<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-02-04 15:03:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569228" ref_strand="+" ref_description="SGN-U569228 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tggcggagagagagagagagagagagttgtcccttttctgccgcattgtattatacattttaagtgaagctacaggtttcacatattttccagaattcaaaatttccatgctcatatgtttgataattgatgaaatgatgtaatccagagccaaactcatagctttgaagattgaggcgagctagctaagcatgaaaagagtaaagaaggagacaatctcaataattgattgttttgtctgttttagttacttctagcctctagatatttcccattttttcttctacttctatagtaggatgttgtgcagaatggattgcttatggagtaatgctatttcccctattgaatttatatggtttccagctaaaatttaactattcaattctcaaagcagatagtattttagatgctagtaagacatccttctacactccatggagggatatgtaccttggaggctaatctcaaatgtattttgcacccttaatgagctgttgtttgccacaagtaatattacgttatagtctattgtcacttgacctgtaggttgttttagtaaagcttttctgtacgtcattggttgcctggtgtgtaatctatatgttatgtagcaaaataattgtgcacctcatatgctgattttcatttataaacttgctgccttcgtttcaggttttagtccttctcatttagtaagtgttccatctctgtcactttacggcagatccatgaaggtgtgtttaccttgcttaagttagcaagaactgtttttgcaattccttctagtgtatggctgtgcagagctagcacactaaacatgcaatataagaaagaggagatacatattaatttgattatcattcagaaatttgctgttagtgtctcacatgttagtgaagctggtgaactttattaaagaaaattgaatcttggcttaacgtgtgttttacattgcttatatccagtttgttcaagtgggttgtgtgatatatttaggtggaaaactttggattttcatttctcaaaaggaggtttctgtgattcttcaatgtggagaagtcagatattgttgtcttgtggtgagctgaagaacgtaaaagagttgcattcagtaccaacagagtttccactagatttgggtgtcaagttgtgctaagcttacacaactgagtatatatatgtgtcttctaacttggccccaagcccccaattgttattcgtcttccaactgtgtgtgtgcagataggtatgtaaacttgtatacgttgaacatgtaacccattttctcattgaatgaaaaggtacgaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7361" stop="5446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7062" g_stop="5746" g_length="1317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1316" r_length="1316" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U569228" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1317</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7062" e_stop="5746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGAGAGAGAGAGAGAGAGAGAGAGTTGTCCCTTTTCTGCCGCATTGTATTATACATTTTAAGTGAAGCTACAGGTTTCACATATTTTCCAGAATTCAAAATTTCCATGCTCATATGTTTGATAATTGATGAAATGATGTAATCCAGAGCCAAACTCATAGCTTTGAAGATTGAGACGAGCTAGCTAAGCATGAAAAGAGTAAAGAAGGAGACAATCTCAATAATTGATTGTTTTGTCTGTTTTAGTTACTTCTAGCCTCTAGATATTTCCCATTTTTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGTTGGTGAACTTTATTAAAGAAAATTGAATCTT-GCTTAACGTGTGTTTTACATTGCTTATATCCAGTTTGTTCAAGTGGGTTGTGTGATATATTTAGGTGGAAAACTTTGGATTTTCATTTCTCAAAAGGAGGTTTCTGTGATTCTTCAATGTGGAGAAGTCAGATATTGTTGTCTTGTGGTGAGCTGAAGAACGTAAAAGAGTTGCATTCAGTACCAACAGAGTTTCCACTAGATTTGGGTGTCAAGTTGTGCTAAGCTTACACAACTGAGTATATATATGTGTCTTCTAACTTGGCCCCAAGCCCCCAATTGTTATTCGTCTTCCAACTGTGTGTGTGCAGATAGGTATGTAAACTTGTATACGTTGAACATGTAACCCATTTTCTCATTGAATGAAAAGGTACGAAATAAA</genome_strand>
        <mrna_strand>TGGC-G-GAGAGAGAGAGAGAGAGAGAGTTGTCCCTTTTCTGCCGCATTGTATTATACATTTTAAGTGAAGCTACAGGTTTCACATATTTTCCAGAATTCAAAATTTCCATGCTCATATGTTTGATAATTGATGAAATGATGTAATCCAGAGCCAAACTCATAGCTTTGAAGATTGAGGCGAGCTAGCTAAGCATGAAAAGAGTAAAGAAGGAGACAATCTCAATAATTGATTGTTTTGTCTGTTTTAGTTACTTCTAGCCTCTAGATATTTCCCATTTTTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGCTGGTGAACTTTATTAAAGAAAATTGAATCTTGGCTTAACGTGTGTTTTACATTGCTTATATCCAGTTTGTTCAAGTGGGTTGTGTGATATATTTAGGTGGAAAACTTTGGATTTTCATTTCTCAAAAGGAGGTTTCTGTGATTCTTCAATGTGGAGAAGTCAGATATTGTTGTCTTGTGGTGAGCTGAAGAACGTAAAAGAGTTGCATTCAGTACCAACAGAGTTTCCACTAGATTTGGGTGTCAAGTTGTGCTAAGCTTACACAACTGAGTATATATATGTGTCTTCTAACTTGGCCCCAAGCCCCCAATTGTTATTCGTCTTCCAACTGTGTGTGTGCAGATAGGTATGTAAACTTGTATACGTTGAACATGTAACCCATTTTCTCATTGAATGAAAAGGTACGAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565268" ref_strand="-" ref_description="SGN-U565268 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tttttttttnttatatgtaaatattttacttaacaaagatgcatcagatcttcatattgttacacatcttgtaaatgtgacatgcttacttgaagttaacaacttaggtatatcaggagctgtgatacattattcagcaacacatttataaattttactaaaacatgaaattaagtaattgtttatccggaaaagcttgaaaaggaaaattgaacaaattggacatcacagcttgactatgttttatgtttacttggtaagttgaaaagaaaaaaattgtcacttggaaagtattatattggcttagaaatgtcatgtttttttcccagagatatgattgactaacctccttatgttacacaaatctgatcaagtaccatattttgtactctgatgatattgatatcttttgaaggcaaagttgggacttttcctgatgtgacacaagctccaacaatcctcaggaactatcggagggggagagtctcaagggctaaatccctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7849" stop="9577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8138" g_stop="8453" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9093" g_stop="9284" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="508" r_length="192" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U565268" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565268" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8138" e_stop="8453"/>
          <exon e_start="9093" e_stop="9284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTACTACGTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCATGTTTACTTGGAAGTCTTGCATGTTTGGGATTTATAATTTAATGGAACCTTTTATTTTAAAGAAAGATACCTCTTATTCCACCTTTATCCTTACATGTTGGAACTGAAGGTATGATATGAAGTGTACTTGTGCTGTCTATTTTCTCATGTACCATATTAATGTTTTGTCTTCACTGCATTGACATGCAGAAGCCAAACTGAAGGCACAGTCCATTAGATATCCATTCGATGATCTCTTGAGTCCGATAAACAGTTGACTGAATATCCTCCTCCATGCATAGAATTCGACGTCTCAATGGAATGTGTAGGGGATCATCTGATGGTCTGGGACTTCTGTACCTCATTTGGAAGGTTATTGCACCTGTCATCATTCTCCCTTGAAAATTTTGAAAGGGCTGTCTGTCAAAAGGGCAGCAATATTGTCCTCATATCTGAATGTCATTCAGCTTTCTTTTGAATGATAACAGTGAGTATTTCATAGCTGTACAGAGGGGAAAAGACCAAAGCTGAAGGTAATATTTGAATCATGTAATCTTGTTCCCTTTAAAGGTCAAGAATTCTCAACTTCTGAAGGATTTGTTTTTTTTCCAGACATATGATTGATTAACTTTCCCTTAAAAACAACTCTTGAAGGATGTATGTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATCCAGTCTAA</genome_strand>
