<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 20:59:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6483" ref_strand="+" ref_description="SGN-M6483 C2_At1g02910 [cosii_markers]">
      <seq>ttgacatggccattgcaactcttccctcctctcatcacctccatttctgcttcttctcttcatcatcttccaaattctcaatcactacacaattatgcctaaattttcccccgaagaatcgtatttcactcgtcatttgttcttcttctacttcgccccctccgccatcatcgtcgtcgccccaagtcagtgaacccactcccactgctgagtcctgtgtcaatgccggcctcgacctcttctctaaaggacgggtgaaagatgctcttgtgctattcgacacagcacttactttaaatcccaaccctgaggaggctcaagctgcattttataacaaagcatgttgccatgcctacaggggggaaggaaagaaagctgctgagtgtttacgcactgctttgaaagagtataaccttaagtttggcacaatcttaaatgatccagatttggcttccttcagagcattgcctgaatttaaggaactacaggaagaggctaggttaggaggggaagacataggttacagtttccgtagagaccttaagctcatcagtgaggtacaagcaccgtttaggggggtcagaagattcttttatgtggcattcattgctgctgctggaatttctacatttttcactatacccaggttaatccgtgcaattcaaggtggagatggtgctcctgatttaggggctactgcaggaaatgctgctataaatgtcgctggtattgctgtttttgtggctttgttgttttgggacaacaaaaaagaggaggaacagcttgcacaaatattgcgtgatgaaacactatcaaggctgcctttgcgcctttcaactgataggattgttgaactcgtccagctaagagacaccgtgaggcctgttagtgagacaacttcccctttactcttcctgttttcaatttccagaagttgagatgaaaacgtcaggagtccttcaattttaccttgaagaatgagaagtcctgtataacttttactggtgtcacttgtctagttctctttgccctgtattctgtgtaagagatcaaaacttatggtttacctccctcatttgaagaatccatttccatcacatttacattgtcggagggatgataaagacagaaaagttagtaacatcttttgctaggtttgcaacaaatgcgttatgagcaaaaagatatccctttatgtatttggtttctctgtatctctattctttttctaaaatgcctgactgactcaaatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="59817" stop="63822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60117" g_stop="60370" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61938" g_stop="62041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="358" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62399" g_stop="62534" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="494" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62535" i_stop="62703" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62704" g_stop="62935" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="726" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62936" i_stop="63081" i_length="146">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.176" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63082" g_stop="63612" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1257" r_length="531" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-M6483" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>1257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60117" e_stop="60370"/>
          <exon e_start="61938" e_stop="62041"/>
          <exon e_start="62399" e_stop="62534"/>
          <exon e_start="62704" e_stop="62935"/>
          <exon e_start="63082" e_stop="63612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGGGTATTATCTTAATTCTGTTTCAATTTCATGGCAGAAGAAATTCCTTAATTATTATGTGATTGCATTGTTTTTCAGGTCTATTATAAACAATGATAAGGTCTGCATATACATTATGCTTTATGAAACTCCTCAGTATTGTTGTTGTATTGTTATTTTTGTTGATTTAGACAGAGAGTGTGTCGATTGAGGTTCGTGACCATAAAATTTTTGTTTATTTATATATATTTATTTTTTTAACAAAGATATACTTCAATTGTAGCTACGCCACTAGTTGTAGATATCAAATAAGTTAAGTAAGTAAATAAAAGGGATTCGTTTTAATTTATGCAATTTAATTTGATAAATGACAATAGAGGTTTTGATTTCGAGTTTTAATATCCCCATCATTTGATCATTTGCAGTCATATTATTCCCTTCTATTTGTTACCTAATTTTCCTCAAGTGTTCTCCAAGAGTTTGTTGTTGGGTATTTGACCTGAGTTTCTTAGCATAAATAGGTTATAAAGTTTCCGTTTTTGAGTAGTCATTTTCTTGTAGAAAAAAGTTTAGTACTCTATAAATTGAGGCTCGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCATAGGGGGCTTTGAGAGTTTGGTTAGGGCAAGTGTTCTCCAAGAATCTGCAACTTGAGCAAGTTTACTAGTTTGACATGTCTATTCAAAATTTTCCTGTTTTGAGTAAATCTTATGGTAACAGTTGTACTCAGAGGTGTATCTAGGATTTTTAGTTTATGAGTTTTGAATATATCATTTTACACATAGCAAATGAACTTTTTGAAACATAACTACGAGGTTTGAGCCAAAGCTACAGGGTTTTGTTGAACCAAATGGCTGAAGGGGTGGCTCTGCTCCTACACTTAACACCCACCCTAATCATGCTTTATTGAAAATTGGTCGTGAGTGGACTTTTGACAGTGACTTGAAAAATAGGAAGGTACTTTCAGATTTTATCTGTAACAACAACTAGATTTCAAAATGCGTATGACTGGAACTTTATAATAATGCTAAGATTGTAAATTTGACATCAAACAAGAACATGTGTCACATGAATTGAGATAGATGGACTAGGAAGGAGTATAATTGGAAAGTAAATTTCTGTCTAAAACTGAAAGTGTACCAAAAGATTGATGATTCAAAGATTTTCCTACTCAACAAGTTTTTCTGTTAAATCTTGTGCACATCAGAAGCTTGAATGTCTGAGTTATAGTTTCTTGTGTATCTCTATTTGATCCTGCATAGCAAGCTTAAGGATAGTATCTAGTAGGTTGAATCACAATTATTACTGGAAAAGCTATCAATTTGTTAATGTCATTGATCAAATCTTCTTTTTGCTTTTAATCAACAATTTGTCTTTTGTGAAATTACCTATTTAAAATCTATTCAGTTGGCTTTTTTTTTTTTGGTTATTTCTCACTTAATTATGTTTCCAATAATCTGCATTTTGGTTTGTGTACAAACCTCTTGCAGTTGGTTACAATTTCAATCTGCAATATGGGCGACATGCACCTTATTGTTCACTAAATTTGATCTTTCCAGGTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAGGTATATCTCTCCTTTGCCTCTTTCATGGTTGAATTGATTAAGCTGGATCTTATAAACGGTTATTTGTTTGAAATCATGTGAGACATTGAGAAAAAAAACATATTTTCGACTTTCTTCTCGTGTAAAATGCAAGTAAAGGAATTTAAAATTTCTTAATCACAGTTTTAGCTTTGTGAACTGTAAGTTGAGGCACCTGTAGTTTCTTAATCACAGTTCTTAGCTTAATTGTTTCATTGGAAGGATCACTAAAACCAATGTTGAATCTTCAATGAGCGTCTACTATACTTATTTATTCTTCTTCACTCTTTTATTATTTCTCTATTTGTTTAATAATTTATTTTTCTTTATTAACTCAAGGGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAGGTTTGTTTCCAGCTGTTGATATAGTTCTTTAGTTTTCGTCATGCTTGGATGTCTGAATTTAATTCAGCTCCTTACCACATTGACTATGTTACAGTATCTCCAGAACTTCGTAATGCTCTAGCTTTGCTTCATTGTTTCTGAATCTCATAGTCTTCTATTTACCTCACAGGCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTGGTAAATAAGGACTACCTTTGCTACGAATCATTTAGTTCACTTCTAAAGTTCTAGAAATTATTTTTGCTGGCTATATTAACTTGCGCTTTTAAATGAAAAGAACTGTTTCTCAAAAATGATTAACCTCTTGAACCAGCACTCTGCAGGTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCTGTTAGTGAGACAATTTCCCCTTTACTCTTCCTG---TCAATTTCTAGAAGTTGAGTGGAAAACGTCCGGAGTCCTTCAATTTTACCTTGAAGAATGAGATGTCCTGTATGAGATGT-C--CTGTCACTAGTCTAGTTCTCGTTGCCATGTATCCTGCTTAACAGATCAAAAGATATTGTTTACCTCCTTCGTTTGAAGAATCCATTTCCATCACATTTACATTGTCGGA-GGATAATTAAAGAGA-AAAAGTCAGTAACATATTTTGCTAGGTTTGCAACAAATGTCTTTGTTTCATGAGCAAAAAGCTATCCCATTACGTATTTGTTCTCTCTGTCTCTCTTTTTCCTTATTAAAAATTCCGGACTTGAACATATTCTCT</genome_strand>
