTAAAATTGCATGTTCACTTGCTCCATTCTATCGTATGAATGTGGTAGCAGTAAATAGTTAGTCTGAAAGATGACAAATGATTAACGATATGAAAAAAGGCATGAAGGGACGGAATTATAATAGTCATCATTGTGGTAATTATAAAAGAAAGAACACTATGGGTTCTCCAAATAGTCCTTCGAAATGTGAAGACAGTTTTCATTATCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAAATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAGAAAAAAAATG</gDNA_template>
            <first_frame> F  D  E  K  S  *  N  S  S  C  *  I  C  S  I  P  *  K  E  C  G  S  N  I  R  *  F  *  N  C  M  F  T  C  S  I  L  S  Y  E  C  G  S  S  K  *  L  V  *  K  M  T  N  D  *  R  Y  E  K  R  H  E  G  T  E  L  *  *  S  S  L  W  *  L  *  K  K  E  H  Y  G  F  S  K  *  S  F  E  M  *  R  Q  F  S  L  S  K  W  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  M  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  *  *  S  T  Y  K  *  L  V  H  S  L  K  R  M  *  L  M  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  D  V  S  K  S  L  W  V  G  Y  M  S  Q  L  T  S  I  E  G  L  R  K  K  M </first_frame>
            <second_frame>  L  M  K  S  L  E  I  R  P  V  E  F  A  P  F  L  E  K  N  V  V  A  T  Y  D  N  F  K  I  A  C  S  L  A  P  F  Y  R  M  N  V  V  A  V  N  S  *  S  E  R  *  Q  M  I  N  D  M  K  K  G  M  K  G  R  N  Y  N  S  H  H  C  G  N  Y  K  R  K  N  T  M  G  S  P  N  S  P  S  K  C  E  D  S  F  H  Y  Q  N  G  T  K  G  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  K  *  S  D  G  T  L  D  H  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  D  E  V  H  I  N  N  *  F  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  Q  M  *  A  N  H  Y  G  L  D  I  C  H  N  S  P  L  *  K  V  *  E  K  K   </second_frame>
            <third_frame>   *  *  K  V  L  K  F  V  L  L  N  L  L  H  S  L  K  R  M  W  *  Q  H  T  I  I  L  K  L  H  V  H  L  L  H  S  I  V  *  M  W  *  Q  *  I  V  S  L  K  D  D  K  *  L  T  I  *  K  K  A  *  R  D  G  I  I  I  V  I  I  V  V  I  I  K  E  R  T  L  W  V  L  Q  I  V  L  R  N  V  K  T  V  F  I  I  K  M  V  R  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  N  K  V  M  V  H  L  I  I  Q  N  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  L  M  K  Y  I  *  I  I  S  S  F  L  E  E  N  V  T  Y  D  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  E  Q  I  I  M  G  W  I  Y  V  T  T  H  L  Y  R  R  F  E  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9208" PGL_stop="8533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9208" e_stop="8533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="9208" e_stop="8533" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9208" stop="8533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9208" stop="8806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCTTCGACGGTTATTTGATATCGATTCCAACAGGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAAATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  N  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  L  H  A  F  K  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  I  L  I  Y  G  L  S  V  Q  N  V  T  F  L  S  E  T  K  Y  N  *  I  V  H  F  T  W  P  T  I  Y  L  F  T  L  Y  D  R  F  E  F  K  I  L  I  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  N  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  R  I  I  D  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  Y  M  H  S  S  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  S  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  I  E  L  C  I  L  L  G  Q  P  F  I  C  S  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  L  R  R  L  F  D  I  D  S  N  R  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  K  E  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  V  S  *  T  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  E  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  F  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  I  S  P  K  C  H  F  S  K  *  N  K  I  *  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  H  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  F  D  G  Y  L  I  S  I  P  T  G  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  K  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  S  R  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9206" stop="8976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQEFSYNLHCLARHYNYSFTCIQVFICCQIKTNLISSTKGENISTNVRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8755" stop="8534"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQNFMKCYVNVLFYSTCLIIMTILIICSFLLQGILYLESIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="8814" PGL_stop="9777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8814" e_stop="9777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="8814" e_stop="9777" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8814" stop="9491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8815" stop="9369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8819" stop="9272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8863" stop="9445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9221" stop="9629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9297" stop="9777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGAGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCATAATATTTA</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  V  N  R  *  M  V  G  Q  V  K  C  T  I  Q  L  Y  F  V  S  L  R  K  V  T  F  W  T  D  S  P  *  I  K  I  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  F  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  F  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  R  P  T  D  C  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  Q  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  E  F  I  L  S  R  G  I  Q  D  K  I  D  *  L  R  R  C  I  I  F  </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  *  T  D  K  W  L  A  K  *  N  A  Q  F  N  Y  I  L  F  H  L  E  K  *  H  F  G  L  I  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  S  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  F  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  K  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  S  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  N  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  S  L  F  Y  P  E  E  S  K  T  K  L  I  D  Y  A  D  A  *  Y  L </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  E  Q  I  N  G  W  P  S  K  M  H  N  S  I  I  F  C  F  T  *  K  S  D  I  L  D  *  *  S  I  N  Q  D  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  F  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  *  T  Y  R  L  L  I  *  Q  I  K  Y  L  S  N  S  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  L  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  T  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  *  V  Y  S  I  P  R  N  P  R  Q  N  *  L  I  T  Q  M  H  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="18203" PGL_stop="16542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18203" e_stop="17968"/>
            <exon e_start="17852" e_stop="16542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.996" e_score="0.992"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="18203" e_stop="17968" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17967" i_stop="17853" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="17852" e_stop="16542" e_length="1311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18203" stop="17968"/>
              <exon start="17852" stop="17300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18202" stop="17968"/>
              <exon start="17852" stop="17692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18035" stop="17968"/>
              <exon start="17852" stop="17445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17831" stop="17543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17650" stop="17210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17352" stop="16546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17334" stop="16542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17321" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16837" stop="16542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16837" stop="16542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16836" stop="16542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGTCATAGCTGTATTCGCAGCCATCATTGCAAGTCAAGCTTTGATTTCCGGGACATTCGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATACATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGATCGCTTGTGTTCTTACCACTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATG : GAATAGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGATATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCTTGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTTAGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCACTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAGTTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCCAATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTCTGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGTGAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCGCAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGAAGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCTTCCTTGATTGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGGAGAACAAGACGTTGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTACGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCCAACGAAGCGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTAAAAAAAAATTGTAAGGTTTAAAATAAATGTGCATAGAGTTGAAGGGAACAAGGGAGAAGGCACCATATATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTTCTTTTTGTTAATTTCTTAGTTTTCAATTTGTTTGTTTGTTTGGATTTTGTATGAGATAAGCTAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTGTTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTGTTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGTTCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAA</gDNA_template>
            <first_frame> V  C  H  S  C  I  R  S  H  H  C  K  S  S  F  D  F  R  D  I  R  Y  N  P  A  I  S  G  F  R  M  L  S  S  C  *  N  R  A  Y  I  K  E  T  S  W  T  N  L  H  S  *  N  Q  *  P  S  H  D  R  L  C  S  Y  H  Y  R  I  Q  D  Y  *  K  A  *  Q  C  L  W :   N  S  S  G  V  C  D  V  P  N  I  V  L  P  H  T  S  H  D  L  D  M  E  N  Q  H  S  S  Y  Y  R  L  Y  S  N  H  C  F  G  *  A  C  I  P  K  R  S  P  L  Q  V  *  T  R  W  L  P  P  C  G  F  S  S  V  P  N  V  Y  H  V  R  M  E  L  C  V  P  *  E  V  S  L  R  A  R  T  Q  D  L  S  R  K  S  *  R  N  I  G  C  N  Q  F  T  S  P  S  R  S  C  H  F  L  L  *  T  S  P  R  N  P  P  N  L  Q  A  L  C  *  E  C  T  C  F  T  L  C  P  R  V  R  F  C  Q  I  T  S  H  K  Q  S  S  T  R  R  K  V  P  L  Q  K  G  E  T  I  *  P  L  C  V  P  L  C  D  T  L  W  I  Q  *  N  A  Q  *  G  R  A  Y  R  E  V  I  G  R  K  A  K  E  L  H  Q  G  R  L  H  V  L  S  C  S  K  W  R  Q  S  R  R  N  C  F  L  D  *  E  R  R  R  S  T  *  E  S  F  Q  H  G  S  G  S  F  G  W  R  T  R  R  C  R  V  Q  G  V  W  C  N  Q  K  N  G  D  Q  L  R  I  Q  F  P  Q  E  E  L  K  T  E  *  *  Q  S  I  R  Y  P  N  E  A  N  A  Q  S  W  N  D  M  *  A  L  G  *  L  F  S  L  K  K  N  C  K  V  *  N  K  C  A  *  S  *  R  E  Q  G  R  R  H  H  I  C  F  N  F  H  H  Q  K  V  L  A  Q  E  K  I  M  F  F  L  L  I  S  *  F  S  I  C  L  F  V  W  I  L  Y  E  I  S  *  A  K  P  D  F  V  R  E  *  A  K  Y  L  Y  F  V  F  F  L  F  Q  R  K  E  K  I  K  I  C  L  D  K  K  T  T  *  V  *  L  F  L  T  S  K  T  F  L  F  L  P  C  N  I  L  *  K  I  V  S  S  Y  I  I  I  I  I  N  L  R  I  N  S  L  *   </first_frame>
            <second_frame>  F  V  I  A  V  F  A  A  I  I  A  S  Q  A  L  I  S  G  T  F  A  I  I  Q  Q  S  L  A  L  G  C  F  P  R  V  K  I  V  H  T  S  K  K  H  H  G  Q  I  Y  I  P  E  I  N  N  L  L  M  I  A  C  V  L  T  T  I  G  F  K  T  T  E  K  L  S  N  A  Y   : G  I  A  V  V  F  V  M  F  L  T  S  C  F  L  I  L  V  M  I  L  I  W  K  T  N  I  L  L  I  I  V  Y  I  L  I  I  V  S  V  E  L  V  Y  L  S  A  V  L  Y  K  F  E  Q  G  G  Y  L  P  V  A  L  A  L  F  L  M  F  I  M  Y  V  W  N  Y  V  Y  R  K  K  Y  H  Y  E  L  E  H  K  I  S  P  E  K  V  K  E  T  L  D  A  T  S  S  H  R  L  P  G  L  A  I  F  Y  S  E  L  V  H  G  I  P  P  I  F  K  H  Y  V  E  N  V  P  A  L  H  S  V  L  V  F  A  S  V  K  S  L  P  I  S  K  V  P  L  E  E  R  F  L  F  R  R  V  K  P  Y  D  L  Y  V  F  R  C  V  I  R  Y  G  Y  N  E  M  R  N  E  E  E  P  I  E  K  L  L  V  E  R  L  K  N  Y  I  K  E  D  Y  M  F  S  V  A  A  N  G  D  N  Q  G  E  T  A  S  L  I  E  K  D  V  E  V  L  E  R  A  S  N  M  G  V  V  H  L  V  G  E  Q  D  V  V  A  C  K  G  S  G  V  T  K  R  M  V  I  N  Y  A  Y  N  F  L  K  R  N  L  R  Q  S  S  N  K  V  F  D  I  P  T  K  R  M  L  K  V  G  M  T  C  E  L  *  G  D  Y  F  L  *  K  K  I  V  R  F  K  I  N  V  H  R  V  E  G  N  K  G  E  G  T  I  Y  V  S  T  S  I  I  K  R  C  L  H  K  K  K  *  C  S  F  C  *  F  L  S  F  Q  F  V  C  L  F  G  F  C  M  R  *  A  K  L  S  L  I  L  *  E  N  K  L  S  I  C  I  L  F  F  S  C  F  K  E  K  R  R  S  R  Y  V  *  I  K  K  Q  H  R  C  S  C  F  *  L  A  K  H  F  C  F  Y  L  V  I  S  C  K  R  L  S  V  H  T  *  *  *  *  L  I  *  E  *  I  V  Y  R  </second_frame>
            <third_frame>   L  S  *  L  Y  S  Q  P  S  L  Q  V  K  L  *  F  P  G  H  S  L  *  S  S  N  L  W  L  *  D  A  F  L  V  L  K  S  C  I  H  Q  R  N  I  M  D  K  S  T  F  L  K  S  I  T  F  S  *  S  L  V  F  L  P  L  S  D  S  R  L  L  K  S  L  A  M  L  M  :  E  *  Q  W  C  L  *  C  S  *  H  R  A  S  S  Y  *  S  *  S  *  Y  G  K  P  T  F  F  L  L  S  S  I  F  *  S  L  F  R  L  S  L  Y  T  *  A  Q  S  F  T  S  L  N  K  V  V  T  S  L  W  L  *  L  C  S  *  C  L  S  C  T  Y  G  T  M  C  T  V  R  S  I  T  T  S  *  N  T  R  S  L  P  K  K  L  K  K  H  W  M  Q  P  V  H  I  A  F  Q  V  L  P  F  S  T  L  N  *  S  T  E  S  P  Q  S  S  S  I  M  L  R  M  Y  L  L  Y  T  L  S  S  C  S  L  L  S  N  H  F  P  *  A  K  F  H  *  K  K  G  S  S  S  E  G  *  N  H  M  T  S  M  C  S  V  V  *  Y  V  M  D  T  M  K  C  A  M  R  K  S  L  S  R  S  Y  W  *  K  G  *  R  T  T  S  R  K  I  T  C  S  Q  L  Q  Q  M  E  T  I  K  E  K  L  L  P  *  L  R  K  T  S  K  Y  L  R  E  L  P  T  W  E  W  F  I  W  L  E  N  K  T  L  S  R  A  R  G  L  V  *  P  K  E  W  *  S  T  T  H  T  I  S  S  R  G  T  *  D  R  V  V  T  K  Y  S  I  S  Q  R  S  E  C  S  K  L  E  *  H  V  S  F  R  V  I  I  F  S  K  K  K  L  *  G  L  K  *  M  C  I  E  L  K  G  T  R  E  K  A  P  Y  M  F  Q  L  P  S  S  K  G  A  C  T  R  K  N  N  V  L  F  V  N  F  L  V  F  N  L  F  V  C  L  D  F  V  *  D  K  L  S  *  A  *  F  C  K  R  I  S  *  V  F  V  F  C  F  F  L  V  S  K  K  R  E  D  Q  D  M  S  R  *  K  N  N  I  G  V  V  V  F  D  *  Q  N  I  F  V  F  T  L  *  Y  L  V  K  D  C  Q  F  I  H  N  N  N  N  *  S  K  N  K  *  F  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18202" stop="17968"/>
                    <exon start="17852" stop="16966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVIAVFAAIIASQALISGTFAIIQQSLALGCFPRVKIVHTSKKHHGQIYIPEINNLLMIACVLTTIGFKTTEKLSNAYGIAVVFVMFLTSCFLILVMILIWKTNILLIIVYILIIVSVELVYLSAVLYKFEQGGYLPVALALFLMFIMYVWNYVYRKKYHYELEHKISPEKVKETLDATSSHRLPGLAIFYSELVHGIPPIFKHYVENVPALHSVLVFASVKSLPISKVPLEERFLFRRVKPYDLYVFRCVIRYGYNEMRNEEEPIEKLLVERLKNYIKEDYMFSVAANGDNQGETASLIEKDVEVLERASNMGVVHLVGEQDVVACKGSGVTKRMVINYAYNFLKRNLRQSSNKVFDIPTKRMLKVGMTCEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="20339" PGL_stop="18732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20339" e_stop="19830"/>
            <exon e_start="19655" e_stop="19430"/>
            <exon e_start="19352" e_stop="19104"/>
            <exon e_start="18997" e_stop="18944"/>
            <exon e_start="18851" e_stop="18732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.955" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.963"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="20339" e_stop="19830" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19829" i_stop="19656" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="19655" e_stop="19430" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19429" i_stop="19353" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="19352" e_stop="19104" e_length="249"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19103" i_stop="18998" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="18997" e_stop="18944" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="18943" i_stop="18852" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="18851" e_stop="18732" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20339" stop="19965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20339" stop="19974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20338" stop="19973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20338" stop="19973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20336" stop="20147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="19922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20326" stop="19830"/>
              <exon start="19655" stop="19524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20326" stop="19830"/>
              <exon start="19655" stop="19564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20312" stop="19872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20255" stop="20025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19945" stop="19830"/>
              <exon start="19655" stop="19430"/>
              <exon start="19352" stop="19104"/>
              <exon start="18997" stop="18944"/>
              <exon start="18851" stop="18755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19435" stop="19430"/>
              <exon start="19352" stop="19104"/>
              <exon start="18997" stop="18944"/>
              <exon start="18851" stop="18732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19327" stop="19104"/>
              <exon start="18997" stop="18946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAAATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATTTCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCATTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACCAATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGATTTGATCAGCTTTTTTCAAAACAAAACAAAAAAAAATTAAAATCGTTTTCATAAATTAAAAAAAAGAAGAAGATGGGGAGCAACATTGAGGATAACCAAGAAGATGTTCCCATGGAGCTACAACTCAAGGGAAAGAAGCCTTCGAGCCAAAAGTTGAAACGACATGACTCTTTGGATGTCGAAGCAAGCAAATTGCCCGATGCCAAAAAG : GTAGTCGGAATGTCTGTGCTACTAAAACTTGCATTCCAAAGCATAGGAGTGGTGTATGGAGATATTGGAACGTCACCATTGTACGTGTTTTCAACCATCTTTCTCGAAGGTGTAAAACACGAAGAGGATATACTTGGTGCTCTATCTCTCATCTTGTATACGATCACCTTGATCCCTGTCGTCAAGTACGTATTCATCGTTCTCCAAGCTAATGACAACGGAGATG : GTGGTACGTTCGCCTTATATTCATTGATATGCCGATATTCCAAGGTGGGATTGATTCCGAGTACAATGGCAGAAGACAGCGATGTCTCGACTTTTAAACTTGATATGCCTGATAGACGTACACGTAGGGCATCACAACTTAAGTCGATGCTAGAAAACAGCCAATTCGCGAAGTTCTTTCTGCTAATTGCAACAATGCTTGGTACTTCCATGGTTATCGGTGATGGTGTCCTAACACCCTGTATTTCAG : TTTTGTCTGCAATTGGAGGAGTTAAAGCAGCTGCTCCAGACGCAATGACTGAAG : ACAGGATCGTTTGGCTTGCAGTAGCCATCTTGATACTTCTGTTCATGTTTCAAAGATTTGGAACTGAAAAAGTTGGTTACACATTTGCACCTATACTTTGCTTATGGTTTGTATTGATTG</gDNA_template>
            <first_frame> I  N  F  I  D  W  C  N  K  R  I  V  V  L  G  N  A  F  A  K  I  L  *  L  I  E  F  *  G  F  *  S  R  T  Q  S  I  I  Q  I  S  *  L  I  E  F  *  G  V  L  I  S  N  S  I  N  H  S  F  A  F  R  W  C  L  P  P  T  F  L  F  V  F  L  L  F  F  *  A  T  N  S  L  V  I  K  F  T  C  Q  W  N  S  T  N  F  N  F  A  *  F  D  Q  L  F  S  K  Q  N  K  K  K  L  K  S  F  S  *  I  K  K  K  K  K  M  G  S  N  I  E  D  N  Q  E  D  V  P  M  E  L  Q  L  K  G  K  K  P  S  S  Q  K  L  K  R  H  D  S  L  D  V  E  A  S  K  L  P  D  A  K  K  :  V  V  G  M  S  V  L  L  K  L  A  F  Q  S  I  G  V  V  Y  G  D  I  G  T  S  P  L  Y  V  F  S  T  I  F  L  E  G  V  K  H  E  E  D  I  L  G  A  L  S  L  I  L  Y  T  I  T  L  I  P  V  V  K  Y  V  F  I  V  L  Q  A  N  D  N  G  D   : G  G  T  F  A  L  Y  S  L  I  C  R  Y  S  K  V  G  L  I  P  S  T  M  A  E  D  S  D  V  S  T  F  K  L  D  M  P  D  R  R  T  R  R  A  S  Q  L  K  S  M  L  E  N  S  Q  F  A  K  F  F  L  L  I  A  T  M  L  G  T  S  M  V  I  G  D  G  V  L  T  P  C  I  S   : V  L  S  A  I  G  G  V  K  A  A  A  P  D  A  M  T  E   : D  R  I  V  W  L  A  V  A  I  L  I  L  L  F  M  F  Q  R  F  G  T  E  K  V  G  Y  T  F  A  P  I  L  C  L  W  F  V  L  I  </first_frame>
            <second_frame>  S  T  L  *  I  G  V  I  R  E  L  *  C  W  E  T  L  L  R  K  F  C  N  *  L  S  F  E  V  F  D  L  E  L  N  Q  S  Y  K  F  R  S  *  L  S  S  E  V  F  *  F  R  I  Q  S  I  I  H  L  H  F  V  G  V  S  H  L  R  F  S  S  F  F  F  S  F  F  K  Q  P  I  H  W  *  L  S  L  H  V  N  G  T  Q  P  I  L  I  L  L  D  L  I  S  F  F  Q  N  K  T  K  K  N  *  N  R  F  H  K  L  K  K  R  R  R  W  G  A  T  L  R  I  T  K  K  M  F  P  W  S  Y  N  S  R  E  R  S  L  R  A  K  S  *  N  D  M  T  L  W  M  S  K  Q  A  N  C  P  M  P  K  R :   *  S  E  C  L  C  Y  *  N  L  H  S  K  A  *  E  W  C  M  E  I  L  E  R  H  H  C  T  C  F  Q  P  S  F  S  K  V  *  N  T  K  R  I  Y  L  V  L  Y  L  S  S  C  I  R  S  P  *  S  L  S  S  S  T  Y  S  S  F  S  K  L  M  T  T  E  M  :  V  V  R  S  P  Y  I  H  *  Y  A  D  I  P  R  W  D  *  F  R  V  Q  W  Q  K  T  A  M  S  R  L  L  N  L  I  C  L  I  D  V  H  V  G  H  H  N  L  S  R  C  *  K  T  A  N  S  R  S  S  F  C  *  L  Q  Q  C  L  V  L  P  W  L  S  V  M  V  S  *  H  P  V  F  Q  :  F  C  L  Q  L  E  E  L  K  Q  L  L  Q  T  Q  *  L  K  :  T  G  S  F  G  L  Q  *  P  S  *  Y  F  C  S  C  F  K  D  L  E  L  K  K  L  V  T  H  L  H  L  Y  F  A  Y  G  L  Y  *  L </second_frame>
            <third_frame>   Q  L  Y  R  L  V  *  *  E  N  C  S  V  G  K  R  F  C  E  N  F  V  I  D  *  V  L  R  F  L  I  S  N  S  I  N  H  T  N  F  V  V  D  *  V  L  R  C  F  D  F  E  F  N  Q  S  F  I  C  I  S  L  V  S  P  T  Y  V  S  L  R  F  S  S  L  F  L  S  N  Q  F  I  G  D  *  V  Y  M  S  M  E  L  N  Q  F  *  F  C  L  I  *  S  A  F  F  K  T  K  Q  K  K  I  K  I  V  F  I  N  *  K  K  E  E  D  G  E  Q  H  *  G  *  P  R  R  C  S  H  G  A  T  T  Q  G  K  E  A  F  E  P  K  V  E  T  T  *  L  F  G  C  R  S  K  Q  I  A  R  C  Q  K   : G  S  R  N  V  C  A  T  K  T  C  I  P  K  H  R  S  G  V  W  R  Y  W  N  V  T  I  V  R  V  F  N  H  L  S  R  R  C  K  T  R  R  G  Y  T  W  C  S  I  S  H  L  V  Y  D  H  L  D  P  C  R  Q  V  R  I  H  R  S  P  S  *  *  Q  R  R  W :   W  Y  V  R  L  I  F  I  D  M  P  I  F  Q  G  G  I  D  S  E  Y  N  G  R  R  Q  R  C  L  D  F  *  T  *  Y  A  *  *  T  Y  T  *  G  I  T  T  *  V  D  A  R  K  Q  P  I  R  E  V  L  S  A  N  C  N  N  A  W  Y  F  H  G  Y  R  *  W  C  P  N  T  L  Y  F  S :   F  V  C  N  W  R  S  *  S  S  C  S  R  R  N  D  *  R :   Q  D  R  L  A  C  S  S  H  L  D  T  S  V  H  V  S  K  I  W  N  *  K  S  W  L  H  I  C  T  Y  T  L  L  M  V  C  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19985" stop="19830"/>
                    <exon start="19655" stop="19430"/>
                    <exon start="19352" stop="19104"/>
                    <exon start="18997" stop="18944"/>
                    <exon start="18851" stop="18733"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKKKKMGSNIEDNQEDVPMELQLKGKKPSSQKLKRHDSLDVEASKLPDAKKVVGMSVLLKLAFQSIGVVYGDIGTSPLYVFSTIFLEGVKHEEDILGALSLILYTITLIPVVKYVFIVLQANDNGDGGTFALYSLICRYSKVGLIPSTMAEDSDVSTFKLDMPDRRTRRASQLKSMLENSQFAKFFLLIATMLGTSMVIGDGVLTPCISVLSAIGGVKAAAPDAMTEDRIVWLAVAILILLFMFQRFGTEKVGYTFAPILCLWFVLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="30495" PGL_stop="25079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30495" e_stop="30007"/>
            <exon e_start="29592" e_stop="29532"/>
            <exon e_start="29430" e_stop="29361"/>
            <exon e_start="28906" e_stop="28652"/>
            <exon e_start="28492" e_stop="28425"/>
            <exon e_start="28337" e_stop="28228"/>
            <exon e_start="27798" e_stop="27758"/>
            <exon e_start="27665" e_stop="27517"/>
            <exon e_start="26620" e_stop="26267"/>
            <exon e_start="25995" e_stop="25625"/>
            <exon e_start="25101" e_stop="25079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.579" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.045" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30495" e_stop="30007" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30006" i_stop="29593" i_length="414"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29592" e_stop="29532" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.896">
            <gDNA_intron_boundary i_start="29531" i_stop="29431" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29430" e_stop="29361" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="29360" i_stop="28907" i_length="454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28906" e_stop="28652" e_length="255"/>
          </exon>
          <intron i_serial="4" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="28651" i_stop="28493" i_length="159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28492" e_stop="28425" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.579">
            <gDNA_intron_boundary i_start="28424" i_stop="28338" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28337" e_stop="28228" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28227" i_stop="27799" i_length="429"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27798" e_stop="27758" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.970">
            <gDNA_intron_boundary i_start="27757" i_stop="27666" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27665" e_stop="27517" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.045" acc_prob="0.890">
            <gDNA_intron_boundary i_start="27516" i_stop="26621" i_length="896"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26620" e_stop="26267" e_length="354"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="25995" e_stop="25625" e_length="371"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25624" i_stop="25102" i_length="523"/>
          </intron>
          <exon e_serial="11" e_score="0.826">
            <gDNA_exon_boundary e_start="25101" e_stop="25079" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30495" stop="30007"/>
              <exon start="29592" stop="29532"/>
              <exon start="29430" stop="29361"/>
              <exon start="28906" stop="28652"/>
              <exon start="28492" stop="28425"/>
              <exon start="28337" stop="28228"/>
              <exon start="27798" stop="27758"/>
              <exon start="27665" stop="27517"/>
              <exon start="26620" stop="26267"/>
              <exon start="25995" stop="25625"/>
              <exon start="25101" stop="25079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30495" stop="30007"/>
              <exon start="29592" stop="29532"/>
              <exon start="29430" stop="29361"/>
              <exon start="28906" stop="28652"/>
              <exon start="28492" stop="28425"/>
              <exon start="28337" stop="28228"/>
              <exon start="27798" stop="27758"/>
              <exon start="27665" stop="27517"/>
              <exon start="26620" stop="26267"/>
              <exon start="25995" stop="25626"/>
              <exon start="25101" stop="25079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26580" stop="26267"/>
              <exon start="25995" stop="25678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26267"/>
              <exon start="25995" stop="25852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26267"/>
