<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:21:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212403" ref_strand="+" ref_description="SGN-E212403 [cLEC-74-H1]">
      <seq>ggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgaggtctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1456" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1156" g_stop="698" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="697" i_stop="513" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="512" g_stop="499" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="473" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E212403" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1156" e_stop="698"/>
          <exon e_start="512" e_stop="499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTAGTTACTATATCAAATCTCGAAATATTTCATTAATTGATTCTAGGAAATATCATCACCTCCTAATGCAAAGGAGAAGGAAATGAGTAATATTTAGACAAAAAAATGAAGGAAACAAACACAATGTGTTGATATATTAGGGGCATTGGATGCCTCCATTAATAATTTAACAGAAAAATGTCAAAGA</genome_strand>
        <mrna_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGGTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA.........................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266236" ref_strand="+" ref_description="SGN-E266236 [cLEI-3-M2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaagtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaagaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1601" stop="394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="683" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E266236" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAAGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAAGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551559" ref_strand="+" ref_description="SGN-E551559 [cTSB-1-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1604" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1304" g_stop="685" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E551559" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1304" e_stop="685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693557" ref_strand="+" ref_description="SGN-E693557 [LH_Ea01K03](-)">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttctccggctaccaagtgaattttcgatggtttgatagtgggtaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacaaggtttgagttctcttgtgtcctatgtgatgcaatacttaaatggatgacatatgtattagtatgttatttagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1573" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1273" g_stop="685" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E693557" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1273" e_stop="685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATA-ATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCTCCGGCTACCAAGTGAATTTTCGATGGTTTGATAGTGGGTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACAAGGTTTGAGTTCTCTTGTGTCCTATGTGATGCAATACTTAAATGGATGACATATGTATTAGTATGTTATT-TAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553752" ref_strand="+" ref_description="SGN-E553752 [cTSC-2-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaagcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1604" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1304" g_stop="686" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E553752" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1304" e_stop="686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCT</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAAGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352697" ref_strand="+" ref_description="SGN-E352697 [cTOS-11-O16]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1601" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="687" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E352697" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATC</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689717" ref_strand="+" ref_description="SGN-E689717 [LH_Ea01K03]">
      <seq>cattaaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggtttgatagtggctaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1573" stop="397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1277" g_stop="690" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E689717" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1277" e_stop="690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCT</genome_strand>
        <mrna_strand>CATTAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTTGATAGTGGCTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352159" ref_strand="+" ref_description="SGN-E352159 [cTOS-13-A22]">
      <seq>tcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagatannnnnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1496" stop="399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1196" g_stop="698" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="528"/>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E352159" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1196" e_stop="698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA</genome_strand>