        <mrna_strand>TTGACATGGCCATTGCAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG.....................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAG.........................................................................................................................................................................GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCTACTGCAGGAAATGCTGCTATAAATGTCGCTG..................................................................................................................................................GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCTGTTAGTGAGACAACTTCCCCTTTACTCTTCCTGTTTTCAATTTCCAGAAGTTGAGATGAAAACGTCAGGAGTCCTTCAATTTTACCTTGAAGAATGAGAAGTCCTGTATAACTTTTACTGGTGTCACTTGTCTAGTTCTCTTTGCCCTGTATTCTGTGTAAGAGATCAAAACTTATGGTTTACCTCCCTCATTTGAAGAATCCATTTCCATCACATTTACATTGTCGGAGGGATGA-TAAAGACAGAAAAGTTAGTAACATCTTTTGCTAGGTTTGCAACAAATG-C---G-TT-ATGAGCAAAAAGATATCCCTTTATGTATTTGGTTTCTCTGTATCTC-TATTCTTTTTCTAAAATGCCTGACTGACTCAAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7564" ref_strand="+" ref_description="SGN-M7564 C2_At2g47760 [cosii_markers]">
      <seq>ctccggcagccatggcagccaaagcagctgctatacgcaagagttcacatagatcggaaaatttcattcaaaaactctttaaaaatcctaaaataccttttgctattgcattactcatcgctgattctatcctcgtcgcgttgattatcgcttacgttccatatacgaaaattgattgggatgcttatatgtctcaggttactggttttctcgaaggagagagggattacagtaacttgaaaggtgacacggggcctctagtttacccagcaggctttctttatatttactctgctatacaatatgttactggaggtcaagtctatcctgctcagattctttttggctttctctacatgctggatctagcaattgtcgtgttcatgtacttgaagactgatgtggtaccttggtgggctctctccttgctttctctgtcgaaaagagttcactctatctttgttcttcgattatttaatgattgttttgccactactctcctccatgctgcattggtctcaattatttgccaaaaatggcatctanggttggtaattttcagcggagctgtttccataaagatgaatgtgctcctgtatgcaccacctctgttgctcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="76793" stop="73321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76493" g_stop="76335" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76229" g_stop="76195" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="197" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75850" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="335" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75040" g_stop="74972" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024">
            <donor d_prob="0.843" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73947" g_stop="73790" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="562" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73680" g_stop="73621" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="622" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-M7564" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76493" e_stop="76335"/>
          <exon e_start="76229" e_stop="76195"/>
          <exon e_start="75987" e_stop="75850"/>
          <exon e_start="75040" e_stop="74972"/>
          <exon e_start="73947" e_stop="73790"/>
          <exon e_start="73680" e_stop="73621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAG-T-A-ATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCATGTAAGTTTCAGTTTTCCACACTTCATTTCCATTTTTTTTTCTTATGTGTGTATGAAATCATAAAATTCATAAATTGTGAAATTCCTCAATTTCTCCTTTTTTTAGATACGAAAATTGATTGGGATGCTTATATGTCTCAGGTGAGAGTTCAACATTTTGATCTGTTTGTTTGTCTTGTTCAGTAATGTAGCAACGGTTTGAGTTGAATTCAGTCTGATCAGTAATTTGGCTTAAATGACAAATTAAGGCAAAATATTTACCAGTATTTGACATTATAGTGTGATTTATTGATATCTTACTTATATAGTTTTGATTGATTGATTTTTTATTTTTTTTTGGTTTAATAGGTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAGGTAATTTTCCTACTTTCTCCATTTCCGTGAGGTGCCTTTTTTTGCGGTGATAGCCAGTGAACTTGCGTAAGGAGTTGTTAGATTGATTGTGATTGTCCACTTTCAAATTTGATTAGATTTGAAAGAGCACGTAAATGCAGTTAATTGGTTGTCCCCTTCCAAATTTCATAGATTTTGCTACTGAATTTTAAGTAAGTGAGACAATAGTTGTTATGTGTTAACAAATAATAAAATGGAAGCATAGCATCTGTATTGATGATGTGAACTAGTAAAGTAGGTGTTTTCTTATGCAGGCTTTGATTTCTAAGCAGCTACATTAACAATCTTAACTCTTGCTTTGCTTCGACTCTGTGTCATAATTTTTGGAACTCCAGCTAGATATTCATGCCCGTGAGGCGTGATGCACTTTTCTTTGAAGATGCTACTACTCTTGGAAGTATACCATCTTCTAGAGTGTTTCTTTTCCAATAATGACAATCTGAAGTAAATATTTTCTTTTCCTCTAACTTAATACTAACTAGAAAAAATTGCAATGGTACACTTTCTATGCTTGTGTGGCTGGTGTAAGCTTAAAGTAGATTCCAGCATGAGAAAAAAAATTAGTATCCTTTTTCTGGGTTTTGCATGTTCTGGAAGGTTCATACATACATAAGGTGTAGTCACTTGTTTAGCTAACTAGTTGTGACTTTTGTATAATGTGGGCATATTCAGCTCGTTCATTGGATAATCCGTACACTATTATGTCCTTCGGTATATGGTCACGTTACTTGCTGCCAGTTGTTGATTTCTATTTTCTCATGCCAGTGCAGATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTGGTAGGCGTCCTCTTCATCTGAATTTTATGGATAACTTTTTTGGAACTGGTAATTCTGAATTTTATGGATGATGTTTTAGGCTAATGTATTCTTGAAAAAGAGTTGTATTGTGACTGCTGTAAGACTGGATCCAGTGGTGAAATTTGTTAGTGTTGACTACAACAACATACCTAGTGTATTACCACAAAGTGGGGTTTGGGGAGGGTAGAGTGTTTAGAGCTAAGGTCTGCATACACTTTCAAAAGATTTGAGTTTCTAGGTCCCTATATATAGTTTTATACATGGATATACTTTATCTTCTCACCTTTGCCACTATAGACTGAACTCTAGCATAATCTTAGTGCTCTTATGAATGAAACCTTATCATTTTATAAAGAATAAAATTCTAGACTTCAATTTGAGACCTGGTGACAAAATGCACCTTCTTTAAGCTTACACAGATGAGCTTTATTTAAAGGAGGTATCTTGGTAAACGATAAATCAAAATTGAACTTCAACGGGATTTATGGAGGAAAAATATGATGAGGCTGACAAGTTATTACGTCTCTGGGAGGTATTTCTAAATAAAGAAGTTAAAGAACAGTGAATCTTGGGACTGTAGTTAGACCATTTATCAATATCATTCAAATCTTATGCTAAGGAGATCAAGAATTTTTGCTCAAATAATTTCCACAAATAATTATGTGTGGTTCAGAGGAAGTTGTAATGTGTAATTGAGGACATCTGTAAAAATTTGTCTGAACATCTCTAATAAGACGGAGTCTCGACCAAAACTTTTGGGAATTTGTATATCTTTTCACACTGAATCAAGGTTGGCTTTCAACTGTAGCAAGAGGAGAATGTCCGCAATATGTCTTACTTTCTTCTGATAACCATTTCTCTTTCTGATTTAGCTTTAGCCTTGAAACTTCTAATAAGTTCTTTCAGTAAATATTCAGAATTCAACCACTTTGTACTAAGTAGAAAATCTTTATTCCTTGGAGTTAAGATATGCTATGAGTAATTGGAAACATATTTTTTCCAGGTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAGGTATATTCTTGCTTGCTTAGACATTTTAATCGTTGGATTAAATTTTTCTCTATGTCATTGATTAAAAACCATCAGTTAAGATTGATCAATGGTCTTCTCTTTCGTACAGCGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCAT</genome_strand>