              <exon start="25995" stop="25853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATGAAATTTTTCCAAAATATAATATGAACCCAATTATATAAACCCGCTCAAATTTGAAATCTCCCCAAATCCCCATTTCTGACACCATTACAGAGGTGAAGCACCGAGCTCGAACTCTCTCCAGATTCTCTCTACAAGAAGATCCATTTCCAGCTGATGGAGAGGAAAACTCCAAATAGAACAAGGAGGAAGCAGAGAAGCAACCAAAAAAGCAAGAAGAGGATGAACAAGGGTTCACTGTCTAGGCATTTCACTGTTGGGATTGCAAAACCTCCGCTTCCTAATCAACAACAGCTTCATTCCTCACTTTCTAATGTTACTTTACCGAATCCTTCTAGATTCCAGAAACTTCTGGATTCTGATGACCTTCCGCCAGCTCAATCTCAGTTCTCTTCAGTTTTGCCGTTGAATCTCGATGCTGATGATGATGCCGATGTTGCCGATGTTGCTGAAAAGGACTTCATTCTCAGTCAAGATTTCTTCTG : TACCCCGGATTATCTAACGCCAGATGCACCTGCAATTTGTAATGGGCTTGATGGTGATAAG : GATGATTATACTCCTTGTCCCAAATCACCCGAGAAGCTTCTAAGTGTATCAAGAAAGAGGCCGCGACTAG : CGTCGGTAAGGCCTTTTAGTTCCGATTTATCTGGACAGCAGCAGCCAGTAGATATTCCTACAGATACTTTTGGGACAGACGAAATGAAATCAGAAAAGATAAGCGAGTCAGAAAAGGGTCCCAGTTATGTGTCACAATCTGCTATTGCTTTAAGATATCGAGTCATGCCTCCTCCGTGCATTAGAAACCCTTATCTCGGGGATGCTTCCGAGATAGATGCTGATCCTTTTGGTAACAGGAGATCCAAGTACCCAG : GTTTTAACCCTGCAATTTCTGGTAATGATGGTCTGTCACGGTATCGTACTGATTTCCACGAAATTGAG : CAAATCGGTAGTGGGAACTTCAGCCGTGTTTTCAAAGTCTTTAAGAGAATTGATGGATGTATGTATGCAGTGAAACATAGCACTAAACAGTTACATCAAGACACAGATAG : GAGACAGGCTTTGATGGAAGTGCAAGCATTGGCTGCTTTAG : GACCTCATGAGAACGTAGTTGGTTATTATTCATCTTGGTTTGAAAATGAACACCTTTACATCCAAATGGAGCTCTGTGACCACAGCTTATCCAATAAAAAATATTGTAAACTATTTTCGGAGGTAGAAGTTTTGGAAGCAATGTATCAG : GTAGCCAACGCATTGCAGTTTATACATCAGAGAGGGGTCGCTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG : GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAA : CAAAAAAAAAAAAAAAAGGACAA</gDNA_template>
            <first_frame> I  Y  E  I  F  P  K  Y  N  M  N  P  I  I  *  T  R  S  N  L  K  S  P  Q  I  P  I  S  D  T  I  T  E  V  K  H  R  A  R  T  L  S  R  F  S  L  Q  E  D  P  F  P  A  D  G  E  E  N  S  K  *  N  K  E  E  A  E  K  Q  P  K  K  Q  E  E  D  E  Q  G  F  T  V  *  A  F  H  C  W  D  C  K  T  S  A  S  *  S  T  T  A  S  F  L  T  F  *  C  Y  F  T  E  S  F  *  I  P  E  T  S  G  F  *  *  P  S  A  S  S  I  S  V  L  F  S  F  A  V  E  S  R  C  *  *  *  C  R  C  C  R  C  C  *  K  G  L  H  S  Q  S  R  F  L  L  :  Y  P  G  L  S  N  A  R  C  T  C  N  L  *  W  A  *  W  *  *   : G  *  L  Y  S  L  S  Q  I  T  R  E  A  S  K  C  I  K  K  E  A  A  T  S :   V  G  K  A  F  *  F  R  F  I  W  T  A  A  A  S  R  Y  S  Y  R  Y  F  W  D  R  R  N  E  I  R  K  D  K  R  V  R  K  G  S  Q  L  C  V  T  I  C  Y  C  F  K  I  S  S  H  A  S  S  V  H  *  K  P  L  S  R  G  C  F  R  D  R  C  *  S  F  W  *  Q  E  I  Q  V  P  R :   F  *  P  C  N  F  W  *  *  W  S  V  T  V  S  Y  *  F  P  R  N  *   : A  N  R  *  W  E  L  Q  P  C  F  Q  S  L  *  E  N  *  W  M  Y  V  C  S  E  T  *  H  *  T  V  T  S  R  H  R  *  :  E  T  G  F  D  G  S  A  S  I  G  C  F  R :   T  S  *  E  R  S  W  L  L  F  I  L  V  *  K  *  T  P  L  H  P  N  G  A  L  *  P  Q  L  I  Q  *  K  I  L  *  T  I  F  G  G  R  S  F  G  S  N  V  S   : G  S  Q  R  I  A  V  Y  T  S  E  R  G  R  S  F  R  C  K  A  R  *  Y  L  C  E  K  W  C  I  *  A  W  *  F  W  M  C  N  S  S  *  *  E  P  A  N  *  R  G  *  C  T  L  Y  A  P  R  N  T  *  *  E  L  *  S  S  *  Q  S  *  H  I  L  L  G  R  C  N  I  *  T  Y  *  R  V  F  T  A  R  I  R  A  S  F  S  K  P  Q  G  G  E  I  A  S  S  S  G  S  L  L  A  I  S  E  S  T  Q   : G  N  D  G  P  R  S  N  T  S  S  F  C  K  R  R  C  G  *  S  N  L  *  K  M  A  K  K  F  Q  Q  V  D  I  H  V  N  H  C  F  L  G  F  V  D  C  Y  F  C  Q  R  S  R  I  Q  S  C  S  I  S  C  S  I  L  V  L  T  Y  S  H  F  C  K  *  R  *  S  F  M  H  Q  I  F  P  F  *  W  C  H  F  C  Q  I  L  Y  Q  E  C  N  V  V  S  *  L  T  C  K  L  W  F  V  C  Q  N  M  V  F  G  G  F  *  A  D  *  :  Q  K  K  K  K  K  D   </first_frame>
            <second_frame>  Y  M  K  F  F  Q  N  I  I  *  T  Q  L  Y  K  P  A  Q  I  *  N  L  P  K  S  P  F  L  T  P  L  Q  R  *  S  T  E  L  E  L  S  P  D  S  L  Y  K  K  I  H  F  Q  L  M  E  R  K  T  P  N  R  T  R  R  K  Q  R  S  N  Q  K  S  K  K  R  M  N  K  G  S  L  S  R  H  F  T  V  G  I  A  K  P  P  L  P  N  Q  Q  Q  L  H  S  S  L  S  N  V  T  L  P  N  P  S  R  F  Q  K  L  L  D  S  D  D  L  P  P  A  Q  S  Q  F  S  S  V  L  P  L  N  L  D  A  D  D  D  A  D  V  A  D  V  A  E  K  D  F  I  L  S  Q  D  F  F  C :   T  P  D  Y  L  T  P  D  A  P  A  I  C  N  G  L  D  G  D  K  :  D  D  Y  T  P  C  P  K  S  P  E  K  L  L  S  V  S  R  K  R  P  R  L   : A  S  V  R  P  F  S  S  D  L  S  G  Q  Q  Q  P  V  D  I  P  T  D  T  F  G  T  D  E  M  K  S  E  K  I  S  E  S  E  K  G  P  S  Y  V  S  Q  S  A  I  A  L  R  Y  R  V  M  P  P  P  C  I  R  N  P  Y  L  G  D  A  S  E  I  D  A  D  P  F  G  N  R  R  S  K  Y  P   : G  F  N  P  A  I  S  G  N  D  G  L  S  R  Y  R  T  D  F  H  E  I  E  :  Q  I  G  S  G  N  F  S  R  V  F  K  V  F  K  R  I  D  G  C  M  Y  A  V  K  H  S  T  K  Q  L  H  Q  D  T  D  R :   R  Q  A  L  M  E  V  Q  A  L  A  A  L   : G  P  H  E  N  V  V  G  Y  Y  S  S  W  F  E  N  E  H  L  Y  I  Q  M  E  L  C  D  H  S  L  S  N  K  K  Y  C  K  L  F  S  E  V  E  V  L  E  A  M  Y  Q  :  V  A  N  A  L  Q  F  I  H  Q  R  G  V  A  H  L  D  V  K  P  D  N  I  Y  V  K  N  G  V  Y  K  L  G  D  F  G  C  A  T  L  L  D  K  S  Q  P  I  E  E  G  D  A  R  Y  M  P  Q  E  I  L  N  E  N  Y  D  H  L  D  K  V  D  I  F  S  L  G  A  A  I  Y  E  L  I  R  G  S  S  L  P  E  S  G  P  H  F  L  N  L  R  E  G  K  L  P  L  L  P  G  H  S  L  Q  F  Q  N  L  L  K  :  A  M  M  D  P  D  P  T  R  R  P  S  A  K  G  V  V  D  N  P  I  F  E  R  W  Q  R  N  S  N  K  *  I  S  M  *  I  T  V  F  W  D  L  S  I  A  T  F  A  K  D  P  E  F  K  A  A  V  S  H  A  A  F  W  C  *  P  I  A  I  S  V  N  R  D  K  A  S  C  T  K  F  S  H  F  D  G  A  T  F  A  K  Y  Y  I  K  N  V  M  L  Y  P  N  *  P  A  N  C  G  L  Y  V  K  I  W  Y  L  V  A  F  K  L  I  N :   K  K  K  K  K  R  T  </second_frame>
            <third_frame>   I  *  N  F  S  K  I  *  Y  E  P  N  Y  I  N  P  L  K  F  E  I  S  P  N  P  H  F  *  H  H  Y  R  G  E  A  P  S  S  N  S  L  Q  I  L  S  T  R  R  S  I  S  S  *  W  R  G  K  L  Q  I  E  Q  G  G  S  R  E  A  T  K  K  A  R  R  G  *  T  R  V  H  C  L  G  I  S  L  L  G  L  Q  N  L  R  F  L  I  N  N  S  F  I  P  H  F  L  M  L  L  Y  R  I  L  L  D  S  R  N  F  W  I  L  M  T  F  R  Q  L  N  L  S  S  L  Q  F  C  R  *  I  S  M  L  M  M  M  P  M  L  P  M  L  L  K  R  T  S  F  S  V  K  I  S  S   : V  P  R  I  I  *  R  Q  M  H  L  Q  F  V  M  G  L  M  V  I  R :   M  I  I  L  L  V  P  N  H  P  R  S  F  *  V  Y  Q  E  R  G  R  D  *  :  R  R  *  G  L  L  V  P  I  Y  L  D  S  S  S  Q  *  I  F  L  Q  I  L  L  G  Q  T  K  *  N  Q  K  R  *  A  S  Q  K  R  V  P  V  M  C  H  N  L  L  L  L  *  D  I  E  S  C  L  L  R  A  L  E  T  L  I  S  G  M  L  P  R  *  M  L  I  L  L  V  T  G  D  P  S  T  Q  :  V  L  T  L  Q  F  L  V  M  M  V  C  H  G  I  V  L  I  S  T  K  L  S :   K  S  V  V  G  T  S  A  V  F  S  K  S  L  R  E  L  M  D  V  C  M  Q  *  N  I  A  L  N  S  Y  I  K  T  Q  I   : G  D  R  L  *  W  K  C  K  H  W  L  L  *  :  D  L  M  R  T  *  L  V  I  I  H  L  G  L  K  M  N  T  F  T  S  K  W  S  S  V  T  T  A  Y  P  I  K  N  I  V  N  Y  F  R  R  *  K  F  W  K  Q  C  I  R :   *  P  T  H  C  S  L  Y  I  R  E  G  S  L  I  *  M  *  S  Q  I  I  F  M  *  K  M  V  Y  I  S  L  V  I  L  D  V  Q  L  F  L  I  R  A  S  Q  L  K  R  V  M  H  V  I  C  P  K  K  Y  L  M  R  T  M  I  I  L  T  K  L  T  Y  S  P  W  A  L  Q  Y  M  N  L  L  E  G  L  H  C  Q  N  Q  G  L  I  F  *  T  S  G  R  G  N  C  L  F  F  R  V  T  P  C  N  F  R  I  Y  S  R :   Q  *  W  T  Q  I  Q  H  V  V  L  L  Q  K  A  L  W  I  I  Q  S  L  K  D  G  K  E  I  P  T  S  R  Y  P  C  K  S  L  F  S  G  I  C  R  L  L  L  L  P  K  I  Q  N  S  K  L  Q  Y  L  M  Q  H  S  G  V  D  L  *  P  F  L  *  I  E  I  K  L  H  A  P  N  F  P  I  L  M  V  P  L  L  P  N  I  I  S  R  M  *  C  C  I  L  I  D  L  Q  T  V  V  C  M  S  K  Y  G  I  W  W  L  L  S  *  L   : T  K  K  K  K  K  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30392" stop="30007"/>
                    <exon start="29592" stop="29532"/>
                    <exon start="29430" stop="29361"/>
                    <exon start="28906" stop="28652"/>
                    <exon start="28492" stop="28425"/>
                    <exon start="28337" stop="28228"/>
                    <exon start="27798" stop="27758"/>
                    <exon start="27665" stop="27517"/>
                    <exon start="26620" stop="26267"/>
                    <exon start="25995" stop="25900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STELELSPDSLYKKIHFQLMERKTPNRTRRKQRSNQKSKKRMNKGSLSRHFTVGIAKPPLPNQQQLHSSLSNVTLPNPSRFQKLLDSDDLPPAQSQFSSVLPLNLDADDDADVADVAEKDFILSQDFFCTPDYLTPDAPAICNGLDGDKDDYTPCPKSPEKLLSVSRKRPRLASVRPFSSDLSGQQQPVDIPTDTFGTDEMKSEKISESEKGPSYVSQSAIALRYRVMPPPCIRNPYLGDASEIDADPFGNRRSKYPGFNPAISGNDGLSRYRTDFHEIEQIGSGNFSRVFKVFKRIDGCMYAVKHSTKQLHQDTDRRQALMEVQALAALGPHENVVGYYSSWFENEHLYIQMELCDHSLSNKKYCKLFSEVEVLEAMYQVANALQFIHQRGVAHLDVKPDNIYVKNGVYKLGDFGCATLLDKSQPIEEGDARYMPQEILNENYDHLDKVDIFSLGAAIYELIRGSSLPESGPHFLNLREGKLPLLPGHSLQFQNLLKAMMDPDPTRRPSAKGVVDNPIFERWQRNSNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26580" e_stop="26267"/>
            <exon e_start="25995" e_stop="25602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26580" e_stop="26267" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="26266" i_stop="25996" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="25995" e_stop="25602" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26580" stop="26267"/>
              <exon start="25995" stop="25678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26267"/>
              <exon start="25995" stop="25852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26267"/>
              <exon start="25995" stop="25853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26469" stop="26267"/>
              <exon start="25995" stop="25602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTTATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCTCCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTCATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTCAGAATCTACTCAAG : GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCGTTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGTAAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAGCTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATAAAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCAAGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGTATTTGGTGGCTTTTAAGCTGATTAATTCAGTATTGGTTTTTGGTTTTG</gDNA_template>
            <first_frame> L  I  *  M  *  S  Q  I  I  F  M  *  K  M  V  Y  I  S  L  V  I  L  D  V  Q  L  F  L  I  R  A  S  Q  L  K  R  V  M  H  V  I  C  P  K  K  Y  L  M  R  T  M  I  I  L  T  K  L  T  Y  S  P  W  A  L  Q  Y  M  N  L  L  E  G  L  H  C  Q  N  Q  G  L  I  F  *  T  S  G  R  G  N  C  L  F  F  R  V  T  P  C  N  F  R  I  Y  S  R :   Q  *  W  T  Q  I  Q  H  V  V  L  L  Q  K  A  L  W  I  I  Q  S  L  K  D  G  K  E  I  P  T  S  R  Y  P  C  K  S  L  F  S  G  I  C  R  L  L  L  L  P  K  I  Q  N  S  K  L  Q  Y  L  M  Q  H  S  G  V  D  L  *  P  F  L  *  I  E  I  K  L  H  A  P  N  F  P  I  L  M  V  P  L  L  P  N  I  I  S  R  M  *  C  C  I  L  I  D  L  Q  T  V  V  C  M  S  K  Y  G  I  W  W  L  L  S  *  L  I  Q  Y  W  F  L  V  L </first_frame>
            <second_frame>  S  F  R  C  K  A  R  *  Y  L  C  E  K  W  C  I  *  A  W  *  F  W  M  C  N  S  S  *  *  E  P  A  N  *  R  G  *  C  T  L  Y  A  P  R  N  T  *  *  E  L  *  S  S  *  Q  S  *  H  I  L  L  G  R  C  N  I  *  T  Y  *  R  V  F  T  A  R  I  R  A  S  F  S  K  P  Q  G  G  E  I  A  S  S  S  G  S  L  L  A  I  S  E  S  T  Q   : G  N  D  G  P  R  S  N  T  S  S  F  C  K  R  R  C  G  *  S  N  L  *  K  M  A  K  K  F  Q  Q  V  D  I  H  V  N  H  C  F  L  G  F  V  D  C  Y  F  C  Q  R  S  R  I  Q  S  C  S  I  S  C  S  I  L  V  L  T  Y  S  H  F  C  K  *  R  *  S  F  M  H  Q  I  F  P  F  *  W  C  H  F  C  Q  I  L  Y  Q  E  C  N  V  V  S  *  L  T  C  K  L  W  F  V  C  Q  N  M  V  F  G  G  F  *  A  D  *  F  S  I  G  F  W  F   </second_frame>
            <third_frame>   H  L  D  V  K  P  D  N  I  Y  V  K  N  G  V  Y  K  L  G  D  F  G  C  A  T  L  L  D  K  S  Q  P  I  E  E  G  D  A  R  Y  M  P  Q  E  I  L  N  E  N  Y  D  H  L  D  K  V  D  I  F  S  L  G  A  A  I  Y  E  L  I  R  G  S  S  L  P  E  S  G  P  H  F  L  N  L  R  E  G  K  L  P  L  L  P  G  H  S  L  Q  F  Q  N  L  L  K  :  A  M  M  D  P  D  P  T  R  R  P  S  A  K  G  V  V  D  N  P  I  F  E  R  W  Q  R  N  S  N  K  *  I  S  M  *  I  T  V  F  W  D  L  S  I  A  T  F  A  K  D  P  E  F  K  A  A  V  S  H  A  A  F  W  C  *  P  I  A  I  S  V  N  R  D  K  A  S  C  T  K  F  S  H  F  D  G  A  T  F  A  K  Y  Y  I  K  N  V  M  L  Y  P  N  *  P  A  N  C  G  L  Y  V  K  I  W  Y  L  V  A  F  K  L  I  N  S  V  L  V  F  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26578" stop="26267"/>
                    <exon start="25995" stop="25900"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLDVKPDNIYVKNGVYKLGDFGCATLLDKSQPIEEGDARYMPQEILNENYDHLDKVDIFSLGAAIYELIRGSSLPESGPHFLNLREGKLPLLPGHSLQFQNLLKAMMDPDPTRRPSAKGVVDNPIFERWQRNSNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="32178" PGL_stop="34913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32188" e_stop="32272"/>
            <exon e_start="32448" e_stop="32478"/>
            <exon e_start="32586" e_stop="32647"/>
            <exon e_start="33102" e_stop="33141"/>
            <exon e_start="33252" e_stop="33307"/>
            <exon e_start="33947" e_stop="34162"/>
            <exon e_start="34268" e_stop="34421"/>
            <exon e_start="34791" e_stop="34913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.950" e_score="0.965"/>
          <exon-intron don_prob="0.582" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.012" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="32188" e_stop="32272" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.950">
            <gDNA_intron_boundary i_start="32273" i_stop="32447" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32448" e_stop="32478" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.582" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32479" i_stop="32585" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32586" e_stop="32647" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="32648" i_stop="33101" i_length="454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33102" e_stop="33141" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.954">
            <gDNA_intron_boundary i_start="33142" i_stop="33251" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33252" e_stop="33307" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.012">
            <gDNA_intron_boundary i_start="33308" i_stop="33946" i_length="639"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="33947" e_stop="34162" e_length="216"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="34163" i_stop="34267" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34268" e_stop="34421" e_length="154"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34422" i_stop="34790" i_length="369"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34791" e_stop="34913" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32188" stop="32272"/>
              <exon start="32448" stop="32478"/>
              <exon start="32586" stop="32647"/>
              <exon start="33102" stop="33141"/>
              <exon start="33252" stop="33307"/>
              <exon start="33947" stop="34162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33978" stop="34162"/>
              <exon start="34268" stop="34421"/>
              <exon start="34791" stop="34913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAG : GAAAAGGAAGATTCGAACCAGAGTTTTTCCG : AAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG : GGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG : ATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTGGTACAG : AGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTCTGATGATGAG : ATGAGGCCTTCTACTGATGGAAAATTCAAAAGAGATGGTAAAAGTACAATGCTTAAAGTAAGCGCAGATTGCAAATCAGGAGCTTTCTTCAATAAAGATGCTGGGTGTTCATCGGTATACGGGGCCTCATCAAAATTGAACAGATCATCTAAAG : GAAGCCCGGGCAAATCTAAGGCCAAATTTTTGTTCCAATCCCGGCCACAGAAGAAAGACTATGCTTTGGTTGTCCATGATAGTTGTGAAACCTGCATGCCCTTATCTGTGCTTCCACTAAATG</gDNA_template>
            <first_frame> P  N  *  L  R  K  I  A  S  L  L  V  T  S  Y  G  R  E  R  F  S  C  *  *  S  I  S  S   : G  K  G  R  F  E  P  E  F  F  R :   R  G  R  Y  G  R  *  R  M  D  D  K  *  Q  L  F  L  R  K  Q   : G  R  F  R  S  P  F  P  A  *  T  A  H  R :   C  Q  K  T  S  S  F  N  R  Y  S  E  L  *  S  A  G  T   : E  A  D  R  F  M  R  R  R  *  R  *  S  S  F  V  *  E  S  G  W  *  P  D  Q  Q  K  *  S  G  W  *  L  H  Q  Q  K  *  S  L  E  G  V  V  L  L  L  R  *  *  I  L  S  R  H  *  N  Y  I  H  L  *  F  R  R  G  N  Y  V  *  *  *   : D  E  A  F  Y  *  W  K  I  Q  K  R  W  *  K  Y  N  A  *  S  K  R  R  L  Q  I  R  S  F  L  Q  *  R  C  W  V  F  I  G  I  R  G  L  I  K  I  E  Q  I  I  *  R :   K  P  G  Q  I  *  G  Q  I  F  V  P  I  P  A  T  E  E  R  L  C  F  G  C  P  *  *  L  *  N  L  H  A  L  I  C  A  S  T  K   </first_frame>
            <second_frame>  P  I  S  S  A  K  L  R  L  C  L  L  P  A  M  E  E  K  G  S  A  A  S  R  V  F  L  Q  :  E  K  E  D  S  N  Q  S  F  S   : E  E  E  D  M  D  D  D  E  W  M  T  N  D  N  C  S  L  E  N  K  :  G  G  L  G  V  L  S  Q  L  E  R  L  T   : D  V  K  R  L  H  H  S  T  D  T  V  N  S  D  Q  L  V  Q  :  R  R  T  G  L  C  E  E  D  D  V  E  V  P  L  F  K  S  Q  D  G  S  L  I  N  K  N  D  Q  D  G  S  F  I  N  K  N  D  H  W  K  A  L  S  C  S  L  D  D  E  F  C  H  V  T  R  I  T  S  T  C  N  S  E  E  E  I  M  S  D  D  E  :  M  R  P  S  T  D  G  K  F  K  R  D  G  K  S  T  M  L  K  V  S  A  D  C  K  S  G  A  F  F  N  K  D  A  G  C  S  S  V  Y  G  A  S  S  K  L  N  R  S  S  K   : G  S  P  G  K  S  K  A  K  F  L  F  Q  S  R  P  Q  K  K  D  Y  A  L  V  V  H  D  S  C  E  T  C  M  P  L  S  V  L  P  L  N  </second_frame>
            <third_frame>   Q  L  A  P  Q  N  C  V  S  A  C  Y  Q  L  W  K  R  K  V  Q  L  L  V  E  Y  F  F  R :   K  R  K  I  R  T  R  V  F  P  :  K  R  K  I  W  T  M  T  N  G  *  Q  M  T  I  V  P  *  K  T  R :   E  V  *  E  S  F  P  S  L  N  G  S  Q  :  M  S  K  D  F  I  I  Q  P  I  Q  *  T  L  I  S  W  Y  R :   G  G  Q  V  Y  A  K  K  M  T  L  K  F  L  C  L  R  V  R  M  V  A  *  S  T  K  M  I  R  M  V  A  S  S  T  K  M  I  I  G  R  R  C  P  A  P  *  M  M  N  F  V  T  S  L  E  L  H  P  L  V  I  Q  K  R  K  L  C  L  M  M  R :   *  G  L  L  L  M  E  N  S  K  E  M  V  K  V  Q  C  L  K  *  A  Q  I  A  N  Q  E  L  S  S  I  K  M  L  G  V  H  R  Y  T  G  P  H  Q  N  *  T  D  H  L  K  :  E  A  R  A  N  L  R  P  N  F  C  S  N  P  G  H  R  R  K  T  M  L  W  L  S  M  I  V  V  K  P  A  C  P  Y  L  C  F  H  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32189" stop="32272"/>
                    <exon start="32448" stop="32478"/>
                    <exon start="32586" stop="32647"/>
                    <exon start="33102" stop="33141"/>
                    <exon start="33252" stop="33307"/>
                    <exon start="33947" stop="34162"/>
                    <exon start="34268" stop="34421"/>
                    <exon start="34791" stop="34912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISSAKLRLCLLPAMEEKGSAASRVFLQEKEDSNQSFSEEEDMDDDEWMTNDNCSLENKGGLGVLSQLERLTDVKRLHHSTDTVNSDQLVQRRTGLCEEDDVEVPLFKSQDGSLINKNDQDGSFINKNDHWKALSCSLDDEFCHVTRITSTCNSEEEIMSDDEMRPSTDGKFKRDGKSTMLKVSADCKSGAFFNKDAGCSSVYGASSKLNRSSKGSPGKSKAKFLFQSRPQKKDYALVVHDSCETCMPLSVLPLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32178" e_stop="32272"/>
            <exon e_start="32448" e_stop="32478"/>
            <exon e_start="32586" e_stop="32647"/>
            <exon e_start="33102" e_stop="33141"/>
            <exon e_start="33252" e_stop="33301"/>
            <exon e_start="33944" e_stop="34162"/>
            <exon e_start="34268" e_stop="34421"/>
            <exon e_start="34791" e_stop="34913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.950" e_score="0.947"/>
          <exon-intron don_prob="0.582" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.216" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="32178" e_stop="32272" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.950">
            <gDNA_intron_boundary i_start="32273" i_stop="32447" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32448" e_stop="32478" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.582" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32479" i_stop="32585" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32586" e_stop="32647" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="32648" i_stop="33101" i_length="454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33102" e_stop="33141" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.954">
            <gDNA_intron_boundary i_start="33142" i_stop="33251" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33252" e_stop="33301" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.216">
            <gDNA_intron_boundary i_start="33302" i_stop="33943" i_length="642"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="33944" e_stop="34162" e_length="219"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="34163" i_stop="34267" i_length="105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34268" e_stop="34421" e_length="154"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34422" i_stop="34790" i_length="369"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34791" e_stop="34913" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32178" stop="32272"/>
              <exon start="32448" stop="32478"/>
              <exon start="32586" stop="32647"/>
              <exon start="33102" stop="33141"/>
              <exon start="33252" stop="33301"/>
              <exon start="33944" stop="34038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33978" stop="34162"/>
              <exon start="34268" stop="34421"/>
              <exon start="34791" stop="34913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACTGTTGCCCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTCAGCTGCTAGTAGAGTATTTCTTCAG : GAAAAGGAAGATTCGAACCAGAGTTTTTCCG : AAGAGGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG : GGAGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG : ATGTCAAAAGACTTCATCATTCAACCGATACAGTGAACTCTGATCAGCTG : CAGAGGCGGACAGGTTTATGCGAAGAAGATGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGATGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTCTGATGATGAG : ATGAGGCCTTCTACTGATGGAAAATTCAAAAGAGATGGTAAAAGTACAATGCTTAAAGTAAGCGCAGATTGCAAATCAGGAGCTTTCTTCAATAAAGATGCTGGGTGTTCATCGGTATACGGGGCCTCATCAAAATTGAACAGATCATCTAAAG : GAAGCCCGGGCAAATCTAAGGCCAAATTTTTGTTCCAATCCCGGCCACAGAAGAAAGACTATGCTTTGGTTGTCCATGATAGTTGTGAAACCTGCATGCCCTTATCTGTGCTTCCACTAAATG</gDNA_template>
            <first_frame> P  L  L  P  Q  L  A  P  Q  N  C  V  S  A  C  Y  Q  L  W  K  R  K  V  Q  L  L  V  E  Y  F  F  R :   K  R  K  I  R  T  R  V  F  P  :  K  R  K  I  W  T  M  T  N  G  *  Q  M  T  I  V  P  *  K  T  R :   E  V  *  E  S  F  P  S  L  N  G  S  Q  :  M  S  K  D  F  I  I  Q  P  I  Q  *  T  L  I  S  C :   R  G  G  Q  V  Y  A  K  K  M  T  L  K  F  L  C  L  R  V  R  M  V  A  *  S  T  K  M  I  R  M  V  A  S  S  T  K  M  I  I  G  R  R  C  P  A  P  *  M  M  N  F  V  T  S  L  E  L  H  P  L  V  I  Q  K  R  K  L  C  L  M  M  R :   *  G  L  L  L  M  E  N  S  K  E  M  V  K  V  Q  C  L  K  *  A  Q  I  A  N  Q  E  L  S  S  I  K  M  L  G  V  H  R  Y  T  G  P  H  Q  N  *  T  D  H  L  K  :  E  A  R  A  N  L  R  P  N  F  C  S  N  P  G  H  R  R  K  T  M  L  W  L  S  M  I  V  V  K  P  A  C  P  Y  L  C  F  H  *  M </first_frame>
            <second_frame>  H  C  C  P  N  *  L  R  K  I  A  S  L  L  V  T  S  Y  G  R  E  R  F  S  C  *  *  S  I  S  S   : G  K  G  R  F  E  P  E  F  F  R :   R  G  R  Y  G  R  *  R  M  D  D  K  *  Q  L  F  L  R  K  Q   : G  R  F  R  S  P  F  P  A  *  T  A  H  R :   C  Q  K  T  S  S  F  N  R  Y  S  E  L  *  S  A   : A  E  A  D  R  F  M  R  R  R  *  R  *  S  S  F  V  *  E  S  G  W  *  P  D  Q  Q  K  *  S  G  W  *  L  H  Q  Q  K  *  S  L  E  G  V  V  L  L  L  R  *  *  I  L  S  R  H  *  N  Y  I  H  L  *  F  R  R  G  N  Y  V  *  *  *   : D  E  A  F  Y  *  W  K  I  Q  K  R  W  *  K  Y  N  A  *  S  K  R  R  L  Q  I  R  S  F  L  Q  *  R  C  W  V  F  I  G  I  R  G  L  I  K  I  E  Q  I  I  *  R :   K  P  G  Q  I  *  G  Q  I  F  V  P  I  P  A  T  E  E  R  L  C  F  G  C  P  *  *  L  *  N  L  H  A  L  I  C  A  S  T  K   </second_frame>
            <third_frame>   T  V  A  P  I  S  S  A  K  L  R  L  C  L  L  P  A  M  E  E  K  G  S  A  A  S  R  V  F  L  Q  :  E  K  E  D  S  N  Q  S  F  S   : E  E  E  D  M  D  D  D  E  W  M  T  N  D  N  C  S  L  E  N  K  :  G  G  L  G  V  L  S  Q  L  E  R  L  T   : D  V  K  R  L  H  H  S  T  D  T  V  N  S  D  Q  L  :  Q  R  R  T  G  L  C  E  E  D  D  V  E  V  P  L  F  K  S  Q  D  G  S  L  I  N  K  N  D  Q  D  G  S  F  I  N  K  N  D  H  W  K  A  L  S  C  S  L  D  D  E  F  C  H  V  T  R  I  T  S  T  C  N  S  E  E  E  I  M  S  D  D  E  :  M  R  P  S  T  D  G  K  F  K  R  D  G  K  S  T  M  L  K  V  S  A  D  C  K  S  G  A  F  F  N  K  D  A  G  C  S  S  V  Y  G  A  S  S  K  L  N  R  S  S  K   : G  S  P  G  K  S  K  A  K  F  L  F  Q  S  R  P  Q  K  K  D  Y  A  L  V  V  H  D  S  C  E  T  C  M  P  L  S  V  L  P  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32180" stop="32272"/>
                    <exon start="32448" stop="32478"/>
                    <exon start="32586" stop="32647"/>
                    <exon start="33102" stop="33141"/>
                    <exon start="33252" stop="33301"/>
                    <exon start="33944" stop="34162"/>
                    <exon start="34268" stop="34421"/>
                    <exon start="34791" stop="34912"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAPISSAKLRLCLLPAMEEKGSAASRVFLQEKEDSNQSFSEEEDMDDDEWMTNDNCSLENKGGLGVLSQLERLTDVKRLHHSTDTVNSDQLQRRTGLCEEDDVEVPLFKSQDGSLINKNDQDGSFINKNDHWKALSCSLDDEFCHVTRITSTCNSEEEIMSDDEMRPSTDGKFKRDGKSTMLKVSADCKSGAFFNKDAGCSSVYGASSKLNRSSKGSPGKSKAKFLFQSRPQKKDYALVVHDSCETCMPLSVLPLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="34936" PGL_stop="40769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38368" e_stop="38548"/>
            <exon e_start="39140" e_stop="39188"/>
            <exon e_start="40107" e_stop="40769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.954" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="38368" e_stop="38548" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39140" e_stop="39188" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918"/>
          </intron>
          <exon e_serial="3" e_score="0.913">
            <gDNA_exon_boundary e_start="40107" e_stop="40769" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38368" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38373" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38373" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38380" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38380" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38443" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429546" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38513" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40263" stop="40769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAAT : CCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTG : AATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATATGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTAAAATATGCTATGTTCCGGTCATTTATAAAATAATTGCGCGCTATATTTTTGTG</gDNA_template>