        <mrna_strand>TTTTTTTTTNTTATATGTAAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTCCCAGAGATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTGATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATCCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601130" ref_strand="+" ref_description="SGN-U601130 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gagataacgtggatcaatatatgatatttctattataaaggttaggcaatatatgatcttcctgagtttgttaggatggattacttgattgtctgatgttttgtgttagttgttgaattatgtaccgacatcccttttacacccatgattcactcaccatggacgcgctagcttttacaattgaatcttgggaataatgtaagtatatacacttaatagcactagagcttacttgttttttcatggagcgaaattatggacaaaacatgtgctcccaaagacatgaagtggaagtgagaacaaatgtgatttgagtaaacaaaaaggagtaaggtaatgactactgtgctttgtgtgctctattgcctcaagatttgtgcatgtatttggtgatctatgttgatgatatgctcatcatatataatgatgaaaagaaaaagctccaacttgaagaataaccatttcagaccaagaacctagatgtattgatatacttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11544" stop="10447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11245" g_stop="10747" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U601130" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11245" e_stop="10747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAGGTGGAAGTGAGAACAAAGGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTTCTTTGTGTGTTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGTACCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</genome_strand>
        <mrna_strand>GAGATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAAGTGGAAGTGAGAACAAATGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTGCTTTGTGTGCTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGCTCCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="-" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25642" stop="26874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25942" g_stop="26250" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26251" i_stop="26361" i_length="111">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26575" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="519" r_length="211" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U593741" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25942" e_stop="26250"/>
          <exon e_start="26362" e_stop="26575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCTCCTCGTGTCGGTACGTGTCACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCAATCCTCATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAATGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTTTCCTAGTACCGGAACGTGGCACCCGATCCATATTCTATCATGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGATCGTGACACTCCGATCCTCATATACTATCCTAGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGGTTT</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTGGCACCGGAACGTGGCAC-CCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTG...............................................................................................................GTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27726" stop="28503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28026" g_stop="28202" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28026" e_stop="28202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27941" stop="29033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28241" g_stop="28733" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28241" e_stop="28733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGGATGCAATGTTTTCCAAAACATAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCGATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTAAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29202" stop="30572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29506" g_stop="30317" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29506" e_stop="30317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCT-ACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32482" stop="29334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32183" g_stop="31313" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31312" i_stop="30198" i_length="1115">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30197" g_stop="29634" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>1435</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32183" e_stop="31313"/>
          <exon e_start="30197" e_stop="29634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATAT-CCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCCTCCTCATTTGCTAGTGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCTGTTATTATCAATTGAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTGATGAGCTTGATGAACAGTATTTTTAAGCCATATTTAGACCTCTTCGTGATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32513" stop="29725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32213" g_stop="30024" g_length="2190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>2190</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32213" e_stop="30024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATAT-CCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCCTCCTCATTTGCTAGTGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31850" stop="29814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31550" g_stop="31336" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31335" i_stop="30592" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30591" g_stop="30077" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="723" r_length="508" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31550" e_stop="31336"/>
          <exon e_start="30591" e_stop="30077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCCTCCTCATTTGCTAGTGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT-TT-TGT-TGTA-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592954" ref_strand="+" ref_description="SGN-U592954 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195426549|ref|XP_002061389.1| (e_value=0) GK20893; (*SWP) sp|Q39WP5|NHAA_GEOMG (e_value=0) Na(+)/H(+) antiporter nhaA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nhaA; ">