        <mrna_strand>CTCCGGCAGCCATGGCAGCCAAAGCAGCTGCTATACGCAAGAGTTCACATAGATCGGAAAATTTCATTCAAAAACTCTTTAAAAATCCTAAAATACCTTTTGCTATTGCATTACTCATCGCTGATTCTATCCTCGTCGCGTTGATTATCGCTTACGTTCCAT.........................................................................................................ATACGAAAATTGATTGGGATGCTTATATGTCTCAG...............................................................................................................................................................................................................GTTACTGGTTTTCTCGAAGGAGAGAGGGATTACAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTTTGGCTTTCTCTACATGCTGGATCTAGCAATTGTCGTGTTCATGTACTTGAAGACTGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATTTGCCAAAAATGGCATCTANGGTTGGTAATTTTCAG.............................................................................................................CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7565" ref_strand="-" ref_description="SGN-M7565 C2_At2g47770 [cosii_markers]">
      <seq>attcggatcaagttaccagtacgtttcaatggagaagcctttctggtttccgcgtctatgggctttacatttagcctgtttaggttcttctcttctaatgggtctttctgcttggcttgtttgggctgaaggtgggtttcatcgtcaacctatggctataattttgtatttagctcaattagggttgagtttggcttgggatccagttgtgttcaaagcaggtgctactagaattgggttagtgttatgtgtggctttgtttggagtgttgattggttgttttagggcttttaaaaatgtgaatcctattgctggggatttggttaaaccttgttttggatgggctgtgcttttgagtttagcaaatcttaagcttgtgtatcattaggaagaaataaataatatgcacttgttttttgttttgttttggcttgtgaggcttatgtactgtaaatttacatgttctatatttatgttttaattaaattaaatttacatgtgtgttctataaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="+" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="82935" stop="84044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83235" g_stop="83743" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="530"/>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="+" ref_id="SGN-M7565" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7565" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83235" e_stop="83743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</genome_strand>
        <mrna_strand>ATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8166" ref_strand="+" ref_description="SGN-M8166 C2_At4g02510 [cosii_markers]">
      <seq>cgatttactaatgatgagtccaagtctgatgaatcccgtctctctggtagaaaatcatccatcgtgcaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactactattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccctacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactacagggtcaagctccttcagaagaaacagttgagagaagatttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatgcagaggaagaagctgatgcaggtgcagcagctcccgtagcagttccccttcctgacatggcccttccaccttcttttgatagtgataatcccgcctataggtaccgcttcttggagcccacatcacagttccttgcaaggcctgttctggacacgcatggttgggatcatgattgtggctatgatggtgttaacgtggaacaaagtttagccattgccagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttcgattgctgctaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcatagggaagcaacttgcctatattgtccgaggagaaaccaaattcaaaagcttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggtcactggacttaaagttgaagatcaaatcatcttaggcaagcaatacgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggctaactttgaactgcagaggagggaggcagatttcccaatcggtcaggtgcaatctacattgtctatgtccgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctttctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgctggcgagaagtactcaatctactaaatttcatttccatatcagcattgcatttttggttcattagaccttacatgatgacatattgtctttgtcagttcattgaataatgcttctgttaatttcccatctatttaggattcctactgttatgagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatgaagaggtttgtgttgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103585" stop="36060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="101647" g_length="1639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1639" r_length="1639" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101646" i_stop="99919" i_length="1728">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.428" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99918" g_stop="99875" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1640" r_stop="1682" r_length="43" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-M8166" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1683</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="101647"/>
          <exon e_start="99918" e_stop="99875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTTATATGCTTCCTACAATGTATTGAACAACTGTGATTCTTTTTCTCATTTAATGTACTTCTATTCAACAACATACATCTTACAAACAAGGGTCCACAAGGCAGAGTTTCCTTGATTGTTGATATTTATTGTTTTATAACATGATATTAATTGAACCGACTGATACTTCTTGAGTGGTGATATTACAAGGTTCAATATTGGAGTAGAATTTGGTTAAGGTCACTAATGGCTTATGCTTGGGCAAGGACATAATAGATGTACTATCTCATAGTAGTAGAAGTATTTGCTTGAAAATTTTTCTTATCGAGTTTGTGAAGTCATTTTTTGATCTCTTTTTGGAGAAAATGATTGTTTTACCCGAGTCGAGAAACAACTCTCTACTCTCACAAGATAGAGATAAGGTCTGCGTACGTAACTATTCTCATATCCTATTTGAGATTACATTGAATATGTTGTTGAGTAAATGTTTGTTTGAGTTGTTTGTTGATTTTCATTTTTGGTGCCAATCTTATCTCAAAAGGTGTTTATGCTGTGTTACATAGAGGACAAGGAAGTAAAGAGGGGGGGGGGGAGGGGGGGGTTGGGTTGAATCTGTCATTTCACTCTTTTGTAAAGCATGAACTTTAGAAAGCATTTAGAATTATGTACGAACTATTGCAAAAATGTTTCAAGTAGAAGTGATAGATATTATCAATGTAAAAATTATACCTTATCATTTTATTTTAAAATGTTACTTCACCATTTTTACCAATTAATCATTCATATTTTAATTTTCTAGATATGCATAGAAGCAATTCATCATTTTTTAGTACGAGTAGATATCATTAGCTATTTGCATATTGTAAGCAAATATGGAGAAACAACTAACGATCATGATGGATCTTGAGTCATTTAAAAAAATGTATATTGTTGCTACTTCTTCGTGTCAGATAAAAATAAAATAGGGTGGTGGTTAGAGAAAATTACGTAATAAAATAAATTTATACTATTTGATTACATATCATAGTTGTAGTTTGCTATTATTATCTTTCGCGACAAACATTGTATATTAATTACATGGGCCGACTTCGAATTTGTATAATTAGTCACGTTTGTATATGTATAATTCGCCAGAATATACAAATACATATGTATAATATACAATTATTTAACCTACATATGTATACAGTCACCTCTCTTCCTAGTCTCGCTCGCCTCTCTCCTCCCTTTTCCAATCTCCTCTCTCCTCTCTCTCCCAATCTCTCTTGCCATATATACAAATACATAGGTATAATATACAAATATCTAACCAATATACATATATAATTCACCTTTCTCCCACTCTTTTCTCCCCTCTCTCGCCTCTCTCGTCACTCTCCTAGTCTCGCTCATCTCTTTTCTTCATATAACATGTAGCTACAAATTATAATTATCAAACTATATCTATGGAGAGTAATTAATTATATTTAAGTGGCTATATGTGAAAATTTCTTCGATTTAAACACGTGAGGCTTAAAAATATGATGGAAATGATCTCGGGACAATGTACAAATATTTTCCTAGACTGATCGAAATCTAATAAACGCACGTCTTATTCAACTTTGTGAAAAGTTACAAAATCAAATCATTTCTTTTGATGTTCTTTACCATCGATACTCCCTAAAACCTCTTTATTCTTGTATTTTGTTTCACCTGCTTGATTAAAAGTTGATACAATATGATATGTTCAAGAATTTAAATTTGGTGATTTAGGATAATTACTAAATACAATATATTAAGGAACTTAAGAAGTGGCT</genome_strand>
