##gff-version 3
##sequence-region C07SLe0071O22.1 1 11558
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match	263	2917	1.000	+	0	ID=SGN-E258745_alignment_1;Target=SGN-E258745 42 565 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	263	391	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E258745 42 170 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1589	1715	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E258745 171 297 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E258745 298 346 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E258745 347 422 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_5;Target=SGN-E258745 423 492 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2845	2917	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_6;Target=SGN-E258745 493 565 +;Parent=SGN-E258745_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match	1054	1584	0.994	+	0	ID=SGN-E311561_alignment_1;Target=SGN-E311561 1 530 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1054	1584	0.994	+	0	ID=GTH_SGN_E_tom_potato_match_part_7;Target=SGN-E311561 1 530 +;Parent=SGN-E311561_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match	1620	2917	1.000	+	0	ID=SGN-E251465_alignment_1;Target=SGN-E251465 1 364 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1620	1715	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_8;Target=SGN-E251465 1 96 +;Parent=SGN-E251465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_9;Target=SGN-E251465 97 145 +;Parent=SGN-E251465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_10;Target=SGN-E251465 146 221 +;Parent=SGN-E251465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_11;Target=SGN-E251465 222 291 +;Parent=SGN-E251465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2845	2917	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_12;Target=SGN-E251465 292 364 +;Parent=SGN-E251465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match	1663	3058	0.995	+	0	ID=SGN-E715037_alignment_1;Target=SGN-E715037 1 458 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1663	1715	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_13;Target=SGN-E715037 1 53 +;Parent=SGN-E715037_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	1849	1897	0.918	+	0	ID=GTH_SGN_E_tom_potato_match_part_14;Target=SGN-E715037 54 98 +;Parent=SGN-E715037_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_15;Target=SGN-E715037 99 174 +;Parent=SGN-E715037_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_16;Target=SGN-E715037 175 244 +;Parent=SGN-E715037_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2845	3058	0.991	+	0	ID=GTH_SGN_E_tom_potato_match_part_17;Target=SGN-E715037 245 458 +;Parent=SGN-E715037_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match	2026	3058	0.991	+	0	ID=SGN-E234465_alignment_1;Target=SGN-E234465 1 335 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2026	2075	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_18;Target=SGN-E234465 1 50 +;Parent=SGN-E234465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2350	2419	0.957	+	0	ID=GTH_SGN_E_tom_potato_match_part_19;Target=SGN-E234465 51 121 +;Parent=SGN-E234465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	match_part	2845	3058	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_20;Target=SGN-E234465 122 335 +;Parent=SGN-E234465_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	gene	263	3058	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	mRNA	263	3058	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	263	391	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	1589	1715	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_2;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_3;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_4;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_5;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	2845	3058	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_6;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	mRNA	1054	1584	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_2;Parent=GTH_SGN_E_tom_potato_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato_potato	exon	1054	1584	0.994	+	0	ID=GTH_SGN_E_tom_potato_exon_7;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C07SLe0071O22.1	RepeatMasker	nucleotide_motif	3866	4178	1907	-	0	ID=Copia00110_alignment_1;Target=Copia00110 2393 2728 -