        <mrna_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553871" ref_strand="+" ref_description="SGN-E553871 [cTSC-2-H7]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttatttttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1605" stop="400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1305" g_stop="700" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E553871" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1305" e_stop="700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTT-AACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354030" ref_strand="+" ref_description="SGN-E354030 [cTOS-16-O19]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1601" stop="411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="710" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E354030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357600" ref_strand="+" ref_description="SGN-E357600 [cTOS-24-A5]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtaatgctaatggtggttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctaatttgagttctcctgtggactatgtgatgccataatccatgaatgacatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1605" stop="417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1305" g_stop="717" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E357600" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1305" e_stop="717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAATGCTAATGGTGGTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTAATTTGAGTTCTCCTGTGGACTATGTGATGCCATAATCCATGAATGACATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266444" ref_strand="+" ref_description="SGN-E266444 [cLEI-3-F2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattatcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagttcttctcaagttgttgaagcagaaaaacaagttgcttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactataatttgtagcctttttattttttttaacctatattgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1601" stop="417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1301" g_stop="717" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E266444" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1301" e_stop="717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTATCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTCTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGCTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTATAATTTGTAGCCTTTTTATTTTTTTTAACCTATATTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309170" ref_strand="+" ref_description="SGN-E309170 [cLEZ-12-E21]">
      <seq>aaaaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagtaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1607" stop="421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1307" g_stop="721" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E309170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1307" e_stop="721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</genome_strand>
        <mrna_strand>AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAG-TAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348694" ref_strand="+" ref_description="SGN-E348694 [cTOF-30-F12]">
      <seq>tcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaatnntcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatggtgnttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctatttttgagtctcttgtgtactatgtgatgcantaatcaatgaatgacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1553" stop="422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1253" g_stop="722" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E348694" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1253" e_stop="722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATAT</genome_strand>
        <mrna_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATNNTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGGTGNTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTTGAGTCTCTTGTGTACTATGTGATGCANTAATCAATGAATGACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287327" ref_strand="+" ref_description="SGN-E287327 [cLES-15-H15]">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1573" stop="451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1273" g_stop="742" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E287327" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1273" e_stop="742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCA</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357825" ref_strand="+" ref_description="SGN-E357825 [cTOS-24-E8]">
      <seq>cccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1598" stop="459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1298" g_stop="759" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E357825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1298" e_stop="759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</genome_strand>
        <mrna_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243257" ref_strand="+" ref_description="SGN-E243257 [cLEE-2-J18]">
      <seq>caatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattacgcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaatcgttcgatgctgttgttgttggtaaagcttgtgagaagaagaaggaattgcttacgtattctccttctccttcaccggctacaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1596" stop="584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1296" g_stop="884" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E243257" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1296" e_stop="884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTG</genome_strand>
        <mrna_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTACGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATCGTTCGATGCTGTTGTTGTTGGTAAAGCTTGTGAGAAGAAGAAGGAATTGCTTACGTATTCTCCTTCTCCTTCACCGGCTACAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723470" ref_strand="+" ref_description="SGN-E723470 [FC20CD05]">
