<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:37:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338284" ref_strand="+" ref_description="SGN-U338284        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNase(evalue: 2e-76, score=161)">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="8369" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8069" g_stop="7330" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U338284" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8069" e_stop="7330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCGACCGCTTCTAATGGACACAGGTTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCGATAACCAATAAAGTGGTGGACGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGCACAAATCGCAACAGTCATTTGACGAAGGAGATATGTGAGCAATTTAAGATTGTTCATCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTTTGAGAAAAATGATCGACAAACAGCGAGGTTGGCATGAAATGTTGCCATATGCTTTGCTAGGTTATCAAACAACGGTCAGAACATCGACTGGGTCTACTCCATACTTGCTAGTATATGGAACAGAAGAAGTCATTCCTGTTGAAGTCGAGATACCGTCGTTGAGGATCATCCAAGAAACTGAATTAAGTAATGCCGAATGGATTAGTAAACGGATTCATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCACCGTTTGCCATGGTCA-TTTTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGT-TGCGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315390" ref_strand="+" ref_description="SGN-U315390        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gaaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="22237" stop="23090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22537" g_stop="22784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="263"/>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-U315390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22537" e_stop="22784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="37255" stop="38140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37555" g_stop="37840" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37555" e_stop="37840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCATTGGTCTGATCACACAAGAAGGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTATTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCAAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38579" stop="37547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38279" g_stop="37847" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38279" e_stop="37847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTTTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTAATCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="37614" stop="38767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37914" g_stop="38467" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37914" e_stop="38467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATTCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCATTCTTCAAAGGTGCTGAATCTGGGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGTCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39654" stop="37618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39354" g_stop="37918" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39354" e_stop="37918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGACCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCCCAGATTCAGCACCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCT-TACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38241" stop="40254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38541" g_stop="38715" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38716" i_stop="39459" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39460" g_stop="39946" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="662" r_length="487" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38541" e_stop="38715"/>
          <exon e_start="39460" e_stop="39946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTACTCAGTTCGACCCATTCAGTCTTTACTACAGACTGTAGTTGGGGGTCCACATCAGACCGGTCAACATTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAATAGAGTTATAGACCCCCAATAGCTAGAGGAAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGAAAGACAAACGATAGTGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCTTATTTTCTTATGTATCTTCCTCCTTTGCTAATGGTCTTAATTTACATTGTGAATTACTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTATGGGGAGCAATACTCTTGTAGATTTGGTTATCTTAAAAATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGGTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATATCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGATTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTTTAA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39658" stop="38500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39358" g_stop="38800" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39358" e_stop="38800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40265" stop="38911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39211" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39865" stop="38939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39565" g_stop="39235" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39565" e_stop="39235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40337" stop="39096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40037" g_stop="39379" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40037" e_stop="39379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGT-TACAAGACAAGACCTATACACCTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40857" stop="39545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40557" g_stop="39845" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40557" e_stop="39845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338223" ref_strand="+" ref_description="SGN-U338223        