            <first_frame> S  I  I  I  L  I  Y  Y  S  *  N  N  G  N  Q  S  P  W  Y  P  L  V  N  C  N  H  E  S  Y  F  L  P  Y  *  E  G  F  G  F  *  V  C  L  C  *  Y  G  Q  R  R  T  Q  E  A  P  F  P  L  T  Q   : S  F  C  S  S  T  S  I  *  R  W  R  L  E  A  L  * :   I  K  G  N  H  S  I  H  C  S  G  L  C  *  Q  W  H  S  T  N  T  P  R  S  N  E  N  G  H  Y  V  S  M  D  G  S  R  R  P  K  I  *  T  T  S  F  K  I  N  M  G  A  S  H  K  T  N  D  W  L  G  Q  Y  R  *  C  Y  C  E  G  K  *  R  T  I  V  *  G  S  *  H  L  R  N  S  I  D  R  V  K  I  L  G  W  R  L  L  Y  T  C  *  F  A  S  Y  T  K  Y  I  P  S  D  E  Y  K  S  *  G  T  V  *  F  A  P  S  C  E  C  M  V  C  *  Y  I  G  *  A  S  L  G  E  G  V  G  E  D  A  K  M  K  K  S  R  E  L  M  D  D  H  N  S  Y  I  C  F  C  F  E  A  F  V  S  *  Y  V  V  F  L  V  *  R  C  L  S  C  N  T  I  N  S  D  L  Y  L  C  D  F  T  N  C  T  D  V  K  Y  A  M  F  R  S  F  I  K  *  L  R  A  I  F  L   </first_frame>
            <second_frame>  L  S  *  S  *  F  I  I  L  E  I  M  A  I  K  V  H  G  I  P  L  S  T  A  T  M  R  V  I  S  C  L  I  E  K  D  L  D  F  E  F  V  F  V  D  M  A  K  E  E  H  K  R  H  P  F  L  S  L  N  :  P  F  A  Q  V  P  A  F  E  D  G  D  L  K  L  F   : E  S  R  A  I  T  Q  Y  I  A  Q  V  Y  A  S  N  G  I  Q  L  I  L  Q  D  P  M  K  M  A  I  M  S  V  W  M  E  V  E  G  Q  K  F  E  P  P  A  S  K  L  T  W  E  L  V  I  K  P  M  I  G  L  G  S  T  D  D  V  I  V  K  E  S  E  E  Q  L  S  K  V  L  D  I  Y  E  T  R  L  T  E  S  K  Y  L  G  G  D  S  F  T  L  V  D  L  H  H  I  P  N  I  Y  H  L  M  N  T  K  A  K  A  L  F  D  S  R  P  R  V  S  V  W  C  A  D  I  L  A  R  P  A  W  V  K  G  L  E  K  M  Q  K  *  K  K  V  V  N  *  W  M  I  I  I  H  I  Y  V  F  V  L  K  H  L  C  L  N  M  L  C  F  L  S  E  D  V  C  L  A  I  Q  *  T  V  I  Y  I  Y  V  I  L  L  I  V  L  M  *  N  M  L  C  S  G  H  L  *  N  N  C  A  L  Y  F  C  </second_frame>
            <third_frame>   Y  H  N  P  N  L  L  F  L  K  *  W  Q  S  K  S  M  V  S  P  C  Q  L  Q  P  *  E  L  F  L  A  L  L  R  R  I  W  I  L  S  L  S  L  L  I  W  P  K  K  N  T  R  G  T  L  S  S  H  S  I :   L  L  L  K  Y  Q  H  L  K  M  E  T  *  S  S  L  :  N  Q  G  Q  S  L  N  T  L  L  R  F  M  L  A  M  A  F  N  *  Y  S  K  I  Q  *  K  W  P  L  C  Q  Y  G  W  K  *  K  A  K  N  L  N  H  Q  L  Q  N  *  H  G  S  *  S  *  N  Q  *  L  A  W  A  V  P  M  M  L  L  *  R  K  V  K  N  N  C  L  R  F  L  T  S  T  K  L  D  *  Q  S  Q  N  T  W  V  A  T  P  L  H  L  L  I  C  I  I  Y  Q  I  Y  T  I  *  *  I  Q  K  L  R  H  C  L  I  R  A  L  V  *  V  Y  G  V  L  I  Y  W  L  G  Q  L  G  *  R  G  W  R  R  C  K  N  E  K  K  S  *  I  N  G  *  S  *  F  I  Y  M  F  L  F  *  S  I  C  V  L  I  C  C  V  S  C  L  K  M  F  V  L  Q  Y  N  K  Q  *  S  I  S  M  *  F  Y  *  L  Y  *  C  K  I  C  Y  V  P  V  I  Y  K  I  I  A  R  Y  I  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38384" stop="38548"/>
                    <exon start="39140" stop="39188"/>
                    <exon start="40107" stop="40555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIILEIMAIKVHGIPLSTATMRVISCLIEKDLDFEFVFVDMAKEEHKRHPFLSLNPFAQVPAFEDGDLKLFESRAITQYIAQVYASNGIQLILQDPMKMAIMSVWMEVEGQKFEPPASKLTWELVIKPMIGLGSTDDVIVKESEEQLSKVLDIYETRLTESKYLGGDSFTLVDLHHIPNIYHLMNTKAKALFDSRPRVSVWCADILARPAWVKGLEKMQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34936" e_stop="35113"/>
            <exon e_start="35230" e_stop="35361"/>
            <exon e_start="35440" e_stop="35561"/>
            <exon e_start="35682" e_stop="35773"/>
            <exon e_start="35843" e_stop="35934"/>
            <exon e_start="37630" e_stop="37721"/>
            <exon e_start="38415" e_stop="38548"/>
            <exon e_start="39140" e_stop="39188"/>
            <exon e_start="40107" e_stop="40769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.275" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34936" e_stop="35113" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.823">
            <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35230" e_stop="35361" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.829" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35440" e_stop="35561" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35682" e_stop="35773" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.275" acc_prob="0.953">
            <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35843" e_stop="35934" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35935" i_stop="37629" i_length="1695"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37630" e_stop="37721" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37722" i_stop="38414" i_length="693"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38415" e_stop="38548" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38549" i_stop="39139" i_length="591"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39140" e_stop="39188" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39189" i_stop="40106" i_length="918"/>
          </intron>
          <exon e_serial="9" e_score="0.913">
            <gDNA_exon_boundary e_start="40107" e_stop="40769" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34936" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34936" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34950" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34950" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35441" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35934"/>
              <exon start="37630" stop="37721"/>
              <exon start="38415" stop="38514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38443" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429546" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38513" stop="38548"/>
              <exon start="39140" stop="39188"/>
              <exon start="40107" stop="40597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40263" stop="40769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG : CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT : GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG : TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG : GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAG : GAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAG : TCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAAT : CCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTG : AATCAAGGGCAATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGATCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACCACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTACCGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGAAACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCATCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCGCCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTTGGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATATGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTGTCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTAAAATATGCTATGTTCCGGTCATTTATAAAATAATTGCGCGCTATATTTTTGTG</gDNA_template>
            <first_frame> K  Y  R  V  T  G  *  L  I  G  E  L  W  W  K  *  S  T  T  V  R  G  E  F  G  L  I  *  S  S  S  C  T  *  S  K  *  A  F  H  G  *  G  S  G  S  L  S  A  Y  K  F  L  T  R  Q  S  *  N   : A  A  N  K  N  T  W  I  T  V  L  T  E  E  K  L  I  A  A  W  *  Q  K  H  E  Q  W  R  T  T  *  G  T  R  *  *  S  I  *  *  *  G  C  K   : *  S  S  P  D  S  E  V  C  Y  T  S  E  D  H  G  *  P  I  S  S  S  V  R  S  C  I  H  K  *  E  A  M  Y  C  K  A  *  A  I  W  :  F  I  W  K  V  A  A  R  D  A  M  *  K  G  Q  R  Y  I  F  F  G  E  V  T  N  T  C  C  F  K  W :   C  R  K  L  H  *  C  E  N  F  V  K  F  F  G  G  Q  A  D  C  L  F  L  C  F  T  W  R  *  R   : G  R  R  Y  M  *  T  R  K  T  R  P  S  F  C  V  H  I  S  L  R  F  S  L  W  I  T  F  Y  T  K  :  S  M  V  S  P  C  Q  L  Q  P  *  E  L  F  L  A  L  L  R  R  I  W  I  L  S  L  S  L  L  I  W  P  K  K  N  T  R  G  T  L  S  S  H  S  I :   L  L  L  K  Y  Q  H  L  K  M  E  T  *  S  S  L  :  N  Q  G  Q  S  L  N  T  L  L  R  F  M  L  A  M  A  F  N  *  Y  S  K  I  Q  *  K  W  P  L  C  Q  Y  G  W  K  *  K  A  K  N  L  N  H  Q  L  Q  N  *  H  G  S  *  S  *  N  Q  *  L  A  W  A  V  P  M  M  L  L  *  R  K  V  K  N  N  C  L  R  F  L  T  S  T  K  L  D  *  Q  S  Q  N  T  W  V  A  T  P  L  H  L  L  I  C  I  I  Y  Q  I  Y  T  I  *  *  I  Q  K  L  R  H  C  L  I  R  A  L  V  *  V  Y  G  V  L  I  Y  W  L  G  Q  L  G  *  R  G  W  R  R  C  K  N  E  K  K  S  *  I  N  G  *  S  *  F  I  Y  M  F  L  F  *  S  I  C  V  L  I  C  C  V  S  C  L  K  M  F  V  L  Q  Y  N  K  Q  *  S  I  S  M  *  F  Y  *  L  Y  *  C  K  I  C  Y  V  P  V  I  Y  K  I  I  A  R  Y  I  F  V </first_frame>
            <second_frame>  N  I  E  S  L  D  D  L  L  E  N  Y  G  G  N  E  V  Q  Q  F  E  E  N  L  V  S  S  E  V  A  V  V  H  D  P  N  E  H  S  M  A  E  V  L  D  H  F  Q  H  T  S  S  S  R  G  N  P  K  M  :  L  Q  T  K  I  P  G  S  R  F  L  R  K  R  N  L  L  L  L  G  D  R  N  M  S  N  G  E  Q  P  E  E  L  D  S  D  P  S  S  D  E  D  V  N  :  E  V  P  Q  I  L  K  S  A  I  P  Q  R  T  M  A  D  Q  F  H  L  A  L  G  A  V  S  T  N  E  R  L  C  I  A  R  P  K  Q  F  G :   L  S  G  R  L  Q  H  V  M  Q  C  E  K  D  R  D  T  Y  F  L  E  K  S  Q  T  H  A  A  S  S   : G  A  E  S  F  I  D  V  R  I  L  S  S  S  L  E  A  K  L  T  V  C  F  C  A  L  H  G  D  E  E  :  E  G  G  T  C  E  R  E  R  R  G  H  H  F  V  C  I  F  L  S  D  L  V  F  G  S  H  F  I  P  S :   P  W  Y  P  L  V  N  C  N  H  E  S  Y  F  L  P  Y  *  E  G  F  G  F  *  V  C  L  C  *  Y  G  Q  R  R  T  Q  E  A  P  F  P  L  T  Q   : S  F  C  S  S  T  S  I  *  R  W  R  L  E  A  L  * :   I  K  G  N  H  S  I  H  C  S  G  L  C  *  Q  W  H  S  T  N  T  P  R  S  N  E  N  G  H  Y  V  S  M  D  G  S  R  R  P  K  I  *  T  T  S  F  K  I  N  M  G  A  S  H  K  T  N  D  W  L  G  Q  Y  R  *  C  Y  C  E  G  K  *  R  T  I  V  *  G  S  *  H  L  R  N  S  I  D  R  V  K  I  L  G  W  R  L  L  Y  T  C  *  F  A  S  Y  T  K  Y  I  P  S  D  E  Y  K  S  *  G  T  V  *  F  A  P  S  C  E  C  M  V  C  *  Y  I  G  *  A  S  L  G  E  G  V  G  E  D  A  K  M  K  K  S  R  E  L  M  D  D  H  N  S  Y  I  C  F  C  F  E  A  F  V  S  *  Y  V  V  F  L  V  *  R  C  L  S  C  N  T  I  N  S  D  L  Y  L  C  D  F  T  N  C  T  D  V  K  Y  A  M  F  R  S  F  I  K  *  L  R  A  I  F  L   </second_frame>
            <third_frame>   I  *  S  H  W  M  T  Y  W  R  I  M  V  E  M  K  Y  N  S  S  R  R  I  W  S  H  L  K  *  Q  L  Y  M  I  Q  M  S  I  P  W  L  R  F  W  I  T  F  S  I  Q  V  P  H  E  A  I  L  K  C :   C  K  Q  K  Y  L  D  H  G  S  Y  G  R  E  T  Y  C  C  L  V  T  E  T  *  A  M  A  N  N  L  R  N  *  I  V  I  H  L  V  M  R  M  *  M :   K  F  P  R  F  *  S  L  L  Y  L  R  G  P  W  L  T  N  F  I  *  R  *  E  L  Y  P  Q  M  R  G  Y  V  L  Q  G  L  S  N  L   : V  Y  L  E  G  C  S  T  *  C  N  V  K  R  T  E  I  H  I  F  W  R  S  H  K  H  M  L  L  Q  V  :  V  Q  K  A  S  L  M  *  E  F  C  Q  V  L  W  R  P  S  *  L  F  V  F  V  L  Y  M  E  M  K  R :   K  E  V  H  V  N  E  K  D  E  A  I  I  L  C  A  Y  F  S  Q  I  *  S  L  D  H  I  L  Y  Q   : V  H  G  I  P  L  S  T  A  T  M  R  V  I  S  C  L  I  E  K  D  L  D  F  E  F  V  F  V  D  M  A  K  E  E  H  K  R  H  P  F  L  S  L  N  :  P  F  A  Q  V  P  A  F  E  D  G  D  L  K  L  F   : E  S  R  A  I  T  Q  Y  I  A  Q  V  Y  A  S  N  G  I  Q  L  I  L  Q  D  P  M  K  M  A  I  M  S  V  W  M  E  V  E  G  Q  K  F  E  P  P  A  S  K  L  T  W  E  L  V  I  K  P  M  I  G  L  G  S  T  D  D  V  I  V  K  E  S  E  E  Q  L  S  K  V  L  D  I  Y  E  T  R  L  T  E  S  K  Y  L  G  G  D  S  F  T  L  V  D  L  H  H  I  P  N  I  Y  H  L  M  N  T  K  A  K  A  L  F  D  S  R  P  R  V  S  V  W  C  A  D  I  L  A  R  P  A  W  V  K  G  L  E  K  M  Q  K  *  K  K  V  V  N  *  W  M  I  I  I  H  I  Y  V  F  V  L  K  H  L  C  L  N  M  L  C  F  L  S  E  D  V  C  L  A  I  Q  *  T  V  I  Y  I  Y  V  I  L  L  I  V  L  M  *  N  M  L  C  S  G  H  L  *  N  N  C  A  L  Y  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34937" stop="35113"/>
                    <exon start="35230" stop="35361"/>
                    <exon start="35440" stop="35561"/>
                    <exon start="35682" stop="35773"/>
                    <exon start="35843" stop="35934"/>
                    <exon start="37630" stop="37721"/>
                    <exon start="38415" stop="38469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIESLDDLLENYGGNEVQQFEENLVSSEVAVVHDPNEHSMAEVLDHFQHTSSSRGNPKMLQTKIPGSRFLRKRNLLLLGDRNMSNGEQPEELDSDPSSDEDVNEVPQILKSAIPQRTMADQFHLALGAVSTNERLCIARPKQFGLSGRLQHVMQCEKDRDTYFLEKSQTHAASSGAESFIDVRILSSSLEAKLTVCFCALHGDEEEGGTCERERRGHHFVCIFLSDLVFGSHFIPSPWYPLVNCNHESYFLPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34936" e_stop="35113"/>
            <exon e_start="35230" e_stop="35361"/>
            <exon e_start="35440" e_stop="35561"/>
            <exon e_start="35682" e_stop="35773"/>
            <exon e_start="35843" e_stop="35934"/>
            <exon e_start="37142" e_stop="37275"/>
            <exon e_start="37630" e_stop="37913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.275" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.963"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34936" e_stop="35113" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.823">
            <gDNA_intron_boundary i_start="35114" i_stop="35229" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35230" e_stop="35361" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.829" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35362" i_stop="35439" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35440" e_stop="35561" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35562" i_stop="35681" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35682" e_stop="35773" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.275" acc_prob="0.953">
            <gDNA_intron_boundary i_start="35774" i_stop="35842" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35843" e_stop="35934" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35935" i_stop="37141" i_length="1207"/>
          </intron>
          <exon e_serial="6" e_score="0.963">
            <gDNA_exon_boundary e_start="37142" e_stop="37275" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37276" i_stop="37629" i_length="354"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="37630" e_stop="37913" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34936" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34936" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34937" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35934"/>
              <exon start="37142" stop="37214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34950" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34950" stop="35113"/>
              <exon start="35230" stop="35361"/>
              <exon start="35440" stop="35561"/>
              <exon start="35682" stop="35773"/>
              <exon start="35843" stop="35922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35853" stop="35934"/>
              <exon start="37142" stop="37275"/>
              <exon start="37630" stop="37913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTTCGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCATGGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG : CTGCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGACAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGAGGATGTAAAT : GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGACCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCCTAAGCAATTTGG : TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGATACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG : GTGCAGAAAGCTTCATTGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTTACATGGAGATGAAGAG : GGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGGTAGAAGGGAGTTTACTATCATTTTTAACTCAAGAATTTGTAAAGATGTCGAACTTGAAATAGGGAATGTTATCCGCATACATCAACCTTG : GAAGGAGGTACATGTGAACGAGAAAGACGAGGCCATCATTTTGTGTGCATATTTCTCTCAGATTTAGTCTTTGGATCACATTTTATACCAAGGTAATAGCAAGGTTCCTTGAGATAACTCTATTGTTGTACTTTGCACTTGCCTATATTTTCTAAATAGATAAAAATATAGAAGTCTAATTTATCCATTTTCGCCATAAATATTACTCATGACTACTGCAAAATGTATGAATGCCTTGAAACAAATTGGTTGCATCTGCAAGTTTCCTGGTACATCCCCATGAT</gDNA_template>
            <first_frame> K  Y  R  V  T  G  *  L  I  G  E  L  W  W  K  *  S  T  T  V  R  G  E  F  G  L  I  *  S  S  S  C  T  *  S  K  *  A  F  H  G  *  G  S  G  S  L  S  A  Y  K  F  L  T  R  Q  S  *  N   : A  A  N  K  N  T  W  I  T  V  L  T  E  E  K  L  I  A  A  W  *  Q  K  H  E  Q  W  R  T  T  *  G  T  R  *  *  S  I  *  *  *  G  C  K   : *  S  S  P  D  S  E  V  C  Y  T  S  E  D  H  G  *  P  I  S  S  S  V  R  S  C  I  H  K  *  E  A  M  Y  C  K  A  *  A  I  W  :  F  I  W  K  V  A  A  R  D  A  M  *  K  G  Q  R  Y  I  F  F  G  E  V  T  N  T  C  C  F  K  W :   C  R  K  L  H  *  C  E  N  F  V  K  F  F  G  G  Q  A  D  C  L  F  L  C  F  T  W  R  *  R   : G  F  *  V  P  E  Q  S  S  R  K  E  G  Y  W  *  K  G  V  Y  Y  H  F  *  L  K  N  L  *  R  C  R  T  *  N  R  E  C  Y  P  H  T  S  T  L  :  E  G  G  T  C  E  R  E  R  R  G  H  H  F  V  C  I  F  L  S  D  L  V  F  G  S  H  F  I  P  R  *  *  Q  G  S  L  R  *  L  Y  C  C  T  L  H  L  P  I  F  S  K  *  I  K  I  *  K  S  N  L  S  I  F  A  I  N  I  T  H  D  Y  C  K  M  Y  E  C  L  E  T  N  W  L  H  L  Q  V  S  W  Y  I  P  M   </first_frame>
            <second_frame>  N  I  E  S  L  D  D  L  L  E  N  Y  G  G  N  E  V  Q  Q  F  E  E  N  L  V  S  S  E  V  A  V  V  H  D  P  N  E  H  S  M  A  E  V  L  D  H  F  Q  H  T  S  S  S  R  G  N  P  K  M  :  L  Q  T  K  I  P  G  S  R  F  L  R  K  R  N  L  L  L  L  G  D  R  N  M  S  N  G  E  Q  P  E  E  L  D  S  D  P  S  S  D  E  D  V  N  :  E  V  P  Q  I  L  K  S  A  I  P  Q  R  T  M  A  D  Q  F  H  L  A  L  G  A  V  S  T  N  E  R  L  C  I  A  R  P  K  Q  F  G :   L  S  G  R  L  Q  H  V  M  Q  C  E  K  D  R  D  T  Y  F  L  E  K  S  Q  T  H  A  A  S  S   : G  A  E  S  F  I  D  V  R  I  L  S  S  S  L  E  A  K  L  T  V  C  F  C  A  L  H  G  D  E  E  :  G  S  E  C  L  S  N  P  R  E  R  K  G  T  G  R  R  E  F  T  I  I  F  N  S  R  I  C  K  D  V  E  L  E  I  G  N  V  I  R  I  H  Q  P  W :   K  E  V  H  V  N  E  K  D  E  A  I  I  L  C  A  Y  F  S  Q  I  *  S  L  D  H  I  L  Y  Q  G  N  S  K  V  P  *  D  N  S  I  V  V  L  C  T  C  L  Y  F  L  N  R  *  K  Y  R  S  L  I  Y  P  F  S  P  *  I  L  L  M  T  T  A  K  C  M  N  A  L  K  Q  I  G  C  I  C  K  F  P  G  T  S  P  *  </second_frame>
            <third_frame>   I  *  S  H  W  M  T  Y  W  R  I  M  V  E  M  K  Y  N  S  S  R  R  I  W  S  H  L  K  *  Q  L  Y  M  I  Q  M  S  I  P  W  L  R  F  W  I  T  F  S  I  Q  V  P  H  E  A  I  L  K  C :   C  K  Q  K  Y  L  D  H  G  S  Y  G  R  E  T  Y  C  C  L  V  T  E  T  *  A  M  A  N  N  L  R  N  *  I  V  I  H  L  V  M  R  M  *  M :   K  F  P  R  F  *  S  L  L  Y  L  R  G  P  W  L  T  N  F  I  *  R  *  E  L  Y  P  Q  M  R  G  Y  V  L  Q  G  L  S  N  L   : V  Y  L  E  G  C  S  T  *  C  N  V  K  R  T  E  I  H  I  F  W  R  S  H  K  H  M  L  L  Q  V  :  V  Q  K  A  S  L  M  *  E  F  C  Q  V  L  W  R  P  S  *  L  F  V  F  V  L  Y  M  E  M  K  R :   V  L  S  A  *  A  I  L  E  K  G  R  V  L  V  E  G  S  L  L  S  F  L  T  Q  E  F  V  K  M  S  N  L  K  *  G  M  L  S  A  Y  I  N  L   : G  R  R  Y  M  *  T  R  K  T  R  P  S  F  C  V  H  I  S  L  R  F  S  L  W  I  T  F  Y  T  K  V  I  A  R  F  L  E  I  T  L  L  L  Y  F  A  L  A  Y  I  F  *  I  D  K  N  I  E  V  *  F  I  H  F  R  H  K  Y  Y  S  *  L  L  Q  N  V  *  M  P  *  N  K  L  V  A  S  A  S  F  L  V  H  P  H  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34937" stop="35113"/>
                    <exon start="35230" stop="35361"/>
                    <exon start="35440" stop="35561"/>
                    <exon start="35682" stop="35773"/>
                    <exon start="35843" stop="35934"/>
                    <exon start="37142" stop="37275"/>
                    <exon start="37630" stop="37696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIESLDDLLENYGGNEVQQFEENLVSSEVAVVHDPNEHSMAEVLDHFQHTSSSRGNPKMLQTKIPGSRFLRKRNLLLLGDRNMSNGEQPEELDSDPSSDEDVNEVPQILKSAIPQRTMADQFHLALGAVSTNERLCIARPKQFGLSGRLQHVMQCEKDRDTYFLEKSQTHAASSGAESFIDVRILSSSLEAKLTVCFCALHGDEEGSECLSNPRERKGTGRREFTIIFNSRICKDVELEIGNVIRIHQPWKEVHVNEKDEAIILCAYFSQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="38249" e_stop="38860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38249" e_stop="38860" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38249" stop="38860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGTTTGCTTAGGATTCAAGACTTTTTGGATATATTGATTTTTTTAAGAATGATATCAAGAAAATTTTACCCTATATATACCCCTCCATATAACTTCATTTCATCAACTTGGAGCAATCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCCTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAGTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAATGTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACCATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAATGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTATTTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATAAACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTTGTCATATTGATG</gDNA_template>
            <first_frame> K  G  L  L  R  I  Q  D  F  L  D  I  L  I  F  L  R  M  I  S  R  K  F  Y  P  I  Y  T  P  P  Y  N  F  I  S  S  T  W  S  N  L  S  *  S  *  F  I  I  L  E  I  M  A  I  K  V  H  G  I  P  L  S  T  A  T  M  R  V  I  S  C  L  I  E  K  D  L  D  F  E  F  V  F  V  D  M  A  K  E  E  H  K  R  H  P  F  L  S  L  N  V  S  I  N  N  Y  S  L  C  T  A  T  *  I  F  K  N  C  L  T  I  S  F  K  S  S  F  L  *  T  W  C  Q  V  K  W  C  Q  I  K  W  D  G  *  S  T  L  L  A  C  L  I  K  F  W  R  S  *  K  Y  F  F  L  N  V  Y  F  R  N  L  R  C  S  V  F  F  S  S  S  I  N  *  T  K  N  T  F  L  K  L  W  S  N  T  N  V  A  K  T  F  V  I  L  M </first_frame>
            <second_frame>  K  V  C  L  G  F  K  T  F  W  I  Y  *  F  F  *  E  *  Y  Q  E  N  F  T  L  Y  I  P  L  H  I  T  S  F  H  Q  L  G  A  I  Y  H  N  P  N  L  L  F  L  K  *  W  Q  S  K  S  M  V  S  P  C  Q  L  Q  P  *  E  L  F  L  A  L  L  R  R  I  W  I  L  S  L  S  L  L  I  W  P  K  K  N  T  R  G  T  L  S  S  H  S  M  *  A  *  I  I  T  P  S  V  Q  L  H  K  Y  L  R  I  V  *  P  *  V  S  K  V  L  F  F  K  H  G  V  K  S  N  G  V  K  *  N  G  T  V  E  V  H  Y  *  H  V  *  S  S  F  G  E  A  K  S  I  S  F  *  M  F  I  L  E  I  *  D  V  Q  C  F  L  V  A  A  *  T  E  L  K  T  L  F  *  N  F  G  Q  T  Q  M  L  Q  K  H  L  S  Y  *   </second_frame>
            <third_frame>   R  F  A  *  D  S  R  L  F  G  Y  I  D  F  F  K  N  D  I  K  K  I  L  P  Y  I  Y  P  S  I  *  L  H  F  I  N  L  E  Q  S  I  I  I  L  I  Y  Y  S  *  N  N  G  N  Q  S  P  W  Y  P  L  V  N  C  N  H  E  S  Y  F  L  P  Y  *  E  G  F  G  F  *  V  C  L  C  *  Y  G  Q  R  R  T  Q  E  A  P  F  P  L  T  Q  C  K  H  K  *  L  L  P  L  Y  S  Y  I  N  I  *  E  L  F  D  H  K  F  Q  K  F  F  S  L  N  M  V  S  S  Q  M  V  S  N  K  M  G  R  L  K  Y  I  I  S  M  F  D  Q  V  L  E  K  L  K  V  F  L  F  K  C  L  F  *  K  F  E  M  F  S  V  F  *  *  Q  H  K  L  N  *  K  H  F  F  E  T  L  V  K  H  K  C  C  K  N  I  C  H  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38384" stop="38587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIILEIMAIKVHGIPLSTATMRVISCLIEKDLDFEFVFVDMAKEEHKRHPFLSLNVSINNYSLCTAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="46914" PGL_stop="41443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46914" e_stop="46866"/>
            <exon e_start="46624" e_stop="46578"/>
            <exon e_start="44446" e_stop="44362"/>
            <exon e_start="43331" e_stop="43242"/>
            <exon e_start="43157" e_stop="42902"/>
            <exon e_start="41838" e_stop="41832"/>
            <exon e_start="41485" e_stop="41444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.492" e_score="0.988"/>
          <exon-intron don_prob="0.444" acc_prob="0.156" e_score="0.571"/>
          <exon-only e_score="0.595"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46914" e_stop="46866" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="0.950">
            <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46624" e_stop="46578" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44446" e_stop="44362" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43331" e_stop="43242" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="43157" e_stop="42902" e_length="256"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.492">
            <gDNA_intron_boundary i_start="42901" i_stop="41839" i_length="1063"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="41838" e_stop="41832" e_length="7"/>
          </exon>
          <intron i_serial="6" don_prob="0.444" acc_prob="0.156">
            <gDNA_intron_boundary i_start="41831" i_stop="41486" i_length="346"/>
          </intron>
          <exon e_serial="7" e_score="0.595">
            <gDNA_exon_boundary e_start="41485" e_stop="41444" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46914" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42902"/>
              <exon start="41838" stop="41832"/>
              <exon start="41485" stop="41444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46882" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46601" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTGTCTTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAG : GTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG : GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT : GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGACATTATTCCCAGA : AGAAATG : TAAGAAGAGAAAAAAATAGTAGTATTTCCACACATAAAAAAA</gDNA_template>
            <first_frame> L  F  C  L  L  F  T  I  R  T  S  F  R  E  K  S   : G  F  F  V  E  S  K  S  S  Y  P  I  S  R  C  H  :  V  G  R  G  S  C  *  P  K  G  D  N  G  S  I  L  Q  A  *  V  C  K  A  T  K  G  L  S   : G  M  Y  *  K  D  R  R  *  *  I  R  E  Q  A  L  H  W  T  V  F  *  L  L  A  M  H  *  Q  M   : C  C  P  K  A  I  *  K  T  Q  V  T  W  R  *  V  F  I  H  Y  D  F  I  L  L  F  H  C  *  S  L  C  Y  R  L  A  I  P  S  I  N  L  V  A  A  W  K  I  L  Y  Y  A  H  Y  *  E  V  I  N  K  G  Y  L  W  V  K  F  C  G  H  F  Y  L  V  R  *  F  K  I  R  R  T  L  F  P  E :   E  M  :  *  E  E  K  K  I  V  V  F  P  H  I  K  K </first_frame>
            <second_frame>  S  S  V  F  S  S  P  F  A  P  H  S  E  K  S  Q  :  V  F  L  *  N  Q  S  L  R  I  Q  Y  L  V  A  M :   S  D  E  E  V  V  D  P  K  A  T  M  E  V  S  C  K  P  K  C  V  R  Q  L  K  D  Y  Q  :  A  C  T  R  R  I  E  G  D  E  S  G  S  K  H  C  T  G  Q  Y  F  D  Y  W  Q  C  I  D  K  C  :  V  A  P  K  L  F  E  K  L  K  *  H  G  D  K  C  S  S  I  T  I  L  S  C  F  F  I  V  E  A  C  A  T  D  L  Q  S  L  Q  S  T  *  L  P  H  G  K  F  C  T  M  H  I  I  K  K  *  L  I  K  D  T  Y  G  L  N  F  V  D  T  F  I  W  S  D  D  S  K  S  G  G  H  Y  S  Q   : K  K  C :   K  K  R  K  K  *  *  Y  F  H  T  *  K   </second_frame>
            <third_frame>   L  L  S  S  L  H  H  S  H  L  I  Q  R  K  V  R :   F  F  C  R  I  K  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  Q  W  K  Y  L  A  S  L  S  V  *  G  N  *  R  I  I  R :   H  V  L  E  G  *  K  V  M  N  Q  G  A  S  I  A  L  D  S  I  L  I  I  G  N  A  L  T  N  V :   L  P  Q  S  Y  L  K  N  S  S  N  M  E  I  S  V  H  P  L  R  F  Y  L  A  F  S  L  L  K  P  V  L  Q  T  C  N  P  F  N  Q  L  S  C  R  M  E  N  F  V  L  C  T  L  L  R  S  D  *  *  R  I  L  M  G  *  I  L  W  T  L  L  F  G  Q  M  I  Q  N  P  E  D  I  I  P  R  :  R  N   : V  R  R  E  K  N  S  S  I  S  T  H  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43312" stop="43242"/>
                    <exon start="43157" stop="42983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMNQGASIALDSILIIGNALTNVLPQSYLKNSSNMEISVHPLRFYLAFSLLKPVLQTCNPFNQLSCRMENFVLCTLLRSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46612" stop="46578"/>
                    <exon start="44446" stop="44362"/>
                    <exon start="43331" stop="43242"/>
                    <exon start="43157" stop="43125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSLRIQYLVAMSDEEVVDPKATMEVSCKPKCVRQLKDYQACTRRIEGDESGSKHCTGQYFDYWQCIDKCVAPKLFEKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46904" e_stop="46866"/>
            <exon e_start="46624" e_stop="46578"/>
            <exon e_start="44446" e_stop="44362"/>
            <exon e_start="43331" e_stop="43242"/>
            <exon e_start="43157" e_stop="42814"/>
            <exon e_start="41838" e_stop="41832"/>
            <exon e_start="41485" e_stop="41443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.492" e_score="0.994"/>
          <exon-intron don_prob="0.444" acc_prob="0.156" e_score="0.571"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46904" e_stop="46866" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="0.950">
            <gDNA_intron_boundary i_start="46865" i_stop="46625" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46624" e_stop="46578" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46577" i_stop="44447" i_length="2131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44446" e_stop="44362" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44361" i_stop="43332" i_length="1030"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43331" e_stop="43242" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43241" i_stop="43158" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="43157" e_stop="42814" e_length="344"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.492">
            <gDNA_intron_boundary i_start="42813" i_stop="41839" i_length="975"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="41838" e_stop="41832" e_length="7"/>
          </exon>
          <intron i_serial="6" don_prob="0.444" acc_prob="0.156">
            <gDNA_intron_boundary i_start="41831" i_stop="41486" i_length="346"/>
          </intron>
          <exon e_serial="7" e_score="0.581">
            <gDNA_exon_boundary e_start="41485" e_stop="41443" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46904" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42814"/>
              <exon start="41838" stop="41832"/>
              <exon start="41485" stop="41443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46882" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46866"/>
              <exon start="46624" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46601" stop="46578"/>
              <exon start="44446" stop="44362"/>
              <exon start="43331" stop="43242"/>
              <exon start="43157" stop="42954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCACCATTCGCACCTCATTCAGAGAAAAGTCAG : GTTTTTTTGTAGAATCAAAGTCTTCGTATCCAATATCTCGTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGATTATCAG : GCATGTACTAGAAGGATAGAAGGTGATGAATCAGGGAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT : GTTGCCCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTTATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTAGTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATACTTATGGGTTAAATTTTGTGGACACTTTTATTTGGTCAGATGATTCAAAATCCGGAGGACATTATTCCCAGATTTTTGTTCTCTCTTGCGTTGTTATATGAGCTCCCAGTTACCTAATTTCTTTATGGGAGGAAATATCATAAATCAGTGATTTATATAA : AGAAATG : TAAGAAGAGAAAAAAATAGTAGTATTTCCACACATAAAAAAAT</gDNA_template>
            <first_frame> F  S  S  P  F  A  P  H  S  E  K  S  Q  :  V  F  L  *  N  Q  S  L  R  I  Q  Y  L  V  A  M :   S  D  E  E  V  V  D  P  K  A  T  M  E  V  S  C  K  P  K  C  V  R  Q  L  K  D  Y  Q  :  A  C  T  R  R  I  E  G  D  E  S  G  S  K  H  C  T  G  Q  Y  F  D  Y  W  Q  C  I  D  K  C  :  V  A  P  K  L  F  E  K  L  K  *  H  G  D  K  C  S  S  I  T  I  L  S  C  F  F  I  V  E  A  C  A  T  D  L  Q  S  L  Q  S  T  *  L  P  H  G  K  F  C  T  M  H  I  I  K  K  *  L  I  K  D  T  Y  G  L  N  F  V  D  T  F  I  W  S  D  D  S  K  S  G  G  H  Y  S  Q  I  F  V  L  S  C  V  V  I  *  A  P  S  Y  L  I  S  L  W  E  E  I  S  *  I  S  D  L  Y  K :   E  M  :  *  E  E  K  K  I  V  V  F  P  H  I  K  K  </first_frame>
            <second_frame>  S  L  H  H  S  H  L  I  Q  R  K  V  R :   F  F  C  R  I  K  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  Q  W  K  Y  L  A  S  L  S  V  *  G  N  *  R  I  I  R :   H  V  L  E  G  *  K  V  M  N  Q  G  A  S  I  A  L  D  S  I  L  I  I  G  N  A  L  T  N  V :   L  P  Q  S  Y  L  K  N  S  S  N  M  E  I  S  V  H  P  L  R  F  Y  L  A  F  S  L  L  K  P  V  L  Q  T  C  N  P  F  N  Q  L  S  C  R  M  E  N  F  V  L  C  T  L  L  R  S  D  *  *  R  I  L  M  G  *  I  L  W  T  L  L  F  G  Q  M  I  Q  N  P  E  D  I  I  P  R  F  L  F  S  L  A  L  L  Y  E  L  P  V  T  *  F  L  Y  G  R  K  Y  H  K  S  V  I  Y  I   : K  K  C :   K  K  R  K  K  *  *  Y  F  H  T  *  K  N </second_frame>
            <third_frame>   L  F  T  I  R  T  S  F  R  E  K  S   : G  F  F  V  E  S  K  S  S  Y  P  I  S  R  C  H  :  V  G  R  G  S  C  *  P  K  G  D  N  G  S  I  L  Q  A  *  V  C  K  A  T  K  G  L  S   : G  M  Y  *  K  D  R  R  *  *  I  R  E  Q  A  L  H  W  T  V  F  *  L  L  A  M  H  *  Q  M   : C  C  P  K  A  I  *  K  T  Q  V  T  W  R  *  V  F  I  H  Y  D  F  I  L  L  F  H  C  *  S  L  C  Y  R  L  A  I  P  S  I  N  L  V  A  A  W  K  I  L  Y  Y  A  H  Y  *  E  V  I  N  K  G  Y  L  W  V  K  F  C  G  H  F  Y  L  V  R  *  F  K  I  R  R  T  L  F  P  D  F  C  S  L  L  R  C  Y  M  S  S  Q  L  P  N  F  F  M  G  G  N  I  I  N  Q  *  F  I  *  :  R  N   : V  R  R  E  K  N  S  S  I  S  T  H  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43312" stop="43242"/>
                    <exon start="43157" stop="42983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMNQGASIALDSILIIGNALTNVLPQSYLKNSSNMEISVHPLRFYLAFSLLKPVLQTCNPFNQLSCRMENFVLCTLLRSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46612" stop="46578"/>
                    <exon start="44446" stop="44362"/>
                    <exon start="43331" stop="43242"/>
                    <exon start="43157" stop="43125"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSLRIQYLVAMSDEEVVDPKATMEVSCKPKCVRQLKDYQACTRRIEGDESGSKHCTGQYFDYWQCIDKCVAPKLFEKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="56060" PGL_stop="47050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56050" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56050" e_stop="56012" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="0.906">
            <gDNA_exon_boundary e_start="49683" e_stop="49292" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56050" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56021" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56016" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56016" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417374" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56016" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55827" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49676" stop="49433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACT</gDNA_template>
            <first_frame> L  L  F  A  I  R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  V  R  I  I  E  N  L  L  D  V  I  P  *  W  L  H  G  G  K  R  L  V  L  C  S  L  N  P  A  H  I  L  I  N  E  L  L  *  V  D  R  S  A  N  A  V  S  C  L  F  C  P   </first_frame>
            <second_frame>  S  S  S  P  S  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S  F  E  L  L  R  I  S  W  M  L  F  P  D  G  F  M  G  E  N  V  S  S  C  A  H  *  I  L  R  I  Y  *  *  M  S  C  F  E  *  T  E  V  Q  M  Q  S  A  A  C  S  V  H  </second_frame>
            <third_frame>   P  L  R  H  P  Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I  R  S  N  Y  *  E  S  P  G  C  Y  S  L  M  A  S  W  G  K  T  S  R  L  V  L  T  E  S  C  A  Y  I  D  K  *  V  A  L  S  R  Q  K  C  K  C  S  Q  L  L  V  L  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56035" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49441"/>
            <exon e_start="47956" e_stop="47938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56035" e_stop="56012" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49441" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49440" i_stop="47957" i_length="1484"/>
          </intron>
          <exon e_serial="6" e_score="0.842">
            <gDNA_exon_boundary e_start="47956" e_stop="47938" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49441"/>
              <exon start="47956" stop="47938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55827" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATT : AAAAAAATAAATAATAAAA</gDNA_template>
            <first_frame> R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  V  R  I  :  K  K  I  N  N  K  </first_frame>
            <second_frame>  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S  F  E  L :   K  K  *  I  I  K </second_frame>
            <third_frame>   Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I  R  S  N   : *  K  N  K  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56035" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49453"/>
            <exon e_start="47956" e_stop="47938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56035" e_stop="56012" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49453" e_length="231"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49452" i_stop="47957" i_length="1496"/>
          </intron>
          <exon e_serial="6" e_score="0.842">
            <gDNA_exon_boundary e_start="47956" e_stop="47938" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53193" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49453"/>
              <exon start="47956" stop="47938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTA : AAAAAAATAAATAATAAAA</gDNA_template>
            <first_frame> R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  :  K  K  I  N  N  K  </first_frame>
            <second_frame>  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  * :   K  K  *  I  I  K </second_frame>
            <third_frame>   Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F   : K  K  N  K  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="56035" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49450"/>
            <exon e_start="47968" e_stop="47934"/>
            <exon e_start="47498" e_stop="47471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56035" e_stop="56012" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49450" e_length="234"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49449" i_stop="47969" i_length="1481"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="47968" e_stop="47934" e_length="35"/>
          </exon>
          <intron i_serial="6" don_prob="0.568" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47933" i_stop="47499" i_length="435"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="47498" e_stop="47471" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56031" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49450"/>
              <exon start="47968" stop="47934"/>
              <exon start="47498" stop="47471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTC : AAAATATCCAACAAAAAAATAAATAATAAAATCGC : TGTCGGGTTGGTTTGGTCCCGGGTTGTG</gDNA_template>
            <first_frame> R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  :  K  I  S  N  K  K  I  N  N  K  I  A :   V  G  L  V  W  S  R  V  V </first_frame>
            <second_frame>  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S :   K  Y  P  T  K  K  *  I  I  K  S   : L  S  G  W  F  G  P  G  L   </second_frame>
            <third_frame>   Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I   : Q  N  I  Q  Q  K  N  K  *  *  N  R  :  C  R  V  G  L  V  P  G  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="56035" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49452"/>
            <exon e_start="47969" e_stop="47934"/>
            <exon e_start="47487" e_stop="47459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.000" e_score="0.694"/>
          <exon-only e_score="0.483"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56035" e_stop="56012" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49452" e_length="232"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49451" i_stop="47970" i_length="1482"/>
          </intron>
          <exon e_serial="6" e_score="0.694">
            <gDNA_exon_boundary e_start="47969" e_stop="47934" e_length="36"/>
          </exon>
          <intron i_serial="6" don_prob="0.568" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47933" i_stop="47488" i_length="446"/>
          </intron>
          <exon e_serial="7" e_score="0.483">
            <gDNA_exon_boundary e_start="47487" e_stop="47459" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56031" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49452"/>
              <exon start="47969" stop="47934"/>
              <exon start="47487" stop="47459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTAT : TAAAATATCCAACAAAAAAATAAATAATAAAATCGC : TTTGGTCCCGGGTTGTGTTTCTTTTAGCT</gDNA_template>
            <first_frame> R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L   : L  K  Y  P  T  K  K  *  I  I  K  S   : L  W  S  R  V  V  F  L  L  A </first_frame>
            <second_frame>  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  :  *  N  I  Q  Q  K  N  K  *  *  N  R  :  F  G  P  G  L  C  F  F  *   </second_frame>
            <third_frame>   Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I :   K  I  S  N  K  K  I  N  N  K  I  A :   L  V  P  G  C  V  S  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="56060" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49454"/>
            <exon e_start="47956" e_stop="47934"/>
            <exon e_start="47073" e_stop="47050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.000" e_score="0.696"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56060" e_stop="56012" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49454" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49453" i_stop="47957" i_length="1497"/>
          </intron>
          <exon e_serial="6" e_score="0.696">
            <gDNA_exon_boundary e_start="47956" e_stop="47934" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.568" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47933" i_stop="47074" i_length="860"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="47073" e_stop="47050" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56060" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49454"/>
              <exon start="47956" stop="47934"/>
              <exon start="47073" stop="47050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56035" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTACCGTCTCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTT : AAAAAAATAAATAATAAAATCGC : TAAAAATAATCAAATAAAAAAATA</gDNA_template>
            <first_frame> S  L  P  S  P  L  R  H  P  Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  :  K  K  I  N  N  K  I  A :   K  N  N  Q  I  K  K   </first_frame>
            <second_frame>  L  Y  R  L  L  F  A  I  R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L :   K  K  *  I  I  K  S   : L  K  I  I  K  *  K  N  </second_frame>
            <third_frame>   S  T  V  S  S  S  P  S  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F   : *  K  N  K  *  *  N  R  :  *  K  *  S  N  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="56029" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49467"/>
            <exon e_start="47959" e_stop="47938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56029" e_stop="56012" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49467" e_length="217"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49466" i_stop="47960" i_length="1507"/>
          </intron>
          <exon e_serial="6" e_score="0.818">
            <gDNA_exon_boundary e_start="47959" e_stop="47938" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56024" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49467"/>
              <exon start="47959" stop="47938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGA : AACAAAAAAATAAATAATAAAA</gDNA_template>
            <first_frame> S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L   : K  Q  K  N  K  *  *   </first_frame>
            <second_frame>  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  :  N  K  K  I  N  N  K  </second_frame>
            <third_frame>   I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E :   T  K  K  *  I  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="56029" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49467"/>
            <exon e_start="47101" e_stop="47056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.674"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56029" e_stop="56012" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49467" e_length="217"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49466" i_stop="47102" i_length="2365"/>
          </intron>
          <exon e_serial="6" e_score="0.674">
            <gDNA_exon_boundary e_start="47101" e_stop="47056" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56024" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49467"/>
              <exon start="47101" stop="47056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGA : ATTATTATAACTTGTTTTATAAATAAACTAAAAATAATCAAATAAA</gDNA_template>
            <first_frame> S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L   : N  Y  Y  N  L  F  Y  K  *  T  K  N  N  Q  I   </first_frame>
            <second_frame>  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  :  I  I  I  T  C  F  I  N  K  L  K  I  I  K  *  </second_frame>
            <third_frame>   I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E :   L  L  *  L  V  L  *  I  N  *  K  *  S  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="56026" e_stop="56012"/>
            <exon e_start="55846" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56026" e_stop="56012" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56011" i_stop="55847" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="55846" e_stop="55788" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="49683" e_stop="49429" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56026" stop="56012"/>
              <exon start="55846" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55827" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49676" stop="49433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAGAACAGTCAG : TTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTC</gDNA_template>
            <first_frame> F  *  N  S  Q  :  L  H  L  Q  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  V  R  I  I  E  N  L </first_frame>
            <second_frame>  S  R  T  V  S :   C  T  C  R  *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S  F  E  L  L  R  I   </second_frame>
            <third_frame>   L  E  Q  S   : V  A  L  A  G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I  R  S  N  Y  *  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55846" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQLHLQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="56049" e_stop="56012"/>
            <exon e_start="55834" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49467"/>
            <exon e_start="47956" e_stop="47934"/>
            <exon e_start="47077" e_stop="47050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.000" e_score="0.696"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56049" e_stop="56012" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.916">
            <gDNA_intron_boundary i_start="56011" i_stop="55835" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55834" e_stop="55788" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49467" e_length="217"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49466" i_stop="47957" i_length="1510"/>
          </intron>
          <exon e_serial="6" e_score="0.696">
            <gDNA_exon_boundary e_start="47956" e_stop="47934" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.568" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47933" i_stop="47078" i_length="856"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="47077" e_stop="47050" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56049" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49467"/>
              <exon start="47956" stop="47934"/>
              <exon start="47077" stop="47050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56029" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56012"/>
              <exon start="55834" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTCGCCATCCGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGA : AAAAAAATAAATAATAAAATCGC : AAACTAAAAATAATCAAATAAAAAAATA</gDNA_template>
            <first_frame> S  S  S  P  S  A  A  H  S  R  T  V  R :   *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  :  K  K  I  N  N  K  I  A :   N  *  K  *  S  N  K  K  I </first_frame>
            <second_frame>  P  L  R  H  P  Q  L  I  L  E  Q  S   : G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E :   K  K  *  I  I  K  S   : Q  T  K  N  N  Q  I  K  K   </second_frame>
            <third_frame>   L  F  A  I  R  S  S  F  *  N  S  Q  :  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L   : K  K  N  K  *  *  N  R  :  K  L  K  I  I  K  *  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55834" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="56025" e_stop="56012"/>
            <exon e_start="55846" e_stop="55788"/>
            <exon e_start="53233" e_stop="53149"/>
            <exon e_start="49900" e_stop="49811"/>
            <exon e_start="49683" e_stop="49444"/>
            <exon e_start="48474" e_stop="48459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.751" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56025" e_stop="56012" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56011" i_stop="55847" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55846" e_stop="55788" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55787" i_stop="53234" i_length="2554"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53233" e_stop="53149" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53148" i_stop="49901" i_length="3248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49900" e_stop="49811" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49683" e_stop="49444" e_length="240"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.751">
            <gDNA_intron_boundary i_start="49443" i_stop="48475" i_length="969"/>
          </intron>
          <exon e_serial="6" e_score="0.625">
            <gDNA_exon_boundary e_start="48474" e_stop="48459" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56025" stop="56012"/>
              <exon start="55846" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49444"/>
              <exon start="48474" stop="48459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55827" stop="55788"/>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53233" stop="53149"/>
              <exon start="49900" stop="49811"/>
              <exon start="49683" stop="49445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAGAACAGTCAG : TTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGA : ACAACGAAATTAAATA</gDNA_template>
            <first_frame> S  R  T  V  S :   C  T  C  R  *  F  C  R  I  E  V  F  V  S  N  I  S  L  P   : C  R  T  R  K  L  L  T  Q  R  R  H  *  K  *  V  A  S  L  S  V  *  G  N  *  R  S  I  R :   H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S  F  E :   Q  R  N  *  I </first_frame>
            <second_frame>  L  E  Q  S   : V  A  L  A  G  D  F  A  E  S  K  S  S  S  R  I  S  L  C  H  :  V  G  R  G  S  C  *  P  K  G  D  I  R  S  K  L  Q  A  *  V  C  K  A  T  K  G  V  S   : G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I  R  S   : N  N  E  I  K   </second_frame>
            <third_frame>   *  N  S  Q  :  L  H  L  Q  V  I  L  Q  N  R  S  L  R  L  E  Y  L  F  A  M :   S  D  E  E  V  V  D  P  K  A  T  L  E  V  S  C  K  P  K  C  V  R  Q  L  K  E  Y  Q  :  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  V  R  :  T  T  K  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56020" stop="56012"/>
                    <exon start="55846" stop="55788"/>
                    <exon start="53233" stop="53149"/>
                    <exon start="49900" stop="49811"/>
                    <exon start="49683" stop="49651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQLHLQVILQNRSLRLEYLFAMSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRIEGDESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="49903" e_stop="49811"/>
            <exon e_start="49683" e_stop="49292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="0.989"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="49903" e_stop="49811" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49810" i_stop="49684" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="49683" e_stop="49292" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49903" stop="49811"/>
              <exon start="49683" stop="49292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49676" stop="49433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGCATGTACTAAAAGGATAGAAGGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTCGTTCGAATTATTGAGAATCTCCTGGATGTTATTCCCTGATGGCTTCATGGGGGAAAACGTCTCGTCTTGTGCTCACTGAATCCTGCGCATATATTGATAAATGAGTTGCTTTGAGTAGACAGAAGTGCAAATGCAGTCAGCTGCTTGTTCTGTCCACT</gDNA_template>
            <first_frame> Q  A  C  T  K  R  I  E  G  D  E  S  G  H  K  H  C  T  G  Q  Y  F  D  Y  W  H  C  I  D  K  C  :  V  A  A  K  L  F  D  H  L  K  *  Q  G  Y  K  L  L  I  P  C  N  L  S  S  F  W  L  L  N  K  S  L  P  Y  Y  S  S  L  C  *  R  L  V  T  L  S  I  N  L  V  A  A  W  K  I  L  N  Y  A  H  L  K  K  *  L  I  N  H  T  R  G  L  N  W  T  L  L  F  V  R  I  I  E  N  L  L  D  V  I  P  *  W  L  H  G  G  K  R  L  V  L  C  S  L  N  P  A  H  I  L  I  N  E  L  L  *  V  D  R  S  A  N  A  V  S  C  L  F  C  P   </first_frame>
            <second_frame>  R  H  V  L  K  G  *  K  V  M  N  Q  G  T  N  I  A  L  D  S  I  L  I  I  G  T  A  S  T  N  V :   L  L  R  S  C  L  T  I  S  S  N  K  D  I  S  C  *  S  L  A  I  Y  L  L  F  G  C  *  T  S  H  Y  H  I  I  P  H  C  A  E  D  L  *  P  F  Q  S  T  W  L  L  H  G  K  F  *  T  M  H  I  L  K  S  D  *  *  I  I  L  V  G  *  I  G  P  F  Y  S  F  E  L  L  R  I  S  W  M  L  F  P  D  G  F  M  G  E  N  V  S  S  C  A  H  *  I  L  R  I  Y  *  *  M  S  C  F  E  *  T  E  V  Q  M  Q  S  A  A  C  S  V  H  </second_frame>