      <seq>gccgaattgaccgccattacgtgtccattaaaaaactcctatatatagtcccccttcttcctttcttcttcatcaaaaaaaaaaagaaaaaaaatccccaatccccaagggaaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagccaattttcttcatcaaacgcattaggcggaaagctcggcgaaaaaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaaaatctaggtaagaactgtgtcaaaaaacacaacaaaaatttgcggcatatcaagggggctttaagttctttattgagtttttctcaagttgttgaaccaaaaaaacaagttgtttcgggggtaaaatattatcaaaaaatcccagctatggttaaatcatcaagctcaccaaaattgttcaatgctgttgttgttgtaaaagcttggaaaaaaaaaaaggaattgcttactttttctccttctccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="1685" stop="598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1394" g_stop="898" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E723470" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1394" e_stop="898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCA</genome_strand>
        <mrna_strand>GCCGAATTGACCGCCATTACGTGTCCATTAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCCCCAAGGGAAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGCCAATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGAAAAAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAAATCTAGGTAAGAACTGTGTCAAAAAACACAACAAAAATTTGCGGCATATCAAGGGGGCTTTAAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAACCAAAAAAACAAGTTGTTTCGGGGGTAAAATATTATCAAAAAATCCCAGCTATGGTTAAATCATCAAGCTCACCAAAATTGTTCAATGCTGTTGTTGTTGTAAAAGCTTGGAAAAAAAAAAAGGAATTGCTTACTTTTTCTCCTTCTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309339" ref_strand="+" ref_description="SGN-E309339 [cLEY-22-A19]">
      <seq>atgtgtgggaaattaatagagattctactttttgggaggatcccttaatgtttaagcctgagaggttttggcattcaaatttatacgtgcgaggacaagattttgaactgatcccatttggtgcgggtagaagaatgtgccctgccttgccacttgcattgcgaatgattccagtcatgttgggctcactcttgaattccttcaattggaaactcgaggcaggcattagaccagaagacctagacatggaggaaaaatttggtttggctttaatcaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="19263" stop="20145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19563" g_stop="19845" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E309339" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19563" e_stop="19845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</genome_strand>
        <mrna_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAATGTTTAAGCCTGAGAGGTTTTGGCATTCAAATTTATACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAAAAATTTGGTTTGGCTTTAATCAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310265" ref_strand="+" ref_description="SGN-E310265 [cTOA-1-A4]">
      <seq>ctatggattactatacacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtatcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23555" stop="24552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23855" g_stop="24252" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E310265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23855" e_stop="24252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</genome_strand>
        <mrna_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTATCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305501" ref_strand="+" ref_description="SGN-E305501 [cLEX-15-J4]">
      <seq>gattactattcacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttctaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcgacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23560" stop="24712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23860" g_stop="24412" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E305501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23860" e_stop="24412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</genome_strand>
        <mrna_strand>GATTACTATTCACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCTAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCGACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300235" ref_strand="+" ref_description="SGN-E300235 [cLEW-17-B11]">
      <seq>ttagtgttggctaatatcataccaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23590" stop="24736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23890" g_stop="24436" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E300235" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23890" e_stop="24436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTT</genome_strand>
        <mrna_strand>TTAGTGTTGGCTAATATCATACCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390674" ref_strand="+" ref_description="SGN-E390674 [TUS-46-F12]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23615" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23915" g_stop="24488" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E390674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23915" e_stop="24488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390673" ref_strand="+" ref_description="SGN-E390673 [TUS-46-F10]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23615" stop="24744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23915" g_stop="24444" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E390673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23915" e_stop="24444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302472" ref_strand="+" ref_description="SGN-E302472 [cLEW-27-J2]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagccccaccaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgccttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaaccaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23615" stop="24737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23915" g_stop="24437" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E302472" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23915" e_stop="24437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAG-CGCA-CAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACG-CTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAA-CAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCCCCACCAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACCAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294328" ref_strand="+" ref_description="SGN-E294328 [cLET-14-J22](-)">