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L22 family protein, similar to GB:Z67753 from (Odontella sinensis) | chr1:19510151-19512543 FORWARD | Aliases: F19K6.5, F19K6_5(evalue: 6e-43, score=172) genbank/nr: gi|54290412|dbj|BAD61282.1| 50S ribosomal protein L22-like [Oryza sativa (japonica cultivar-group)] (evalue: 6e-42, score=175)">
      <seq>gggcgattggcggccaatcggccgaattgaagtttctctcttggtgtctcttggcttcaacaacagccctaaaacaccttagggttcgtgagtatcgtcccacttgttaataaaattttgaaggagagtttcagttcttgaagtatcctctgtgttttctctctttctctatgcaatagtctttgaattccctaaatcttgaaagttgaaggcattattgtcagaaaaatctcctaatttttgaagcttgaagcccaaagaaggtgaatttgtttgctaaattagttcgcggtatgtgcgttgaagatgcattgttacagttgcaagtgacagtaaagcgagcttccaaaactatctatcaggttatacacttagcttgggcaaatgcagtgcatagcgatggatttgattcaaatcgtcttcttgttcgtaaaatgacaaataaaaaatttgcatattttcatctcatttctacccttttggagtacttcttccttatcatgttttgtgcagctgaggcatttcttagaaaaggactttttaagaaaaggttgtccaaccatgctaaaggaaagtatggactgatggtgaggccagaatgtagaatgattgtggtacttagggagataacatcggtggaggaggcggagatagctaagttgagagtaagcaacttcaaaaagctaaccaaacgcaaaaaatgtcttgtccctcataagctcattaagactactccaatatggaacccaaggtgaaagttagaagtagtggcgcaagtattgttggtgaatgagccccgatattatcatagtttaatttttcgttagaaacgtatgcaatcacataagatcagtggttgatgaaaatccactgcatcttgccacatttcttttttgtaagagatgtaacttgacttaatacctgacttctgttttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="69118" stop="63138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68813" g_stop="68593" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="253" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68592" i_stop="64344" i_length="4249">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64343" g_stop="64235" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="362" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64234" i_stop="64017" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64016" g_stop="63438" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="941" r_length="579" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U338223" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68813" e_stop="68593"/>
          <exon e_start="64343" e_stop="64235"/>
          <exon e_start="64016" e_stop="63438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAGGTATTTTCTTTGGATAAAAATATTTCATCTAGTATCTACATCTAAAATAAGTTTATTCCTCCATATTCATCTCCCTCTTCTTCTTTTTTTTGACACAATCTTCCATTTTTCTTTCTGATGATTAAATATTATGTGATTGGGCACTTATTGATACTCATTGTTTTGTTAGCACCTAAAATGGTAGTTTTGTAGGTAAGGTTGGGGGTTTAGGGTCAAAGAGGAGCTAATTGAGAGTTTATTTAAGGAATTTCTCTGTTAAGGTTGCATATTTCTAGGACTGCCAATAATTTTTTGTAAGGCTGGCATTGCAATTTTTTTCTATTAGGCGATGAATTAATTGAGTATTTTTACCATTAGTGTCTTTAATTTCAGTACCTAGTTTGTATGCTTTGATTTTGAATGGTTCTTTTTATTGTATTACCAAGAAATAAAATTGTTAATGAGATTTATTAAAGCATCTTAATTTTTTTTATTTGTTCAATGAGTAGCTTGCGGATTAGATGAGAAAGAAACAAAATTATCATTGAGCTTTTTCGAAACATCTGAAATATTCAGTAGCATTCTAGTTTATTTCTACTTTCTCTTTTTGAAGTTTTTGCAATTTCTTGAACAATATTGATTCGAAACTAGTTGTCAGTCTTCGCTTTCAGTCAATATTTTAAATATATAGTTACTTAGTGATCTATAAAGTTTTCATGAGTTGAATAGTTGAGTTTAGAATCCTTGAGCAAAATGCACTTTAAGAAAGTTGTTGAGAAGTAGTAGTAATTAATTACTACGAGAGAAATTGATTTGTTTCAACACTCTATTGGTTAAAGTTCGTATAATTTAGTTTGAGTGAATTCTATTTCTACTTACTTTTGATCAATTTATTGTATTTTTATTAGTTTAAAGTTAAGTTATCCCAAGAATTTTAAAAGTATGTGTGTCATCTAATATACTTCATAGTAGTTACCTCTTTTTTGGTGTTTAAAATGTTGTTTGAATTGTTCTTTTCTACTTGTGATGCATTTTTGAAATCTTAAGCTACTTGGAAATTCATGTTCTTTGTCATTGTGGTTCTTGATTTCAATTAGATTCTAAATGTTTACTGAAATTGTTTGGATCCTCATGTAGTTTGATTAAAAAAATTGCTTGGATCCTGATTAGGATGATTTGACATGTTTAATAGAAACTAATGTCCATCTTAGTAAGCTTTTTATCCTAAATTATTATTCATCTAACTCTTACATATAATCAGAGGGTATGGCACCGAGTAAAAAATGGATGCAACTTGTTGATGATCGACTAACTGAGGCCTACTTTATGAGGATAGAAATTTTTTTAAATTAAGTTTTTCAAAGAGCAGGAGAAATGTATGAAATACGATGTCCTTATGTCAAATGTTGTTATACCATAGTAGGAACACATGAGACAGTCTGAACACACTTGAAAGTTTATGGAATAATTAAAAATTATACCTTTTGGTATCAAGGAAGTTTTAGGTGAACCAGAATCAGAATGTGAAGATAGGGATGACAATGAAGTAGAAAATTGTGAAAATTAGGATGAAATAAGAGAAATTTTGAGATTTCTATCCTAATCATTATGGACATACTGCATATGTTGATTTTAATGAATCACATGAAGAGGAACCAAATATTAAAGATAAAAAGTTTTATAGCCTATTGGGAGACTTTGATAAGCCACTTTATCAAGGTTCAAAACTTTCAACTTTGATTAAGTTTCTTCACATAAAGTATGGGTCGTTGGAGTAATGAGTCATTTACAATGTTGTCAAAATTTTTAAAAGATGAGGTGTTGCCTGATGAAGCCGGTTTGCCAAATACATATTATAGAGCAAAGAAGATAATTCAGAATCTTGGACTTCCCTGTGAAAGAATTGATGCTTGTAGAAATGATTGCATGTTATATTAGAAGGAGGATAAATTACTTGATTCTTGTAAAGTTTGTGGAGAATCCAGATAAAAAGTCGATAAACGTAATGGGGAAGCAAAGAACAAAAAGGGTAAAAATATAACATCAAAGATTTTGTGTTATTTTCCATTAAAGCCTAGGCTTCAAAGGTTATTTATGTCCTCAAAGACATCTTGTCTAATGAAATGACATCATGATGAAATAGTTGATGATGGATTAATGAGGCACCTAGCTGATTCAACGACATGGGAATTATTTGATAAACTTCATCCTTCATTTGCAGTCGAGCCTCGTAATGTTTGACTTGGACTTGCAAGTGATGGTTTTCAACCATTTTGGAATGCAAAAAAGTCATATAGAATTTGGCCAGTGGTACTTATTCCTTATAATTTACCACCTTGGTTATGTATGAAGCAATAAAACTTTATTATGTCCATGATTATTCCTGGTCCAGATGGTCCAGGTGATGTAATTGACACATATCTTCAACCCTTAATAGAAGAATTGAATGATTTATACATGAAAATTATGCATTTTCTAGGTGAGGGGTCTTATTTACCAAGCTTGCGGTATACACTTTCCCTTGCATTTCAAGGCCATTGTTATGTGTCATCTGTATTTCAAGGCCATTGTTATGTGCCATGCAAGAAACTAACTCCTTTATTGAAATATGACAATACGATCTAAATACTACCTTATTGTACACATTGTTATGATTTATCAAGATGCAATATACACATAAGCTAATAGTTTTAGATATATATAAGGACATATTATCACAATACATTTTTTCTAAATGCTTTCCTTATTTTGACATCATGTTTCCAATTTAGATATGCTGATTTATGTGCCTATTATCTCCTATTCAATTGGTTATCATGACTTACTCTTGCAAACTACAAAAGTCACTTCTTGCTTTTTTCCCATTATTTACTTTTATAACCATGGGGATTTATTCTTTAGTTATCAAATAGCTCACCTGCAAAAATAGAATTTAATTGATTCAAACAGTCCCATTGTTTCTGATTATTATTTTTCTTTCGATAGAGGTTGTCTAGTTCTAGGACATCACTTGCAGACAATGCAACACCAATTTCTTATCCAATATCACCAATGTTAACATCAAGTTCTTCCAGTACTGAAGTAGAGAAAGCAATTTCAAATCCTTCAAAAGTCCAAGCAGTTTTGAAGGGTATAAAATAGGTATGAGATGGCACAACCCTCTGGTTTTGTGAGAATTATATCTTCTCTTGTTCCTTTCTAGGTGGAGTTTCTAATTCTTTCTTCATATCTTCTCTTGTTCCTTTCTAGGTGGAGTTTCTGATTCTTTCTTCTTCGTCTTCTTGATTTTAAGGAAAGTCGCCCTGAACTCCTAAATGTCATCTACCAAATTCACTTCTTACAGCGCAATCATCCATATATCTTTTCTACCAGATTATGTCTGCTAGAGAAGGGACTTGGCCTTATTTATAGGAAAGAGTTATTCACCATTAAGATTGGGTGAGTTGATTTTCTTTTTTGATAACTTGTTGCTGGGGACAAATTACATGCACCTCAACTAAGTCACCCTTTACCTGTGACCTCCCACTAACATAATTATCAGGTAATTTTGCTCACCAAGGCTTAGAGTTTAGACAGATCTGAAGAATTCACCCGTGTGCAGTTTGTACTTTACATCGATTTGCTTGGTCCTCAAGGTTATCACTCTCATACTTTGACCACTAGACCATCCCTCAAGGGCTGAAATATTTATTTTTTCTGAACTCTCTTTGTCATCTTCTCTCAACCTTTTAATAATTTTTATTCCCAATCTATTGTAATCATTTGTACTAGTAAATCTCTCTCCTATAAAAAATGACTAATTTCAAATTATGTATCAATCCATAACACTTCCATCTCTAAATAGTTGTGGTTGCCTTTATGAATCTTCTATGCTCAATAGTTAAACTATAGATGAACTACTTCTTTGACGACTGTTAATTCACTTCAACCCTCCTTTATTTGAGCTTGGAGCCAACTTTACTTTGGGATGATTTATTGTTCTATCATTTGAAGTAGTTTATTGATGTTTTCTACATTTGTAACTTGCCTTTATTTATACCTTGTATATTTGCATTTTTACCAGTCATGAAATCTCCCCTTTAATTGGTTCATAATATTGTTTGATTTTCATAAATTTTTCAAATTTAGAAGTGTGTGGTAGTTATAAAATTTTGTTGTTTGTTGAATTTTGATCGTTAACAATCTTTATTGATATTACTCCATCAGCAACAAATGCTAATAATCCATGACCTGCCATTCTTTTATACTTTAACGTGTTGTTTTTTCATAGCCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAGGTAAGGCCACTGCAGCTATGATATTAAAAGTAATTGTTTGTATGTCAAATATATTGCCTATGGCTCTTTCAAAATAGGAGGTCAAAAGTGTTTCTGTGAGAGTTTTTTCTATCCACAAGACATCACACCAAGTTGTGTCTAACATGAGAATTGAAGTATAAAGAATCTCGTGACTCAAATTTCAAGTGTGTGATATAATGGGAACATTTGTCATGCAGGTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAGATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAACTGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCACAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</genome_strand>
        <mrna_strand>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAG..........................................................................................................................................................................................................................GTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAAATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAAATGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCGCAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327534" ref_strand="+" ref_description="SGN-U327534        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | nicotinate phosphoribosyltransferase family protein / NAPRTase family protein, contains Pfam domain PF04095: Nicotinate phosphoribosyltransferase (NAPRTase) | chr2:9978845-9982272 FORWARD | Aliases: F26B6.7, F26B6_7(evalue: 2e-39, score=158) genbank/nr: gi|37787327|gb|AAP69614.1| nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] (evalue: 7e-40, score=166)">
      <seq>aaaaataaaattaaaaaaataaaaaaattaaaaaaaaaataaatacttttatcaaacagctaggcctcccatcttccgcttccactgttttctgcatgctgtaatataccaaggccagcagggaagaaactggcaggcaccggcaccggcaccggcaccggcagggaagtgtttgtgaatcagaaactcagtcgttagattcagagtaataataataataattcttcacttagtattaaacgggaaaggaattgttgttatcgtgttcaattccatcaatagaattacaataatcatggcgtctgcagtggtagctaacgggaagaagaaattagaacaaagagggcctaaaattggggttattagtggtccgactaatccaatggtgacgcctcttttaacagatctttatcaatttactatggcttatgcttattggaaagctggaaaacacaatgaacgagctgtgtttgacttgtacttccgtaagaatccatttggtggtgaatatacaatatttgctgggttagaagaatgcataaagcttattgctcattacaaattaactgaagaagagatagcttttatcagaaaatcattgcccccatcgtgtgaggatgccttctataactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="104313" stop="101456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104013" g_stop="103546" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103545" i_stop="102775" i_length="771">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102774" g_stop="102627" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="616" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102626" i_stop="101775" i_length="852">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101774" g_stop="101756" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="635" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-U327534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104013" e_stop="103546"/>
          <exon e_start="102774" e_stop="102627"/>