            <third_frame>   G  M  Y  *  K  D  R  R  *  *  I  R  A  Q  T  L  H  W  T  V  F  *  L  L  A  L  H  R  Q  M   : C  C  C  E  V  V  *  P  S  Q  V  T  R  I  *  V  V  D  P  L  Q  F  I  F  F  L  V  V  E  Q  V  I  T  I  L  F  L  T  V  L  K  T  C  N  P  F  N  Q  L  G  C  C  M  E  N  F  E  L  C  T  S  *  K  V  I  N  K  S  Y  S  W  V  E  L  D  P  F  I  R  S  N  Y  *  E  S  P  G  C  Y  S  L  M  A  S  W  G  K  T  S  R  L  V  L  T  E  S  C  A  Y  I  D  K  *  V  A  L  S  R  Q  K  C  K  C  S  Q  L  L  V  L  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="51366" e_stop="50591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="51366" e_stop="50591" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51366" stop="50591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="13" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGAACTCAGAGTGGCACAAAAATGTCTTGCATTATGTTATGTTATGTTAGACCTGAAAATTTTATATTTGGAAAATATCAAATATTATGAACATAATATGTACTGATTCCAGGACCTACTACTCTAAGTATGTACTGATTCCAGGATCTACTTCAAATCAATTAAAATAGCAGGTCAAGAGAATTTTCTTTGCATGTTACTCTGATGGGATGAACCAATATAGGGACTTCATCTGTGATTATTTGGTCTCTCTAAGAAGCCCCCCAAAAAAACATGTTTCTGGCCTCCAAATACTTCTCGCTCTTTAGATTAGGCACTCTAGATTTCAGCTGGTTAGCGGTTGCTGGTATTTGTATGATTTTTTGTTTCTTTGTTTTGTGTGTAGCATGTTCTTAGATCCAAGAGGAATTGCAAGACATCAATCAGATTTTCTCTTCAACCTTGCCTTTTATTCTGTTTGATTGCTTTCTATGGGGTCCTTTTGTTGTTTGTATCGCCAACAGTTTGCTGTAAGAGTTTTTGATGATGAGGAGTGTTACTTCAAGGTTTTCTTTCTCCAAGACTCTGATTTCTAATATAATTTTGATGCCATTAAACGTTTTCCAATTTATTTTTTATTTTTCTACTTGTTCTTCATATACTACCTCTGCAAACATCTTTGTAACCAACTTAATTATTTGTGCAACGAATGTGCTTTGGTTGGGGAGTCTGAGTTTCTAACTTTTGGAAGGATTTTGGTCTCTCTTTCTGCGAGAAGTGAAAGATTTTTTTTT</gDNA_template>
            <first_frame> T  R  T  Q  S  G  T  K  M  S  C  I  M  L  C  Y  V  R  P  E  N  F  I  F  G  K  Y  Q  I  L  *  T  *  Y  V  L  I  P  G  P  T  T  L  S  M  Y  *  F  Q  D  L  L  Q  I  N  *  N  S  R  S  R  E  F  S  L  H  V  T  L  M  G  *  T  N  I  G  T  S  S  V  I  I  W  S  L  *  E  A  P  Q  K  N  M  F  L  A  S  K  Y  F  S  L  F  R  L  G  T  L  D  F  S  W  L  A  V  A  G  I  C  M  I  F  C  F  F  V  L  C  V  A  C  S  *  I  Q  E  E  L  Q  D  I  N  Q  I  F  S  S  T  L  P  F  I  L  F  D  C  F  L  W  G  P  F  V  V  C  I  A  N  S  L  L  *  E  F  L  M  M  R  S  V  T  S  R  F  S  F  S  K  T  L  I  S  N  I  I  L  M  P  L  N  V  F  Q  F  I  F  Y  F  S  T  C  S  S  Y  T  T  S  A  N  I  F  V  T  N  L  I  I  C  A  T  N  V  L  W  L  G  S  L  S  F  *  L  L  E  G  F  W  S  L  F  L  R  E  V  K  D  F  F   </first_frame>
            <second_frame>  Q  E  L  R  V  A  Q  K  C  L  A  L  C  Y  V  M  L  D  L  K  I  L  Y  L  E  N  I  K  Y  Y  E  H  N  M  Y  *  F  Q  D  L  L  L  *  V  C  T  D  S  R  I  Y  F  K  S  I  K  I  A  G  Q  E  N  F  L  C  M  L  L  *  W  D  E  P  I  *  G  L  H  L  *  L  F  G  L  S  K  K  P  P  K  K  T  C  F  W  P  P  N  T  S  R  S  L  D  *  A  L  *  I  S  A  G  *  R  L  L  V  F  V  *  F  F  V  S  L  F  C  V  *  H  V  L  R  S  K  R  N  C  K  T  S  I  R  F  S  L  Q  P  C  L  L  F  C  L  I  A  F  Y  G  V  L  L  L  F  V  S  P  T  V  C  C  K  S  F  *  *  *  G  V  L  L  Q  G  F  L  S  P  R  L  *  F  L  I  *  F  *  C  H  *  T  F  S  N  L  F  F  I  F  L  L  V  L  H  I  L  P  L  Q  T  S  L  *  P  T  *  L  F  V  Q  R  M  C  F  G  W  G  V  *  V  S  N  F  W  K  D  F  G  L  S  F  C  E  K  *  K  I  F  F  </second_frame>
            <third_frame>   K  N  S  E  W  H  K  N  V  L  H  Y  V  M  L  C  *  T  *  K  F  Y  I  W  K  I  S  N  I  M  N  I  I  C  T  D  S  R  T  Y  Y  S  K  Y  V  L  I  P  G  S  T  S  N  Q  L  K  *  Q  V  K  R  I  F  F  A  C  Y  S  D  G  M  N  Q  Y  R  D  F  I  C  D  Y  L  V  S  L  R  S  P  P  K  K  H  V  S  G  L  Q  I  L  L  A  L  *  I  R  H  S  R  F  Q  L  V  S  G  C  W  Y  L  Y  D  F  L  F  L  C  F  V  C  S  M  F  L  D  P  R  G  I  A  R  H  Q  S  D  F  L  F  N  L  A  F  Y  S  V  *  L  L  S  M  G  S  F  C  C  L  Y  R  Q  Q  F  A  V  R  V  F  D  D  E  E  C  Y  F  K  V  F  F  L  Q  D  S  D  F  *  Y  N  F  D  A  I  K  R  F  P  I  Y  F  L  F  F  Y  L  F  F  I  Y  Y  L  C  K  H  L  C  N  Q  L  N  Y  L  C  N  E  C  A  L  V  G  E  S  E  F  L  T  F  G  R  I  L  V  S  L  S  A  R  S  E  R  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50850" stop="50644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLMMRSVTSRFSFSKTLISNIILMPLNVFQFIFYFSTCSSYTTSANIFVTNLIICATNVLWLGSLSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="13" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50788" stop="50591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNFDAIKRFPIYFLFFYLFFIYYLCKHLCNQLNYLCNECALVGESEFLTFGRILVSLSARSERFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="60116" PGL_stop="63718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60117" e_stop="60370"/>
            <exon e_start="61938" e_stop="62041"/>
            <exon e_start="62399" e_stop="62534"/>
            <exon e_start="62704" e_stop="62935"/>
            <exon e_start="63082" e_stop="63239"/>
            <exon e_start="63648" e_stop="63718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.176" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60117" e_stop="60370" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61938" e_stop="62041" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62399" e_stop="62534" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.974">
            <gDNA_intron_boundary i_start="62535" i_stop="62703" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62704" e_stop="62935" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.176">
            <gDNA_intron_boundary i_start="62936" i_stop="63081" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63082" e_stop="63239" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.890" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63240" i_stop="63647" i_length="408"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63648" e_stop="63718" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60117" stop="60370"/>
              <exon start="61938" stop="62041"/>
              <exon start="62399" stop="62534"/>
              <exon start="62704" stop="62895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60117" stop="60370"/>
              <exon start="61938" stop="62041"/>
              <exon start="62399" stop="62428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60159" stop="60370"/>
              <exon start="61938" stop="62041"/>
              <exon start="62399" stop="62534"/>
              <exon start="62704" stop="62935"/>
              <exon start="63082" stop="63221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60205" stop="60370"/>
              <exon start="61938" stop="62041"/>
              <exon start="62399" stop="62525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62719" stop="62935"/>
              <exon start="63082" stop="63239"/>
              <exon start="63648" stop="63718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG : GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG : GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAG : GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTG : GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCT : GTTATTTTGGCTGGAAAAAAGGAGACAGTCTCTCTGGCTATGAGAAATGCTGAGAAATTCCGCACTGAGCT</gDNA_template>
            <first_frame> L  T  W  P  L  Q  L  F  P  P  L  I  T  S  I  S  A  S  S  L  H  H  L  P  N  S  Q  S  L  H  N  Y  A  *  I  F  P  R  R  I  V  F  H  S  S  F  V  L  L  L  L  R  P  L  R  H  H  R  R  R  P  K  S  V  N  P  L  P  L  L  S  P  V  S  M  P  A  S  T  S  S  L  K  D  G :   *  K  M  L  L  C  Y  S  T  Q  H  L  L  *  I  P  T  L  R  R  L  K  L  H  F  I  T  K  H  V  A  M  P  T   : G  G  K  E  R  K  L  L  S  V  Y  A  L  L  *  K  S  I  T  L  S  L  A  Q  S  *  M  I  Q  I  W  L  P  S  E  H  C  L  N  L  R  N  Y  R  K  R :   L  G  *  E  G  K  T  *  V  T  V  S  V  E  T  L  S  S  S  V  R  Y  K  H  R  L  G  G  S  E  D  S  F  M  W  H  S  L  L  L  L  E  F  L  H  F  S  L  Y  P  G  *  S  V  Q  F  K  V  E  M  V  L  L  I  *  G  R  L  Q  E  M  L  L  *  M  S  L  :  V  L  L  F  L  W  L  C  C  F  G  T  T  K  K  R  R  N  S  L  H  K  Y  C  V  M  K  H  Y  Q  G  C  L  C  A  F  Q  L  I  G  L  L  N  S  S  S  *  E  T  P  *  G  L :   L  F  W  L  E  K  R  R  Q  S  L  W  L  *  E  M  L  R  N  S  A  L  S  </first_frame>
            <second_frame>  *  H  G  H  Y  N  S  S  L  L  S  S  P  P  F  L  L  L  L  F  I  I  F  Q  I  L  N  H  Y  T  I  M  P  K  F  S  P  E  E  S  Y  F  T  R  H  L  F  F  F  Y  F  A  P  S  A  I  I  V  V  A  P  S  Q  *  T  H  S  H  C  *  V  L  C  Q  C  R  P  R  P  L  L  *  R  T   : G  E  R  C  S  C  A  I  R  H  S  T  Y  F  K  S  Q  P  *  G  G  S  S  C  I  L  *  Q  S  M  L  P  C  L  Q  :  G  G  R  K  E  S  C  *  V  F  T  H  C  F  E  R  V  *  P  *  V  W  H  N  L  K  *  S  R  F  G  F  L  Q  S  I  A  *  I  *  G  T  T  G  R   : G  *  V  R  R  G  R  H  R  L  Q  F  P  *  R  P  *  A  H  Q  *  G  T  S  T  V  *  G  G  Q  K  I  L  L  C  G  I  H  C  C  C  W  N  F  Y  I  F  H  Y  T  Q  V  N  P  C  N  S  R  W  R  W  C  S  *  F  R  G  D  C  R  K  C  C  Y  K  C  R  W :   Y  C  C  F  C  G  F  V  V  L  G  Q  Q  K  R  G  G  T  A  C  T  N  I  A  *  *  N  T  I  K  A  A  F  A  P  F  N  *  *  D  C  *  T  R  P  A  K  R  H  R  E  A   : C  Y  F  G  W  K  K  G  D  S  L  S  G  Y  E  K  C  *  E  I  P  H  *  A </second_frame>
            <third_frame>   D  M  A  I  T  T  L  P  S  S  H  H  L  H  F  C  F  F  S  S  S  S  S  K  F  S  I  T  T  Q  L  C  L  N  F  P  P  K  N  R  I  S  L  V  I  C  S  S  S  T  S  P  P  P  P  S  S  S  S  P  Q  V  S  E  P  T  P  T  A  E  S  C  V  N  A  G  L  D  L  F  S  K  G  R  :  V  K  D  A  L  V  L  F  D  T  A  L  T  L  N  P  N  P  E  E  A  Q  A  A  F  Y  N  K  A  C  C  H  A  Y  R :   G  E  G  K  K  A  A  E  C  L  R  T  A  L  K  E  Y  N  L  K  F  G  T  I  L  N  D  P  D  L  A  S  F  R  A  L  P  E  F  K  E  L  Q  E  E  :  A  R  L  G  G  E  D  I  G  Y  S  F  R  R  D  L  K  L  I  S  E  V  Q  A  P  F  R  G  V  R  R  F  F  Y  V  A  F  I  A  A  A  G  I  S  T  F  F  T  I  P  R  L  I  R  A  I  Q  G  G  D  G  A  P  D  L  G  A  T  A  G  N  A  A  I  N  V  A   : G  I  A  V  F  V  A  L  L  F  W  D  N  K  K  E  E  E  Q  L  A  Q  I  L  R  D  E  T  L  S  R  L  P  L  R  L  S  T  D  R  I  V  E  L  V  Q  L  R  D  T  V  R  P  :  V  I  L  A  G  K  K  E  T  V  S  L  A  M  R  N  A  E  K  F  R  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60119" stop="60370"/>
                    <exon start="61938" stop="62041"/>
                    <exon start="62399" stop="62534"/>
                    <exon start="62704" stop="62935"/>
                    <exon start="63082" stop="63239"/>
                    <exon start="63648" stop="63716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMAITTLPSSHHLHFCFFSSSSSKFSITTQLCLNFPPKNRISLVICSSSTSPPPPSSSSPQVSEPTPTAESCVNAGLDLFSKGRVKDALVLFDTALTLNPNPEEAQAAFYNKACCHAYRGEGKKAAECLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFIAAAGISTFFTIPRLIRAIQGGDGAPDLGATAGNAAINVAGIAVFVALLFWDNKKEEEQLAQILRDETLSRLPLRLSTDRIVELVQLRDTVRPVILAGKKETVSLAMRNAEKFRTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60116" e_stop="60962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60116" e_stop="60962" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60116" stop="60962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACAT</gDNA_template>
            <first_frame> L  D  M  A  I  T  T  L  P  S  S  H  H  L  H  F  C  F  F  S  S  S  S  S  K  F  S  I  T  T  Q  L  C  L  N  F  P  P  K  N  R  I  S  L  V  I  C  S  S  S  T  S  P  P  P  P  S  S  S  S  P  Q  V  S  E  P  T  P  T  A  E  S  C  V  N  A  G  L  D  L  F  S  K  G  R  V  L  S  *  F  C  F  N  F  M  A  E  E  I  P  *  L  L  C  D  C  I  V  F  Q  V  Y  Y  K  Q  *  *  G  L  H  I  H  Y  A  L  *  N  S  S  V  L  L  L  Y  C  Y  F  C  *  F  R  Q  R  V  C  R  L  R  F  V  T  I  K  F  L  F  I  Y  I  Y  L  F  F  *  Q  R  Y  T  S  I  V  A  T  P  L  V  V  D  I  K  *  V  K  *  V  N  K  R  D  S  F  *  F  M  Q  F  N  L  I  N  D  N  R  G  F  D  F  E  F  *  Y  P  H  H  L  I  I  C  S  H  I  I  P  F  Y  L  L  P  N  F  P  Q  V  F  S  K  S  L  L  L  G  I  *  P  E  F  L  S  I  N  R  L  *  S  F  R  F  *  V  V  I  F  L  *  K  K  V  *  Y  S  I  N  *  G  S  F  L  L  T  *  S  T  </first_frame>
            <second_frame>  L  T  W  P  L  Q  L  F  P  P  L  I  T  S  I  S  A  S  S  L  H  H  L  P  N  S  Q  S  L  H  N  Y  A  *  I  F  P  R  R  I  V  F  H  S  S  F  V  L  L  L  L  R  P  L  R  H  H  R  R  R  P  K  S  V  N  P  L  P  L  L  S  P  V  S  M  P  A  S  T  S  S  L  K  D  G  Y  Y  L  N  S  V  S  I  S  W  Q  K  K  F  L  N  Y  Y  V  I  A  L  F  F  R  S  I  I  N  N  D  K  V  C  I  Y  I  M  L  Y  E  T  P  Q  Y  C  C  C  I  V  I  F  V  D  L  D  R  E  C  V  D  *  G  S  *  P  *  N  F  C  L  F  I  Y  I  Y  F  F  N  K  D  I  L  Q  L  *  L  R  H  *  L  *  I  S  N  K  L  S  K  *  I  K  G  I  R  F  N  L  C  N  L  I  *  *  M  T  I  E  V  L  I  S  S  F  N  I  P  I  I  *  S  F  A  V  I  L  F  P  S  I  C  Y  L  I  F  L  K  C  S  P  R  V  C  C  W  V  F  D  L  S  F  L  A  *  I  G  Y  K  V  S  V  F  E  *  S  F  S  C  R  K  K  F  S  T  L  *  I  E  A  R  S  F  *  L  N  Q  H </second_frame>
            <third_frame>   *  H  G  H  Y  N  S  S  L  L  S  S  P  P  F  L  L  L  L  F  I  I  F  Q  I  L  N  H  Y  T  I  M  P  K  F  S  P  E  E  S  Y  F  T  R  H  L  F  F  F  Y  F  A  P  S  A  I  I  V  V  A  P  S  Q  *  T  H  S  H  C  *  V  L  C  Q  C  R  P  R  P  L  L  *  R  T  G  I  I  L  I  L  F  Q  F  H  G  R  R  N  S  L  I  I  M  *  L  H  C  F  S  G  L  L  *  T  M  I  R  S  A  Y  T  L  C  F  M  K  L  L  S  I  V  V  V  L  L  F  L  L  I  *  T  E  S  V  S  I  E  V  R  D  H  K  I  F  V  Y  L  Y  I  F  I  F  L  T  K  I  Y  F  N  C  S  Y  A  T  S  C  R  Y  Q  I  S  *  V  S  K  *  K  G  F  V  L  I  Y  A  I  *  F  D  K  *  Q  *  R  F  *  F  R  V  L  I  S  P  S  F  D  H  L  Q  S  Y  Y  S  L  L  F  V  T  *  F  S  S  S  V  L  Q  E  F  V  V  G  Y  L  T  *  V  S  *  H  K  *  V  I  K  F  P  F  L  S  S  H  F  L  V  E  K  S  L  V  L  Y  K  L  R  L  V  P  S  N  L  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60219" stop="60557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFPRRIVFHSSFVLLLLRPLRHHRRRPKSVNPLPLLSPVSMPASTSSLKDGYYLNSVSISWQKKFLNYYVIALFFRSIINNDKVCIYIMLYETPQYCCCIVIFVDLDRECVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60116" stop="60382"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDMAITTLPSSHHLHFCFFSSSSSKFSITTQLCLNFPPKNRISLVICSSSTSPPPPSSSSPQVSEPTPTAESCVNAGLDLFSKGRVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="63804" PGL_stop="64896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63804" e_stop="63836"/>
            <exon e_start="64048" e_stop="64148"/>
            <exon e_start="64315" e_stop="64411"/>
            <exon e_start="64597" e_stop="64896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63804" e_stop="63836" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="63837" i_stop="64047" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64048" e_stop="64148" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64149" i_stop="64314" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64315" e_stop="64411" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64412" i_stop="64596" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="64597" e_stop="64896" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63804" stop="63836"/>
              <exon start="64048" stop="64148"/>
              <exon start="64315" stop="64411"/>
              <exon start="64597" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63804" stop="63836"/>
              <exon start="64048" stop="64148"/>
              <exon start="64315" stop="64411"/>
              <exon start="64597" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63805" stop="63836"/>
              <exon start="64048" stop="64148"/>
              <exon start="64315" stop="64411"/>
              <exon start="64597" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGG : GAAGATTTTGACCAAAGAACTCAGTCAATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCAGAGTGGGAAAG : GTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAG : GGGATGCCTGACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCGGTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTTTTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGATATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAATAGAAAT</gDNA_template>
            <first_frame> Q  K  A  V  A  S  L  P  S  I  G  :  E  D  F  D  Q  R  T  Q  S  I  I  A  K  S  K  L  K  S  E  I  R  F  K  A  E  V  V  S  P  A  E  W  E  R :   W  I  R  D  Q  Q  K  S  E  G  V  T  P  G  E  D  V  Y  I  I  L  R  L  D  G  R  V  R  R  S  G  K  :  G  M  P  D  W  A  Q  I  L  K  E  L  P  P  M  E  A  I  L  S  K  L  E  R  *  Y  K  F  L  L  L  S  A  K  I  F  S  L  P  G  V  F  S  V  S  L  L  T  *  N  I  K  G  T  N  *  C  L  L  S  L  S  V  L  R  F  H  F  F  T  N  I  Y  C  T  I  I  L  *  I  D  I  D  I  C  Q  M  N  I  Q  R  I  *  N  P  I  G  N  R  N </first_frame>
            <second_frame>  K  R  Q  S  L  P  S  H  P  *  G :   K  I  L  T  K  E  L  S  Q  *  L  Q  N  Q  N  *  S  Q  R  S  G  S  R  R  R  S  F  H  L  Q  S  G  K   : G  G  *  G  I  N  R  S  L  K  V  L  L  L  V  K  M  S  T  L  Y  F  V  *  M  V  V  F  D  D  Q  E  R :   G  C  L  T  G  L  K  F  *  R  N  C  L  Q  W  K  Q  Y  *  A  S  *  K  D  N  T  S  S  S  C  *  V  L  K  S  F  H  Y  L  V  Y  F  R  S  V  S  L  L  E  I  *  K  A  L  I  D  A  C  *  A  C  L  F  Y  V  S  I  F  S  R  T  Y  T  V  L  *  F  Y  K  L  I  L  I  F  A  R  *  I  S  K  G  Y  E  I  P  *  E  I  E   </second_frame>
            <third_frame>   K  G  S  R  F  P  P  I  H  R   : G  R  F  *  P  K  N  S  V  N  N  C  K  I  K  T  E  V  R  D  P  V  Q  G  G  G  R  F  T  C  R  V  G  K  :  V  D  K  G  S  T  E  V  *  R  C  Y  S  W  *  R  C  L  H  Y  T  S  S  R  W  S  C  S  T  I  R  K   : G  D  A  *  L  G  S  N  F  K  G  T  A  S  N  G  S  N  I  K  Q  A  R  K  I  I  Q  V  P  L  A  E  C  *  N  L  F  T  T  W  C  I  F  G  Q  S  P  Y  L  K  Y  K  R  H  *  L  M  P  V  E  L  V  C  F  T  F  P  F  F  H  E  H  I  L  Y  Y  N  S  I  N  *  Y  *  Y  L  P  D  E  Y  P  K  D  M  K  S  H  R  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63804" stop="63836"/>
                    <exon start="64048" stop="64148"/>
                    <exon start="64315" stop="64411"/>
                    <exon start="64597" stop="64671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAVASLPSIGEDFDQRTQSIIAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWAQILKELPPMEAILSKLER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="68977" PGL_stop="69553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68977" e_stop="69553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68977" e_stop="69553" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68977" stop="69529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69029" stop="69520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="69502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69244" stop="69553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAATTTATCAACAATGGCTGCGAATTCCTTTTGTTCCATTTTCATCATCTCTTCATTATTGATCGCAGCTTTGATCATCTCCGGCGATGCTACCGGCGGCGATTTCGACGTGAGCGGTTGGATTCCGATGAAATCCGCCGATAGCTGTGAAGGTTCGATAGCGGAGTGTATGGCTGCCGGAGAATTCGAAATGGATTCGGAGAGCAACAGGCGTATATTAGCAACTACTGATTATATAAGCTATGGTGCGCTGCAGAGTAACAGTGTTCCGTGTTCTAGAAGAGGTGCGTCGTATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATACACGTGGTTGCAGTGCTATTACTCGTTGCCGGAGTTAAATTAATTAAAGATCGAATTAATCGATGTTAATTAATTATTAGTAAGTGTAATTGTTTTGAATAATTTCGTAGTGTTTATATTGTATACTTTAAGTAGGAGTATTTTTCTTTTCAGTTGCAATTTCAAATAAAGTGACAGTGGTGCTTTGGCAGTGGTTTATGGTTAATACAATGTTCATTTGGTGTTTGTTAATACATGTATTA</gDNA_template>
            <first_frame> E  K  F  I  N  N  G  C  E  F  L  L  F  H  F  H  H  L  F  I  I  D  R  S  F  D  H  L  R  R  C  Y  R  R  R  F  R  R  E  R  L  D  S  D  E  I  R  R  *  L  *  R  F  D  S  G  V  Y  G  C  R  R  I  R  N  G  F  G  E  Q  Q  A  Y  I  S  N  Y  *  L  Y  K  L  W  C  A  A  E  *  Q  C  S  V  F  *  K  R  C  V  V  L  *  L  Q  N  R  C  *  S  *  S  V  Y  T  W  L  Q  C  Y  Y  S  L  P  E  L  N  *  L  K  I  E  L  I  D  V  N  *  L  L  V  S  V  I  V  L  N  N  F  V  V  F  I  L  Y  T  L  S  R  S  I  F  L  F  S  C  N  F  K  *  S  D  S  G  A  L  A  V  V  Y  G  *  Y  N  V  H  L  V  F  V  N  T  C  I  </first_frame>
            <second_frame>  K  N  L  S  T  M  A  A  N  S  F  C  S  I  F  I  I  S  S  L  L  I  A  A  L  I  I  S  G  D  A  T  G  G  D  F  D  V  S  G  W  I  P  M  K  S  A  D  S  C  E  G  S  I  A  E  C  M  A  A  G  E  F  E  M  D  S  E  S  N  R  R  I  L  A  T  T  D  Y  I  S  Y  G  A  L  Q  S  N  S  V  P  C  S  R  R  G  A  S  Y  Y  N  C  K  T  G  A  E  A  N  P  Y  T  R  G  C  S  A  I  T  R  C  R  S  *  I  N  *  R  S  N  *  S  M  L  I  N  Y  *  *  V  *  L  F  *  I  I  S  *  C  L  Y  C  I  L  *  V  G  V  F  F  F  S  V  A  I  S  N  K  V  T  V  V  L  W  Q  W  F  M  V  N  T  M  F  I  W  C  L  L  I  H  V  L </second_frame>
            <third_frame>   K  I  Y  Q  Q  W  L  R  I  P  F  V  P  F  S  S  S  L  H  Y  *  S  Q  L  *  S  S  P  A  M  L  P  A  A  I  S  T  *  A  V  G  F  R  *  N  P  P  I  A  V  K  V  R  *  R  S  V  W  L  P  E  N  S  K  W  I  R  R  A  T  G  V  Y  *  Q  L  L  I  I  *  A  M  V  R  C  R  V  T  V  F  R  V  L  E  E  V  R  R  I  I  T  A  K  Q  V  L  K  L  I  R  I  H  V  V  A  V  L  L  L  V  A  G  V  K  L  I  K  D  R  I  N  R  C  *  L  I  I  S  K  C  N  C  F  E  *  F  R  S  V  Y  I  V  Y  F  K  *  E  Y  F  S  F  Q  L  Q  F  Q  I  K  *  Q  W  C  F  G  S  G  L  W  L  I  Q  C  S  F  G  V  C  *  Y  M  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68978" stop="69349"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLSTMAANSFCSIFIISSLLIAALIISGDATGGDFDVSGWIPMKSADSCEGSIAECMAAGEFEMDSESNRRILATTDYISYGALQSNSVPCSRRGASYYNCKTGAEANPYTRGCSAITRCRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="76513" PGL_stop="70162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76513" e_stop="76335"/>
            <exon e_start="76229" e_stop="76195"/>
            <exon e_start="75987" e_stop="75850"/>
            <exon e_start="75040" e_stop="74972"/>
            <exon e_start="73947" e_stop="73790"/>
            <exon e_start="73680" e_stop="73614"/>
            <exon e_start="73512" e_stop="73459"/>
            <exon e_start="73003" e_stop="72915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.440" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.963" e_score="0.981"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76513" e_stop="76335" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.871">
            <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76229" e_stop="76195" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75987" e_stop="75850" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.440">
            <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75040" e_stop="74972" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.936">
            <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73947" e_stop="73790" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.805">
            <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73680" e_stop="73614" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73613" i_stop="73513" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="73512" e_stop="73459" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.963">
            <gDNA_intron_boundary i_start="73458" i_stop="73004" i_length="455"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="73003" e_stop="72915" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76513" stop="76335"/>
              <exon start="76229" stop="76195"/>
              <exon start="75987" stop="75850"/>
              <exon start="75040" stop="74972"/>
              <exon start="73947" stop="73790"/>
              <exon start="73680" stop="73620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76493" stop="76335"/>
              <exon start="76229" stop="76195"/>
              <exon start="75987" stop="75850"/>
              <exon start="75040" stop="74972"/>
              <exon start="73947" stop="73790"/>
              <exon start="73680" stop="73621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76493" stop="76335"/>
              <exon start="76229" stop="76195"/>
              <exon start="75987" stop="75850"/>
              <exon start="75040" stop="74972"/>
              <exon start="73947" stop="73808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76335"/>
              <exon start="76229" stop="76195"/>
              <exon start="75987" stop="75850"/>
              <exon start="75040" stop="74972"/>
              <exon start="73947" stop="73790"/>
              <exon start="73680" stop="73614"/>
              <exon start="73512" stop="73459"/>
              <exon start="73003" stop="72915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGATCGTCAGTTCTCCTGCTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAGTAATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCAT : ATACGAAAATTGATTGGGATGCTTATATGTCTCAG : GTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG : ATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTG : GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG : CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATGGTGAAG : GCAATGGATATTGTTGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG : ATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG</gDNA_template>
            <first_frame> R  D  R  Q  F  S  C  S  G  S  H  G  R  Q  S  S  C  Y  T  Q  E  *  *  I  G  E  F  H  S  K  T  R  *  K  S  *  N  T  F  C  Y  C  N  T  H  C  *  C  H  P  R  C  V  D  Y  R  L  R  S  I :   Y  E  N  *  L  G  C  L  Y  V  S   : G  Y  W  F  S  R  R  R  E  G  L  *  *  L  E  R  *  H  G  A  S  S  L  P  S  R  L  S  L  Y  L  L  C  Y  T  I  C  Y  W  R  S  S  L  S  C  S   : D  S  F  W  L  S  L  R  A  G  S  C  N  C  L  V  H  L  L  E  D  *  C   : G  T  L  V  G  S  L  L  A  F  S  V  E  K  S  S  L  Y  L  C  S  S  I  I  *  *  L  F  C  H  Y  S  P  P  C  C  I  G  L  N  Y  L  P  K  M  A  S  R  V  G  N  F  Q  :  R  S  C  F  H  K  D  E  C  A  P  V  C  T  T  S  V  A  P  H  G  E   : G  N  G  Y  C  W  S  Y  I  C  F  S  R  G  C  I  S  A   : D  S  H  R  A  S  F  Y  P  V  T  S  S  F  I  F  I  K  R  F  Q  S  W  S  G  F  H  P  L  L </first_frame>
            <second_frame>  E  I  V  S  S  P  A  P  A  A  M  A  A  K  A  A  A  I  R  K  S  N  R  S  E  N  F  I  Q  K  L  V  K  N  P  K  I  P  F  A  I  A  I  L  I  A  D  A  I  L  V  A  L  I  I  A  Y  V  P   : Y  T  K  I  D  W  D  A  Y  M  S  Q  :  V  T  G  F  L  E  G  E  R  D  Y  S  N  L  K  G  D  T  G  P  L  V  Y  P  A  G  F  L  Y  I  Y  S  A  I  Q  Y  V  T  G  G  Q  V  Y  P  A  Q  :  I  L  F  G  F  L  Y  V  L  D  L  A  I  V  L  F  I  Y  L  K  T  D  V  :  V  P  W  W  A  L  S  L  L  S  L  S  K  R  V  H  S  I  F  V  L  R  L  F  N  D  C  F  A  T  T  L  L  H  A  A  L  V  S  I  I  C  Q  K  W  H  L  G  L  V  I  F  S :   G  A  V  S  I  K  M  N  V  L  L  Y  A  P  P  L  L  L  L  M  V  K  :  A  M  D  I  V  G  V  I  S  A  L  A  G  A  A  L  V  Q  :  I  L  I  G  L  P  F  I  L  S  H  P  A  S  Y  L  S  N  A  F  N  L  G  R  V  F  I  H  F   </second_frame>
            <third_frame>   R  S  S  V  L  L  L  R  Q  P  W  P  P  K  Q  L  L  Y  A  R  V  I  D  R  R  I  S  F  K  N  S  L  K  I  L  K  Y  L  L  L  L  Q  Y  S  L  L  M  P  S  S  L  R  *  L  S  L  T  F  H  :  I  R  K  L  I  G  M  L  I  C  L  R :   L  L  V  F  S  K  E  R  G  I  I  V  T  *  K  V  T  R  G  L  *  F  T  Q  Q  A  F  F  I  F  T  L  L  Y  N  M  L  L  E  V  K  S  I  L  L  R :   F  F  L  A  F  S  T  C  W  I  L  Q  L  S  C  S  S  T  *  R  L  M  W :   Y  L  G  G  L  S  P  C  F  L  C  R  K  E  F  T  L  S  L  F  F  D  Y  L  M  I  V  L  P  L  L  S  S  M  L  H  W  S  Q  L  S  A  K  N  G  I  *  G  W  *  F  S   : A  E  L  F  P  *  R  *  M  C  S  C  M  H  H  L  C  C  S  S  W  *  R :   Q  W  I  L  L  E  L  Y  L  L  *  Q  G  L  H  *  C  R :   F  S  *  G  F  L  L  S  C  H  I  Q  L  H  I  Y  Q  T  L  S  I  L  V  G  F  S  S  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76512" stop="76335"/>
                    <exon start="76229" stop="76195"/>