      <seq>ggaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="30021" stop="31114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30321" g_stop="30814" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U592954" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30321" e_stop="30814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATG</genome_strand>
        <mrna_strand>GGAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="30408" stop="32512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30708" g_stop="32213" g_length="1506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>1506</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30708" e_stop="32213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCTGATCTCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTACTCCAGAATAACGGCCTCTACCATGACTACCTCTACCTCTAACGTTTAGAGGTCTATAACTCTATTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACAATTAAAATCACCTCCCTTTCGAAACCTTTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAAGGTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCC-GGGGATATACTTCTCCAAAAACAAACTAGAGAATGAGGCCCAAG-CATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32513" stop="30490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32213" g_stop="30790" g_length="1424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32213" e_stop="30790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATAT-CCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32495" stop="31171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32195" g_stop="31445" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32195" e_stop="31445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATAT-CCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32449" stop="31295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32149" g_stop="31595" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32149" e_stop="31595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="-" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32713" stop="33945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33013" g_stop="33233" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33234" i_stop="33345" i_length="112">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33346" g_stop="33646" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="519" r_length="298" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U593741" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33013" e_stop="33233"/>
          <exon e_start="33346" e_stop="33646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTTTCCTGGTGTCGGAACGTGACACTCCAATCCTCATTCTATCCTGGTGTCGAAACGTTACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCTTGGTGTCGAAACGTGACACCCAATCCATATTCTTTCCTGATACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATACTGGTACCGAAACGTGGCACTCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAATAGATTAGGGTTT</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCA................................................................................................................ATATACTATCCTGGCACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564229" ref_strand="+" ref_description="SGN-U564229 Tomato 200607#2 [9 ESTs aligned] ">
      <seq>gaaaaaacatatccaaatccaaaatcaaaataaaatccaaaagcaatgtcaccacgaaatcttatccaatttacctttatcccatattttatttacctatatataccctttataatacctcactttttcaaaaatcacaattgtagataaataaatatcctctatatattacaaatatgaagtttttaccggaattgaggacgtgttgtggcggcgcaaccatcaagacggtgagggatgggctacctcaggtggagaaaaaggagcgggcgctagtaaatcgatcgggaagtaaacgcgtggtttctcggggaaggaaattgaggaaaatggaggattggaaaccggcgctcaacgtcatctccgaggataacgcgatcgccgacgtcgatcggtacagtttcgatcaaaatacggttggaaattccgggaataaaagggccgggaaatctggtagcgcacagaagaagttcggcgacggttactggtaactaatttctcttttttcttttcactgtttcatgtcttttttttaaccaaactattgttgctcacatgatattttccaatgttttgggcaaaattattagttttactattttctgcggatatttctagactaaattactaatcggagaatttctatttaattttgtaattcaaaaattatttttattccattttcgttatttttatcattattttactttgtaaaggataattttctttttttgtatatatgcaggaaaatgtcgtacgccgttgcgatgcctgctttctcaggaatgcatttttagtgtggagttgtgtttgtgtttgtaaatagttagatttttttttcacccctaaatggaaatttaaaagcaaaaatatatgttttttttttaaatttcctttacgatttctactttagttgatatgtggtttttgaattattttaattttatattatatccttgtgataaaacttgtttttttttttgtacaaagataaaatttggaaaaggtcatcttttttcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42329" stop="43957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42629" g_stop="43657" g_length="1029"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1026" r_length="1026" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U564229" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42629" e_stop="43657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATA-TACAAATATGAAGTTTTTACCGGAATT---GACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAATTTCTCTTTTTTCTTTTTCTTTTTCTTTTCACTGTTTCATGACTTTTTTTTTAACCAAACTA---TTGCTCACATGATATTTTCCAATGTTTTGGGCCAAATTATTAGTTTTACTA-----T-C-GATATTTCTAGACTAAATTATTAATCGGAGAATTTTTATTTAA-TCTGTAATTCAAAAATTATTTTTATTCCTTTTTAGTTGTTTTTATTATTATTTTACTTTGGAGAGGATAATTTATTTTTTTTTGGTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGCATTTGTGTTCGTAAATAATTAGATTTTTTGTTCACCCCTAAATGGAAATTTAAAAAAAAGCAAAAATATATG-TTTTTTTTTAAATTTCCTTTATGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAATC-T-TTTTTTTTTTTGTACATAGATAAAATTTGGTAAAGGTCATCTTTTTTCTTCCTTT</genome_strand>