          <exon e_start="101774" e_stop="101756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGTGTGAGTACCTGCATATTATTGATTTTCTATCAATTTGTCATGCATTTGATGTGTTTGATATAATGTGCAAATACTAAAATTATTCATTTTGGGAGTTGATAGAGTCTAGAATTGCGATTGATCATTTTCTTCATTGTTGATAGATTATGAATTAATATGATCAATTGGTAAGTATCAACTTGTGGAGATCTCTAACTGTTTAATCATCTGATCAAATGCCTTATTGAAAAAAGCAAAATGGTTAAGCGAAGGGACACATTTAGTTATTAAGTTTATATATGTATGCCTTCTGACGGTTATACATGTGTTGGCTGAAAACTATACTTAAACATGGTTAAAAAATATTTTTTTTTATGTATATATAGTAGAGGTTGAACTCCTTTTGGCTTCATCGCTTTTAGTCATTCATATTTTGAACCTGAACCTGTTTAATGAAAAATATTGGCTCCACCATTGCTTGTCGACATGTGAGTATAATTTATGGACCTAATATGTGGAAGTGTTTGGAGAAATGGCAGGTGTTAAGATTTGAGCTCAAGATATCCGATTGCTCTACCATGTTTAGTTGATGAACCAACTCATCGTTATAGTTTTTAGTGGGACATACTTATTTTTATGTTGATCAGTTCAATTTCGAGAGGGACATCATTAATTTGTTTATTTTTAGTTTACAACAGTAATATTCTTTTTCAGTTGTTGAGAAAATGTTTGTTCATCTAAAATCCAAGTGACCCACTAAATGACTTGTCTTTATTTGGTTGAATATTTCAGGTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAGGTAGATTAATTATTGTCAAAGTAAATAAACAGCTGTAATGTGTGTAAAAGCTATATTTGACGAGAGATAGAAATCTGCTTTTATCTTTTTGTCCTTTTAGGGTTATTCATTGTTTTCTTATTGTTATTATATTATATGTCATTATAGGAAACTTGTGCATGAATTCTGGAGGATTGATGTTTTCTTGTTTCGTGATACCTTAGTGAAATATGATCATGAGCAAAATCTGGGTAATTAATGAGATTATGTAAGCATGAGTGGTTATGAGTGAACTGGTGGCTTATTTCTAGTCGTTACTTTTATTCCAGATGTTGCTTTGTCAACATATCAAAGTGTATCTAGATAATTTTGGCAAAAGCTGTCGTCATATAATTTATTTATCTTGAATTTGGCATATGTTCTTTTGCTGCTATGGATTTTTGGTTAACATAAAGGAAAGTATCTAACCGCGCATCTTCTTTGAGAATTTTTTTTCCTGCTCTCTTGAACATACCATCTCATTCTGTTGAGAAAATCAGGCAGTGTTTCAATATCTCGTCTTCTAGTTGTTTGTGCCTTGATATTACCTTTTCATGTACGCTTGAAGAATTGTTTGACATACTTAGGGCTCTTTCAGTTGGGGAAAGGGTTATCCCGGGATTGTTATATCACCCTCAATGTGGGATAAAATAACACGACAATCCCGTGATAACTAATCTCAGGATAAGTCATCCCCTGATTTAATACCAACCAAACATGAGATAAACTCATCCTATAATTAATCCCGGGATTAATTATCCCTTATCCCTATTGACAAATGAGCCCTTACAGTTTGAAGTGCTAGAGTTAAGCATCTTCAAATGGACTTTGTAGGATGCCTTCTATAACTACC</genome_strand>
        <mrna_strand>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTTCTATAACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8069" PGL_stop="7330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8069" e_stop="7330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="8069" e_stop="7330" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8069" stop="7330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCGACCGCTTCTAATGGACACAGGTTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCGATAACCAATAAAGTGGTGGACGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGCACAAATCGCAACAGTCATTTGACGAAGGAGATATGTGAGCAATTTAAGATTGTTCATCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTTTGAGAAAAATGATCGACAAACAGCGAGGTTGGCATGAAATGTTGCCATATGCTTTGCTAGGTTATCAAACAACGGTCAGAACATCGACTGGGTCTACTCCATACTTGCTAGTATATGGAACAGAAGAAGTCATTCCTGTTGAAGTCGAGATACCGTCGTTGAGGATCATCCAAGAAACTGAATTAAGTAATGCCGAATGGATTAGTAAACGGATTCATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCACCGTTTGCCATGGTCATTTTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  D  R  F  *  W  T  Q  V  H  F  G  C  H  *  L  F  H  Q  V  G  G  S  S  L  L  Q  V  D  N  Q  *  S  G  G  R  F  C  P  Q  Q  S  D  M  Q  I  W  S  S  R  I  H  H  Y  *  *  R  H  K  S  Q  Q  S  F  D  E  G  D  M  *  A  I  *  D  C  S  S  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  Y  Q  K  D  F  E  K  N  D  R  Q  T  A  R  L  A  *  N  V  A  I  C  F  A  R  L  S  N  N  G  Q  N  I  D  W  V  Y  S  I  L  A  S  I  W  N  R  R  S  H  S  C  *  S  R  D  T  V  V  E  D  H  P  R  N  *  I  K  *  C  R  M  D  *  *  T  D  S  S  T  S  F  D  *  *  E  E  N  G  H  R  L  P  W  S  F  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V   </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  T  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  I  T  N  K  V  V  D  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  T  N  R  N  S  H  L  T  K  E  I  C  E  Q  F  K  I  V  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  Q  T  T  V  R  T  S  T  G  S  T  P  Y  L  L  V  Y  G  T  E  E  V  I  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  T  E  L  S  N  A  E  W  I  S  K  R  I  H  Q  L  A  L  I  D  E  K  R  M  V  T  V  C  H  G  H  F  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  R  P  L  L  M  D  T  G  S  F  W  L  P  L  I  I  S  P  S  G  W  K  Q  P  L  T  S  R  *  P  I  K  W  W  T  I  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  L  L  I  T  A  Q  I  A  T  V  I  *  R  R  R  Y  V  S  N  L  R  L  F  I  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  I  S  K  R  F  *  E  K  *  S  T  N  S  E  V  G  M  K  C  C  H  M  L  C  *  V  I  K  Q  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  M  E  Q  K  K  S  F  L  L  K  S  R  Y  R  R  *  G  S  S  K  K  L  N  *  V  M  P  N  G  L  V  N  G  F  I  N  *  L  *  L  M  R  R  E  W  S  P  F  A  M  V  I  L  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8068" stop="7388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPTASNGHRFILVAIDYFTKWVEAASYKSITNKVVDDFVRNNLICRFGVPESIITDNGTNRNSHLTKEICEQFKIVHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYQTTVRTSTGSTPYLLVYGTEEVIPVEVEIPSLRIIQETELSNAEWISKRIHQLALIDEKRMVTVCHGHFIDKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22537" PGL_stop="22784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22537" e_stop="22784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22537" e_stop="22784" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22537" stop="22784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</gDNA_template>