      <seq>gacctatatccaaagcttcaccttgttgactacatttgtcacaataatcaatcaattgtttcaccttttgagaccttagatgttgatttgcatcaagcttattggaagataagaggttagtgttcaatattcttcgaagcgttcgccattgaggacaaacaggaagccatgccacagaaaatttgtaatggttgtgcgcttgaagagcattaggagcaaatctagatgaaaaggcttgatcttgagttttaaggacttgttttgcaatggttgatgaggaaatgactattgttgttatttgacctaactttaaactcataattggaccataattttttgcaagattggctagtgatatatgaggttttgcacctaacaactgaaggtttccaataattggccatggtgatggacctggtggaagttttttgcttcctttgctacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="-" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="24664" stop="23616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24364" g_stop="23916" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="-" ref_id="SGN-E294328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24364" e_stop="23916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</genome_strand>
        <mrna_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294327" ref_strand="+" ref_description="SGN-E294327 [cLET-14-J22]">
      <seq>aatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23616" stop="24664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23916" g_stop="24364" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E294327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23916" e_stop="24364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</genome_strand>
        <mrna_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291872" ref_strand="+" ref_description="SGN-E291872 [cLET-7-N15]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23617" stop="24837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23917" g_stop="24537" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E291872" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23917" e_stop="24537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291937" ref_strand="+" ref_description="SGN-E291937 [cLET-7-M17]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttagggnnntnncccnaaaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctattgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgcctgtcctcaatggcaaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23617" stop="24783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23917" g_stop="24483" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E291937" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23917" e_stop="24483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTA-GG---T----C---AAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGGNNNTNNCCCNAAAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTATTGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGCCTGTCCTCAATGGCAAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301544" ref_strand="+" ref_description="SGN-E301544 [cLEW-23-O2]">
      <seq>ttattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23669" stop="24874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23969" g_stop="24574" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E301544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23969" e_stop="24574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</genome_strand>
        <mrna_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335463" ref_strand="+" ref_description="SGN-E335463 [cTOE-2-C13]">
      <seq>acaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaaaatcctcaagagattgatcataatcacatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23770" stop="25024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24070" g_stop="24724" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E335463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24070" e_stop="24724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGT</genome_strand>
        <mrna_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302969" ref_strand="+" ref_description="SGN-E302969 [cLEW-26-D4]">
      <seq>aacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23772" stop="24807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24072" g_stop="24507" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E302969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24072" e_stop="24507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</genome_strand>
        <mrna_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278924" ref_strand="+" ref_description="SGN-E278924 [cLER-2-C12]">
      <seq>taaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="23814" stop="24990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24114" g_stop="24690" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E278924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24114" e_stop="24690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</genome_strand>
        <mrna_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390928" ref_strand="+" ref_description="SGN-E390928 [TUS-46-F12](-)">