        <mrna_strand>GAAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCACGAAATCTTATCCAATTTACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCAAAAATCACAA-T-TGTAGATAAATAAATATCCTCTATATATTACAAATATGAAGTTTTTACCGGAATTGAGGACGTGTTGTGGCGGCGCAACCATCAAGACGGTGAGGGATGGGCTACCTCAGGTGGAGAAAAAGGAGCGGGCGCTAGTAAATCGATCGGGAAGTAAACGCGTGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACGTCGATCGGTACAGTTTCGATCAAAATACGGTTGGAAATTCCGGGAATAAAAGGGCCGGGAAATCTGGTAGCGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAA-TT-TC-----TC----T-TTTTTCTTTTCACTGTTTCATGTC-TTTTTTTTAACCAAACTATTGTTGCTCACATGATATTTTCCAATGTTTTGGGCAAAATTATTAGTTTTACTATTTTCTGCGGATATTTCTAGACTAAATTACTAATCGGAGAATTTCTATTTAATTTTGTAATTCAAAAATTATTTTTATTCCATTTTCGTTATTTTTATCATTATTTTACTTTGTAAAGGATAATTT-TCTTTTTTT-GTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGTGTTTGTGTTTGTAAATAGTTAGATTTTTTTTTCACCCCTAAATGGAAATTT----AAAAGCAAAAATATATGTTTTTTTTTTAAATTTCCTTTACGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAAACTTGTTTTTTTTTTTGTACAAAGATAAAATTTGGAAAAGGTCATCTTTTTTCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589598" ref_strand="+" ref_description="SGN-U589598 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ccgcaactgtatagataaataaatatcctttatatatacaaatatgaagtttttaccggaattgacgtgttgtggcggcgaaaccatcaagacggcgagggatgggctacctccggtggagaaaaaggagtcggcgctagtaaatcgatcgggaagtaaacgcgcggtttctcggggaaggaaattgaggaaaatggaggattggaaaccggcgctcaacgtcatctccgaggataacgcgatcgccgacatcgatcggtacagttacgatcaaaatacggttggaaattccgggaatgaaagagccgggaaatctggtagagcacagaagaagttcggcgacggttactggaaaatgtcgtacgccgttgcgatgcctgctttctcaggaatgcatttttagtgtggagttgcatttgtgttcgtaaataattagattttttgttcacccctaaatggaaatttaaaaaaaagcaaaaatatatgtttttttttaaatttcctttatgatttctactttagttgatatgtggtttttgaattattttaattttatattatatccttgtgataaatcttttttttttttgtacatagataaaatttggtaaaggtcatcttttttcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42464" stop="43957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="43113" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43114" i_stop="43375" i_length="262">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43376" g_stop="43657" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="633" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U589598" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="43113"/>
          <exon e_start="43376" e_stop="43657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTGTATAGATAAATAAATATCCTTTATATATACAAATATGAAGTTTTTACCGGAATTGACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAATTTCTCTTTTTTCTTTTTCTTTTTCTTTTCACTGTTTCATGACTTTTTTTTTAACCAAACTATTGCTCACATGATATTTTCCAATGTTTTGGGCCAAATTATTAGTTTTACTATCGATATTTCTAGACTAAATTATTAATCGGAGAATTTTTATTTAATCTGTAATTCAAAAATTATTTTTATTCCTTTTTAGTTGTTTTTATTATTATTTTACTTTGGAGAGGATAATTTATTTTTTTTTGGTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGCATTTGTGTTCGTAAATAATTAGATTTTTTGTTCACCCCTAAATGGAAATTTAAAAAAAAGCAAAAATATATGTTTTTTTTTAAATTTCCTTTATGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAATCTTTTTTTTTTTTGTACATAGATAAAATTTGGTAAAGGTCATCTTTTTTCTTCCTTT</genome_strand>
        <mrna_strand>CCGCAACTGTATAGATAAATAAATATCCTTTATATATACAAATATGAAGTTTTTACCGGAATTGACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTG......................................................................................................................................................................................................................................................................GAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGCATTTGTGTTCGTAAATAATTAGATTTTTTGTTCACCCCTAAATGGAAATTTAAAAAAAAGCAAAAATATATGTTTTTTTTTAAATTTCCTTTATGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAATCTTTTTTTTTTTTGTACATAGATAAAATTTGGTAAAGGTCATCTTTTTTCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594060" ref_strand="+" ref_description="SGN-U594060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147778480|emb|CAN69431.1| (e_value=2e-91) hypothetical; (*ATH) ATMG00710.1 (e_value=1e-17) |; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-57) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gctttctggtaaggcaagggagaatggaattgctgagaggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactgtgggctgcccaaaacactttgggcggatgctgtgagcaccgctgcatacttgatcaacaggggaccatcagttcctctagggttcaagattccaaaggaggtgtggacaggaaaagaactcaagtactcacacttgaggacttttggttgcactgcttatgttcatgttgatccagaaaagagagacaagcttgatgctaaggctgtgaagtgttacttcataggatatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgacgtgacatttgatgagtctgtcctgtacaaggacatagagcagaaggttctagagattacaaagcaagtgggagttgaggttgagttgaagaagagtaaccccagagatgtcaaagcagatactcaaccaactcctactaaagaatctgaagtggagcaagttacacctgagcaggttttaaggagatcatccagatccatcagggcaccagataggtattcaccttcattacactatctattgctgactgatgaagggaaaccaaagtcttttgatgaggccctacaggtgcaggattcgatcaagtgggagcaagtcatggatgatgagatgaggtcacttgagaagaacaacacatgggtgttgactgagctacctgtagggaagagagctttgctgaacaagtgggtgtacagaaatcagactgaaccagatggaaaaaaaaggttcaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="65191" stop="63755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64893" g_stop="64055" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U594060" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64893" e_stop="64055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCCGATAAGGCAAGGCAGAATGGAATTGTTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTATGGGTTGCCCAAAACACTTTGGGCAGATGCTATGAGCACAGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTTAGGACTTTTGGGTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGCTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTGAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTGTTAAGGAGATCATCCAAATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTGATGAGGCCCTACAGGTGGAGGATTCGATCAAGTGGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAATGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATAGCAAAAAAAGGTTCAAGGCTC</genome_strand>