                    <exon start="75987" stop="75850"/>
                    <exon start="75040" stop="74972"/>
                    <exon start="73947" stop="73790"/>
                    <exon start="73680" stop="73614"/>
                    <exon start="73512" stop="73459"/>
                    <exon start="73003" stop="72917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIVSSPAPAAMAAKAAAIRKSNRSENFIQKLVKNPKIPFAIAILIADAILVALIIAYVPYTKIDWDAYMSQVTGFLEGERDYSNLKGDTGPLVYPAGFLYIYSAIQYVTGGQVYPAQILFGFLYVLDLAIVLFIYLKTDVVPWWALSLLSLSKRVHSIFVLRLFNDCFATTLLHAALVSIICQKWHLGLVIFSGAVSIKMNVLLYAPPLLLLMVKAMDIVGVISALAGAALVQILIGLPFILSHPASYLSNAFNLGRVFIHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75045" e_stop="74972"/>
            <exon e_start="73947" e_stop="73790"/>
            <exon e_start="73680" e_stop="73614"/>
            <exon e_start="73512" e_stop="73455"/>
            <exon e_start="73003" e_stop="72915"/>
            <exon e_start="72219" e_stop="71825"/>
            <exon e_start="71688" e_stop="71610"/>
            <exon e_start="70796" e_stop="70740"/>
            <exon e_start="70656" e_stop="70162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.843" acc_prob="0.936" e_score="0.932"/>
          <exon-intron don_prob="0.987" acc_prob="0.805" e_score="0.968"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="0.983"/>
          <exon-intron don_prob="0.550" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.976" acc_prob="0.967" e_score="0.933"/>
          <exon-intron don_prob="0.994" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="75045" e_stop="74972" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.843" acc_prob="0.936">
            <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="73947" e_stop="73790" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.805">
            <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="73680" e_stop="73614" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73613" i_stop="73513" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="73512" e_stop="73455" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="73454" i_stop="73004" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="73003" e_stop="72915" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.550" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72914" i_stop="72220" i_length="695"/>
          </intron>
          <exon e_serial="6" e_score="0.933">
            <gDNA_exon_boundary e_start="72219" e_stop="71825" e_length="395"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.967">
            <gDNA_intron_boundary i_start="71824" i_stop="71689" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71688" e_stop="71610" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.776">
            <gDNA_intron_boundary i_start="71609" i_stop="70797" i_length="813"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70796" e_stop="70740" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="70656" e_stop="70162" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75045" stop="74972"/>
              <exon start="73947" stop="73790"/>
              <exon start="73680" stop="73614"/>
              <exon start="73512" stop="73455"/>
              <exon start="73003" stop="72915"/>
              <exon start="72219" stop="71965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="71825"/>
              <exon start="71688" stop="71610"/>
              <exon start="70796" stop="70740"/>
              <exon start="70656" stop="70580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71922" stop="71825"/>
              <exon start="71688" stop="71610"/>
              <exon start="70796" stop="70740"/>
              <exon start="70656" stop="70162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTG : GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG : CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATGGTGAAG : GCAATGGATATTGTTGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAGGTGG : ATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG : GTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAGGTGAGTATTTCTCATATTATCATTACATCTAGTGTAGTGGCGTTGATATTCCAGTACTGAAGTAGGAAAAGAAAAGTCATAATATGATAACTATATCATTTTCTTCTCTACATACAAAGGCAATAAGTTAGCGGCTACTGGACTGCATTTTTCCTTTTTCATCTTTTGCAGGCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACC : ATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTG : GTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACG : TTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTATCTGGTTATGCATGTGAATGGCAGATAAAGAAAAAACAACTGATAAAACAAAGTTTTTGTTTTTCTGTTTCTTTTCGTAGTGTTAATGCTTACAGTTTTGTTAGATGGTATACAAAACCAGAAAGGTGGTAACAACCACACGAAGATCATCCAATGGCATCAAGGATGAATATTTTCTGGGGGTTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATATTTTAGAAGGTCAACCTATTTTATTTATCTAAATCTGTATGGTGTACTATTTATTGTCAAGATTTAAGGA</gDNA_template>
            <first_frame> C  R  F  F  L  A  F  S  T  C  W  I  L  Q  L  S  C  S  S  T  *  R  L  M  W :   Y  L  G  G  L  S  P  C  F  L  C  R  K  E  F  T  L  S  L  F  F  D  Y  L  M  I  V  L  P  L  L  S  S  M  L  H  W  S  Q  L  S  A  K  N  G  I  *  G  W  *  F  S   : A  E  L  F  P  *  R  *  M  C  S  C  M  H  H  L  C  C  S  S  W  *  R :   Q  W  I  L  L  E  L  Y  L  L  *  Q  G  L  H  *  C  R  W  :  I  L  I  G  L  P  F  I  L  S  H  P  A  S  Y  L  S  N  A  F  N  L  G  R  V  F  I  H  F  W :   S  V  N  F  K  F  V  P  E  D  I  F  V  S  K  A  F  A  L  S  L  L  V  A  H  L  S  L  L  L  V  F  A  H  Y  R  W  C  R  *  V  F  L  I  L  S  L  H  L  V  *  W  R  *  Y  S  S  T  E  V  G  K  E  K  S  *  Y  D  N  Y  I  I  F  F  S  T  Y  K  G  N  K  L  A  A  T  G  L  H  F  S  F  F  I  F  C  R  H  E  G  G  L  F  A  V  V  R  S  K  I  I  Q  L  K  L  R  V  S  Q  R  N  P  S  S  T  K  K  V  L  Q  A  D   : H  I  V  T  T  M  F  V  G  N  F  I  G  I  I  C  A  R  S  L  H  Y  Q  F  Y  S  W :   Y  F  Y  C  L  P  Y  L  L  W  K  A  P  F  P  T  L  L  R :   L  F  L  F  A  A  V  E  F  C  W  N  V  F  P  S  N  T  C  S  S  L  V  L  L  C  V  H  L  I  I  L  A  G  L  W  I  S  S  P  E  Y  P  Y  V  E  E  K  T  T  Y  K  S  T  P  K  K  K  A  R  *  S  T  I  W  L  C  M  *  M  A  D  K  E  K  T  T  D  K  T  K  F  L  F  F  C  F  F  S  *  C  *  C  L  Q  F  C  *  M  V  Y  K  T  R  K  V  V  T  T  T  R  R  S  S  N  G  I  K  D  E  Y  F  L  G  V  F  N  I  *  G  F  H  *  L  K  S  E  L  D  L  N  I  L  E  G  Q  P  I  L  F  I  *  I  C  M  V  Y  Y  L  L  S  R  F  K   </first_frame>
            <second_frame>  A  D  S  F  W  L  S  L  R  A  G  S  C  N  C  L  V  H  L  L  E  D  *  C   : G  T  L  V  G  S  L  L  A  F  S  V  E  K  S  S  L  Y  L  C  S  S  I  I  *  *  L  F  C  H  Y  S  P  P  C  C  I  G  L  N  Y  L  P  K  M  A  S  R  V  G  N  F  Q  :  R  S  C  F  H  K  D  E  C  A  P  V  C  T  T  S  V  A  P  H  G  E   : G  N  G  Y  C  W  S  Y  I  C  F  S  R  G  C  I  S  A  G  G :   F  S  *  G  F  L  L  S  C  H  I  Q  L  H  I  Y  Q  T  L  S  I  L  V  G  F  S  S  T  S   : G  L  S  T  S  N  L  F  L  K  T  S  L  F  L  K  L  L  L  S  L  C  *  L  L  I  S  V  C  Y  W  C  L  L  I  T  D  G  A  G  E  Y  F  S  Y  Y  H  Y  I  *  C  S  G  V  D  I  P  V  L  K  *  E  K  K  S  H  N  M  I  T  I  S  F  S  S  L  H  T  K  A  I  S  *  R  L  L  D  C  I  F  P  F  S  S  F  A  G  M  K  E  D  C  L  L  L  C  V  L  K  S  F  N  *  S  S  E  F  L  R  E  I  L  P  Q  P  R  K  S  F  K  L  T  :  I  L  *  R  L  C  L  L  G  I  S  L  A  L  Y  V  P  D  P  S  I  T  N  F  I  L   : G  T  S  I  A  Y  H  I  Y  C  G  K  H  H  F  Q  P  S  Y   : V  Y  S  C  S  Q  L  *  S  F  A  G  T  S  S  P  P  T  L  A  H  H  L  S  S  S  V  S  I  *  S  Y  W  P  V  Y  G  *  V  H  Q  N  I  R  T  S  K  K  K  Q  L  I  N  L  H  L  R  R  R  P  D  K  A  L  S  G  Y  A  C  E  W  Q  I  K  K  K  Q  L  I  K  Q  S  F  C  F  S  V  S  F  R  S  V  N  A  Y  S  F  V  R  W  Y  T  K  P  E  R  W  *  Q  P  H  E  D  H  P  M  A  S  R  M  N  I  F  W  G  F  S  T  F  E  D  F  I  S  S  N  L  N  *  T  *  I  F  *  K  V  N  L  F  Y  L  S  K  S  V  W  C  T  I  Y  C  Q  D  L  R  </second_frame>
            <third_frame>   Q  I  L  F  G  F  L  Y  V  L  D  L  A  I  V  L  F  I  Y  L  K  T  D  V  :  V  P  W  W  A  L  S  L  L  S  L  S  K  R  V  H  S  I  F  V  L  R  L  F  N  D  C  F  A  T  T  L  L  H  A  A  L  V  S  I  I  C  Q  K  W  H  L  G  L  V  I  F  S :   G  A  V  S  I  K  M  N  V  L  L  Y  A  P  P  L  L  L  L  M  V  K  :  A  M  D  I  V  G  V  I  S  A  L  A  G  A  A  L  V  Q  V   : D  S  H  R  A  S  F  Y  P  V  T  S  S  F  I  F  I  K  R  F  Q  S  W  S  G  F  H  P  L  L  :  V  C  Q  L  Q  I  C  S  *  R  H  L  C  F  *  S  F  C  S  L  F  A  S  C  S  S  Q  S  A  I  G  V  C  S  L  Q  M  V  Q  V  S  I  S  H  I  I  I  T  S  S  V  V  A  L  I  F  Q  Y  *  S  R  K  R  K  V  I  I  *  *  L  Y  H  F  L  L  Y  I  Q  R  Q  *  V  S  G  Y  W  T  A  F  F  L  F  H  L  L  Q  A  *  R  R  T  V  C  C  C  A  F  *  N  H  S  T  E  A  Q  S  F  S  E  K  S  F  L  N  Q  E  S  P  S  S  *  P :   Y  C  D  D  Y  V  C  W  E  F  H  W  H  Y  M  C  P  I  P  P  L  P  I  L  F  L  :  V  L  L  L  L  T  I  F  I  V  E  S  T  I  S  N  P  P  T  :  F  I  L  V  R  S  C  R  V  L  L  E  R  L  P  L  Q  H  L  L  I  T  C  P  P  L  C  P  F  D  H  I  G  R  S  M  D  K  F  T  R  I  S  V  R  R  R  K  N  N  L  *  I  Y  T  *  E  E  G  Q  I  K  H  Y  L  V  M  H  V  N  G  R  *  R  K  N  N  *  *  N  K  V  F  V  F  L  F  L  F  V  V  L  M  L  T  V  L  L  D  G  I  Q  N  Q  K  G  G  N  N  H  T  K  I  I  Q  W  H  Q  G  *  I  F  S  G  G  F  Q  H  L  R  I  S  L  A  Q  I  *  I  R  L  E  Y  F  R  R  S  T  Y  F  I  Y  L  N  L  Y  G  V  L  F  I  V  K  I  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72020" stop="71825"/>
                    <exon start="71688" stop="71610"/>
                    <exon start="70796" stop="70740"/>
                    <exon start="70656" stop="70473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDNYIIFFSTYKGNKLAATGLHFSFFIFCRHEGGLFAVVRSKIIQLKLRVSQRNPSSTKKVLQADHIVTTMFVGNFIGIICARSLHYQFYSWYFYCLPYLLWKAPFPTLLRLFLFAAVEFCWNVFPSNTCSSLVLLCVHLIILAGLWISSPEYPYVEEKTTYKSTPKKKAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75043" stop="74972"/>
                    <exon start="73947" stop="73790"/>
                    <exon start="73680" stop="73614"/>
                    <exon start="73512" stop="73455"/>
                    <exon start="73003" stop="72915"/>
                    <exon start="72219" stop="72193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QILFGFLYVLDLAIVLFIYLKTDVVPWWALSLLSLSKRVHSIFVLRLFNDCFATTLLHAALVSIICQKWHLGLVIFSGAVSIKMNVLLYAPPLLLLMVKAMDIVGVISALAGAALVQVDSHRASFYPVTSSFIFIKRFQSWSGFHPLLVCQLQICS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73498" e_stop="73459"/>
            <exon e_start="73100" e_stop="72915"/>
            <exon e_start="72219" e_stop="72103"/>
            <exon e_start="71931" e_stop="71825"/>
            <exon e_start="71688" e_stop="71610"/>
            <exon e_start="70796" e_stop="70740"/>
            <exon e_start="70656" e_stop="70162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.550" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="0.991"/>
          <exon-intron don_prob="0.976" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73498" e_stop="73459" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.977">
            <gDNA_intron_boundary i_start="73458" i_stop="73101" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73100" e_stop="72915" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.550" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72914" i_stop="72220" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="72219" e_stop="72103" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="72102" i_stop="71932" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71931" e_stop="71825" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.967">
            <gDNA_intron_boundary i_start="71824" i_stop="71689" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71688" e_stop="71610" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.776">
            <gDNA_intron_boundary i_start="71609" i_stop="70797" i_length="813"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70796" e_stop="70740" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="70656" e_stop="70162" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73498" stop="73459"/>
              <exon start="73100" stop="72915"/>
              <exon start="72219" stop="72103"/>
              <exon start="71931" stop="71825"/>
              <exon start="71688" stop="71630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73498" stop="73459"/>
              <exon start="73100" stop="72915"/>
              <exon start="72219" stop="72103"/>
              <exon start="71931" stop="71877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71922" stop="71825"/>
              <exon start="71688" stop="71610"/>
              <exon start="70796" stop="70740"/>
              <exon start="70656" stop="70162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG : GTGAGTCGGTTACGAGTATACTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTGATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCATATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG : GTCTGTCAACTTCAAATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTCATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAG : GCATGAAGGAGGACTGTTTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTTCCTCAACCAAGAAAGTCCTTCAAGCTGACC : ATATTGTGACGACTATGTTTGTTGGGAATTTCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTG : GTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACG : TTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTATCTGGTTATGCATGTGAATGGCAGATAAAGAAAAAACAACTGATAAAACAAAGTTTTTGTTTTTCTGTTTCTTTTCGTAGTGTTAATGCTTACAGTTTTGTTAGATGGTATACAAAACCAGAAAGGTGGTAACAACCACACGAAGATCATCCAATGGCATCAAGGATGAATATTTTCTGGGGGTTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATATTTTAGAAGGTCAACCTATTTTATTTATCTAAATCTGTATGGTGTACTATTTATTGTCAAGATTTAAGGA</gDNA_template>
            <first_frame> W  S  Y  I  C  F  S  R  G  C  I  S  A   : G  E  S  V  T  S  I  L  L  L  N  G  A  S  S  D  Q  I  L  Y  Q  *  S  W  *  L  V  I  G  D  W  C  R  F  S  *  G  F  L  L  S  C  H  I  Q  L  H  I  Y  Q  T  L  S  I  L  V  G  F  S  S  T  S   : G  L  S  T  S  N  L  F  L  K  T  S  L  F  L  K  L  L  L  S  L  C  *  L  L  I  S  V  C  Y  W  C  L  L  I  T  D  G  A   : G  M  K  E  D  C  L  L  L  C  V  L  K  S  F  N  *  S  S  E  F  L  R  E  I  L  P  Q  P  R  K  S  F  K  L  T  :  I  L  *  R  L  C  L  L  G  I  S  L  A  L  Y  V  P  D  P  S  I  T  N  F  I  L   : G  T  S  I  A  Y  H  I  Y  C  G  K  H  H  F  Q  P  S  Y   : V  Y  S  C  S  Q  L  *  S  F  A  G  T  S  S  P  P  T  L  A  H  H  L  S  S  S  V  S  I  *  S  Y  W  P  V  Y  G  *  V  H  Q  N  I  R  T  S  K  K  K  Q  L  I  N  L  H  L  R  R  R  P  D  K  A  L  S  G  Y  A  C  E  W  Q  I  K  K  K  Q  L  I  K  Q  S  F  C  F  S  V  S  F  R  S  V  N  A  Y  S  F  V  R  W  Y  T  K  P  E  R  W  *  Q  P  H  E  D  H  P  M  A  S  R  M  N  I  F  W  G  F  S  T  F  E  D  F  I  S  S  N  L  N  *  T  *  I  F  *  K  V  N  L  F  Y  L  S  K  S  V  W  C  T  I  Y  C  Q  D  L  R  </first_frame>
            <second_frame>  G  V  I  S  A  L  A  G  A  A  L  V  Q  :  V  S  R  L  R  V  Y  F  C  *  M  E  L  L  L  I  K  F  F  T  N  D  H  G  D  W  *  L  V  I  G  A  D  S  H  R  A  S  F  Y  P  V  T  S  S  F  I  F  I  K  R  F  Q  S  W  S  G  F  H  P  L  L  :  V  C  Q  L  Q  I  C  S  *  R  H  L  C  F  *  S  F  C  S  L  F  A  S  C  S  S  Q  S  A  I  G  V  C  S  L  Q  M  V  Q  :  A  *  R  R  T  V  C  C  C  A  F  *  N  H  S  T  E  A  Q  S  F  S  E  K  S  F  L  N  Q  E  S  P  S  S  *  P :   Y  C  D  D  Y  V  C  W  E  F  H  W  H  Y  M  C  P  I  P  P  L  P  I  L  F  L  :  V  L  L  L  L  T  I  F  I  V  E  S  T  I  S  N  P  P  T  :  F  I  L  V  R  S  C  R  V  L  L  E  R  L  P  L  Q  H  L  L  I  T  C  P  P  L  C  P  F  D  H  I  G  R  S  M  D  K  F  T  R  I  S  V  R  R  R  K  N  N  L  *  I  Y  T  *  E  E  G  Q  I  K  H  Y  L  V  M  H  V  N  G  R  *  R  K  N  N  *  *  N  K  V  F  V  F  L  F  L  F  V  V  L  M  L  T  V  L  L  D  G  I  Q  N  Q  K  G  G  N  N  H  T  K  I  I  Q  W  H  Q  G  *  I  F  S  G  G  F  Q  H  L  R  I  S  L  A  Q  I  *  I  R  L  E  Y  F  R  R  S  T  Y  F  I  Y  L  N  L  Y  G  V  L  F  I  V  K  I  *  G </second_frame>
            <third_frame>   E  L  Y  L  L  *  Q  G  L  H  *  C  R :   *  V  G  Y  E  Y  T  S  V  E  W  S  F  F  *  S  N  S  L  P  M  I  M  V  I  G  D  W  *  L  V  Q  I  L  I  G  L  P  F  I  L  S  H  P  A  S  Y  L  S  N  A  F  N  L  G  R  V  F  I  H  F  W :   S  V  N  F  K  F  V  P  E  D  I  F  V  S  K  A  F  A  L  S  L  L  V  A  H  L  S  L  L  L  V  F  A  H  Y  R  W  C  R :   H  E  G  G  L  F  A  V  V  R  S  K  I  I  Q  L  K  L  R  V  S  Q  R  N  P  S  S  T  K  K  V  L  Q  A  D   : H  I  V  T  T  M  F  V  G  N  F  I  G  I  I  C  A  R  S  L  H  Y  Q  F  Y  S  W :   Y  F  Y  C  L  P  Y  L  L  W  K  A  P  F  P  T  L  L  R :   L  F  L  F  A  A  V  E  F  C  W  N  V  F  P  S  N  T  C  S  S  L  V  L  L  C  V  H  L  I  I  L  A  G  L  W  I  S  S  P  E  Y  P  Y  V  E  E  K  T  T  Y  K  S  T  P  K  K  K  A  R  *  S  T  I  W  L  C  M  *  M  A  D  K  E  K  T  T  D  K  T  K  F  L  F  F  C  F  F  S  *  C  *  C  L  Q  F  C  *  M  V  Y  K  T  R  K  V  V  T  T  T  R  R  S  S  N  G  I  K  D  E  Y  F  L  G  V  F  N  I  *  G  F  H  *  L  K  S  E  L  D  L  N  I  L  E  G  Q  P  I  L  F  I  *  I  C  M  V  Y  Y  L  L  S  R  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73012" stop="72915"/>
                    <exon start="72219" stop="72103"/>
                    <exon start="71931" stop="71825"/>
                    <exon start="71688" stop="71610"/>
                    <exon start="70796" stop="70740"/>
                    <exon start="70656" stop="70473"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQILIGLPFILSHPASYLSNAFNLGRVFIHFWSVNFKFVPEDIFVSKAFALSLLVAHLSLLLVFAHYRWCRHEGGLFAVVRSKIIQLKLRVSQRNPSSTKKVLQADHIVTTMFVGNFIGIICARSLHYQFYSWYFYCLPYLLWKAPFPTLLRLFLFAAVEFCWNVFPSNTCSSLVLLCVHLIILAGLWISSPEYPYVEEKTTYKSTPKKKAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="70661" e_stop="70465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="70661" e_stop="70465" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70661" stop="70465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGTTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTAT</gDNA_template>
            <first_frame> C  S  L  F  L  F  A  A  V  E  F  C  W  N  V  F  P  S  N  T  C  S  S  L  V  L  L  C  V  H  L  I  I  L  A  G  L  W  I  S  S  P  E  Y  P  Y  V  E  E  K  T  T  Y  K  S  T  P  K  K  K  A  R  *  S  T   </first_frame>
            <second_frame>  A  V  Y  S  C  S  Q  L  *  S  F  A  G  T  S  S  P  P  T  L  A  H  H  L  S  S  S  V  S  I  *  S  Y  W  P  V  Y  G  *  V  H  Q  N  I  R  T  S  K  K  K  Q  L  I  N  L  H  L  R  R  R  P  D  K  A  L  </second_frame>
            <third_frame>   Q  F  I  L  V  R  S  C  R  V  L  L  E  R  L  P  L  Q  H  L  L  I  T  C  P  P  L  C  P  F  D  H  I  G  R  S  M  D  K  F  T  R  I  S  V  R  R  R  K  N  N  L  *  I  Y  T  *  E  E  G  Q  I  K  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099P03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71211" e_stop="70740"/>
            <exon e_start="70656" e_stop="70489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="0.907"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="71211" e_stop="70740" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70739" i_stop="70657" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="70656" e_stop="70489" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71211" stop="70740"/>
              <exon start="70656" stop="70489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATTGTGCCACACTAAAATAAATAATGCGTTTCAGACAGACATAGTAATAAATAGAGATGCTTCAGCATCTCATTGAAGAACAGAGAATTTTGGGGTGCATTTTGTTAGTAGTTCACGGGACTGCAGCATGTACTTAAGGGAGAAGTGTATTTAAATATAAAATGCTCATTGAGTAGTTGACCACCTCTCTGTGTGTAACTTTTTCCCCGGTGAGTCGGTGAAGATCACAAAAAATCAGCTCCTCTCCCCTGCTAGCATGGCACCAAACAAGACATAAAGGCCTTGACTAACATTTGCCAAGCAAATGGAAATTTGGAAGATTACTCGCTCTTTCACTGCGTTCCTGGGTTCTGTGTCAAAGTTTTAATTGAATTAAGATAAAACCATTGATGTCCTAGAGCTTGTTTGCAGGTACTTCTATTGCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACG : TTTATTCTTGTTCGCAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCCTCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACGTCGAAGAAAAAACAACTTATAAATCTACACCTAA</gDNA_template>
            <first_frame> S  N  C  A  T  L  K  *  I  M  R  F  R  Q  T  *  *  *  I  E  M  L  Q  H  L  I  E  E  Q  R  I  L  G  C  I  L  L  V  V  H  G  T  A  A  C  T  *  G  R  S  V  F  K  Y  K  M  L  I  E  *  L  T  T  S  L  C  V  T  F  S  P  V  S  R  *  R  S  Q  K  I  S  S  S  P  L  L  A  W  H  Q  T  R  H  K  G  L  D  *  H  L  P  S  K  W  K  F  G  R  L  L  A  L  S  L  R  S  W  V  L  C  Q  S  F  N  *  I  K  I  K  P  L  M  S  *  S  L  F  A  G  T  S  I  A  Y  H  I  Y  C  G  K  H  H  F  Q  P  S  Y   : V  Y  S  C  S  Q  L  *  S  F  A  G  T  S  S  P  P  T  L  A  H  H  L  S  S  S  V  S  I  *  S  Y  W  P  V  Y  G  *  V  H  Q  N  I  R  T  S  K  K  K  Q  L  I  N  L  H  L  </first_frame>
            <second_frame>  V  I  V  P  H  *  N  K  *  C  V  S  D  R  H  S  N  K  *  R  C  F  S  I  S  L  K  N  R  E  F  W  G  A  F  C  *  *  F  T  G  L  Q  H  V  L  K  G  E  V  Y  L  N  I  K  C  S  L  S  S  *  P  P  L  C  V  *  L  F  P  R  *  V  G  E  D  H  K  K  S  A  P  L  P  C  *  H  G  T  K  Q  D  I  K  A  L  T  N  I  C  Q  A  N  G  N  L  E  D  Y  S  L  F  H  C  V  P  G  F  C  V  K  V  L  I  E  L  R  *  N  H  *  C  P  R  A  C  L  Q  V  L  L  L  L  T  I  F  I  V  E  S  T  I  S  N  P  P  T  :  F  I  L  V  R  S  C  R  V  L  L  E  R  L  P  L  Q  H  L  L  I  T  C  P  P  L  C  P  F  D  H  I  G  R  S  M  D  K  F  T  R  I  S  V  R  R  R  K  N  N  L  *  I  Y  T  * </second_frame>
            <third_frame>   *  L  C  H  T  K  I  N  N  A  F  Q  T  D  I  V  I  N  R  D  A  S  A  S  H  *  R  T  E  N  F  G  V  H  F  V  S  S  S  R  D  C  S  M  Y  L  R  E  K  C  I  *  I  *  N  A  H  *  V  V  D  H  L  S  V  C  N  F  F  P  G  E  S  V  K  I  T  K  N  Q  L  L  S  P  A  S  M  A  P  N  K  T  *  R  P  *  L  T  F  A  K  Q  M  E  I  W  K  I  T  R  S  F  T  A  F  L  G  S  V  S  K  F  *  L  N  *  D  K  T  I  D  V  L  E  L  V  C  R  Y  F  Y  C  L  P  Y  L  L  W  K  A  P  F  P  T  L  L  R :   L  F  L  F  A  A  V  E  F  C  W  N  V  F  P  S  N  T  C  S  S  L  V  L  L  C  V  H  L  I  I  L  A  G  L  W  I  S  S  P  E  Y  P  Y  V  E  E  K  T  T  Y  K  S  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70831" stop="70740"/>
                    <exon start="70656" stop="70491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKTIDVLELVCRYFYCLPYLLWKAPFPTLLRLFLFAAVEFCWNVFPSNTCSSLVLLCVHLIILAGLWISSPEYPYVEEKTTYKSTP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70817" stop="70740"/>
                    <exon start="70656" stop="70501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPRACLQVLLLLTIFIVESTISNPPTFILVRSCRVLLERLPLQHLLITCPPLCPFDHIGRSMDKFTRISVRRRKNNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="83075" PGL_stop="83743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83075" e_stop="83743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83075" e_stop="83743" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83075" stop="83428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83092" stop="83406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83292" stop="83743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290510" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAACAGAGCAATACACAAAATCTGCTCACGATAAGGATTCAAAATCGAACAAAAACATCAACAGATCAACAAGAAAACAGATCGCTAAACGAGGCGTCAAATCATTGACAATCGCTTTATCAATTCCACTTCTATTAACCCTAATTGACATCTCTCTATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</gDNA_template>
            <first_frame> N  K  Q  S  N  T  Q  N  L  L  T  I  R  I  Q  N  R  T  K  T  S  T  D  Q  Q  E  N  R  S  L  N  E  A  S  N  H  *  Q  S  L  Y  Q  F  H  F  Y  *  P  *  L  T  S  L  Y  S  D  Q  V  T  S  T  F  Q  W  R  S  L  S  G  F  R  V  Y  G  L  Y  I  *  P  V  *  V  L  L  F  *  W  V  F  L  L  G  L  F  G  L  K  V  G  F  I  V  N  L  W  L  *  F  C  I  *  L  N  *  G  *  V  W  L  G  I  Q  L  C  S  K  Q  V  L  L  E  L  G  *  C  Y  V  W  L  C  L  E  C  *  L  V  V  L  G  L  L  K  M  *  I  L  L  L  G  I  W  L  N  L  V  L  D  G  L  C  F  *  V  *  Q  I  L  S  L  C  I  I  R  K  K  *  I  I  C  T  C  F  L  F  C  F  G  L  *  G  L  C  T  V  N  L  H  V  L  Y  L  C  F  N  *  I  K  F  T  C  V  F  Y </first_frame>
            <second_frame>  T  N  R  A  I  H  K  I  C  S  R  *  G  F  K  I  E  Q  K  H  Q  Q  I  N  K  K  T  D  R  *  T  R  R  Q  I  I  D  N  R  F  I  N  S  T  S  I  N  P  N  *  H  L  S  I  R  I  K  L  P  V  R  F  N  G  E  A  F  L  V  S  A  S  M  G  F  T  F  S  L  F  R  F  F  S  S  N  G  S  F  C  L  A  C  L  G  *  R  W  V  S  S  S  T  Y  G  Y  N  F  V  F  S  S  I  R  V  E  F  G  L  G  S  S  C  V  Q  S  R  C  Y  *  N  W  V  S  V  M  C  G  F  V  W  S  V  D  W  L  F  *  G  F  *  K  C  E  S  Y  C  W  G  F  G  *  T  L  F  W  M  G  C  A  F  E  F  S  K  S  *  A  C  V  S  L  G  R  N  K  *  Y  A  L  V  F  C  F  V  L  A  C  E  A  Y  V  L  *  I  Y  M  F  Y  I  Y  V  L  I  K  L  N  L  H  V  C  S   </second_frame>
            <third_frame>   Q  T  E  Q  Y  T  K  S  A  H  D  K  D  S  K  S  N  K  N  I  N  R  S  T  R  K  Q  I  A  K  R  G  V  K  S  L  T  I  A  L  S  I  P  L  L  L  T  L  I  D  I  S  L  F  G  S  S  Y  Q  Y  V  S  M  E  K  P  F  W  F  P  R  L  W  A  L  H  L  A  C  L  G  S  S  L  L  M  G  L  S  A  W  L  V  W  A  E  G  G  F  H  R  Q  P  M  A  I  I  L  Y  L  A  Q  L  G  L  S  L  A  W  D  P  V  V  F  K  A  G  A  T  R  I  G  L  V  L  C  V  A  L  F  G  V  L  I  G  C  F  R  A  F  K  N  V  N  P  I  A  G  D  L  V  K  P  C  F  G  W  A  V  L  L  S  L  A  N  L  K  L  V  Y  H  *  E  E  I  N  N  M  H  L  F  F  V  L  F  W  L  V  R  L  M  Y  C  K  F  T  C  S  I  F  M  F  *  L  N  *  I  Y  M  C  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83077" stop="83622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTEQYTKSAHDKDSKSNKNINRSTRKQIAKRGVKSLTIALSIPLLLTLIDISLFGSSYQYVSMEKPFWFPRLWALHLACLGSSLLMGLSAWLVWAEGGFHRQPMAIILYLAQLGLSLAWDPVVFKAGATRIGLVLCVALFGVLIGCFRAFKNVNPIAGDLVKPCFGWAVLLSLANLKLVYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="83735" PGL_stop="83235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83735" e_stop="83235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83735" e_stop="83235" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83735" stop="83235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATGTAAATTTAATTTAATTAAAACATAAATATAGAACATGTAAATTTACAGTACATAAGCCTCACAAGCCAAAACAAAACAAAAAACAAGTGCATATTATTTATTTCTTCCTAATGATACACAAGCTTAAGATTTGCTAAACTCAAAAGCACAGCCCATCCAAAACAAGGTTTAACCAAATCCCCAGCAATAGGATTCACATTTTTAAAAGCCCTAAAACAACCAATCAACACTCCAAACAAAGCCACACATAACACTAACCCAATTCTAGTAGCACCTGCTTTGAACACAACTGGATCCCAAGCCAAACTCAACCCTAATTGAGCTAAATACAAAATTATAGCCATAGGTTGACGATGAAACCCACCTTCAGCCCAAACAAGCCAAGCAGAAAGACCCATTAGAAGAGAAGAACCTAAACAGGCTAAATGTAAAGCCCATAGACGCGGAAACCAGAAAGGCTTCTCCATTGAAACGTACTGGTAACTTGATCCGAAT</gDNA_template>
            <first_frame> H  M  *  I  *  F  N  *  N  I  N  I  E  H  V  N  L  Q  Y  I  S  L  T  S  Q  N  K  T  K  N  K  C  I  L  F  I  S  S  *  *  Y  T  S  L  R  F  A  K  L  K  S  T  A  H  P  K  Q  G  L  T  K  S  P  A  I  G  F  T  F  L  K  A  L  K  Q  P  I  N  T  P  N  K  A  T  H  N  T  N  P  I  L  V  A  P  A  L  N  T  T  G  S  Q  A  K  L  N  P  N  *  A  K  Y  K  I  I  A  I  G  *  R  *  N  P  P  S  A  Q  T  S  Q  A  E  R  P  I  R  R  E  E  P  K  Q  A  K  C  K  A  H  R  R  G  N  Q  K  G  F  S  I  E  T  Y  W  *  L  D  P  N </first_frame>