        <mrna_strand>CGATTTACTAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCGTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTTTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC-TCAGACTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8166-2" ref_strand="+" ref_description="SGN-M8166-2 C2_At4g02510-2 [cosii_markers]">
      <seq>ctggacacgcatggttgggatcatgattgtggctatgatggtgttaatgtggaacagagtttagccattgcaagtcgtttccctgctgcagttactgtgcaaatcaccaaagataagaaggatttcagtatcaatttggactcttctattgctgccaagcacggagaaaatggatcaaccatggctggctttgatattcaaagcataggaaagcaacttgcctatattgtccgaggagaaaccaaattcaaaaacttgaagaagaacaagactgcttgcggaatttctgttacatttctaggtgaaaatatggttactggacttaaagttgaagatcagatcatcttaggcaagcaatatgttctagttggcagtgctggcactgttcgatctcagagtgacacagcttatggggcgaactttgaactgcagaggagggaggcagatttcccaattggtcaggtgcagtctacattgtctatgtctgtcataaagtggagaggtgatttggctctaggtttcaacagtatggcgcaattcgctgtgggacgcaattcgaaggtagctgttcgagcaggaatcaataacaagctcagtgggcaagtaaccgtgaggacaagcagttcagaccatctctctcttgcacttactgctattattccaactgcaattggcatctacaggaagctttggccggatgttggcgagaattactcaatctactaaatttcattttcatatcagcattgcatttttggttcattagaccttatatgatggcatattatctttgtcagttcattgaataatgcttctgttaatttcttcccatccatttaggattcctactgttaagagttataagtcaattttgagtgattgaatgtacttttttgccagatgaaatggagtgtgattgtgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="102870" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102570" g_stop="101649" g_length="922"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="926" r_length="926" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-M8166-2" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8166-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102570" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAA--T-TTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAG-GTTTGTGTTGCT</genome_strand>
        <mrna_strand>CTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAATGTGGAACAGAGTTTAGCCATTGCAAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCTATTGCTGCCAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGAAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAACTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTTACTGGACTTAAAGTTGAAGATCAGATCATCTTAGGCAAGCAATATGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCGAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATTGGTCAGGTGCAGTCTACATTGTCTATGTCTGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGTTGGCGAGAATTACTCAATCTACTAAATTTCATTTTCATATCAGCATTGCATTTTTGGTTCATTAGACCTTATATGATGGCATATTATCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCTTCCCATCCATTTAGGATTCCTACTGTTAAGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGGAGTGTGATTGTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1993" ref_strand="+" ref_description="SGN-M1993 T1421 [cos_markers]">
      <seq>cgatttactaatgatgagtccaagtctgatgaatcccgtctctctggtagaaaatcatccatcgtgcaggaggaatagggatggacataagatactacctaatggccagagctggaggcctcaattactactattaagctactcaatgaagatcttatctgaagcaagtgcactttcaaagcctgaagatccatttgatcaccgtaagctctttggtttccgcacacgctcaccacctcttccctacatgctttcttcaatgttgcagtcacgtgcgcatccaaagctttctgctgagcagggtggtgacaacggtgattcagacattgacttagatgatttgtcagactctgaccaagaagaagaagatgagtatgaccagcttcctcccttcaagcctcttcggaaggctcagcttgctaagctcagcaaagaacagaggaaggcgtactttgaggagtatgactatagggtcaagctccttcagaagaaacagttgagagaagagttaaaaagaatgaaagagatgaaaagtaagggaaaagaggctgcaattgacaatggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099P03-9c0br/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0099P03.2" temp_strand="-" temp_description="C09HBa0099P03.2  EF647601.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0099P03 upload_account_name:spain">
        <position start="103585" stop="102417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103285" g_stop="102717" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099P03.2" gen_strand="-" ref_id="SGN-M1993" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099P03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103285" e_stop="102717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATG</genome_strand>
        <mrna_strand>CGATTTACTAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCGTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTATAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGAGTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="60117" PGL_stop="63612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60117" e_stop="60370"/>
            <exon e_start="61938" e_stop="62041"/>
            <exon e_start="62399" e_stop="62534"/>
            <exon e_start="62704" e_stop="62935"/>
            <exon e_start="63082" e_stop="63612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.176" e_score="0.996"/>
          <exon-only e_score="0.863"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="60117" e_stop="60370" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="60371" i_stop="61937" i_length="1567"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61938" e_stop="62041" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62042" i_stop="62398" i_length="357"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62399" e_stop="62534" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.974">
            <gDNA_intron_boundary i_start="62535" i_stop="62703" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="62704" e_stop="62935" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.176">
            <gDNA_intron_boundary i_start="62936" i_stop="63081" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="0.863">