            <first_frame> E  K  P  L  *  E  Q  S  K  I  F  C  R  L  Y  K  K  K  *  F  V  K  K  N  T  V  *  V  I  F  *  *  D  E  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  R  C  K  I  P  Y  Y  S  N  I  S  C  S  S  W  P  A  V  F  S  L  L  R  R  V  S   </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  V  D  Y  T  R  K  S  S  L  *  R  K  I  Q  C  E  *  Y  F  S  K  M  K  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  L  *  L  H  D  V  K  F  L  T  I  V  I  S  V  A  L  L  G  P  Q  F  F  P  Y  *  E  G  F  P  </second_frame>
            <third_frame>   K  T  T  L  R  A  K  *  D  I  L  *  T  I  Q  E  K  V  V  C  E  E  K  Y  S  V  S  D  I  L  V  R  *  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  C  D  Y  T  M  *  N  S  L  L  *  *  Y  Q  L  L  F  L  A  R  S  F  F  L  I  E  K  G  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0037P10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="37555" PGL_stop="37840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37555" e_stop="37840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="37555" e_stop="37840" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37555" stop="37840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCATTGGTCTGATCACACAAGAAGGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTATTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCAAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  *  S  H  K  K  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  I  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  E  Q  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  H  W  S  D  H  T  R  R  S  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  F  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  K  P  L  G  L  * </second_frame>
            <third_frame>   R  F  I  G  L  I  T  Q  E  G  V  *  *  S  L  K  E  R  *  G  D  T  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37604" stop="37840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGHLYFSLRGYKTLGKFHSFFLSFVLLFGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKKRLSKPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40557" PGL_stop="37847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40557" e_stop="37847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="40557" e_stop="37847" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40557" stop="39845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40037" stop="39379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39358" stop="38800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39354" stop="37918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38279" stop="37847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGACCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCCCAGATTCAGCACCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTTTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTAATCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  V  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  I  L  L  I  F  L  L  T  I  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  L  V  H  Q  T  H  E  C  I  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  L  K  T  S  I  L  L  I  *  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  I  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  W  A  S  T  R  F  K  I  N  T  E  V  N  V  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  G  V  I  L  D  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  T  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  L  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  K  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  *  F  T  M  *  I  K  T  I  S  K  G  G  R  Y  I  R  K  *  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  T  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  S  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  M  L  T  G  L  M  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  F  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  V  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  D  P  S  H  R  W  C  L  R  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  P  R  F  S  T  F  E  E  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  H  F  L  S  R  W  R  S  H  R  P  S  I  R  R  A  R  C  S  S  S  S  F  R  G  R  P  P  T  T  S  T  T  A  S  C  R  *  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  I  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  F  S  S  Y  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  S  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  *  K  L  P  S  F  L  F  K  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  K  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  S  R  S  I  Q  K  S  M  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  I  C  A  K  K  A  K  H  P  L  L  T  I  F  L  P  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Y  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  F  K  I  T  K  S  T  R  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  K  E  E  D  T  *  E  N  K  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  F  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  L  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  Y  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  C  G  P  P  T  T  V  C  S  K  D  *  M  G  R  T  E  *  P  L  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  