        <mrna_strand>GCTTTCTGGTAAGGCAAGGGAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACCGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTCTAGGGTTCAAGATTCCAAAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCTAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACATAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGAAGAAGAGTAACCCCAGAGATGTCAAAGCAGATACTCAACCAACTCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTTTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAAGGGAAACCAAAGTCTTTTGATGAGGCCCTACAGGTGCAGGATTCGATCAAGTGGGAGCAAGTCATGGATGATGAGATGAGGTCACTTGAGAAGAACAACACATGGGTGTTGACTGAGCTACCTGTAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTACAGAAATCAGACTGAACCAGATGGAAAAAAAAGGTTCAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="71253" stop="74440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71552" g_stop="72425" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72426" i_stop="73576" i_length="1151">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73577" g_stop="74140" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>1438</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71552" e_stop="72425"/>
          <exon e_start="73577" e_stop="74140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAGAGGACGTCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAAAGAGGGTGAGGAAGGGGAAAGTGAGCAAGTGCAGAATGAGGAATTACCACCCCAACCTACCTCAGAGATGATTAACCAGGTTCTTGCTTATCTTAGCGGGTTAACTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCCCAGGTTCCGGAGGTACAACCTGCAAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGTCACGTTTCCTCGTTTGACTACAGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTCAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGTTACTACATAAAATGGGCATACTGGAACGATTTGGCGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCCGCACAGGCACCACCTATGACTTGGGCGTCGTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGGACCTTGAGGGATAGGAGGAGAGATGAGTTCTTGAGCCTAGAGCAAGGCAAGATGTCGGTGACTGCGTATGAGGCTAAGTTCCGTGCATTATCCAGGCATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAGGGGTTGAGGTCAGATTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAGAAAGTGGTAGACTTCGTGATAGAGGTGGAGGGAGTGAAGCCAGATGACTTCACCATGACACCGACATCTAAAAGGTTTCGTAAGGGAGGTGAGTTTAATGGTTCTTACTCCAGAGGGCAGGGTTCAGGAGGTTATCCAGCCCGACCTATTCAGTCTTCACTGCAGACTGTAGTTGGGGGTCCACCGCAGACCGGTCAACACTTCTCTGAGTTTGGAGGTCATCCCCAGACTTCGTCATTCTCATAGAGACCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCAAATAGTCAGAGGTAGAGGTGGTCATGGAAGAGGCCATCATTCTGGAGGGCGTGGTGGCCGAGGTAATGGCGGTCACCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAAACTGGTAGAGGCAACGGGCAGAAAGGTGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCGGAAGCGGAGACATCAGATGCTGTTATCACAGGTAATCTTTTGGTTTGTGATTGTATGTTTTCTGTATTATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTTCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTTAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCATATTTTGCAATCTTAGATTATAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCATGCTAAGAGAATGGTTAGTAAAGGGTGCTCAGCTTTCTTTGCACATCTCCGGGATGATACTACCAAGGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTAACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCAATTTCCATACCTCCTTATAGAATGGCTCCAGCAGATTTAAGGGAGTTAAAGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGAATAGACTACCGGCAGTTGAACAAGGTAACTATTAAGAACAAGTATCGCATTCGTCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACCTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTATAGTAATGTCTTTTGGTCTTATGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATCTGGATCTCTTTGTGATGGTATTTATCGATGATATACTGATATACTCTAAGAGTAAGAAGGAACATGAGGAGCATTTGAGAATTGTGGTGGAAGTGTTAAGGGAGAAAAGGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATTCAGTGTCCTTTTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGC-GGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73577" stop="72653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73278" g_stop="72953" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73278" e_stop="72953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTATAATCTAAGATTGCAAAATATGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTAAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGAAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAAACATACAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72675" stop="73914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72975" g_stop="73614" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72975" e_stop="73614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTTCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTTAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCATATTTTGCAATCTTAGATTATAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCATGCTAAGAGAATGGTTAGTAAAGGGTGCTCAGCTTTCTTTGCACATCTCCGGGATGATACTACCAAGGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTAACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCAATTTCCATACCTCCTTATAGAATGGCTCCAGCAGATTTAAGGGAGTTAAAGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578561" ref_strand="+" ref_description="SGN-U578561 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147804664|emb|CAN66637.1| (e_value=5e-131) hypothetical; (*ATH) AT2G10090.1 (e_value=4e-31) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttgaagatctcatagtaaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="86631" stop="84003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86331" g_stop="85204" g_length="1128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1111" r_length="1111" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85134" g_stop="84303" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1942" r_length="831" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U578561" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>1960</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86331" e_stop="85204"/>