            <gDNA_exon_boundary e_start="63082" e_stop="63612" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60117" stop="60370"/>
              <exon start="61938" stop="62041"/>
              <exon start="62399" stop="62534"/>
              <exon start="62704" stop="62935"/>
              <exon start="63082" stop="63612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTTCATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATCGTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGCCCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCTTCTCTAAAGGACGG : GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATCCCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG : GGGGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGTTTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAG : GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACCTTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGGCATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATGTCGCTG : GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAACAGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTGATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCTGTTAGTGAGACAATTTCCCCTTTACTCTTCCTGTCAATTTCTAGAAGTTGAGTGGAAAACGTCCGGAGTCCTTCAATTTTACCTTGAAGAATGAGATGTCCTGTATGAGATGTCCTGTCACTAGTCTAGTTCTCGTTGCCATGTATCCTGCTTAACAGATCAAAAGATATTGTTTACCTCCTTCGTTTGAAGAATCCATTTCCATCACATTTACATTGTCGGAGGATAATTAAAGAGAAAAAGTCAGTAACATATTTTGCTAGGTTTGCAACAAATGTCTTTGTTTCATGAGCAAAAAGCTATCCCATTACGTATTTGTTCTCTCTGTCTCTCTTTTTCCTTATTAAAAATTCCGGACTTGAACATATTCTCT</gDNA_template>
            <first_frame> L  T  W  P  L  Q  L  F  P  P  L  I  T  S  I  S  A  S  S  L  H  H  L  P  N  S  Q  S  L  H  N  Y  A  *  I  F  P  R  R  I  V  F  H  S  S  F  V  L  L  L  L  R  P  L  R  H  H  R  R  R  P  K  S  V  N  P  L  P  L  L  S  P  V  S  M  P  A  S  T  S  S  L  K  D  G :   *  K  M  L  L  C  Y  S  T  Q  H  L  L  *  I  P  T  L  R  R  L  K  L  H  F  I  T  K  H  V  A  M  P  T   : G  G  K  E  R  K  L  L  S  V  Y  A  L  L  *  K  S  I  T  L  S  L  A  Q  S  *  M  I  Q  I  W  L  P  S  E  H  C  L  N  L  R  N  Y  R  K  R :   L  G  *  E  G  K  T  *  V  T  V  S  V  E  T  L  S  S  S  V  R  Y  K  H  R  L  G  G  S  E  D  S  F  M  W  H  S  L  L  L  L  E  F  L  H  F  S  L  Y  P  G  *  S  V  Q  F  K  V  E  M  V  L  L  I  *  G  R  L  Q  E  M  L  L  *  M  S  L  :  V  L  L  F  L  W  L  C  C  F  G  T  T  K  K  R  R  N  S  L  H  K  Y  C  V  M  K  H  Y  Q  G  C  L  C  A  F  Q  L  I  G  L  L  N  S  S  S  *  E  T  P  *  G  L  L  V  R  Q  F  P  L  Y  S  S  C  Q  F  L  E  V  E  W  K  T  S  G  V  L  Q  F  Y  L  E  E  *  D  V  L  Y  E  M  S  C  H  *  S  S  S  R  C  H  V  S  C  L  T  D  Q  K  I  L  F  T  S  F  V  *  R  I  H  F  H  H  I  Y  I  V  G  G  *  L  K  R  K  S  Q  *  H  I  L  L  G  L  Q  Q  M  S  L  F  H  E  Q  K  A  I  P  L  R  I  C  S  L  C  L  S  F  S  L  L  K  I  P  D  L  N  I  F  S </first_frame>
            <second_frame>  *  H  G  H  Y  N  S  S  L  L  S  S  P  P  F  L  L  L  L  F  I  I  F  Q  I  L  N  H  Y  T  I  M  P  K  F  S  P  E  E  S  Y  F  T  R  H  L  F  F  F  Y  F  A  P  S  A  I  I  V  V  A  P  S  Q  *  T  H  S  H  C  *  V  L  C  Q  C  R  P  R  P  L  L  *  R  T   : G  E  R  C  S  C  A  I  R  H  S  T  Y  F  K  S  Q  P  *  G  G  S  S  C  I  L  *  Q  S  M  L  P  C  L  Q  :  G  G  R  K  E  S  C  *  V  F  T  H  C  F  E  R  V  *  P  *  V  W  H  N  L  K  *  S  R  F  G  F  L  Q  S  I  A  *  I  *  G  T  T  G  R   : G  *  V  R  R  G  R  H  R  L  Q  F  P  *  R  P  *  A  H  Q  *  G  T  S  T  V  *  G  G  Q  K  I  L  L  C  G  I  H  C  C  C  W  N  F  Y  I  F  H  Y  T  Q  V  N  P  C  N  S  R  W  R  W  C  S  *  F  R  G  D  C  R  K  C  C  Y  K  C  R  W :   Y  C  C  F  C  G  F  V  V  L  G  Q  Q  K  R  G  G  T  A  C  T  N  I  A  *  *  N  T  I  K  A  A  F  A  P  F  N  *  *  D  C  *  T  R  P  A  K  R  H  R  E  A  C  *  *  D  N  F  P  F  T  L  P  V  N  F  *  K  L  S  G  K  R  P  E  S  F  N  F  T  L  K  N  E  M  S  C  M  R  C  P  V  T  S  L  V  L  V  A  M  Y  P  A  *  Q  I  K  R  Y  C  L  P  P  S  F  E  E  S  I  S  I  T  F  T  L  S  E  D  N  *  R  E  K  V  S  N  I  F  C  *  V  C  N  K  C  L  C  F  M  S  K  K  L  S  H  Y  V  F  V  L  S  V  S  L  F  P  Y  *  K  F  R  T  *  T  Y  S   </second_frame>
            <third_frame>   D  M  A  I  T  T  L  P  S  S  H  H  L  H  F  C  F  F  S  S  S  S  S  K  F  S  I  T  T  Q  L  C  L  N  F  P  P  K  N  R  I  S  L  V  I  C  S  S  S  T  S  P  P  P  P  S  S  S  S  P  Q  V  S  E  P  T  P  T  A  E  S  C  V  N  A  G  L  D  L  F  S  K  G  R  :  V  K  D  A  L  V  L  F  D  T  A  L  T  L  N  P  N  P  E  E  A  Q  A  A  F  Y  N  K  A  C  C  H  A  Y  R :   G  E  G  K  K  A  A  E  C  L  R  T  A  L  K  E  Y  N  L  K  F  G  T  I  L  N  D  P  D  L  A  S  F  R  A  L  P  E  F  K  E  L  Q  E  E  :  A  R  L  G  G  E  D  I  G  Y  S  F  R  R  D  L  K  L  I  S  E  V  Q  A  P  F  R  G  V  R  R  F  F  Y  V  A  F  I  A  A  A  G  I  S  T  F  F  T  I  P  R  L  I  R  A  I  Q  G  G  D  G  A  P  D  L  G  A  T  A  G  N  A  A  I  N  V  A   : G  I  A  V  F  V  A  L  L  F  W  D  N  K  K  E  E  E  Q  L  A  Q  I  L  R  D  E  T  L  S  R  L  P  L  R  L  S  T  D  R  I  V  E  L  V  Q  L  R  D  T  V  R  P  V  S  E  T  I  S  P  L  L  F  L  S  I  S  R  S  *  V  E  N  V  R  S  P  S  I  L  P  *  R  M  R  C  P  V  *  D  V  L  S  L  V  *  F  S  L  P  C  I  L  L  N  R  S  K  D  I  V  Y  L  L  R  L  K  N  P  F  P  S  H  L  H  C  R  R  I  I  K  E  K  K  S  V  T  Y  F  A  R  F  A  T  N  V  F  V  S  *  A  K  S  Y  P  I  T  Y  L  F  S  L  S  L  F  F  L  I  K  N  S  G  L  E  H  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60119" stop="60370"/>
                    <exon start="61938" stop="62041"/>
                    <exon start="62399" stop="62534"/>
                    <exon start="62704" stop="62935"/>