      <seq>taatcacatcaagtccatgttcatggacntatttggtgcgggtactgatacaaccacaagcacattggaatgggcaatggcagaattgcttaaacaacctgagataataaaaaaagctcaagttgaacttgctgaaatcattgggaaaggaaaattaatagaagaagctgatgtttttcgactcccttacttgcaatgcattatcaaagaaacattaagattgcatccaccggttccgctcttagttccgcgcaaagtagaccaagatgttgaattgtgtgactacatcatcccaaagggctcacaggtactagttaatgtgtgggcgattggtcgagattttactttttggaaggatcctttagagtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgaggatgattccagtaatgttgggctcactgttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="24411" stop="26060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24711" g_stop="24735" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24736" i_stop="24845" i_length="110">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24846" g_stop="25127" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="307" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25128" i_stop="25348" i_length="221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25349" g_stop="25769" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="728" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E390928" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24711" e_stop="24735"/>
          <exon e_start="24846" e_stop="25127"/>
          <exon e_start="25349" e_stop="25769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACATCAAGTCCATGTTCATGGTTCGTATTATTTATCATGAGCTTATGTTATATTATTATAATTTATGAATTTTTTTTATTATTATTGCAATATATGGTTATTTATTTTGATGTACAAATTAATGTTATAGGACCTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAGGTATGTATGTGTGGTAAATAAAGTTATTTGACGAAAATAATATGAATAGTGTACTAAAGAGGACCCAAAAGAAAATTTATAATTATTTTTTAAAAAAATAAAATAAATTAAAATTTGGTTAGAGTTGGATGGATTAGGTTTGACCTGTTGTTTAGTACTGAATCTTATTGAGCTCTTTTAACCAATCCAAACATAAACTAACTCATGTAATTTGAGTCCAGGTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</genome_strand>
        <mrna_strand>TAATCACATCAAGTCCATGTTCATG..............................................................................................................GACNTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG.............................................................................................................................................................................................................................GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390927" ref_strand="+" ref_description="SGN-E390927 [TUS-46-F10](-)">
      <seq>gataataaaaaaagctcaagttgaactgctgnaaatcatcgggaaaggaaaattaatagaagaagctgatgttnttcgactcccttacttgcaatgcattatcaaagaaacattaagattgcatccaccggttccgctcttagttccgcgcaaagtagaccaagatgttgaattgtgtgactacatcatcccaaagggctcacaggtactagttaatgtgtgggcgattggtcgagattttactttttggaaggatcctttagagtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgaggatgattccagtaatgttgggctcactgttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="24623" stop="26060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24923" g_stop="25127" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25128" i_stop="25348" i_length="221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25349" g_stop="25769" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E390927" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24923" e_stop="25127"/>
          <exon e_start="25349" e_stop="25769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAAAAAAAGCTCAAGTTGAACTTGCTG-AAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAGGTATGTATGTGTGGTAAATAAAGTTATTTGACGAAAATAATATGAATAGTGTACTAAAGAGGACCCAAAAGAAAATTTATAATTATTTTTTAAAAAAATAAAATAAATTAAAATTTGGTTAGAGTTGGATGGATTAGGTTTGACCTGTTGTTTAGTACTGAATCTTATTGAGCTCTTTTAACCAATCCAAACATAAACTAACTCATGTAATTTGAGTCCAGGTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</genome_strand>
        <mrna_strand>GATAATAAAAAAAGCTCAAGTTGAAC-TGCTGNAAATCATCGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTNTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG.............................................................................................................................................................................................................................GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695168" ref_strand="+" ref_description="SGN-E695168 [LH_Ea05N06](-)">
      <seq>gtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgagaatgattccattaatgttgggctcactcttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttagatgtatttgatatttacgctgaagcaagtattttaataaagataatcatatatatatatatattgcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="25108" stop="26077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25408" g_stop="25761" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="387"/>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E695168" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25408" e_stop="25761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</genome_strand>
        <mrna_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGAATGATTCCATTAATGTTGGGCTCACTCTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTAGATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATAAAGATAATCATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691328" ref_strand="+" ref_description="SGN-E691328 [LH_Ea05N06]">
      <seq>ttttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgagaatgattccattaatgttgggctcactcttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatatatatatatatattgcctataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0033H16-wYgOJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0033H16.1" temp_strand="+" temp_description="C09HBa0033H16.1  EF647598.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0033H16 upload_account_name:spain">