          <exon e_start="85134" e_stop="84303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACATGTTTCTTGCTGAAAATGACTATAAAAGGAAGTGAATTTTTGTTTTTTTCAAACAAAAAATTTTTTCCTGCTCTGCATAAATTTTTTCTCTCAAA-CAAATCAAAGTGTCGATCGACTGAGTCTGTGTAACTTGTTCTTGTTTTGAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTCAACAGGATTAATCCGTTTTATCTTGAAAGAAATTAATCCATAACCTCGGATACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACGTCTTGTTTTCTAT-TTACTTTTTGTTTCATCTTA-TTCTGTTTCTGTCTTTTTTAGGCTA-ACCTTATA-ATACAGGTTGAATAACAATCTTAAGAAATTTAATA-AGTTTCTGTATTTGAGGTTTTTGGAGATCAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCAGTTAACGATTAAAAAAATATAAAAACTTTAACGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCAAATACTTAAATTATCTGTCATTTGTGACAGAAAAAAGAAAAATGACTAATTTAAGTCAAGCAAATGCTGGAACAGTAAGTGCTGCAATAGTAAGTGTTGCAACAACATCGGTTGCACATAATCGTTCAAATGCTTCCTTAGCACCGTATGAGAAACCTACAAAGTTTTCTGGAGTTGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAGGTATAAATTAATTTAATGCCTATGTTAGAAATATTAAGTTTTTTCTTATACACATAATCTTTAATGTAGGATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTCGTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTATTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATAAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAATTGTGGTAAACATGGTCATAGGGCTACTGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAAAAAGGATCAAGCAAACTTGGCTAAATCCAAAGGAGAAATGGAAGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGTTATTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCATGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTAAGTTTCAATTTCAGTTCTTACCAAGAATGGATTCAAATGTGTATTTGTTTATAATAAAGTAGTAGTAAGCAAGAAAGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGGAATTGCATTTGATATGAATAAAGATTTTGCTTCTTCTT</genome_strand>
        <mrna_strand>CGGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTA-TTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGT-TTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG---AAA-AAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGC------AA------CAAC-A-AT-GGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG.....................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAG-AAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562683" ref_strand="+" ref_description="SGN-U562683 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gcaaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttaatggtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="87139" stop="88335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87438" g_stop="88035" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U562683" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87438" e_stop="88035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGGCTTGTTAAAAATGTATTGTATATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTT-AT-GTATAAGAATTGTTTATGTAATTGTTCTTTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTAATTTGT</genome_strand>
        <mrna_strand>GCAAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTAATGGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595872" ref_strand="+" ref_description="SGN-U595872 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-95) Polyprotein,; (*SWP) sp|Q7LHG5|YI31B_YEAST (e_value=9e-27) Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I; ">
      <seq>gtccgagataaggtgttgcgaggagaggctaaagaagcaaaaatcaatgaggaatgtgttttgagaattaagggaagggtatgtgtaccccgcaccgatgatttgattcacactattcttacggaggctcatagttcaaggtattctatacatcctggtgcaaccaagatgtatcgtgacctaaagcaacatttttggtggagtaggatgaagcgtgacattgttgattttgttgctcaatgcccgaattgtcagcaagtaaagtatgaacaccaaaggcctggagggacacttcagagaatgcccattcctgaatggaagtgggagagaattgaaatggacttcgtggttggtctccaaagacaatgggtaagtatgacaccatatgggtaattgttgacagattaactaagtctgctcatttcattccggtcaaagtgacttataatgcagagaagttagccaaactttacatctcagaaattgtttgattgcatggaattccactttccattatatcagatagagttacgcagtttacttctaaattttggaaaacattgcatgccgagttaggtactaggttagatcttagtactgcattttaccctcagaccgatggtcagtctgagcgaataatttangtcttggaggatatgcttcgtgcatgtgtgatagaatttagtggncattgggataacttcttacncttagcanaattctcatacnacaatagctatcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="97089" stop="95745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96045" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U595872" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAGATAAGGTATTGCTAGGAGAGGCTAAAGAAGCAAAAATCGATGAGGAAGGTTTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATAATTTGATTCACACTATTCTTGCAGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTT-GTGGAGTAGGATGAAGCGTGACATTGTTGATTTCGTTGCTCAATTCCCGAATTGTCAGCAGGTAAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTTCAATGGAATTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGACTCTATTTGGGTGATTGTTGACAGGTTAACTAAGTCTGCTCACTTCATTCCGGTTAAGGTGACTTAAAATGCAGAGAAGTTAGCCAAACTTTATATCTCAGAAATTGTTCGATTGCATGGAGTTCCACTCTCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTAGGAAAACATTGCATGCTGAATTAGGTACTAGGTTGGATCTTAGTACTGCATTTCACCATCAGACTGATGGTCAGCCTGAGCGAACGATTCAGGTTTCGGAGGATATGCTTCGTGCACGTGTGATAGAGTTTGGTTGCCATTGGGATAACTTCTTACCCTTAGCAGATTTCTCATACAACAATATCTATCACTCA</genome_strand>
        <mrna_strand>GTCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATCAATGAGGAATGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCACCGATGATTTGATTCACACTATTCTTACGGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTTGATTTTGTTGCTCAATGCCCGAATTGTCAGCAAGTAAAGTATGAACACCAAAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGAAATGGACTTCGTGGTTGGTC-TCCAAAGACAATGGGTAAGTATGACACCATATGGGTAATTGTTGACAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAAGTGACTTATAATGCAGAGAAGTTAGCCAAACTTTACATCTCAGAAATTGTTTGATTGCATGGAATTCCACTTTCCATTATATCAGATAGAGTTACGCAGTTTACTTCTAAATTTTGGAAAACATTGCATGCCGAGTTAGGTACTAGGTTAGATCTTAGTACTGCATTTTACCCTCAGACCGATGGTCAGTCTGAGCGAATAATTTANGTCTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTAGTGGNCATTGGGATAACTTCTTACNCTTAGCANAATTCTCATACNACAATAGCTATCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595870" ref_strand="+" ref_description="SGN-U595870 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=4e-63) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=4e-20) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>ctcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95920" stop="97012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96219" g_stop="96712" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U595870" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96219" e_stop="96712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATGCAATGTTTTCCTAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATATAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAACCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAATTCCATTGAAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGAATTGAGCAACGAAATCAACAATGTCACGCTTCATCCTACTCCA-CAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATAC</genome_strand>