                    <exon start="63082" stop="63290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMAITTLPSSHHLHFCFFSSSSSKFSITTQLCLNFPPKNRISLVICSSSTSPPPPSSSSPQVSEPTPTAESCVNAGLDLFSKGRVKDALVLFDTALTLNPNPEEAQAAFYNKACCHAYRGEGKKAAECLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFIAAAGISTFFTIPRLIRAIQGGDGAPDLGATAGNAAINVAGIAVFVALLFWDNKKEEEQLAQILRDETLSRLPLRLSTDRIVELVQLRDTVRPVSETISPLLFLSISRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="76493" PGL_stop="73621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76493" e_stop="76335"/>
            <exon e_start="76229" e_stop="76195"/>
            <exon e_start="75987" e_stop="75850"/>
            <exon e_start="75040" e_stop="74972"/>
            <exon e_start="73947" e_stop="73790"/>
            <exon e_start="73680" e_stop="73621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.871" e_score="0.912"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.440" e_score="0.993"/>
          <exon-intron don_prob="0.843" acc_prob="0.936" e_score="0.942"/>
          <exon-intron don_prob="0.987" acc_prob="0.805" e_score="0.987"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="76493" e_stop="76335" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.871">
            <gDNA_intron_boundary i_start="76334" i_stop="76230" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76229" e_stop="76195" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76194" i_stop="75988" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="75987" e_stop="75850" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.440">
            <gDNA_intron_boundary i_start="75849" i_stop="75041" i_length="809"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="75040" e_stop="74972" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.936">
            <gDNA_intron_boundary i_start="74971" i_stop="73948" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="73947" e_stop="73790" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.805">
            <gDNA_intron_boundary i_start="73789" i_stop="73681" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="73680" e_stop="73621" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76493" stop="76335"/>
              <exon start="76229" stop="76195"/>
              <exon start="75987" stop="75850"/>
              <exon start="75040" stop="74972"/>
              <exon start="73947" stop="73790"/>
              <exon start="73680" stop="73621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAAGAGTAATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGCTATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCAT : ATACGAAAATTGATTGGGATGCTTATATGTCTCAG : GTTACTGGTTTTCTCGAAGGAGAGAGGGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTATATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG : ATTCTTTTTGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGTG : GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGTTCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAATTATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG : CGGAGCTGTTTCCATAAAGATGAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCAT</gDNA_template>
            <first_frame> L  R  Q  P  W  P  P  K  Q  L  L  Y  A  R  V  I  D  R  R  I  S  F  K  N  S  L  K  I  L  K  Y  L  L  L  L  Q  Y  S  L  L  M  P  S  S  L  R  *  L  S  L  T  F  H  :  I  R  K  L  I  G  M  L  I  C  L  R :   L  L  V  F  S  K  E  R  G  I  I  V  T  *  K  V  T  R  G  L  *  F  T  Q  Q  A  F  F  I  F  T  L  L  Y  N  M  L  L  E  V  K  S  I  L  L  R :   F  F  L  A  F  S  T  C  W  I  L  Q  L  S  C  S  S  T  *  R  L  M  W :   Y  L  G  G  L  S  P  C  F  L  C  R  K  E  F  T  L  S  L  F  F  D  Y  L  M  I  V  L  P  L  L  S  S  M  L  H  W  S  Q  L  S  A  K  N  G  I  *  G  W  *  F  S   : A  E  L  F  P  *  R  *  M  C  S  C  M  H  H  L  C  C  S  S  </first_frame>
            <second_frame>  S  G  S  H  G  R  Q  S  S  C  Y  T  Q  E  *  *  I  G  E  F  H  S  K  T  R  *  K  S  *  N  T  F  C  Y  C  N  T  H  C  *  C  H  P  R  C  V  D  Y  R  L  R  S  I :   Y  E  N  *  L  G  C  L  Y  V  S   : G  Y  W  F  S  R  R  R  E  G  L  *  *  L  E  R  *  H  G  A  S  S  L  P  S  R  L  S  L  Y  L  L  C  Y  T  I  C  Y  W  R  S  S  L  S  C  S   : D  S  F  W  L  S  L  R  A  G  S  C  N  C  L  V  H  L  L  E  D  *  C   : G  T  L  V  G  S  L  L  A  F  S  V  E  K  S  S  L  Y  L  C  S  S  I  I  *  *  L  F  C  H  Y  S  P  P  C  C  I  G  L  N  Y  L  P  K  M  A  S  R  V  G  N  F  Q  :  R  S  C  F  H  K  D  E  C  A  P  V  C  T  T  S  V  A  P  H </second_frame>
            <third_frame>   P  A  A  M  A  A  K  A  A  A  I  R  K  S  N  R  S  E  N  F  I  Q  K  L  V  K  N  P  K  I  P  F  A  I  A  I  L  I  A  D  A  I  L  V  A  L  I  I  A  Y  V  P   : Y  T  K  I  D  W  D  A  Y  M  S  Q  :  V  T  G  F  L  E  G  E  R  D  Y  S  N  L  K  G  D  T  G  P  L  V  Y  P  A  G  F  L  Y  I  Y  S  A  I  Q  Y  V  T  G  G  Q  V  Y  P  A  Q  :  I  L  F  G  F  L  Y  V  L  D  L  A  I  V  L  F  I  Y  L  K  T  D  V  :  V  P  W  W  A  L  S  L  L  S  L  S  K  R  V  H  S  I  F  V  L  R  L  F  N  D  C  F  A  T  T  L  L  H  A  A  L  V  S  I  I  C  Q  K  W  H  L  G  L  V  I  F  S :   G  A  V  S  I  K  M  N  V  L  L  Y  A  P  P  L  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76491" stop="76335"/>
                    <exon start="76229" stop="76195"/>
                    <exon start="75987" stop="75850"/>
                    <exon start="75040" stop="74972"/>
                    <exon start="73947" stop="73790"/>