            <second_frame>  T  C  K  F  N  L  I  K  T  *  I  *  N  M  *  I  Y  S  T  *  A  S  Q  A  K  T  K  Q  K  T  S  A  Y  Y  L  F  L  P  N  D  T  Q  A  *  D  L  L  N  S  K  A  Q  P  I  Q  N  K  V  *  P  N  P  Q  Q  *  D  S  H  F  *  K  P  *  N  N  Q  S  T  L  Q  T  K  P  H  I  T  L  T  Q  F  *  *  H  L  L  *  T  Q  L  D  P  K  P  N  S  T  L  I  E  L  N  T  K  L  *  P  *  V  D  D  E  T  H  L  Q  P  K  Q  A  K  Q  K  D  P  L  E  E  K  N  L  N  R  L  N  V  K  P  I  D  A  E  T  R  K  A  S  P  L  K  R  T  G  N  L  I  R   </second_frame>
            <third_frame>   H  V  N  L  I  *  L  K  H  K  Y  R  T  C  K  F  T  V  H  K  P  H  K  P  K  Q  N  K  K  Q  V  H  I  I  Y  F  F  L  M  I  H  K  L  K  I  C  *  T  Q  K  H  S  P  S  K  T  R  F  N  Q  I  P  S  N  R  I  H  I  F  K  S  P  K  T  T  N  Q  H  S  K  Q  S  H  T  *  H  *  P  N  S  S  S  T  C  F  E  H  N  W  I  P  S  Q  T  Q  P  *  L  S  *  I  Q  N  Y  S  H  R  L  T  M  K  P  T  F  S  P  N  K  P  S  R  K  T  H  *  K  R  R  T  *  T  G  *  M  *  S  P  *  T  R  K  P  E  R  L  L  H  *  N  V  L  V  T  *  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83615" stop="83409"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTSLRFAKLKSTAHPKQGLTKSPAIGFTFLKALKQPINTPNKATHNTNPILVAPALNTTGSQAKLNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="98144" PGL_stop="100011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98144" e_stop="98347"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="98144" e_stop="98347" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="99270" e_stop="99918" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98190" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98222" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98261" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98298" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98971" stop="99006"/>
              <exon start="99270" stop="99902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99550" stop="99909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99731" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCCTTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</gDNA_template>
            <first_frame> P  A  F  S  K  L  S  C  T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  V  P  *  Y  I  V  F  S  N  Y  </first_frame>
            <second_frame>  L  P  F  R  S  S  P  V  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K  F  L  N  I  L  Y  L  V  I  I </second_frame>
            <third_frame>   C  L  F  E  A  L  L  Y  K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L  S  S  L  I  Y  C  I  *  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98186" stop="98347"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSISTMADAAATPPTDPASTAPPATTDPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98144" e_stop="98347"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99887"/>
            <exon e_start="99979" e_stop="100003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.933"/>
          <exon-only e_score="0.680"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="98144" e_stop="98347" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="99270" e_stop="99887" e_length="618"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99888" i_stop="99978" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.680">
            <gDNA_exon_boundary e_start="99979" e_stop="100003" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98190" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98222" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98261" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98298" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99505" stop="99887"/>
              <exon start="99979" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99581" stop="99887"/>
              <exon start="99979" stop="100003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCCTTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAA : GTGAAACAAAATACAAGAATAAAGA</gDNA_template>
            <first_frame> P  A  F  S  K  L  S  C  T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  :  V  K  Q  N  T  R  I  K  </first_frame>
            <second_frame>  L  P  F  R  S  S  P  V  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K :   *  N  K  I  Q  E  *  R </second_frame>
            <third_frame>   C  L  F  E  A  L  L  Y  K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L   : S  E  T  K  Y  K  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98186" stop="98347"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSISTMADAAATPPTDPASTAPPATTDPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98144" e_stop="98347"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99884"/>
            <exon e_start="99979" e_stop="100011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.933"/>
          <exon-only e_score="0.576"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="98144" e_stop="98347" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="99270" e_stop="99884" e_length="615"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99885" i_stop="99978" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.576">
            <gDNA_exon_boundary e_start="99979" e_stop="100011" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98190" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98222" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98261" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98298" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99325" stop="99884"/>
              <exon start="99979" stop="100011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCCTTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCT : GTGAAACAAAATACAAGAATAAAGAGGTTTTAG</gDNA_template>
            <first_frame> P  A  F  S  K  L  S  C  T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  :  V  K  Q  N  T  R  I  K  R  F  * </first_frame>
            <second_frame>  L  P  F  R  S  S  P  V  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L :   *  N  K  I  Q  E  *  R  G  F   </second_frame>
            <third_frame>   C  L  F  E  A  L  L  Y  K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F   : C  E  T  K  Y  K  N  K  E  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98186" stop="98347"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSISTMADAAATPPTDPASTAPPATTDPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="98144" e_stop="98347"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99887"/>
            <exon e_start="99976" e_stop="99989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.172" e_score="0.936"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="98144" e_stop="98347" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="99270" e_stop="99887" e_length="618"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.172">
            <gDNA_intron_boundary i_start="99888" i_stop="99975" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.643">
            <gDNA_exon_boundary e_start="99976" e_stop="99989" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98190" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98222" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98261" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98298" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99298" stop="99887"/>
              <exon start="99976" stop="99989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCCTTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAA : CAGGTGAAACAAAA</gDNA_template>
            <first_frame> P  A  F  S  K  L  S  C  T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  :  Q  V  K  Q   </first_frame>
            <second_frame>  L  P  F  R  S  S  P  V  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  N :   R  *  N  K  </second_frame>
            <third_frame>   C  L  F  E  A  L  L  Y  K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L   : T  G  E  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98186" stop="98347"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSISTMADAAATPPTDPASTAPPATTDPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="98144" e_stop="98347"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99867"/>
            <exon e_start="99979" e_stop="99989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.929"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="98144" e_stop="98347" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="99270" e_stop="99867" e_length="598"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="99868" i_stop="99978" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.636">
            <gDNA_exon_boundary e_start="99979" e_stop="99989" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98181" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98190" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98219" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98222" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98261" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98298" stop="98347"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99582" stop="99867"/>
              <exon start="99979" stop="99989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCCTTTTCGAAGCTCTCCTGTACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTA : GTGAAACAAAA</gDNA_template>
            <first_frame> P  A  F  S  K  L  S  C  T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F   : S  E  T  K </first_frame>
            <second_frame>  L  P  F  R  S  S  P  V  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  :  V  K  Q   </second_frame>
            <third_frame>   C  L  F  E  A  L  L  Y  K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  * :   *  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98186" stop="98347"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSISTMADAAATPPTDPASTAPPATTDPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="98310" e_stop="98351"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.968"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="0.964"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="98310" e_stop="98351" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98352" i_stop="98781" i_length="430"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="99270" e_stop="99918" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98310" stop="98351"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98321" stop="98351"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98971" stop="99006"/>
              <exon start="99270" stop="99902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99550" stop="99909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99731" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</gDNA_template>
            <first_frame> T  R  R  R  L  L  V  L  I  Q  L  I  Q  *  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  V  P  *  Y  I  V  F  S  N  Y  </first_frame>
            <second_frame>  H  D  A  A  Y  *  Y  *  S  S  *  S  S  K :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K  F  L  N  I  L  Y  L  V  I  I </second_frame>
            <third_frame>   T  T  P  P  T  S  T  D  P  A  D  P  V   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L  S  S  L  I  Y  C  I  *  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="98168" e_stop="98360"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.779" acc_prob="0.996" e_score="0.824"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="0.978"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.824">
            <gDNA_exon_boundary e_start="98168" e_stop="98360" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.779" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98361" i_stop="98781" i_length="421"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="99270" e_stop="99918" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98168" stop="98360"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98360"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98971" stop="99006"/>
              <exon start="99270" stop="99902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99550" stop="99909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99731" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAACTCCATTACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCAGTAAGTATACAAT : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</gDNA_template>
            <first_frame> T  N  S  I  T  *  F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  V  S  I  Q   : C  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L  S  S  L  I  Y  C  I  *  *  L   </first_frame>
            <second_frame>  Q  T  P  L  L  S  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q  *  V  Y  N  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  V  P  *  Y  I  V  F  S  N  Y  </second_frame>
            <third_frame>   K  L  H  Y  L  V  F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S  S  K  Y  T  M :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K  F  L  N  I  L  Y  L  V  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98352" stop="98360"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYNVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="98186" e_stop="98347"/>
            <exon e_start="98427" e_stop="98466"/>
            <exon e_start="98782" e_stop="99006"/>
            <exon e_start="99270" e_stop="99918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.895"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.500"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="0.978"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="98186" e_stop="98347" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98348" i_stop="98426" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="98427" e_stop="98466" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98467" i_stop="98781" i_length="315"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="98782" e_stop="99006" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="99007" i_stop="99269" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="99270" e_stop="99918" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98186" stop="98347"/>
              <exon start="98427" stop="98466"/>
              <exon start="98782" stop="99006"/>
              <exon start="99270" stop="99485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98810" stop="99006"/>
              <exon start="99270" stop="99877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98847" stop="99006"/>
              <exon start="99270" stop="99874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98887" stop="99006"/>
              <exon start="99270" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98950" stop="99006"/>
              <exon start="99270" stop="99894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="99006"/>
              <exon start="99270" stop="99848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98971" stop="99006"/>
              <exon start="99270" stop="99902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99550" stop="99909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99731" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCAGCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : CGTGGTTGTAACTTCATATTCTGTTATTCAGGCTTCACAT : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</gDNA_template>
            <first_frame> F  F  S  I  S  T  M  A  D  A  A  A  T  P  P  T  D  P  A  S  T  A  P  P  A  T  T  D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  R  G  C  N  F  I  F  C  Y  S  G  F  T   : C  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K   : G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L  S  S  L  I  Y  C  I  *  *  L   </first_frame>
            <second_frame>  F  S  P  S  L  P  W  L  T  Q  L  Q  R  R  L  L  I  Q  Q  A  R  R  H  L  L  R  L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  H :   V  V  V  T  S  Y  S  V  I  Q  A  S  H  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  :  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  V  P  *  Y  I  V  F  S  N  Y  </second_frame>
            <third_frame>   F  L  H  L  Y  H  G  *  R  S  C  N  A  A  Y  *  S  S  K  H  G  A  T  C  Y  D  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : T  W  L  *  L  H  I  L  L  F  R  L  H  M :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R :   L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K  F  L  N  I  L  Y  L  V  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98187" stop="98347"/>
                    <exon start="98427" stop="98466"/>
                    <exon start="98782" stop="99006"/>
                    <exon start="99270" stop="99764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSPSLPWLTQLQRRLLIQQARRHLLRLIQQARRRLLVLIQQTRRRLLVLIQLIHVVVTSYSVIQASHVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="98265" e_stop="98347"/>
            <exon e_start="98782" e_stop="99918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.976"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="98265" e_stop="98347" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98348" i_stop="98781" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="98782" e_stop="99918" e_length="1137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98265" stop="98347"/>
              <exon start="98782" stop="99466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98832" stop="99002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99349" stop="99821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99430" stop="99815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99477" stop="99738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99550" stop="99909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99731" stop="99895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATCCAGCAAGCACGACGCCGCCTGCTAGTACTGATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGATGAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGCTTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAGGCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTTCCTTTCAATCTCCTCAAGTTCATCGACCTAAAGGTTCACCTTCTTTCTCCAAAATGAATTTTACCCATACTGTCTACACCATACTTATTTTGCAGCTGAAAGTTTGCTGGAATTGAGAAGGTATTTGTATGGCATTCAGAAATTGTCTTCTCCAACTAATCGAAATCCTAGATCTAGCTCAATCTGGAAGAATGTGCATGGACATGCACATGATAATTCACTAACATAGAAACGAATGTTGTAAACTTTGAACTCGAATTTCAGTGGCAAGGATTTGAAAGTTTGAATCTATGCAGGTTGCAGACTTGATGACAGAAGTTGAAAGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAGGCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACAGCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATACACAAAATACGAGCCAGTGATCGAGAAAAATGCGGTTTTGGCATGGAGATCTCTGAATAAGCTTCCTTTGTTCCCTCAAGTGGCTCAGATTTTGGTGCCGACGGCTGCTTATTGGAGTGAGAAATACAATCAAGCGGTGACATATGCGTCGGAGAACGGCTATACGGCGGCGCATTATTTACCGATTATTCCCGTAGAGAGGATCGCGAAGGTGTTTGAAGGCGGCGCCACCGCTGAAAACGAGCAGTCCGTTCCCTTGACCGACGGCACTGTTGCTCCGGCGCAATGACCATTTTACATTACTGTACTGGGGGGGGGGGGGGGGGGGGGCTTAATGGGCCGTCAGGTTAATAACTTGGTTTATGTTTGTCGGTAGTAATTGTTCATCTTTATATCGTGAGCCACTTCTTAAGTTCCTTAATATATTGTATTTAGTAATTATC</gDNA_template>
            <first_frame> L  I  Q  Q  A  R  R  R  L  L  V  L  I  Q  Q  T  R  R  R  L  L  V  L  I  Q  L  I  Q :   *  Q  K  M  R  G  N  L  N  I  W  I  S  F  K  L  Q  R  S  M  *  L  F  A  S  Q  L  C  M  N  T  A  K  K  T  P  V  R  *  N  L  V  Y  R  P  *  K  P  L  L  K  L  L  S  D  R  F  M  R  S  S  I  T  F  L  S  I  S  S  S  S  S  T  *  R  F  T  F  F  L  Q  N  E  F  Y  P  Y  C  L  H  H  T  Y  F  A  A  E  S  L  L  E  L  R  R  Y  L  Y  G  I  Q  K  L  S  S  P  T  N  R  N  P  R  S  S  S  I  W  K  N  V  H  G  H  A  H  D  N  S  L  T  *  K  R  M  L  *  T  L  N  S  N  F  S  G  K  D  L  K  V  *  I  Y  A  G  C  R  L  D  D  R  S  *  K  P  C  A  F  S  T  K  A  D  I  I  *  S  S  V  N  S  S  E  G  S  R  I  S  S  R  S  R  R  R  G  T  A  R  W  L  S  G  H  S  E  Q  R  S  *  N  T  L  H  K  V  R  T  H  S  Q  G  A  I  H  K  I  R  A  S  D  R  E  K  C  G  F  G  M  E  I  S  E  *  A  S  F  V  P  S  S  G  S  D  F  G  A  D  G  C  L  L  E  *  E  I  Q  S  S  G  D  I  C  V  G  E  R  L  Y  G  G  A  L  F  T  D  Y  S  R  R  E  D  R  E  G  V  *  R  R  R  H  R  *  K  R  A  V  R  S  L  D  R  R  H  C  C  S  G  A  M  T  I  L  H  Y  C  T  G  G  G  G  G  G  G  L  N  G  P  S  G  *  *  L  G  L  C  L  S  V  V  I  V  H  L  Y  I  V  S  H  F  L  S  S  L  I  Y  C  I  *  *  L   </first_frame>
            <second_frame>  *  S  S  K  H  D  A  A  C  *  Y  *  S  S  K  H  D  A  A  Y  *  Y  *  S  S  *  S   : S  S  R  R  *  E  E  T  *  I  S  G  F  R  S  S  C  S  D  L  C  D  C  L  L  L  N  F  V  *  I  R  Q  R  K  L  R  S  V  E  T  W  C  T  G  R  R  S  H  C  *  N  C  Y  R  T  G  L  *  E  V  P  *  R  S  F  Q  S  P  Q  V  H  R  P  K  G  S  P  S  F  S  K  M  N  F  T  H  T  V  Y  T  I  L  I  L  Q  L  K  V  C  W  N  *  E  G  I  C  M  A  F  R  N  C  L  L  Q  L  I  E  I  L  D  L  A  Q  S  G  R  M  C  M  D  M  H  M  I  I  H  *  H  R  N  E  C  C  K  L  *  T  R  I  S  V  A  R  I  *  K  F  E  S  M  Q  V  A  D  L  M  T  E  V  E  S  H  V  P  S  L  L  K  Q  T  S  S  K  A  L  L  I  A  Q  K  A  P  E  L  A  R  D  L  A  G  E  V  Q  H  D  G  L  V  D  T  A  S  N  V  A  K  T  L  Y  T  K  Y  E  P  T  V  K  E  L  Y  T  K  Y  E  P  V  I  E  K  N  A  V  L  A  W  R  S  L  N  K  L  P  L  F  P  Q  V  A  Q  I  L  V  P  T  A  A  Y  W  S  E  K  Y  N  Q  A  V  T  Y  A  S  E  N  G  Y  T  A  A  H  Y  L  P  I  I  P  V  E  R  I  A  K  V  F  E  G  G  A  T  A  E  N  E  Q  S  V  P  L  T  D  G  T  V  A  P  A  Q  *  P  F  Y  I  T  V  L  G  G  G  G  G  G  G  L  M  G  R  Q  V  N  N  L  V  Y  V  C  R  *  *  L  F  I  F  I  S  *  A  T  S  *  V  P  *  Y  I  V  F  S  N  Y  </second_frame>
            <third_frame>   D  P  A  S  T  T  P  P  A  S  T  D  P  A  N  T  T  P  P  T  S  T  D  P  A  D  P  :  V  A  E  D  E  R  K  L  K  Y  L  D  F  V  Q  V  A  A  I  Y  V  I  V  C  F  S  T  L  Y  E  Y  G  K  E  N  S  G  P  L  K  P  G  V  Q  A  V  E  A  T  V  K  T  V  I  G  P  V  Y  E  K  F  H  N  V  P  F  N  L  L  K  F  I  D  L  K  V  H  L  L  S  P  K  *  I  L  P  I  L  S  T  P  Y  L  F  C  S  *  K  F  A  G  I  E  K  V  F  V  W  H  S  E  I  V  F  S  N  *  S  K  S  *  I  *  L  N  L  E  E  C  A  W  T  C  T  *  *  F  T  N  I  E  T  N  V  V  N  F  E  L  E  F  Q  W  Q  G  F  E  S  L  N  L  C  R  L  Q  T  *  *  Q  K  L  K  A  M  C  L  L  Y  *  S  R  H  H  L  K  L  C  *  *  L  R  R  L  Q  N  *  L  E  I  S  P  A  R  Y  S  T  M  A  *  W  T  Q  R  A  T  *  L  K  H  S  T  Q  S  T  N  P  Q  S  R  S  Y  T  Q  N  T  S  Q  *  S  R  K  M  R  F  W  H  G  D  L  *  I  S  F  L  C  S  L  K  W  L  R  F  W  C  R  R  L  L  I  G  V  R  N  T  I  K  R  *  H  M  R  R  R  T  A  I  R  R  R  I  I  Y  R  L  F  P  *  R  G  S  R  R  C  L  K  A  A  P  P  L  K  T  S  S  P  F  P  *  P  T  A  L  L  L  R  R  N  D  H  F  T  L  L  Y  W  G  G  G  G  G  G  A  *  W  A  V  R  L  I  T  W  F  M  F  V  G  S  N  C  S  S  L  Y  R  E  P  L  L  K  F  L  N  I  L  Y  L  V  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99252" stop="99764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFESMQVADLMTEVESHVPSLLKQTSSKALLIAQKAPELARDLAGEVQHDGLVDTASNVAKTLYTKYEPTVKELYTKYEPVIEKNAVLAWRSLNKLPLFPQVAQILVPTAAYWSEKYNQAVTYASENGYTAAHYLPIIPVERIAKVFEGGATAENEQSVPLTDGTVAPAQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98267" stop="98347"/>
                    <exon start="98782" stop="99030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPASTTPPASTDPANTTPPTSTDPADPVAEDERKLKYLDFVQVAAIYVIVCFSTLYEYGKENSGPLKPGVQAVEATVKTVIGPVYEKFHNVPFNLLKFIDLKVHLLSPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="9" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99005" stop="99202"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFTFFLQNEFYPYCLHHTYFAAESLLELRRYLYGIQKLSSPTNRNPRSSSIWKNVHGHAHDNSLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="104640" PGL_stop="99376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104640" e_stop="101647"/>
            <exon e_start="99918" e_stop="99376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.428" e_score="0.999"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="104640" e_stop="101647" e_length="2994"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.428">
            <gDNA_intron_boundary i_start="101646" i_stop="99919" i_length="1728"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="99918" e_stop="99376" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104640" stop="104083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104192" stop="103491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103730" stop="103015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103626" stop="102920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103607" stop="102859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103340" stop="102716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103339" stop="102603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103328" stop="102885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103322" stop="102997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="102717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103163" stop="102314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103121" stop="102214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103084" stop="102463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103015" stop="102583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102980" stop="102090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102822" stop="102074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102746" stop="102530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102705" stop="102343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102702" stop="102157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102655" stop="102057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102646" stop="101933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102646" stop="102022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102589" stop="101745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102575" stop="101845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102570" stop="101849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102485" stop="101818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102375" stop="101818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102335" stop="101797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102298" stop="101743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102262" stop="101651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102149" stop="101716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102125" stop="101647"/>