H  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  T  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  P  D  S  A  P  L  K  N  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  E  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  N  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  *  S  S  L  F  L  T  R  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  S  P  H  I  P  P  Y  Y  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  H  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  I  V  G  S  L  C  T  S  K  N  F  H  P  S  Y  L  K  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  N  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  L  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  C  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  W  C  H  P  *  Y  V  P  R  K  L  N  T  L  Y  *  P  F  S  Y  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  Q  E  Y  C  S  P  *  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  V  I  H  N  V  N  *  D  H  *  Q  R  R  K  I  H  K  K  I  R  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  H  Y  R  L  S  F  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  C  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  F  L  *  L  L  G  V  Y  N  S  I  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  N  V  D  R  S  D  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  W  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  T  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  R  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  N  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  L  *  R  M  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  N  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  P  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  T  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40392" stop="40054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQILLIFLLTIRVYQYIINKYDHKEIQIWLKNLVHQTHECIRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39584" stop="39288"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSYTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSTIFKITKSTRVLLPIKVTRQDLYTFSTITDSPTGVETRIGMSSNSQCKLRPLAKEEDT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38124" stop="37852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRGLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPFLTLSYHFLSRWRSHRPSIRRARCSSSSFRGRPPTTSTTASCR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39126" stop="38872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRITASTMTTSSSSYWGSITLFGTIPPNMSSLPTSITLSRVKHRSLREMLTGLMWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39830" stop="39585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGSRSIQKSMSLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLICAKKAKHPLLTIFLPRRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38816" stop="38604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIHSCGLKQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37914" PGL_stop="38467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37914" e_stop="38467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="37914" e_stop="38467" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37914" stop="38467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATTCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCATTCTTCAAAGGTGCTGAATCTGGGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGTCTCATTCT</gDNA_template>
            <first_frame> T  *  P  V  *  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  P  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  F  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  I  L  Q  R  C  *  I  W  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  G  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  S  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  F  F  K  G  A  E  S  G  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  V  S  F  </second_frame>
            <third_frame>   L  A  R  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  P  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  I  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  H  S  S  K  V  L  N  L  G  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  R  R  H  H  L  *  L  G  S  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37915" stop="38382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDSSLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPFFKGAESGDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38541" PGL_stop="39946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38541" e_stop="38715"/>
            <exon e_start="39460" e_stop="39946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="38541" e_stop="38715" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38716" i_stop="39459" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="39460" e_stop="39946" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38541" stop="38715"/>