        <position start="25109" stop="26077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25408" g_stop="25761" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="382"/>
      <MATCH_line gen_id="C09HBa0033H16.1" gen_strand="+" ref_id="SGN-E691328" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0033H16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25408" e_stop="25761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</genome_strand>
        <mrna_strand>TTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGAATGATTCCATTAATGTTGGGCTCACTCTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>37</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1394" PGL_stop="499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1394" e_stop="683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="1394" e_stop="683" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1394" stop="898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1307" stop="721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1305" stop="700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1305" stop="717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1304" stop="685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1304" stop="686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1298" stop="759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1296" stop="884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1277" stop="690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1273" stop="685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1273" stop="742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1253" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1196" stop="698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</gDNA_template>
            <first_frame> V  A  T  T  A  I  T  C  P  T  K  N  S  Y  I  *  S  P  F  F  L  S  S  S  S  K  K  K  R  K  K  I  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I  N  Y  A  I  S  </first_frame>
            <second_frame>  L  P  P  P  P  L  R  V  Q  Q  K  T  P  I  Y  S  P  P  S  S  F  L  L  H  Q  K  K  K  E  K  K  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  I  M  L  S  L </second_frame>
            <third_frame>   C  H  H  R  H  Y  V  S  N  K  K  L  L  Y  I  V  P  L  L  P  F  F  F  I  K  K  K  K  K  K  N  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K  L  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0033H16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1392" stop="883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHHRHYVSNKKLLYIVPLLPFFFIKKKKKKNPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1394" e_stop="698"/>
            <exon e_start="512" e_stop="499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.998"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="1394" e_stop="698" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="697" i_stop="513" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="512" e_stop="499" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1394" stop="898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1307" stop="721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1305" stop="700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1305" stop="717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1301" stop="717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1298" stop="759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1296" stop="884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1273" stop="742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1253" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1196" stop="698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1156" stop="698"/>
              <exon start="512" stop="499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA : AAAAATGTCAAAGA</gDNA_template>
            <first_frame> V  A  T  T  A  I  T  C  P  T  K  N  S  Y  I  *  S  P  F  F  L  S  S  S  S  K  K  K  R  K  K  I  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I   : K  K  C  Q  R </first_frame>
            <second_frame>  L  P  P  P  P  L  R  V  Q  Q  K  T  P  I  Y  S  P  P  S  S  F  L  L  H  Q  K  K  K  E  K  K  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  :  K  N  V  K   </second_frame>
            <third_frame>   C  H  H  R  H  Y  V  S  N  K  K  L  L  Y  I  V  P  L  L  P  F  F  F  I  K  K  K  K  K  K  N  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K :   K  M  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0033H16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1392" stop="883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHHRHYVSNKKLLYIVPLLPFFFIKKKKKKNPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19563" PGL_stop="19845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19563" e_stop="19845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="19563" e_stop="19845" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19563" stop="19845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</gDNA_template>
            <first_frame> M  C  G  K  L  I  E  I  L  L  F  G  R  I  P  *  C  L  N  L  R  G  F  G  I  Q  I  *  T  C  E  D  K  I  L  N  *  S  H  L  V  R  V  E  E  C  A  L  P  C  H  L  H  C  E  *  F  Q  S  C  W  A  H  S  *  I  P  S  I  G  N  S  R  Q  A  L  D  Q  K  T  *  T  W  R  R  N  L  V  W  L  *  S  K  L  </first_frame>
            <second_frame>  C  V  G  N  *  *  R  F  Y  F  L  G  G  S  L  S  V  *  T  *  E  V  L  A  F  K  F  R  R  A  R  T  R  F  *  T  D  P  I  W  C  G  *  K  N  V  P  C  L  A  T  C  I  A  N  D  S  S  H  V  G  L  T  L  E  F  L  Q  L  E  T  R  G  R  H  *  T  R  R  P  R  H  G  G  E  I  W  F  G  F  S  Q  S  S </second_frame>