C07SLe0071O22.1	RepeatMasker	nucleotide_motif	6011	6136	861	+	0	ID=HarbN_I_alignment_1;Target=HarbN_I 2 127 +
C07SLe0071O22.1	RepeatMasker	nucleotide_motif	6159	6218	266	-	0	ID=Copia00089_alignment_1;Target=Copia00089 1370 1431 -
C07SLe0071O22.1	RepeatMasker	nucleotide_motif	11461	11547	381	-	0	ID=Copia00172_alignment_1;Target=Copia00172 5208 5293 -
C07SLe0071O22.1	BLAST_tomato_bac_ends	match	6	198	367	+	0	ID=C07SLe0071O22.1-SL_EcoRI0071O22_SP6_342846_1;blast_gaps=0;Target=SL_EcoRI0071O22_SP6_342846 1 193 +;is_problematic=0;blast_percent_identity=98.96;blast_mismatches=2;blast_evalue=8e-99
C07SLe0071O22.1	BLAST_tomato_bac_ends	match	259	407	295	+	0	ID=C07SLe0071O22.1-SL_EcoRI0071O22_SP6_342846_2;blast_gaps=0;Target=SL_EcoRI0071O22_SP6_342846 254 402 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=3e-77
C07SLe0071O22.1	BLAST_tomato_bac_ends	match	554	798	363	+	0	ID=C07SLe0071O22.1-SL_EcoRI0071O22_SP6_342846_3;blast_gaps=0;Target=SL_EcoRI0071O22_SP6_342846 549 793 +;is_problematic=0;blast_percent_identity=99.18;blast_mismatches=2;blast_evalue=1e-97
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match	263	2917	1.000	+	0	ID=SGN-E258745_alignment_2;Target=SGN-E258745 42 565 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	263	391	1.000	+	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E258745 42 170 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1589	1715	1.000	+	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E258745 171 297 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E258745 298 346 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E258745 347 422 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_match_part_5;Target=SGN-E258745 423 492 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2845	2917	1.000	+	0	ID=GTH_SGN_E_tom_match_part_6;Target=SGN-E258745 493 565 +;Parent=SGN-E258745_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match	1054	1584	0.994	+	0	ID=SGN-E311561_alignment_2;Target=SGN-E311561 1 530 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1054	1584	0.994	+	0	ID=GTH_SGN_E_tom_match_part_7;Target=SGN-E311561 1 530 +;Parent=SGN-E311561_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match	1620	2917	1.000	+	0	ID=SGN-E251465_alignment_2;Target=SGN-E251465 1 364 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1620	1715	1.000	+	0	ID=GTH_SGN_E_tom_match_part_8;Target=SGN-E251465 1 96 +;Parent=SGN-E251465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_match_part_9;Target=SGN-E251465 97 145 +;Parent=SGN-E251465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_match_part_10;Target=SGN-E251465 146 221 +;Parent=SGN-E251465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_match_part_11;Target=SGN-E251465 222 291 +;Parent=SGN-E251465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2845	2917	1.000	+	0	ID=GTH_SGN_E_tom_match_part_12;Target=SGN-E251465 292 364 +;Parent=SGN-E251465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match	1663	3058	0.995	+	0	ID=SGN-E715037_alignment_2;Target=SGN-E715037 1 458 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1663	1715	1.000	+	0	ID=GTH_SGN_E_tom_match_part_13;Target=SGN-E715037 1 53 +;Parent=SGN-E715037_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	1849	1897	0.918	+	0	ID=GTH_SGN_E_tom_match_part_14;Target=SGN-E715037 54 98 +;Parent=SGN-E715037_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_match_part_15;Target=SGN-E715037 99 174 +;Parent=SGN-E715037_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_match_part_16;Target=SGN-E715037 175 244 +;Parent=SGN-E715037_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2845	3058	0.991	+	0	ID=GTH_SGN_E_tom_match_part_17;Target=SGN-E715037 245 458 +;Parent=SGN-E715037_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match	2026	3058	0.991	+	0	ID=SGN-E234465_alignment_2;Target=SGN-E234465 1 335 +