              <exon start="39460" stop="39946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAA : ATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGGTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATATCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGATTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTTTAA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  V  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R   : N  G  *  F  *  C  N  S  R  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  W  *  E  N  G  *  *  R  V  F  S  F  L  G  T  Y  Q  G  *  H  H  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  H  *  L  L  Y  *  S  *  T  G  Y  S  P  N  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  F  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  F   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  W  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  :  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  *  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  G  K  K  M  V  S  K  G  C  L  A  F  L  A  H  I  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  D  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  L  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  N  M  P  L  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  K :   W  L  I  L  M  *  F  *  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  R  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  V  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  P  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  T  L  T  S  V  L  I  L  N  R  V  L  A  Q  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  I  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39577" stop="39945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGDYTSNPVRIISFLRGKKMVSKGCLAFLAHIKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRDLKAQLQELLSKGFIRPSASPWGAPVLFL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38542" stop="38715"/>
                    <exon start="39460" stop="39576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSKYATQLCFSPQEWIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="68813" PGL_stop="63438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68813" e_stop="68593"/>
            <exon e_start="64343" e_stop="64235"/>
            <exon e_start="64016" e_stop="63438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68813" e_stop="68593" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.899">
            <gDNA_intron_boundary i_start="68592" i_stop="64344" i_length="4249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64343" e_stop="64235" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64234" i_stop="64017" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="64016" e_stop="63438" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68813" stop="68593"/>
              <exon start="64343" stop="64235"/>
              <exon start="64016" stop="63438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAG : CCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAG : GTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAGATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAACTGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCACAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</gDNA_template>
            <first_frame> F  L  S  W  C  L  L  A  S  T  T  A  L  K  H  L  R  V  R  E  Y  R  P  T  C  *  *  N  F  E  G  E  F  Q  F  L  K  Y  P  L  C  F  L  S  F  S  M  Q  *  S  L  N  S  L  N  L  E  S  *  R  H  Y  C  Q  K  N  L  L  I  F  E  A  *  S :   P  K  K  V  N  L  F  A  K  L  V  R  G  M  C  V  E  D  A  L  L  Q  L  Q  V  T  V  K  R  A  S  K  T  I  Y  Q  :  V  I  H  L  A  W  A  N  A  V  H  S  D  G  F  D  S  D  R  L  L  V  R  K  M  T  N  K  K  F  A  Y  F  H  L  I  S  T  L  L  E  Y  F  F  L  I  M  F  C  A  A  E  A  F  L  R  K  G  L  F  K  K  R  L  S  N  H  A  K  G  K  Y  G  L  M  V  R  P  E  C  R  M  I  V  V  L  R  E  I  T  S  V  E  E  A  E  I  A  K  L  R  V  S  N  F  K  K  L  T  K  R  K  N  C  L  V  P  H  K  L  I  K  T  T  P  I  W  N  P  R  *  K  L  E  V  V  A  Q  V  L  L  V  N  E  P  R  Y  Y  H  S  L  I  F  R  *  K  R  M  Q  S  H  K  I  S  G  *  *  K  S  T  A  S  C  H  I  S  F  L  *  E  M  *  L  D  L  I  P  D  F  C  F  L  F </first_frame>
            <second_frame>  F  S  L  G  V  S  W  L  Q  Q  Q  P  *  N  T  L  G  F  V  S  I  V  P  L  V  N  K  I  L  K  E  S  F  S  S  *  S  I  L  C  V  F  S  L  S  L  C  N  S  L  *  I  P  *  I  L  K  V  E  G  I  I  V  R  K  I  S  *  F  L  K  L  E   : A  Q  R  R  *  I  C  L  L  N  *  F  A  V  C  A  L  K  M  H  C  Y  S  C  K  *  Q  *  S  E  L  P  K  L  S  I  R :   L  Y  T  *  L  G  Q  M  Q  C  I  A  M  D  L  I  Q  I  V  F  L  F  V  K  *  Q  I  K  N  L  H  I  F  I  S  F  L  P  F  W  S  T  S  S  L  S  C  F  V  Q  L  R  H  F  L  E  K  D  F  L  R  K  G  C  P  T  M  L  K  E  S  M  D  *  W  *  G  Q  N  V  E  *  L  W  Y  L  G  R  *  H  R  W  R  R  R  R  *  L  S  *  E  *  A  T  S  K  S  *  P  N  A  K  T  V  L  S  L  I  S  S  L  R  L  L  Q  Y  G  T  Q  G  E  S  *  K  *  W  H  K  Y  C  W  *  M  S  P  D  I  I  I  V  *  F  F  V  R  N  V  C  N  H  I  R  S  V  V  D  E  N  P  L  H  L  A  T  F  L  F  C  K  R  C  N  L  T  *  Y  L  T  S  V  F  F   </second_frame>