        <mrna_strand>CTCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575265" ref_strand="+" ref_description="SGN-U575265 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-65) Polyprotein,; (*SWP) sp|P04323|POL3_DROME (e_value=2e-11) Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol; ">
      <seq>ggcctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96363" stop="97549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96662" g_stop="97249" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U575265" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96662" e_stop="97249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTG</genome_strand>
        <mrna_strand>GGCCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="99071" stop="97832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98771" g_stop="98132" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98771" e_stop="98132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGATTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCAAATTTTGCATTCTTAAATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCTAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGGCGGTTTCGTTAGTCCGTGAGTTTCTAGATATGTTTCCTGTAGACCTTCCTGGTATGTCACCTGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="98169" stop="99093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98468" g_stop="98793" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98468" e_stop="98793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATTTAAGAATGCAAAATTTGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAATCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="100335" stop="99066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100035" g_stop="99366" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100035" e_stop="99366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAACCAGGTTCTCGCTTATCTTAGCGGGTTATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCTGGGAGTACAACATGCAACTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGAAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTCTTCACTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGGTTCTACATAAGATGGGCATAGTGGAACGATTCAGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGTACAGGAACCACCCATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGTGATAGGAAGAGAGATGAGTTCCTGAGCTTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCG-TTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCTAC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577424" ref_strand="+" ref_description="SGN-U577424 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|13172242|gb|AAK14060.1|AF239177_1 (e_value=7e-32) major; (*ATH) AT5G28010.1 (e_value=2e-28)  Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Al... ; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=5e-26) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28; ">
      <seq>cnttacggccggggaaccacacacattttattagaactttgtgatatatcatatcatagaagaaaaatgagcctccatggaaagttagtttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacagttgactctgttatcttttggaacttcatccatgatggaaaagaagtggtggcaaaggagaaagtggaagaaatagatgaagaaaacaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttattttaaagggactatagtttttctttcttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91950" stop="115609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111080" g_stop="111334" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112606" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="825" r_length="572" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="826" polyA_stop="845"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U577424" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111080" e_stop="111334"/>
          <exon e_start="112030" e_stop="112606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGTAATGATTGAACCACACACTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTATAGTTTTTTTTTTCTTTTTTTA</genome_strand>
        <mrna_strand>CNTTACG-GCCG-GGGAACCACACACATTTTATTAGAACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTTAAAGGGACTATAG-TTTTTCTTTCTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590160" ref_strand="+" ref_description="SGN-U590160 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13172242|gb|AAK14060.1|AF239177_1 (e_value=7e-29) major; (*ATH) AT5G28010.1 (e_value=1e-25)  Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Al... ; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=2e-23) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28; ">
      <seq>cncacnctttttattagaactttgtgatatataatatcatagatgaaaaatgagcctccattgaaagttagtttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatttcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacagttgactctgttatcttttggaacttcattcatgatgggaaagaagtggtggcaaaggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaaagataattgaaggagatatattagagtattacaaatcattttatatcacttttcatgttgagacaaaaggtgaaaataatttagttactttaatcatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatcgaattactcctcaatgtaaccaaagatattgagaattatcacattaagtgatacataaatattatatacggggactctttgaaaatatcgataatatatgtcgaattctttaaaataatgtattttgaaaaaatcgatatgaataagataacntttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110799" stop="112705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111099" g_stop="111334" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112405" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="611" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-U590160" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111099" e_stop="111334"/>