                    <exon start="73680" stop="73623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAAMAAKAAAIRKSNRSENFIQKLVKNPKIPFAIAILIADAILVALIIAYVPYTKIDWDAYMSQVTGFLEGERDYSNLKGDTGPLVYPAGFLYIYSAIQYVTGGQVYPAQILFGFLYVLDLAIVLFIYLKTDVVPWWALSLLSLSKRVHSIFVLRLFNDCFATTLLHAALVSIICQKWHLGLVIFSGAVSIKMNVLLYAPPLLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="83235" PGL_stop="83743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83235" e_stop="83743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83235" e_stop="83743" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83235" stop="83743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7565" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATGGGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGTTTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATTAGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTTAGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGTGAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTTAGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGTTTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTAATTAAATTAAATTTACATGTGTGTTCTAT</gDNA_template>
            <first_frame> I  R  I  K  L  P  V  R  F  N  G  E  A  F  L  V  S  A  S  M  G  F  T  F  S  L  F  R  F  F  S  S  N  G  S  F  C  L  A  C  L  G  *  R  W  V  S  S  S  T  Y  G  Y  N  F  V  F  S  S  I  R  V  E  F  G  L  G  S  S  C  V  Q  S  R  C  Y  *  N  W  V  S  V  M  C  G  F  V  W  S  V  D  W  L  F  *  G  F  *  K  C  E  S  Y  C  W  G  F  G  *  T  L  F  W  M  G  C  A  F  E  F  S  K  S  *  A  C  V  S  L  G  R  N  K  *  Y  A  L  V  F  C  F  V  L  A  C  E  A  Y  V  L  *  I  Y  M  F  Y  I  Y  V  L  I  K  L  N  L  H  V  C  S   </first_frame>
            <second_frame>  F  G  S  S  Y  Q  Y  V  S  M  E  K  P  F  W  F  P  R  L  W  A  L  H  L  A  C  L  G  S  S  L  L  M  G  L  S  A  W  L  V  W  A  E  G  G  F  H  R  Q  P  M  A  I  I  L  Y  L  A  Q  L  G  L  S  L  A  W  D  P  V  V  F  K  A  G  A  T  R  I  G  L  V  L  C  V  A  L  F  G  V  L  I  G  C  F  R  A  F  K  N  V  N  P  I  A  G  D  L  V  K  P  C  F  G  W  A  V  L  L  S  L  A  N  L  K  L  V  Y  H  *  E  E  I  N  N  M  H  L  F  F  V  L  F  W  L  V  R  L  M  Y  C  K  F  T  C  S  I  F  M  F  *  L  N  *  I  Y  M  C  V  L  </second_frame>
            <third_frame>   S  D  Q  V  T  S  T  F  Q  W  R  S  L  S  G  F  R  V  Y  G  L  Y  I  *  P  V  *  V  L  L  F  *  W  V  F  L  L  G  L  F  G  L  K  V  G  F  I  V  N  L  W  L  *  F  C  I  *  L  N  *  G  *  V  W  L  G  I  Q  L  C  S  K  Q  V  L  L  E  L  G  *  C  Y  V  W  L  C  L  E  C  *  L  V  V  L  G  L  L  K  M  *  I  L  L  L  G  I  W  L  N  L  V  L  D  G  L  C  F  *  V  *  Q  I  L  S  L  C  I  I  R  K  K  *  I  I  C  T  C  F  L  F  C  F  G  L  *  G  L  C  T  V  N  L  H  V  L  Y  L  C  F  N  *  I  K  F  T  C  V  F  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83236" stop="83622"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSSYQYVSMEKPFWFPRLWALHLACLGSSLLMGLSAWLVWAEGGFHRQPMAIILYLAQLGLSLAWDPVVFKAGATRIGLVLCVALFGVLIGCFRAFKNVNPIAGDLVKPCFGWAVLLSLANLKLVYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="103285" PGL_stop="99875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103285" e_stop="101647"/>
            <exon e_start="99918" e_stop="99875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.428" e_score="0.998"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="103285" e_stop="101647" e_length="1639"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.428">
            <gDNA_intron_boundary i_start="101646" i_stop="99919" i_length="1728"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="99918" e_stop="99875" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="101647"/>
              <exon start="99918" stop="99875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103285" stop="102717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102570" stop="101649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8166-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATTTACGAATGATGAGTCCAAGTCTGATGAATCCCGTCTCTCTGGTAGAAAATCATCCATCTTGCAGGAGGAATAGGGATGGACATAAGATACTACCTAATGGCCAGAGCTGGAGGCCTCAATTACTACTATTAAGCTACTCAATGAAGATCTTATCTGAAGCAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCACACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAAAGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGTCAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTCGGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATGACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAGAGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTGATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTTTTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTGCAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACGTGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCAAAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAAATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTGTCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTGTTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAGGCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTTATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAATCTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTATGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACAAGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTACTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGAAGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACCTTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCATCTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTTTTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT : GATAATTACTAAATACAATATATTAAGGAACTTAAGAAGTGGCT</gDNA_template>