              <exon start="99918" stop="99875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102107" stop="101647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101931" stop="101647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101870" stop="101647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99909" stop="99569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99876" stop="99376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99874" stop="99399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99857" stop="99376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTGGACACCAAGGATGTTGAAGTGGAACCTGAGCAGGCAGTGTCTGGAACTATATATGCCAATGGTGACCATTCCGGAGAAAGCGTCGAGCGAGATGTAGTGGAAGTTGAAGTCTCTGGTCAAACATCTGCTATATCAAGGTCAATCACTGGCTCAGAGCAAGAAGGAGAAGCTAAAGATCATATAGATGAAGAAGCTAACCTTGAAGGCTCAGTTTCAGATGGAGAGACAGATGGTATGATTTTTGGAAGCTCTGAAGCTGCCAAACAGTTTATGGAGGAGCTGGAAAGGGAATCTGGTGGTGGCTCCTATGCTGGTGCTGAGGTTTCTCAGGATATTGATGGTCAGATTGTCACCGACTCAGATGAGGAGGCTGATACTGATGAAGAAGGAGATGTGAAGGAGTTGTTTGATTCAGCTGCCTTAGCTGCTCTTTTAAAAGCAGCAACAGGTGGTGATTCTGATGGTGGCAACATAACAGTCACGTCTCAAGATGGATCAAGACTGTTCTCTGTTGAACGTCCTGCTGGTCTTGGGTCATCACTCCGGTCACTGAGGCCAGCTCCCCGACCAAGCCAACCCAATCTTTTTACTCATTCCAATCTCCAGAACAGTGGAGAATCTGAGAACAACTTGAGTGAAGAAGAGAAGAAGAAACTGGACACACTACAGCAGATCAGGGTCAAGTTTTTGAGGCTTATTCACAGGTTGGGTCTATCTTCTGATGAGCCCATAGCTGCACAAGTTTTGTACCGGATGACACTTATTGCACGAAGGCAAAACAGTCCACTTTTTAGCGTTGAGGCTGCCAAGATGAAAGCTTTCCAGCTTGAAGCAGAGGGGAAAGATGATTTGGACTTCTCTGTGAATATCCTGGTTATTGGCAAATCTGGGGTGGGTAAGAGCGCTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTTGGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGGGTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTCTTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGATCGGTTGGATGCCCAAACTAGAGATCTCAATGATCTTCCTATGCTGAAGACTATCACAAGTTGTCTTGGCCCTTCAATATGGCGAAGCGCCATAGTCACCCTCACACATGGAGCTTCTGCACCTCCAGATGGACCTTCTGGATCCCCTTTAAGTTATGAGGTGTTTGTTACTCAAAGATCTCATGTTGTTCAGCAGTCCATCGGGCAAGCAGTAGGCGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT : GATAATTACTAAATACAATATATTAAGGAACTTAAGAAGTGGCTCACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</gDNA_template>
            <first_frame> S  L  D  T  K  D  V  E  V  E  P  E  Q  A  V  S  G  T  I  Y  A  N  G  D  H  S  G  E  S  V  E  R  D  V  V  E  V  E  V  S  G  Q  T  S  A  I  S  R  S  I  T  G  S  E  Q  E  G  E  A  K  D  H  I  D  E  E  A  N  L  E  G  S  V  S  D  G  E  T  D  G  M  I  F  G  S  S  E  A  A  K  Q  F  M  E  E  L  E  R  E  S  G  G  G  S  Y  A  G  A  E  V  S  Q  D  I  D  G  Q  I  V  T  D  S  D  E  E  A  D  T  D  E  E  G  D  V  K  E  L  F  D  S  A  A  L  A  A  L  L  K  A  A  T  G  G  D  S  D  G  G  N  I  T  V  T  S  Q  D  G  S  R  L  F  S  V  E  R  P  A  G  L  G  S  S  L  R  S  L  R  P  A  P  R  P  S  Q  P  N  L  F  T  H  S  N  L  Q  N  S  G  E  S  E  N  N  L  S  E  E  E  K  K  K  L  D  T  L  Q  Q  I  R  V  K  F  L  R  L  I  H  R  L  G  L  S  S  D  E  P  I  A  A  Q  V  L  Y  R  M  T  L  I  A  R  R  Q  N  S  P  L  F  S  V  E  A  A  K  M  K  A  F  Q  L  E  A  E  G  K  D  D  L  D  F  S  V  N  I  L  V  I  G  K  S  G  V  G  K  S  A  T  I  N  S  I  F  G  E  E  K  T  S  I  D  A  F  G  P  A  T  T  S  V  K  E  I  S  G  V  V  D  G  V  K  I  R  V  F  D  T  P  G  L  K  S  S  A  M  E  Q  G  F  N  R  S  V  L  S  S  V  K  K  L  T  K  K  N  P  P  D  I  Y  L  Y  V  D  R  L  D  A  Q  T  R  D  L  N  D  L  P  M  L  K  T  I  T  S  C  L  G  P  S  I  W  R  S  A  I  V  T  L  T  H  G  A  S  A  P  P  D  G  P  S  G  S  P  L  S  Y  E  V  F  V  T  Q  R  S  H  V  V  Q  Q  S  I  G  Q  A  V  G  D  L  R  M  M  S  P  S  L  M  N  P  V  S  L  V  E  N  H  P  S  C  R  R  N  R  D  G  H  K  I  L  P  N  G  Q  S  W  R  P  Q  L  L  L  L  S  Y  S  M  K  I  L  S  E  A  S  A  L  S  K  P  E  D  P  F  D  H  R  K  L  F  G  F  R  T  R  S  P  P  L  P  Y  M  L  S  S  M  L  Q  S  R  A  H  P  K  L  S  A  E  Q  G  G  D  N  G  D  S  D  I  D  L  D  D  L  S  D  S  D  Q  E  E  E  D  E  Y  D  Q  L  P  P  F  K  P  L  R  K  A  Q  L  A  K  L  S  K  E  Q  R  K  A  Y  F  E  E  Y  D  Y  R  V  K  L  L  Q  K  K  Q  L  R  E  D  L  K  R  M  K  E  M  K  S  K  G  K  E  A  A  I  D  N  G  Y  A  E  E  E  A  D  A  G  A  A  A  P  V  A  V  P  L  P  D  M  A  L  P  P  S  F  D  S  D  N  P  A  Y  R  Y  R  F  L  E  P  T  S  Q  F  L  A  R  P  V  L  D  T  H  G  W  D  H  D  C  G  Y  D  G  V  N  V  E  Q  S  L  A  I  A  S  R  F  P  A  A  V  T  V  Q  I  T  K  D  K  K  D  F  S  I  N  L  D  S  S  I  A  A  K  H  G  E  N  G  S  T  M  A  G  F  D  I  Q  S  I  G  K  Q  L  A  Y  I  V  R  G  E  T  K  F  K  S  L  K  K  N  K  T  A  C  G  I  S  V  T  F  L  G  E  N  M  V  T  G  L  K  V  E  D  Q  I  I  L  G  K  Q  Y  V  L  V  G  S  A  G  T  V  R  S  Q  S  D  T  A  Y  G  A  N  F  E  L  Q  R  R  E  A  D  F  P  I  G  Q  V  Q  S  T  L  S  M  S  V  I  K  W  R  G  D  L  A  L  G  F  N  S  M  A  Q  F  A  V  G  R  N  S  K  V  A  V  R  A  G  I  N  N  K  L  S  G  Q  V  T  V  R  T  S  S  S  D  H  L  S  L  A  L  T  A  I  I  P  T  A  I  G  I  Y  R  K  L  W  P  D  A  G  E  K  Y  S  I  Y  *  I  S  F  P  Y  Q  H  C  I  F  G  S  L  D  L  T  *  *  H  I  V  F  V  S  S  L  N  N  A  S  V  N  F  P  S  I  *  D  S  Y  C  Y  E  L  *  V  N  F  E  *  L  N  V  L  F  C  Q  M  K  *  R  G  L  C  C  F  :  D  N  Y  *  I  Q  Y  I  K  E  L  K  K  W  L  T  I  *  R  *  T  I  T  T  D  K  H  K  P  S  Y  *  P  D  G  P  L  S  P  P  P  P  P  P  P  V  Q  *  C  K  M  V  I  A  P  E  Q  Q  C  R  R  S  R  E  R  T  A  R  F  Q  R  W  R  R  L  Q  T  P  S  R  S  S  L  R  E  *  S  V  N  N  A  P  P  Y  S  R  S  P  T  H  M  S  P  L  D  C  I  S  H  S  N  K  Q  P  S  A  P  K  S  E  P  L  E  G  T  K  E  A  Y  S  E  I  S  M  P  K  P  H  F  S  R  S  L  A  R  I  L  C  I  A  P  *  L  W  V  R  T  L  C  R  V  F  *  L  R  C  S  L  C  P  L  S  H  R  A  V  P  R  R  R  D </first_frame>
            <second_frame>  V  W  T  P  R  M  L  K  W  N  L  S  R  Q  C  L  E  L  Y  M  P  M  V  T  I  P  E  K  A  S  S  E  M  *  W  K  L  K  S  L  V  K  H  L  L  Y  Q  G  Q  S  L  A  Q  S  K  K  E  K  L  K  I  I  *  M  K  K  L  T  L  K  A  Q  F  Q  M  E  R  Q  M  V  *  F  L  E  A  L  K  L  P  N  S  L  W  R  S  W  K  G  N  L  V  V  A  P  M  L  V  L  R  F  L  R  I  L  M  V  R  L  S  P  T  Q  M  R  R  L  I  L  M  K  K  E  M  *  R  S  C  L  I  Q  L  P  *  L  L  F  *  K  Q  Q  Q  V  V  I  L  M  V  A  T  *  Q  S  R  L  K  M  D  Q  D  C  S  L  L  N  V  L  L  V  L  G  H  H  S  G  H  *  G  Q  L  P  D  Q  A  N  P  I  F  L  L  I  P  I  S  R  T  V  E  N  L  R  T  T  *  V  K  K  R  R  R  N  W  T  H  Y  S  R  S  G  S  S  F  *  G  L  F  T  G  W  V  Y  L  L  M  S  P  *  L  H  K  F  C  T  G  *  H  L  L  H  E  G  K  T  V  H  F  L  A  L  R  L  P  R  *  K  L  S  S  L  K  Q  R  G  K  M  I  W  T  S  L  *  I  S  W  L  L  A  N  L  G  W  V  R  A  L  P  *  T  L  S  L  E  R  K  K  H  Q  L  M  P  L  D  L  L  P  P  V  *  K  R  S  V  V  L  *  M  V  L  R  F  G  C  L  I  H  L  A  S  S  P  L  R  W  N  R  V  S  I  A  V  S  C  L  Q  *  R  S  *  L  R  R  I  P  L  I  F  T  S  M  S  I  G  W  M  P  K  L  E  I  S  M  I  F  L  C  *  R  L  S  Q  V  V  L  A  L  Q  Y  G  E  A  P  *  S  P  S  H  M  E  L  L  H  L  Q  M  D  L  L  D  P  L  *  V  M  R  C  L  L  L  K  D  L  M  L  F  S  S  P  S  G  K  Q  *  A  I  Y  E  *  *  V  Q  V  *  *  I  P  S  L  W  *  K  I  I  H  L  A  G  G  I  G  M  D  I  R  Y  Y  L  M  A  R  A  G  G  L  N  Y  Y  Y  *  A  T  Q  *  R  S  Y  L  K  Q  V  H  F  Q  S  L  K  I  H  L  I  T  V  S  S  L  V  S  A  H  A  H  H  L  F  P  T  C  F  L  Q  C  C  S  H  V  R  I  Q  S  F  L  L  S  R  V  V  T  T  V  I  Q  T  L  T  *  M  I  C  Q  T  L  T  K  K  K  K  M  S  M  T  S  F  L  P  S  S  L  F  G  R  L  S  L  L  S  S  A  K  N  R  G  R  R  T  L  R  S  M  T  T  G  S  S  S  F  R  R  N  S  *  E  K  I  *  K  E  *  K  R  *  K  V  R  E  K  R  L  Q  L  T  M  V  M  Q  R  K  K  L  M  Q  V  Q  Q  L  P  *  Q  F  P  F  L  T  W  P  F  H  L  L  L  I  V  I  I  P  P  I  G  T  A  S  W  S  P  H  H  S  S  L  Q  G  L  F  W  T  R  M  V  G  I  M  I  V  A  M  M  V  L  T  W  N  K  V  *  P  L  P  V  V  S  L  L  Q  L  L  C  K  S  P  K  I  R  R  I  S  V  S  I  W  T  L  R  L  L  L  S  T  E  K  M  D  Q  P  W  L  A  L  I  F  K  A  *  G  S  N  L  P  I  L  S  E  E  K  P  N  S  K  A  *  R  R  T  R  L  L  A  E  F  L  L  H  F  *  V  K  I  W  S  L  D  L  K  L  K  I  K  S  S  *  A  S  N  T  F  *  L  A  V  L  A  L  F  D  L  R  V  T  Q  L  M  G  L  T  L  N  C  R  G  G  R  Q  I  S  Q  S  V  R  C  N  L  H  C  L  C  P  S  *  S  G  E  V  I  W  L  *  V  S  T  V  W  R  N  S  L  W  D  A  I  R  R  *  L  F  E  Q  E  S  I  T  S  S  V  G  K  *  P  *  G  Q  A  V  Q  T  I  S  L  L  H  L  L  L  L  F  Q  L  Q  L  A  S  T  G  S  F  G  R  M  L  A  R  S  T  Q  S  T  K  F  H  F  H  I  S  I  A  F  L  V  H  *  T  L  H  D  D  I  L  S  L  S  V  H  *  I  M  L  L  L  I  S  H  L  F  R  I  P  T  V  M  S  Y  K  S  I  L  S  D  *  M  Y  F  F  A  R  *  N  E  E  V  C  V  A  L :   I  I  T  K  Y  N  I  L  R  N  L  R  S  G  S  R  Y  K  D  E  Q  L  L  P  T  N  I  N  Q  V  I  N  L  T  A  H  *  A  P  P  P  P  P  P  Q  Y  S  N  V  K  W  S  L  R  R  S  N  S  A  V  G  Q  G  N  G  L  L  V  F  S  G  G  A  A  F  K  H  L  R  D  P  L  Y  G  N  N  R  *  I  M  R  R  R  I  A  V  L  R  R  I  C  H  R  L  I  V  F  L  T  P  I  S  S  R  R  H  Q  N  L  S  H  L  R  E  Q  R  K  L  I  Q  R  S  P  C  Q  N  R  I  F  L  D  H  W  L  V  F  C  V  *  L  L  D  C  G  F  V  L  C  V  E  C  F  S  Y  V  A  R  C  V  H  *  A  I  V  L  Y  L  A  G  E   </second_frame>
            <third_frame>   S  G  H  Q  G  C  *  S  G  T  *  A  G  S  V  W  N  Y  I  C  Q  W  *  P  F  R  R  K  R  R  A  R  C  S  G  S  *  S  L  W  S  N  I  C  Y  I  K  V  N  H  W  L  R  A  R  R  R  S  *  R  S  Y  R  *  R  S  *  P  *  R  L  S  F  R  W  R  D  R  W  Y  D  F  W  K  L  *  S  C  Q  T  V  Y  G  G  A  G  K  G  I  W  W  W  L  L  C  W  C  *  G  F  S  G  Y  *  W  S  D  C  H  R  L  R  *  G  G  *  Y  *  *  R  R  R  C  E  G  V  V  *  F  S  C  L  S  C  S  F  K  S  S  N  R  W  *  F  *  W  W  Q  H  N  S  H  V  S  R  W  I  K  T  V  L  C  *  T  S  C  W  S  W  V  I  T  P  V  T  E  A  S  S  P  T  K  P  T  Q  S  F  Y  S  F  Q  S  P  E  Q  W  R  I  *  E  Q  L  E  *  R  R  E  E  E  T  G  H  T  T  A  D  Q  G  Q  V  F  E  A  Y  S  Q  V  G  S  I  F  *  *  A  H  S  C  T  S  F  V  P  D  D  T  Y  C  T  K  A  K  Q  S  T  F  *  R  *  G  C  Q  D  E  S  F  P  A  *  S  R  G  E  R  *  F  G  L  L  C  E  Y  P  G  Y  W  Q  I  W  G  G  *  E  R  Y  H  K  L  Y  L  W  R  G  K  N  I  N  *  C  L  W  T  C  Y  H  Q  C  E  R  D  Q  W  C  C  R  W  C  *  D  S  G  V  *  Y  T  W  P  Q  V  L  C  D  G  T  G  F  Q  S  Q  C  L  V  F  S  K  E  V  D  *  E  E  S  P  *  Y  L  P  L  C  R  S  V  G  C  P  N  *  R  S  Q  *  S  S  Y  A  E  D  Y  H  K  L  S  W  P  F  N  M  A  K  R  H  S  H  P  H  T  W  S  F  C  T  S  R  W  T  F  W  I  P  F  K  L  *  G  V  C  Y  S  K  I  S  C  C  S  A  V  H  R  A  S  S  R  R  F  T  N  D  E  S  K  S  D  E  S  R  L  S  G  R  K  S  S  I  L  Q  E  E  *  G  W  T  *  D  T  T  *  W  P  E  L  E  A  S  I  T  T  I  K  L  L  N  E  D  L  I  *  S  K  C  T  F  K  A  *  R  S  I  *  S  P  *  A  L  W  F  P  H  T  L  T  T  S  S  L  H  A  F  F  N  V  A  V  T  C  A  S  K  A  F  C  *  A  G  W  *  Q  R  *  F  R  H  *  L  R  *  F  V  R  L  *  P  R  R  R  R  *  V  *  P  A  S  S  L  Q  A  S  S  E  G  S  A  C  *  A  Q  Q  R  T  E  E  G  V  L  *  G  V  *  L  Q  G  Q  A  P  S  E  E  T  V  E  R  R  F  K  K  N  E  R  D  E  K  *  G  K  R  G  C  N  *  Q  W  L  C  R  G  R  S  *  C  R  C  S  S  S  R  S  S  S  P  S  *  H  G  P  S  T  F  F  *  *  *  *  S  R  L  *  V  P  L  L  G  A  H  I  T  V  P  C  K  A  C  S  G  H  A  W  L  G  S  *  L  W  L  *  W  C  *  R  G  T  K  F  S  H  C  Q  S  F  P  C  C  S  Y  C  A  N  H  Q  R  *  E  G  F  Q  Y  Q  F  G  L  F  D  C  C  *  A  R  R  K  W  I  N  H  G  W  L  *  Y  S  K  H  R  E  A  T  C  L  Y  C  P  R  R  N  Q  I  Q  K  L  E  E  E  Q  D  C  L  R  N  F  C  Y  I  S  R  *  K  Y  G  H  W  T  *  S  *  R  S  N  H  L  R  Q  A  I  R  S  S  W  Q  C  W  H  C  S  I  S  E  *  H  S  L  W  G  *  L  *  T  A  E  E  G  G  R  F  P  N  R  S  G  A  I  Y  I  V  Y  V  R  H  K  V  E  R  *  F  G  S  R  F  Q  Q  Y  G  A  I  R  C  G  T  Q  F  E  G  S  C  S  S  R  N  Q  *  Q  A  Q  W  A  S  N  R  E  D  K  Q  F  R  P  S  L  S  C  T  Y  C  Y  Y  S  N  C  N  W  H  L  Q  E  A  L  A  G  C  W  R  E  V  L  N  L  L  N  F  I  S  I  S  A  L  H  F  W  F  I  R  P  Y  M  M  T  Y  C  L  C  Q  F  I  E  *  C  F  C  *  F  P  I  Y  L  G  F  L  L  L  *  V  I  S  Q  F  *  V  I  E  C  T  F  L  P  D  E  M  K  R  F  V  L  L   : *  *  L  L  N  T  I  Y  *  G  T  *  E  V  A  H  D  I  K  M  N  N  Y  Y  R  Q  T  *  T  K  L  L  T  *  R  P  I  K  P  P  P  P  P  P  P  S  T  V  M  *  N  G  H  C  A  G  A  T  V  P  S  V  K  G  T  D  C  S  F  S  A  V  A  P  P  S  N  T  F  A  I  L  S  T  G  I  I  G  K  *  C  A  A  V  *  P  F  S  D  A  Y  V  T  A  *  L  Y  F  S  L  Q  *  A  A  V  G  T  K  I  *  A  T  *  G  N  K  G  S  L  F  R  D  L  H  A  K  T  A  F  F  S  I  T  G  S  Y  F  V  Y  S  S  L  T  V  G  S  Y  F  V  *  S  V  L  A  T  L  L  A  V  S  T  K  P  S  C  C  T  S  P  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104640" stop="101845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2793</number_coding_nucleotides>
                  <number_encoded_amino_acids>931</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLDTKDVEVEPEQAVSGTIYANGDHSGESVERDVVEVEVSGQTSAISRSITGSEQEGEAKDHIDEEANLEGSVSDGETDGMIFGSSEAAKQFMEELERESGGGSYAGAEVSQDIDGQIVTDSDEEADTDEEGDVKELFDSAALAALLKAATGGDSDGGNITVTSQDGSRLFSVERPAGLGSSLRSLRPAPRPSQPNLFTHSNLQNSGESENNLSEEEKKKLDTLQQIRVKFLRLIHRLGLSSDEPIAAQVLYRMTLIARRQNSPLFSVEAAKMKAFQLEAEGKDDLDFSVNILVIGKSGVGKSATINSIFGEEKTSIDAFGPATTSVKEISGVVDGVKIRVFDTPGLKSSAMEQGFNRSVLSSVKKLTKKNPPDIYLYVDRLDAQTRDLNDLPMLKTITSCLGPSIWRSAIVTLTHGASAPPDGPSGSPLSYEVFVTQRSHVVQQSIGQAVGDLRMMSPSLMNPVSLVENHPSCRRNRDGHKILPNGQSWRPQLLLLSYSMKILSEASALSKPEDPFDHRKLFGFRTRSPPLPYMLSSMLQSRAHPKLSAEQGGDNGDSDIDLDDLSDSDQEEEDEYDQLPPFKPLRKAQLAKLSKEQRKAYFEEYDYRVKLLQKKQLREDLKRMKEMKSKGKEAAIDNGYAEEEADAGAAAPVAVPLPDMALPPSFDSDNPAYRYRFLEPTSQFLARPVLDTHGWDHDCGYDGVNVEQSLAIASRFPAAVTVQITKDKKDFSINLDSSIAAKHGENGSTMAGFDIQSIGKQLAYIVRGETKFKSLKKNKTACGISVTFLGENMVTGLKVEDQIILGKQYVLVGSAGTVRSQSDTAYGANFELQRREADFPIGQVQSTLSMSVIKWRGDLALGFNSMAQFAVGRNSKVAVRAGINNKLSGQVTVRTSSSDHLSLALTAIIPTAIGIYRKLWPDAGEKYSIY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99660" stop="99463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNAPPYSRSPTHMSPLDCISHSNKQPSAPKSEPLEGTKEAYSEISMPKPHFSRSLARILCIAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99937" e_stop="99376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="99937" e_stop="99376" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99937" stop="99376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99909" stop="99569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99876" stop="99376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99874" stop="99399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99857" stop="99376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAATTTGGTGATTTAGGATAATTACTAAATACAATATATTAAGGAACTTAAGAAGTGGCTCACGATATAAAGATGAACAATTACTACCGACAAACATAAACCAAGTTATTAACCTGACGGCCCATTAAGCCCCCCCCCCCCCCCCCCCCCAGTACAGTAATGTAAAATGGTCATTGCGCCGGAGCAACAGTGCCGTCGGTCAAGGGAACGGACTGCTCGTTTTCAGCGGTGGCGCCGCCTTCAAACACCTTCGCGATCCTCTCTACGGGAATAATCGGTAAATAATGCGCCGCCGTATAGCCGTTCTCCGACGCATATGTCACCGCTTGATTGTATTTCTCACTCCAATAAGCAGCCGTCGGCACCAAAATCTGAGCCACTTGAGGGAACAAAGGAAGCTTATTCAGAGATCTCCATGCCAAAACCGCATTTTTCTCGATCACTGGCTCGTATTTTGTGTATAGCTCCTTGACTGTGGGTTCGTACTTTGTGTAGAGTGTTTTAGCTACGTTGCTCGCTGTGTCCACTAAGCCATCGTGCTGTACCTCGCCGGCGAGAT</gDNA_template>
            <first_frame> F  K  F  G  D  L  G  *  L  L  N  T  I  Y  *  G  T  *  E  V  A  H  D  I  K  M  N  N  Y  Y  R  Q  T  *  T  K  L  L  T  *  R  P  I  K  P  P  P  P  P  P  P  S  T  V  M  *  N  G  H  C  A  G  A  T  V  P  S  V  K  G  T  D  C  S  F  S  A  V  A  P  P  S  N  T  F  A  I  L  S  T  G  I  I  G  K  *  C  A  A  V  *  P  F  S  D  A  Y  V  T  A  *  L  Y  F  S  L  Q  *  A  A  V  G  T  K  I  *  A  T  *  G  N  K  G  S  L  F  R  D  L  H  A  K  T  A  F  F  S  I  T  G  S  Y  F  V  Y  S  S  L  T  V  G  S  Y  F  V  *  S  V  L  A  T  L  L  A  V  S  T  K  P  S  C  C  T  S  P  A  R  </first_frame>
            <second_frame>  L  N  L  V  I  *  D  N  Y  *  I  Q  Y  I  K  E  L  K  K  W  L  T  I  *  R  *  T  I  T  T  D  K  H  K  P  S  Y  *  P  D  G  P  L  S  P  P  P  P  P  P  P  V  Q  *  C  K  M  V  I  A  P  E  Q  Q  C  R  R  S  R  E  R  T  A  R  F  Q  R  W  R  R  L  Q  T  P  S  R  S  S  L  R  E  *  S  V  N  N  A  P  P  Y  S  R  S  P  T  H  M  S  P  L  D  C  I  S  H  S  N  K  Q  P  S  A  P  K  S  E  P  L  E  G  T  K  E  A  Y  S  E  I  S  M  P  K  P  H  F  S  R  S  L  A  R  I  L  C  I  A  P  *  L  W  V  R  T  L  C  R  V  F  *  L  R  C  S  L  C  P  L  S  H  R  A  V  P  R  R  R  D </second_frame>
            <third_frame>   *  I  W  *  F  R  I  I  T  K  Y  N  I  L  R  N  L  R  S  G  S  R  Y  K  D  E  Q  L  L  P  T  N  I  N  Q  V  I  N  L  T  A  H  *  A  P  P  P  P  P  P  Q  Y  S  N  V  K  W  S  L  R  R  S  N  S  A  V  G  Q  G  N  G  L  L  V  F  S  G  G  A  A  F  K  H  L  R  D  P  L  Y  G  N  N  R  *  I  M  R  R  R  I  A  V  L  R  R  I  C  H  R  L  I  V  F  L  T  P  I  S  S  R  R  H  Q  N  L  S  H  L  R  E  Q  R  K  L  I  Q  R  S  P  C  Q  N  R  I  F  L  D  H  W  L  V  F  C  V  *  L  L  D  C  G  F  V  L  C  V  E  C  F  S  Y  V  A  R  C  V  H  *  A  I  V  L  Y  L  A  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99660" stop="99463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNAPPYSRSPTHMSPLDCISHSNKQPSAPKSEPLEGTKEAYSEISMPKPHFSRSLARILCIAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="101356" PGL_stop="102368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101356" e_stop="101362"/>
            <exon e_start="101638" e_stop="102368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.676" e_score="0.571"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="101356" e_stop="101362" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.676">
            <gDNA_intron_boundary i_start="101363" i_stop="101637" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="101638" e_stop="102368" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101356" stop="101362"/>
              <exon start="101638" stop="101952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594359" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101651" stop="102368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101772" stop="102328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCAA : GAAGCATATAAAGCAACACAAACCTCTTCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATTGACTTATAACTCATAACAGTAGGAATCCTAAATAGATGGGAAATTAACAGAAGCATTATTCAATGAACTGACAAAGACAATATGTCATCATGTAAGGTCTAATGAACCAAAAATGCAATGCTGATATGGAAATGAAATTTAGTAGATTGAGTACTTCTCGCCAGCATCCGGCCAAAGCTTCCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGAACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGCTACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATCACCTCTCCACTTTATGACGGACATAGACAATGTAGATTGCACCTGACCGATTGGGAAATCTGCCTCCCTCCTCTGCAGTTCAAAGTTAGCCCCATAAGCTGTGTCACTCTGAGATCGAACAGTGCCAGCACTGCCAACTAGAACGTATTGCTTGCCTAAGATGATTTGATCTTCAACTTTAAGTCCAGTGACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTTCTTCTTCAAGCTTTTGAATTTGGTTTCTCCTCGGACAATATAGGCAAGTTGCTTCCCTATGC</gDNA_template>
            <first_frame> F  S   : R  S  I  *  S  N  T  N  L  F  I  S  S  G  K  K  V  H  S  I  T  Q  N  *  L  I  T  H  N  S  R  N  P  K  *  M  G  N  *  Q  K  H  Y  S  M  N  *  Q  R  Q  Y  V  I  M  *  G  L  M  N  Q  K  C  N  A  D  M  E  M  K  F  S  R  L  S  T  S  R  Q  H  P  A  K  A  S  C  R  C  Q  L  Q  L  E  *  *  Q  *  V  Q  E  R  D  G  L  N  C  L  S  S  R  L  L  A  H  *  A  C  Y  *  F  L  L  E  Q  L  P  S  N  C  V  P  Q  R  I  A  P  Y  C  *  N  L  E  P  N  H  L  S  T  L  *  R  T  *  T  M  *  I  A  P  D  R  L  G  N  L  P  P  S  S  A  V  Q  S  *  P  H  K  L  C  H  S  E  I  E  Q  C  Q  H  C  Q  L  E  R  I  A  C  L  R  *  F  D  L  Q  L  *  V  Q  *  P  Y  F  H  L  E  M  *  Q  K  F  R  K  Q  S  C  S  S  S  S  F  *  I  W  F  L  L  G  Q  Y  R  Q  V  A  S  L  C </first_frame>
            <second_frame>  F  Q  :  E  A  Y  K  A  T  Q  T  S  S  F  H  L  A  K  K  Y  I  Q  S  L  K  I  D  L  *  L  I  T  V  G  I  L  N  R  W  E  I  N  R  S  I  I  Q  *  T  D  K  D  N  M  S  S  C  K  V  *  *  T  K  N  A  M  L  I  W  K  *  N  L  V  D  *  V  L  L  A  S  I  R  P  K  L  P  V  D  A  N  C  S  W  N  N  S  S  K  C  K  R  E  M  V  *  T  A  C  P  H  G  Y  L  P  T  E  L  V  I  D  S  C  S  N  S  Y  L  R  I  A  S  H  S  E  L  R  H  T  V  E  T  *  S  Q  I  T  S  P  L  Y  D  G  H  R  Q  C  R  L  H  L  T  D  W  E  I  C  L  P  P  L  Q  F  K  V  S  P  I  S  C  V  T  L  R  S  N  S  A  S  T  A  N  *  N  V  L  L  A  *  D  D  L  I  F  N  F  K  S  S  D  H  I  F  T  *  K  C  N  R  N  S  A  S  S  L  V  L  L  Q  A  F  E  F  G  F  S  S  D  N  I  G  K  L  L  P  Y   </second_frame>
            <third_frame>   F  K :   K  H  I  K  Q  H  K  P  L  H  F  I  W  Q  K  S  T  F  N  H  S  K  L  T  Y  N  S  *  Q  *  E  S  *  I  D  G  K  L  T  E  A  L  F  N  E  L  T  K  T  I  C  H  H  V  R  S  N  E  P  K  M  Q  C  *  Y  G  N  E  I  *  *  I  E  Y  F  S  P  A  S  G  Q  S  F  L  *  M  P  I  A  V  G  I  I  A  V  S  A  R  E  R  W  S  E  L  L  V  L  T  V  T  C  P  L  S  L  L  L  I  P  A  R  T  A  T  F  E  L  R  P  T  A  N  C  A  I  L  L  K  P  R  A  K  S  P  L  H  F  M  T  D  I  D  N  V  D  C  T  *  P  I  G  K  S  A  S  L  L  C  S  S  K  L  A  P  *  A  V  S  L  *  D  R  T  V  P  A  L  P  T  R  T  Y  C  L  P  K  M  I  *  S  S  T  L  S  P  V  T  I  F  S  P  R  N  V  T  E  I  P  Q  A  V  L  F  F  F  K  L  L  N  L  V  S  P  R  T  I  *  A  S  C  F  P  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101894" stop="102112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPIAVGIIAVSARERWSELLVLTVTCPLSLLLIPARTATFELRPTANCAILLKPRAKSPLHFMTDIDNVDCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="121040" PGL_stop="123430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121040" e_stop="121173"/>
            <exon e_start="121346" e_stop="121467"/>
            <exon e_start="121553" e_stop="121644"/>
            <exon e_start="122578" e_stop="122800"/>
            <exon e_start="122947" e_stop="123010"/>
            <exon e_start="123321" e_stop="123430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.859" e_score="0.970"/>
          <exon-intron don_prob="0.956" acc_prob="0.729" e_score="0.951"/>
          <exon-intron don_prob="0.208" acc_prob="0.997" e_score="0.967"/>
          <exon-intron don_prob="0.973" acc_prob="0.842" e_score="0.946"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.891"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="121040" e_stop="121173" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.859">
            <gDNA_intron_boundary i_start="121174" i_stop="121345" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="121346" e_stop="121467" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.729">
            <gDNA_intron_boundary i_start="121468" i_stop="121552" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="121553" e_stop="121644" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.208" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121645" i_stop="122577" i_length="933"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="122578" e_stop="122800" e_length="223"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.842">
            <gDNA_intron_boundary i_start="122801" i_stop="122946" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="0.891">
            <gDNA_exon_boundary e_start="122947" e_stop="123010" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123011" i_stop="123320" i_length="310"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="123321" e_stop="123430" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121040" stop="121173"/>
              <exon start="121346" stop="121467"/>
              <exon start="121553" stop="121644"/>
              <exon start="122578" stop="122800"/>
              <exon start="122947" stop="123010"/>
              <exon start="123321" stop="123430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTACTCAAGGATTTTGATCGTCCAGTTTCTGCTTTAACTAGGCGCCAAACATTTAAAAATGCCTTACAGCAAGGAGTAGTTGATTTCAACACTATTGATGTCACATTTGAAAATTTTCCATATTACTTATG : TGAAAATACAAAGAATGTTCTGATTGCTTCCACTTATATACACTTGAAGTGTAACGGGTTTGCAAAATTTGCATCAGATCTTCCCACAGTGTGCCCTAGGATTTTGCTATCAGGTCCAGCAG : GTTCAGAGATTTATCAGGAGACATTGGCCAAAGCACTTGCTAAGTACTTTTGTGCTAAGCTAATGATAGTTGATTCTCTCTTGCTGCCTGGT : GTTTCAAGTTCCAAAGATGTCGAGCCTGTTAAAGTAAGCTCAAAACCAGAGAGAGCTAGTGTATTTGCTAAACGTGCGGCGCAAGCGGCAGCATTGCATCTGAATAAAAAGCCGGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCAATTTTAAGTTCTCATGCTCAGCCCAAGCAGGAGGCATCGACTGCCTCATCAAAAAACTATACTTTTAAGAAAG : GTGATAGAGTGAAGTACATCGGATCTTTAACATCAAGCTTTTCTCCGTTGCAATCACCTATAAG : GGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAGGAAAATGGGTCCTCTAAAATTGGTGTCAGATTTGATAGATCAATTCCTGAGGGTAATGATCTTG</gDNA_template>
            <first_frame> E  L  L  K  D  F  D  R  P  V  S  A  L  T  R  R  Q  T  F  K  N  A  L  Q  Q  G  V  V  D  F  N  T  I  D  V  T  F  E  N  F  P  Y  Y  L  C :   E  N  T  K  N  V  L  I  A  S  T  Y  I  H  L  K  C  N  G  F  A  K  F  A  S  D  L  P  T  V  C  P  R  I  L  L  S  G  P  A   : G  S  E  I  Y  Q  E  T  L  A  K  A  L  A  K  Y  F  C  A  K  L  M  I  V  D  S  L  L  L  P  G  :  V  S  S  S  K  D  V  E  P  V  K  V  S  S  K  P  E  R  A  S  V  F  A  K  R  A  A  Q  A  A  A  L  H  L  N  K  K  P  A  S  S  V  E  A  D  I  T  G  G  S  I  L  S  S  H  A  Q  P  K  Q  E  A  S  T  A  S  S  K  N  Y  T  F  K  K   : G  D  R  V  K  Y  I  G  S  L  T  S  S  F  S  P  L  Q  S  P  I  R :   G  P  T  Y  G  Y  R  G  K  V  V  L  A  F  E  E  N  G  S  S  K  I  G  V  R  F  D  R  S  I  P  E  G  N  D  L  </first_frame>
            <second_frame>  N  Y  S  R  I  L  I  V  Q  F  L  L  *  L  G  A  K  H  L  K  M  P  Y  S  K  E  *  L  I  S  T  L  L  M  S  H  L  K  I  F  H  I  T  Y   : V  K  I  Q  R  M  F  *  L  L  P  L  I  Y  T  *  S  V  T  G  L  Q  N  L  H  Q  I  F  P  Q  C  A  L  G  F  C  Y  Q  V  Q  Q  :  V  Q  R  F  I  R  R  H  W  P  K  H  L  L  S  T  F  V  L  S  *  *  *  L  I  L  S  C  C  L  V :   F  Q  V  P  K  M  S  S  L  L  K  *  A  Q  N  Q  R  E  L  V  Y  L  L  N  V  R  R  K  R  Q  H  C  I  *  I  K  S  R  L  Q  V  L  R  L  I  *  L  V  V  Q  F  *  V  L  M  L  S  P  S  R  R  H  R  L  P  H  Q  K  T  I  L  L  R  K  :  V  I  E  *  S  T  S  D  L  *  H  Q  A  F  L  R  C  N  H  L  *   : G  V  Q  H  M  V  T  G  A  K  W  F  L  H  L  R  K  M  G  P  L  K  L  V  S  D  L  I  D  Q  F  L  R  V  M  I  L </second_frame>
            <third_frame>   T  T  Q  G  F  *  S  S  S  F  C  F  N  *  A  P  N  I  *  K  C  L  T  A  R  S  S  *  F  Q  H  Y  *  C  H  I  *  K  F  S  I  L  L  M  :  *  K  Y  K  E  C  S  D  C  F  H  L  Y  T  L  E  V  *  R  V  C  K  I  C  I  R  S  S  H  S  V  P  *  D  F  A  I  R  S  S  R :   F  R  D  L  S  G  D  I  G  Q  S  T  C  *  V  L  L  C  *  A  N  D  S  *  F  S  L  A  A  W   : C  F  K  F  Q  R  C  R  A  C  *  S  K  L  K  T  R  E  S  *  C  I  C  *  T  C  G  A  S  G  S  I  A  S  E  *  K  A  G  F  K  C  *  G  *  Y  N  W  W  F  N  F  K  F  S  C  S  A  Q  A  G  G  I  D  C  L  I  K  K  L  Y  F  *  E  R :   *  *  S  E  V  H  R  I  F  N  I  K  L  F  S  V  A  I  T  Y  K  :  G  S  N  I  W  L  Q  G  Q  S  G  S  C  I  *  G  K  W  V  L  *  N  W  C  Q  I  *  *  I  N  S  *  G  *  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121040" stop="121173"/>
                    <exon start="121346" stop="121467"/>
                    <exon start="121553" stop="121644"/>
                    <exon start="122578" stop="122800"/>
                    <exon start="122947" stop="123010"/>
                    <exon start="123321" stop="123429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELLKDFDRPVSALTRRQTFKNALQQGVVDFNTIDVTFENFPYYLCENTKNVLIASTYIHLKCNGFAKFASDLPTVCPRILLSGPAGSEIYQETLAKALAKYFCAKLMIVDSLLLPGVSSSKDVEPVKVSSKPERASVFAKRAAQAAALHLNKKPASSVEADITGGSILSSHAQPKQEASTASSKNYTFKKGDRVKYIGSLTSSFSPLQSPIRGPTYGYRGKVVLAFEENGSSKIGVRFDRSIPEGNDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 405 chains have been computed
$ 
$ memory statistics:
$ 1279528 bytes spliced alignments in total
$ 231 spliced alignments have been stored
$ 5539 bytes was the average size of a spliced alignment
$ 43120 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1960 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 442 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 20:58:09
-->