            <third_frame>   S  L  L  V  S  L  G  F  N  N  S  P  K  T  P  *  G  S  *  V  S  S  H  L  L  I  K  F  *  R  R  V  S  V  L  E  V  S  S  V  F  S  L  F  L  Y  A  I  V  F  E  F  P  K  S  *  K  L  K  A  L  L  S  E  K  S  P  N  F  *  S  L  K  :  P  K  E  G  E  F  V  C  *  I  S  S  R  Y  V  R  *  R  C  I  V  T  V  A  S  D  S  K  A  S  F  Q  N  Y  L  S   : G  Y  T  L  S  L  G  K  C  S  A  *  R  W  I  *  F  R  S  S  S  C  S  *  N  D  K  *  K  I  C  I  F  S  S  H  F  Y  P  F  G  V  L  L  P  Y  H  V  L  C  S  *  G  I  S  *  K  R  T  F  *  E  K  V  V  Q  P  C  *  R  K  V  W  T  D  G  E  A  R  M  *  N  D  C  G  T  *  G  D  N  I  G  G  G  G  G  D  S  *  V  E  S  K  Q  L  Q  K  A  N  Q  T  Q  K  L  S  C  P  S  *  A  H  *  D  Y  S  N  M  E  P  K  V  K  V  R  S  S  G  T  S  I  V  G  E  *  A  P  I  L  S  *  F  N  F  S  L  E  T  Y  A  I  T  *  D  Q  W  L  M  K  I  H  C  I  L  P  H  F  F  F  V  R  D  V  T  *  L  N  T  *  L  L  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68594" stop="68593"/>
                    <exon start="64343" stop="64235"/>
                    <exon start="64016" stop="63624"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKKVNLFAKLVRGMCVEDALLQLQVTVKRASKTIYQVIHLAWANAVHSDGFDSDRLLVRKMTNKKFAYFHLISTLLEYFFLIMFCAAEAFLRKGLFKKRLSNHAKGKYGLMVRPECRMIVVLREITSVEEAEIAKLRVSNFKKLTKRKNCLVPHKLIKTTPIWNPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="104013" PGL_stop="101756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104013" e_stop="103546"/>
            <exon e_start="102774" e_stop="102627"/>
            <exon e_start="101774" e_stop="101756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.721" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104013" e_stop="103546" e_length="468"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="103545" i_stop="102775" i_length="771"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102774" e_stop="102627" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.721">
            <gDNA_intron_boundary i_start="102626" i_stop="101775" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101774" e_stop="101756" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104013" stop="103546"/>
              <exon start="102774" stop="102627"/>
              <exon start="101774" stop="101756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT : GTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAG : GATGCCTTCTATAACTACC</gDNA_template>
            <first_frame> K  N  K  I  K  K  I  K  K  L  K  K  K  *  I  L  L  S  N  S  *  A  S  H  L  P  L  P  L  F  S  A  C  C  N  I  P  R  P  A  G  K  K  L  A  G  T  G  T  G  T  G  T  G  R  E  V  F  V  N  Q  K  L  S  R  *  I  Q  S  N  N  N  N  N  S  S  L  S  I  K  R  E  R  N  C  C  Y  R  V  Q  F  H  Q  *  N  Y  N  N  H  G  V  C  S  G  S  *  R  E  E  E  I  R  T  K  R  A  *  N  W  G  Y  *  W  S  D  *  S  N  G  D  A  S  F  N  R  S  L  S  I  Y  Y  G  L  C  L  L  E  S  W  K  T  Q  *  T  S  C  :  V  *  L  V  L  P  *  E  S  I  W  W  *  I  Y  N  I  C  W  V  R  R  M  H  K  A  Y  C  S  L  Q  I  N  *  R  R  D  S  F  Y  Q  K  I  I  A  P  I  V  *   : G  C  L  L  *  L   </first_frame>
            <second_frame>  K  I  K  L  K  K  *  K  N  *  K  K  N  K  Y  F  Y  Q  T  A  R  P  P  I  F  R  F  H  C  F  L  H  A  V  I  Y  Q  G  Q  Q  G  R  N  W  Q  A  P  A  P  A  P  A  P  A  G  K  C  L  *  I  R  N  S  V  V  R  F  R  V  I  I  I  I  I  L  H  L  V  L  N  G  K  G  I  V  V  I  V  F  N  S  I  N  R  I  T  I  I  M  A  S  A  V  V  A  N  G  K  K  K  L  E  Q  R  G  P  K  I  G  V  I  S  G  P  T  N  P  M  V  T  P  L  L  T  D  L  Y  Q  F  T  M  A  Y  A  Y  W  K  A  G  K  H  N  E  R  A  V :   F  D  L  Y  F  R  K  N  P  F  G  G  E  Y  T  I  F  A  G  L  E  E  C  I  K  L  I  A  H  Y  K  L  T  E  E  E  I  A  F  I  R  K  S  L  P  P  S  C  E  :  D  A  F  Y  N  Y  </second_frame>
            <third_frame>   K  *  N  *  K  N  K  K  I  K  K  K  I  N  T  F  I  K  Q  L  G  L  P  S  S  A  S  T  V  F  C  M  L  *  Y  T  K  A  S  R  E  E  T  G  R  H  R  H  R  H  R  H  R  Q  G  S  V  C  E  S  E  T  Q  S  L  D  S  E  *  *  *  *  *  F  F  T  *  Y  *  T  G  K  E  L  L  L  S  C  S  I  P  S  I  E  L  Q  *  S  W  R  L  Q  W  *  L  T  G  R  R  N  *  N  K  E  G  L  K  L  G  L  L  V  V  R  L  I  Q  W  *  R  L  F  *  Q  I  F  I  N  L  L  W  L  M  L  I  G  K  L  E  N  T  M  N  E  L   : C  L  T  C  T  S  V  R  I  H  L  V  V  N  I  Q  Y  L  L  G  *  K  N  A  *  S  L  L  L  I  T  N  *  L  K  K  R  *  L  L  S  E  N  H  C  P  H  R  V  R :   M  P  S  I  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103835" stop="103546"/>
                    <exon start="102774" stop="102627"/>
                    <exon start="101774" stop="101757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRNSVVRFRVIIIIILHLVLNGKGIVVIVFNSINRITIIMASAVVANGKKKLEQRGPKIGVISGPTNPMVTPLLTDLYQFTMAYAYWKAGKHNERAVFDLYFRKNPFGGEYTIFAGLEECIKLIAHYKLTEEEIAFIRKSLPPSCEDAFYNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 76 chains have been computed
$ 
$ memory statistics:
$ 30816 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2201 bytes was the average size of a spliced alignment
$ 13920 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1740 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 93 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:38:00
-->