            <first_frame> R  F  T  N  D  E  S  K  S  D  E  S  R  L  S  G  R  K  S  S  I  L  Q  E  E  *  G  W  T  *  D  T  T  *  W  P  E  L  E  A  S  I  T  T  I  K  L  L  N  E  D  L  I  *  S  K  C  T  F  K  A  *  R  S  I  *  S  P  *  A  L  W  F  P  H  T  L  T  T  S  S  L  H  A  F  F  N  V  A  V  T  C  A  S  K  A  F  C  *  A  G  W  *  Q  R  *  F  R  H  *  L  R  *  F  V  R  L  *  P  R  R  R  R  *  V  *  P  A  S  S  L  Q  A  S  S  E  G  S  A  C  *  A  Q  Q  R  T  E  E  G  V  L  *  G  V  *  L  Q  G  Q  A  P  S  E  E  T  V  E  R  R  F  K  K  N  E  R  D  E  K  *  G  K  R  G  C  N  *  Q  W  L  C  R  G  R  S  *  C  R  C  S  S  S  R  S  S  S  P  S  *  H  G  P  S  T  F  F  *  *  *  *  S  R  L  *  V  P  L  L  G  A  H  I  T  V  P  C  K  A  C  S  G  H  A  W  L  G  S  *  L  W  L  *  W  C  *  R  G  T  K  F  S  H  C  Q  S  F  P  C  C  S  Y  C  A  N  H  Q  R  *  E  G  F  Q  Y  Q  F  G  L  F  D  C  C  *  A  R  R  K  W  I  N  H  G  W  L  *  Y  S  K  H  R  E  A  T  C  L  Y  C  P  R  R  N  Q  I  Q  K  L  E  E  E  Q  D  C  L  R  N  F  C  Y  I  S  R  *  K  Y  G  H  W  T  *  S  *  R  S  N  H  L  R  Q  A  I  R  S  S  W  Q  C  W  H  C  S  I  S  E  *  H  S  L  W  G  *  L  *  T  A  E  E  G  G  R  F  P  N  R  S  G  A  I  Y  I  V  Y  V  R  H  K  V  E  R  *  F  G  S  R  F  Q  Q  Y  G  A  I  R  C  G  T  Q  F  E  G  S  C  S  S  R  N  Q  *  Q  A  Q  W  A  S  N  R  E  D  K  Q  F  R  P  S  L  S  C  T  Y  C  Y  Y  S  N  C  N  W  H  L  Q  E  A  L  A  G  C  W  R  E  V  L  N  L  L  N  F  I  S  I  S  A  L  H  F  W  F  I  R  P  Y  M  M  T  Y  C  L  C  Q  F  I  E  *  C  F  C  *  F  P  I  Y  L  G  F  L  L  L  *  V  I  S  Q  F  *  V  I  E  C  T  F  L  P  D  E  M  K  R  F  V  L  L   : *  *  L  L  N  T  I  Y  *  G  T  *  E  V  A </first_frame>
            <second_frame>  D  L  R  M  M  S  P  S  L  M  N  P  V  S  L  V  E  N  H  P  S  C  R  R  N  R  D  G  H  K  I  L  P  N  G  Q  S  W  R  P  Q  L  L  L  L  S  Y  S  M  K  I  L  S  E  A  S  A  L  S  K  P  E  D  P  F  D  H  R  K  L  F  G  F  R  T  R  S  P  P  L  P  Y  M  L  S  S  M  L  Q  S  R  A  H  P  K  L  S  A  E  Q  G  G  D  N  G  D  S  D  I  D  L  D  D  L  S  D  S  D  Q  E  E  E  D  E  Y  D  Q  L  P  P  F  K  P  L  R  K  A  Q  L  A  K  L  S  K  E  Q  R  K  A  Y  F  E  E  Y  D  Y  R  V  K  L  L  Q  K  K  Q  L  R  E  D  L  K  R  M  K  E  M  K  S  K  G  K  E  A  A  I  D  N  G  Y  A  E  E  E  A  D  A  G  A  A  A  P  V  A  V  P  L  P  D  M  A  L  P  P  S  F  D  S  D  N  P  A  Y  R  Y  R  F  L  E  P  T  S  Q  F  L  A  R  P  V  L  D  T  H  G  W  D  H  D  C  G  Y  D  G  V  N  V  E  Q  S  L  A  I  A  S  R  F  P  A  A  V  T  V  Q  I  T  K  D  K  K  D  F  S  I  N  L  D  S  S  I  A  A  K  H  G  E  N  G  S  T  M  A  G  F  D  I  Q  S  I  G  K  Q  L  A  Y  I  V  R  G  E  T  K  F  K  S  L  K  K  N  K  T  A  C  G  I  S  V  T  F  L  G  E  N  M  V  T  G  L  K  V  E  D  Q  I  I  L  G  K  Q  Y  V  L  V  G  S  A  G  T  V  R  S  Q  S  D  T  A  Y  G  A  N  F  E  L  Q  R  R  E  A  D  F  P  I  G  Q  V  Q  S  T  L  S  M  S  V  I  K  W  R  G  D  L  A  L  G  F  N  S  M  A  Q  F  A  V  G  R  N  S  K  V  A  V  R  A  G  I  N  N  K  L  S  G  Q  V  T  V  R  T  S  S  S  D  H  L  S  L  A  L  T  A  I  I  P  T  A  I  G  I  Y  R  K  L  W  P  D  A  G  E  K  Y  S  I  Y  *  I  S  F  P  Y  Q  H  C  I  F  G  S  L  D  L  T  *  *  H  I  V  F  V  S  S  L  N  N  A  S  V  N  F  P  S  I  *  D  S  Y  C  Y  E  L  *  V  N  F  E  *  L  N  V  L  F  C  Q  M  K  *  R  G  L  C  C  F  :  D  N  Y  *  I  Q  Y  I  K  E  L  K  K  W   </second_frame>
            <third_frame>   I  Y  E  *  *  V  Q  V  *  *  I  P  S  L  W  *  K  I  I  H  L  A  G  G  I  G  M  D  I  R  Y  Y  L  M  A  R  A  G  G  L  N  Y  Y  Y  *  A  T  Q  *  R  S  Y  L  K  Q  V  H  F  Q  S  L  K  I  H  L  I  T  V  S  S  L  V  S  A  H  A  H  H  L  F  P  T  C  F  L  Q  C  C  S  H  V  R  I  Q  S  F  L  L  S  R  V  V  T  T  V  I  Q  T  L  T  *  M  I  C  Q  T  L  T  K  K  K  K  M  S  M  T  S  F  L  P  S  S  L  F  G  R  L  S  L  L  S  S  A  K  N  R  G  R  R  T  L  R  S  M  T  T  G  S  S  S  F  R  R  N  S  *  E  K  I  *  K  E  *  K  R  *  K  V  R  E  K  R  L  Q  L  T  M  V  M  Q  R  K  K  L  M  Q  V  Q  Q  L  P  *  Q  F  P  F  L  T  W  P  F  H  L  L  L  I  V  I  I  P  P  I  G  T  A  S  W  S  P  H  H  S  S  L  Q  G  L  F  W  T  R  M  V  G  I  M  I  V  A  M  M  V  L  T  W  N  K  V  *  P  L  P  V  V  S  L  L  Q  L  L  C  K  S  P  K  I  R  R  I  S  V  S  I  W  T  L  R  L  L  L  S  T  E  K  M  D  Q  P  W  L  A  L  I  F  K  A  *  G  S  N  L  P  I  L  S  E  E  K  P  N  S  K  A  *  R  R  T  R  L  L  A  E  F  L  L  H  F  *  V  K  I  W  S  L  D  L  K  L  K  I  K  S  S  *  A  S  N  T  F  *  L  A  V  L  A  L  F  D  L  R  V  T  Q  L  M  G  L  T  L  N  C  R  G  G  R  Q  I  S  Q  S  V  R  C  N  L  H  C  L  C  P  S  *  S  G  E  V  I  W  L  *  V  S  T  V  W  R  N  S  L  W  D  A  I  R  R  *  L  F  E  Q  E  S  I  T  S  S  V  G  K  *  P  *  G  Q  A  V  Q  T  I  S  L  L  H  L  L  L  L  F  Q  L  Q  L  A  S  T  G  S  F  G  R  M  L  A  R  S  T  Q  S  T  K  F  H  F  H  I  S  I  A  F  L  V  H  *  T  L  H  D  D  I  L  S  L  S  V  H  *  I  M  L  L  L  I  S  H  L  F  R  I  P  T  V  M  S  Y  K  S  I  L  S  D  *  M  Y  F  F  A  R  *  N  E  E  V  C  V  A  L :   I  I  T  K  Y  N  I  L  R  N  L  R  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099P03.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103284" stop="101845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLRMMSPSLMNPVSLVENHPSCRRNRDGHKILPNGQSWRPQLLLLSYSMKILSEASALSKPEDPFDHRKLFGFRTRSPPLPYMLSSMLQSRAHPKLSAEQGGDNGDSDIDLDDLSDSDQEEEDEYDQLPPFKPLRKAQLAKLSKEQRKAYFEEYDYRVKLLQKKQLREDLKRMKEMKSKGKEAAIDNGYAEEEADAGAAAPVAVPLPDMALPPSFDSDNPAYRYRFLEPTSQFLARPVLDTHGWDHDCGYDGVNVEQSLAIASRFPAAVTVQITKDKKDFSINLDSSIAAKHGENGSTMAGFDIQSIGKQLAYIVRGETKFKSLKKNKTACGISVTFLGENMVTGLKVEDQIILGKQYVLVGSAGTVRSQSDTAYGANFELQRREADFPIGQVQSTLSMSVIKWRGDLALGFNSMAQFAVGRNSKVAVRAGINNKLSGQVTVRTSSSDHLSLALTAIIPTAIGIYRKLWPDAGEKYSIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 59 chains have been computed
$ 
$ memory statistics:
$ 140192 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 23365 bytes was the average size of a spliced alignment
$ 9376 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2344 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 61 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 20:59:45
-->