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2026	2075	1.000	+	0	ID=GTH_SGN_E_tom_match_part_18;Target=SGN-E234465 1 50 +;Parent=SGN-E234465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2350	2419	0.957	+	0	ID=GTH_SGN_E_tom_match_part_19;Target=SGN-E234465 51 121 +;Parent=SGN-E234465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	match_part	2845	3058	1.000	+	0	ID=GTH_SGN_E_tom_match_part_20;Target=SGN-E234465 122 335 +;Parent=SGN-E234465_alignment_2
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	gene	263	3058	.	+	0	ID=GTH_SGN_E_tom_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	mRNA	263	3058	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	263	391	1.000	+	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	1589	1715	1.000	+	0	ID=GTH_SGN_E_tom_exon_2;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	1849	1897	1.000	+	0	ID=GTH_SGN_E_tom_exon_3;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	2000	2075	1.000	+	0	ID=GTH_SGN_E_tom_exon_4;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	2350	2419	1.000	+	0	ID=GTH_SGN_E_tom_exon_5;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	2845	3058	1.000	+	0	ID=GTH_SGN_E_tom_exon_6;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	mRNA	1054	1584	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_2;Parent=GTH_SGN_E_tom_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_E_tomato	exon	1054	1584	0.994	+	0	ID=GTH_SGN_E_tom_exon_7;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C07SLe0071O22.1	AUGUSTUS_tom_cdna	gene	263	2861	1	+	.	ID=g1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	transcript	263	2861	.	+	.	ID=g1.t1_1;Parent=g1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	263	391	.	+	0	ID=g1.t1.cds_1;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	1589	1715	.	+	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	1849	1897	.	+	2	ID=g1.t1.cds_3;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	2000	2075	.	+	1	ID=g1.t1.cds_4;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	2350	2419	.	+	0	ID=g1.t1.cds_5;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	CDS	2845	2861	.	+	2	ID=g1.t1.cds_6;Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_cdna	stop_codon	2859	2861	.	+	0	Parent=g1.t1_1
C07SLe0071O22.1	AUGUSTUS_tom_ugs	gene	263	2861	1	+	.	ID=g1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	transcript	263	2861	.	+	.	ID=g1.t1_2;Parent=g1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	263	391	.	+	0	ID=g1.t1.cds_7;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	1589	1715	.	+	0	ID=g1.t1.cds_8;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	1849	1897	.	+	2	ID=g1.t1.cds_9;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	2000	2075	.	+	1	ID=g1.t1.cds_10;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	2350	2419	.	+	0	ID=g1.t1.cds_11;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	CDS	2845	2861	.	+	2	ID=g1.t1.cds_12;Parent=g1.t1_2
C07SLe0071O22.1	AUGUSTUS_tom_ugs	stop_codon	2859	2861	.	+	0	Parent=g1.t1_2
C07SLe0071O22.1	GenomeThreader_SGN_U_tomato	match	1054	1584	0.994	+	0	ID=SGN-U346248_alignment_1;Target=SGN-U346248 1 530 +
C07SLe0071O22.1	GenomeThreader_SGN_U_tomato	match_part	1054	1584	0.994	+	0	ID=GTH_SGN_U_tom_match_part_1;Target=SGN-U346248 1 530 +;Parent=SGN-U346248_alignment_1
C07SLe0071O22.1	GenomeThreader_SGN_U_tomato	gene	1054	1584	.	+	0	ID=GTH_SGN_U_tom_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_U_tomato	mRNA	1054	1584	.	+	0	ID=GTH_SGN_U_tom_gene_1_AGS_1;Parent=GTH_SGN_U_tom_gene_1
C07SLe0071O22.1	GenomeThreader_SGN_U_tomato	exon	1054	1584	0.994	+	0	ID=GTH_SGN_U_tom_exon_1;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	gene	263	2861	1	+	.	ID=g1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	transcript	263	2861	.	+	.	ID=g1.t1_3;Parent=g1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	263	391	.	+	0	ID=g1.t1.cds_13;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	1589	1715	.	+	0	ID=g1.t1.cds_14;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	1849	1897	.	+	2	ID=g1.t1.cds_15;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	2000	2075	.	+	1	ID=g1.t1.cds_16;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	2350	2419	.	+	0	ID=g1.t1.cds_17;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	CDS	2845	2861	.	+	2	ID=g1.t1.cds_18;Parent=g1.t1_3
C07SLe0071O22.1	AUGUSTUS_tom_pot_cdna	stop_codon	2859	2861	.	+	0	Parent=g1.t1_3