            <third_frame>   V  W  E  I  N  R  D  S  T  F  W  E  D  P  L  V  F  K  P  E  R  F  W  H  S  N  L  D  V  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  M  C  P  A  L  P  L  A  L  R  M  I  P  V  M  L  G  S  L  L  N  S  F  N  W  K  L  E  A  G  I  R  P  E  D  L  D  M  E  E  K  F  G  L  A  L  V  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0033H16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19565" stop="19843"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEINRDSTFWEDPLVFKPERFWHSNLDVRGQDFELIPFGAGRRMCPALPLALRMIPVMLGSLLNSFNWKLEAGIRPEDLDMEEKFGLALVKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23855" PGL_stop="25769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23855" e_stop="24735"/>
            <exon e_start="24846" e_stop="25127"/>
            <exon e_start="25349" e_stop="25769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.626" e_score="0.996"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23855" e_stop="24735" e_length="881"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24736" i_stop="24845" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24846" e_stop="25127" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.626">
            <gDNA_intron_boundary i_start="25128" i_stop="25348" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="25349" e_stop="25769" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23855" stop="24252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23860" stop="24412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23890" stop="24436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23915" stop="24488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23915" stop="24444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23915" stop="24437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23916" stop="24364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23917" stop="24537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23917" stop="24483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="24574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24070" stop="24724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24072" stop="24507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24114" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24711" stop="24735"/>
              <exon start="24846" stop="25127"/>
              <exon start="25349" stop="25769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24923" stop="25127"/>
              <exon start="25349" stop="25769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25408" stop="25761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25408" stop="25761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGTCCATGTTCATG : GACCTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG : GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</gDNA_template>
            <first_frame> L  W  I  T  I  H  L  C  L  C  Q  F  *  C  W  L  I  S  *  Q  K  Y  V  A  K  E  A  K  N  F  H  Q  V  H  H  H  G  Q  L  L  E  T  F  S  C  *  V  Q  N  L  I  Y  H  *  P  I  L  Q  K  I  M  V  Q  L  *  V  *  S  *  V  K  *  Q  Q  *  S  F  P  H  Q  P  L  Q  N  K  S  L  K  L  K  I  K  P  F  H  L  D  L  L  L  M  L  F  K  R  T  T  I  T  N  F  L  W  H  G  F  L  F  V  L  N  G  E  R  F  E  E  Y  *  T  L  T  S  Y  L  P  I  S  L  M  Q  I  N  I  *  G  L  K  R  *  N  N  *  L  I  I  V  T  N  V  V  N  K  V  K  L  W  I  *  V  K  L  F  S  R  L  V  L  I  C  C  Q  T  H  F  S  P  R  I  W  L  I  L  F  Q  I  Q  R  *  S  *  R  K  L  Y  G  V  S  W  L  R  *  G  S  L  I  *  *  I  F  S  P  Y  L  K  K  L  I  F  K  E  *  D  V  A  L  S  F  I  L  V  S  C  L  N  F  L  M  I  *  S  T  N  D  W  R  K  R  K  D  Q  D  S  W  K  R  A  M  F  L  K  Y  F  S  I  L  L  K  K  I  L  K  R  L  I  I  I  T  S  S  P  C  S  W :   T  Y  L  V  R  V  L  I  Q  P  Q  A  H  W  N  G  Q  W  Q  N  C  L  N  N  L  R  *  *  K  K  L  K  L  N  L  L  K  S  L  G  K  E  N  *  *  K  K  L  M  F  F  D  S  L  T  C  N  A  L  S  K  K  H  *  D  C  I  H  R  F  R  S  *  F  R  A  K  *  T  K  M  L  N  C  V  T  T  S  S  Q  R  A  H  R :   Y  *  L  M  C  G  R  L  V  E  I  L  L  F  G  R  I  L  *  S  L  N  L  R  D  F  *  I  W  I  W  T  C  E  D  K  I  L  S  *  F  H  L  V  L  D  E  E  Y  A  L  G  C  H  *  H  *  G  *  F  Q  *  C  W  A  H  C  *  I  H  S  I  G  N  L  M  Q  V  L  S  H  K  N  *  T  W  R  R  S  L  V  L  P  *  P  K  L  I  L  C  E  L  S  P  L  L  F  D  R  C  C  I  A  *  S  I  N  I  Y  M  Y  L  I  F  T  L  K  Q  V  F  *  S  K  *  S  Y  I  C  I  L </first_frame>
            <second_frame>  Y  G  L  L  Y  T  C  V  C  V  N  F  S  V  G  *  Y  H  S  K  N  M  *  Q  R  K  Q  K  T  S  T  R  S  I  T  M  A  N  Y  W  K  P  S  V  V  R  C  K  T  S  Y  I  T  S  Q  S  C  K  K  L  W  S  N  Y  E  F  K  V  R  S  N  N  N  N  S  H  F  L  I  N  H  C  K  T  S  P  *  N  S  R  S  S  L  F  I  *  I  C  S  *  C  S  S  S  A  Q  P  L  Q  I  F  C  G  M  A  S  C  L  S  S  M  A  N  A  S  K  N  I  E  H  *  P  L  I  F  Q  *  A  *  C  K  S  T  S  K  V  S  K  G  E  T  I  D  *  L  L  *  Q  M  *  S  T  R  *  S  F  G  Y  R  S  S  C  F  Q  D  *  S  *  F  V  V  K  H  T  F  L  Q  G  F  G  *  S  F  F  R  F  K  G  R  V  E  G  S  Y  M  G  Y  H  G  *  G  R  E  A  *  F  S  R  F  F  P  H  T  *  K  N  *  S  S  R  N  K  T  S  R  Y  H  S  F  W  *  V  V  *  T  F  *  *  F  D  Q  R  T  I  G  G  K  E  K  T  R  I  H  G  K  E  R  C  S  *  N  I  S  Q  Y  Y  *  K  K  S  S  R  D  *  S  *  S  H  Q  V  H  V  H   : G  P  I  W  C  G  Y  *  Y  N  H  K  H  I  G  M  G  N  G  R  I  A  *  T  T  *  D  N  K  K  S  S  S  *  T  C  *  N  H  W  E  R  K  I  N  R  R  S  *  C  F  S  T  P  L  L  A  M  H  Y  Q  R  N  I  K  I  A  S  T  G  S  A  L  S  S  A  Q  S  R  P  R  C  *  I  V  *  L  H  H  P  K  G  L  T   : G  T  S  *  C  V  G  D  W  S  R  F  Y  F  L  E  G  S  F  R  V  *  T  *  E  I  F  E  F  G  S  G  H  A  R  T  R  F  *  V  D  S  I  W  C  W  T  K  N  M  P  W  V  A  T  S  I  E  D  D  S  S  N  V  G  L  T  V  E  F  I  Q  L  E  T  *  C  R  Y  *  A  T  R  I  R  H  G  G  E  V  W  Y  Y  L  S  Q  S  S  S  F  A  S  Y  P  L  S  S  L  I  D  V  A  L  P  S  R  *  I  F  I  C  I  *  Y  L  R  *  S  K  Y  F  N  L  N  N  H  I  Y  V  Y   </second_frame>
            <third_frame>   M  D  Y  Y  T  L  V  F  V  S  I  L  V  L  A  N  I  I  A  K  I  C  S  K  G  S  K  K  L  P  P  G  P  S  P  W  P  I  I  G  N  L  Q  L  L  G  A  K  P  H  I  S  L  A  N  L  A  K  N  Y  G  P  I  M  S  L  K  L  G  Q  I  T  T  I  V  I  S  S  S  T  I  A  K  Q  V  L  K  T  Q  D  Q  A  F  S  S  R  F  A  P  N  A  L  Q  A  H  N  H  Y  K  F  S  V  A  W  L  P  V  C  P  Q  W  R  T  L  R  R  I  L  N  T  N  L  L  S  S  N  K  L  D  A  N  Q  H  L  R  S  Q  K  V  K  Q  L  I  D  Y  C  D  K  C  S  Q  Q  G  E  A  L  D  I  G  Q  V  V  F  K  T  S  L  N  L  L  S  N  T  L  F  S  K  D  L  A  D  P  F  S  D  S  K  V  E  L  K  E  V  I  W  G  I  M  A  E  V  G  K  P  N  L  V  D  F  F  P  I  L  E  K  I  D  L  Q  G  I  R  R  R  A  I  I  H  F  G  K  L  F  K  L  F  D  D  L  I  N  E  R  L  E  E  K  K  R  P  G  F  M  E  K  S  D  V  L  E  I  F  L  N  I  T  E  K  N  P  Q  E  I  D  H  N  H  I  K  S  M  F  M  :  D  L  F  G  A  G  T  D  T  T  T  S  T  L  E  W  A  M  A  E  L  L  K  Q  P  E  I  I  K  K  A  Q  V  E  L  A  E  I  I  G  K  G  K  L  I  E  E  A  D  V  F  R  L  P  Y  L  Q  C  I  I  K  E  T  L  R  L  H  P  P  V  P  L  L  V  P  R  K  V  D  Q  D  V  E  L  C  D  Y  I  I  P  K  G  S  Q  :  V  L  V  N  V  W  A  I  G  R  D  F  T  F  W  K  D  P  L  E  F  K  P  E  R  F  L  N  L  D  L  D  M  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  L  R  M  I  P  V  M  L  G  S  L  L  N  S  F  N  W  K  L  D  A  G  I  E  P  Q  E  L  D  M  E  E  K  F  G  I  T  L  A  K  A  H  P  L  R  A  I  P  S  P  L  *  S  M  L  H  C  L  V  D  K  Y  L  Y  V  F  D  I  Y  A  E  A  S  I  L  I  *  I  I  I  Y  M  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0033H16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23857" stop="24735"/>
                    <exon start="24846" stop="25127"/>
                    <exon start="25349" stop="25672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1482</number_coding_nucleotides>
                  <number_encoded_amino_acids>494</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDYYTLVFVSILVLANIIAKICSKGSKKLPPGPSPWPIIGNLQLLGAKPHISLANLAKNYGPIMSLKLGQITTIVISSSTIAKQVLKTQDQAFSSRFAPNALQAHNHYKFSVAWLPVCPQWRTLRRILNTNLLSSNKLDANQHLRSQKVKQLIDYCDKCSQQGEALDIGQVVFKTSLNLLSNTLFSKDLADPFSDSKVELKEVIWGIMAEVGKPNLVDFFPILEKIDLQGIRRRAIIHFGKLFKLFDDLINERLEEKKRPGFMEKSDVLEIFLNITEKNPQEIDHNHIKSMFMDLFGAGTDTTTSTLEWAMAELLKQPEIIKKAQVELAEIIGKGKLIEEADVFRLPYLQCIIKETLRLHPPVPLLVPRKVDQDVELCDYIIPKGSQVLVNVWAIGRDFTFWKDPLEFKPERFLNLDLDMRGQDFELIPFGAGRRICPGLPLALRMIPVMLGSLLNSFNWKLDAGIEPQELDMEEKFGITLAKAHPLRAIPSPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24364" PGL_stop="23916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24364" e_stop="23916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24364" e_stop="23916" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24364" stop="23916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</gDNA_template>
            <first_frame> D  L  Y  P  K  L  H  L  V  D  Y  I  C  H  N  N  Q  S  I  V  S  P  F  E  T  L  D  V  D  L  H  Q  A  Y  W  K  I  R  G  *  C  S  I  F  F  E  A  F  A  I  E  D  K  Q  E  A  M  P  Q  K  I  C  N  G  C  A  L  E  E  H  *  E  Q  I  *  M  K  R  L  D  L  E  F  *  G  L  V  L  Q  W  L  M  R  K  *  L  L  L  L  F  D  L  T  L  N  S  *  L  D  H  N  F  L  Q  D  W  L  V  I  Y  E  V  L  H  L  T  T  E  G  F  Q  *  L  A  M  V  M  D  L  V  E  V  F  C  F  L  C  Y  I   </first_frame>
            <second_frame>  T  Y  I  Q  S  F  T  L  L  T  T  F  V  T  I  I  N  Q  L  F  H  L  L  R  P  *  M  L  I  C  I  K  L  I  G  R  *  E  V  S  V  Q  Y  S  S  K  R  S  P  L  R  T  N  R  K  P  C  H  R  K  F  V  M  V  V  R  L  K  S  I  R  S  K  S  R  *  K  G  L  I  L  S  F  K  D  L  F  C  N  G  *  *  G  N  D  Y  C  C  Y  L  T  *  L  *  T  H  N  W  T  I  I  F  C  K  I  G  *  *  Y  M  R  F  C  T  *  Q  L  K  V  S  N  N  W  P  W  *  W  T  W  W  K  F  F  A  S  F  A  T  Y  </second_frame>
            <third_frame>   P  I  S  K  A  S  P  C  *  L  H  L  S  Q  *  S  I  N  C  F  T  F  *  D  L  R  C  *  F  A  S  S  L  L  E  D  K  R  L  V  F  N  I  L  R  S  V  R  H  *  G  Q  T  G  S  H  A  T  E  N  L  *  W  L  C  A  *  R  A  L  G  A  N  L  D  E  K  A  *  S  *  V  L  R  T  C  F  A  M  V  D  E  E  M  T  I  V  V  I  *  P  N  F  K  L  I  I  G  P  *  F  F  A  R  L  A  S  D  I  *  G  F  A  P  N  N  *  R  F  P  I  I  G  H  G  D  G  P  G  G  S  F  L  L  P  L  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0033H16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 74920 bytes spliced alignments in total
$ 37 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 9560 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2390 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 48 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:22:21
-->