          <exon e_start="112030" e_stop="112405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTG</genome_strand>
        <mrna_strand>CNCACNCTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGGGGACTCTTTGAAAATATCGAT-AATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACNTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562683" ref_strand="+" ref_description="SGN-U562683 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gcaaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttaatggtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="124219" stop="123023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123920" g_stop="123323" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U562683" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123920" e_stop="123323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTT-AT-GTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</genome_strand>
        <mrna_strand>GCAAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTAATGGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597665" ref_strand="+" ref_description="SGN-U597665 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggggggtaggtcgtcgccactaaatattgactaaccttgaattgccatatttacatgaaatttcaaatttatcaaagcttgaattccctgaaatttggaaacctgacctgccaactctaccaaagcctaaatttccagaattcccaaagccgagttttccgccatttcctaagtgaacttccaacatggccaaaactcgagattcttgtcatttctaagactgaattgtcaacattatcaaatcctaaaatccctcaagtgcctaaaaaaccatgagcgcgtggcatgtgaaatattctttgcctcattgaagtaacattgatcacatattttccctttgttgtgatacaatcatttcctcctctctattttgaaaggattatttatgtaattggtatgccatcaatttactaatataatgttcttgtatttctaatggcatagtacacaacatttatatactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-rklT_/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="125286" stop="124224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124980" g_stop="124524" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="467" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-U597665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124980" e_stop="124524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</genome_strand>
        <mrna_strand>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7062" PGL_stop="5746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7062" e_stop="5746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="7062" e_stop="5746" e_length="1317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7062" stop="5746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCGGAGAGAGAGAGAGAGAGAGAGAGTTGTCCCTTTTCTGCCGCATTGTATTATACATTTTAAGTGAAGCTACAGGTTTCACATATTTTCCAGAATTCAAAATTTCCATGCTCATATGTTTGATAATTGATGAAATGATGTAATCCAGAGCCAAACTCATAGCTTTGAAGATTGAGACGAGCTAGCTAAGCATGAAAAGAGTAAAGAAGGAGACAATCTCAATAATTGATTGTTTTGTCTGTTTTAGTTACTTCTAGCCTCTAGATATTTCCCATTTTTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGTTGGTGAACTTTATTAAAGAAAATTGAATCTTGCTTAACGTGTGTTTTACATTGCTTATATCCAGTTTGTTCAAGTGGGTTGTGTGATATATTTAGGTGGAAAACTTTGGATTTTCATTTCTCAAAAGGAGGTTTCTGTGATTCTTCAATGTGGAGAAGTCAGATATTGTTGTCTTGTGGTGAGCTGAAGAACGTAAAAGAGTTGCATTCAGTACCAACAGAGTTTCCACTAGATTTGGGTGTCAAGTTGTGCTAAGCTTACACAACTGAGTATATATATGTGTCTTCTAACTTGGCCCCAAGCCCCCAATTGTTATTCGTCTTCCAACTGTGTGTGTGCAGATAGGTATGTAAACTTGTATACGTTGAACATGTAACCCATTTTCTCATTGAATGAAAAGGTACGAAATAAA</gDNA_template>
            <first_frame> R  R  R  E  R  E  R  E  R  V  V  P  F  L  P  H  C  I  I  H  F  K  *  S  Y  R  F  H  I  F  S  R  I  Q  N  F  H  A  H  M  F  D  N  *  *  N  D  V  I  Q  S  Q  T  H  S  F  E  D  *  D  E  L  A  K  H  E  K  S  K  E  G  D  N  L  N  N  *  L  F  C  L  F  *  L  L  L  A  S  R  Y  F  P  F  F  L  L  L  L  *  *  D  V  V  Q  N  G  L  L  M  E  *  C  Y  F  P  Y  *  I  Y  M  V  S  S  *  N  L  T  I  Q  F  S  K  Q  I  V  F  *  M  L  V  R  H  P  S  T  L  H  G  G  I  C  T  L  E  A  N  L  K  C  I  L  H  P  *  *  A  V  V  C  H  K  *  Y  Y  V  I  V  Y  C  H  L  T  C  R  L  F  *  *  S  F  S  V  R  H  W  L  P  G  V  *  S  I  C  Y  V  A  K  *  L  C  T  S  Y  A  D  F  H  L  *  T  C  C  L  R  F  R  F  *  S  F  S  F  S  K  C  S  I  S  V  T  L  R  Q  I  H  E  G  V  F  T  L  L  K  L  A  R  T  V  F  A  I  P  S  S  V  W  L  C  R  A  S  T  L  N  M  Q  Y  K  K  E  E  I  H  I  N  L  I  I  I  Q  K  F  A  V  S  V  S  H  V  S  E  V  G  E  L  Y  *  R  K  L  N  L  A  *  R  V  F  Y  I  A  Y  I  Q  F  V  Q  V  G  C  V  I  Y  L  G  G  K  L  W  I  F  I  S  Q  K  E  V  S  V  I  L  Q  C  G  E  V  R  Y  C  C  L  V  V  S  *  R  T  *  K  S  C  I  Q  Y  Q  Q  S  F  H  *  I  W  V  S  S  C  A  K  L  T  Q  L  S  I  Y  M  C  L  L  T  W  P  Q  A  P  N  C  Y  S  S  S  N  C  V  C  A  D  R  Y  V  N  L  Y  T  L  N  M  *  P  I  F  S  L  N  E  K  V  R  N  K </first_frame>
            <second_frame>  G  G  E  R  E  R  E  R  E  L  S  L  F  C  R  I  V  L  Y  I  L  S  E  A  T  G  F  T  Y  F  P  E  F  K  I  S  M  L  I  C  L  I  I  D  E  M  M  *  S  R  A  K  L  I  A  L  K  I  E  T  S  *  L  S  M  K  R  V  K  K  E  T  I  S  I  I  D  C  F  V  C  F  S  Y  F  *  P  L  D  I  S  H  F  F  F  Y  F  Y  S  R  M  L  C  R  M  D  C  L  W  S  N  A  I  S  P  I  E  F  I  W  F  P  A  K  I  *  L  F  N  S  Q  S  R  *  Y  F  R  C  *  *  D  I  L  L  H  S  M  E  G  Y  V  P  W  R  L  I  S  N  V  F  C  T  L  N  E  L  L  F  A  T  S  N  I  T  L  *  S  I  V  T  *  P  V  G  C  F  S  K  A  F  L  Y  V  I  G  C  L  V  C  N  L  Y  V  M  *  Q  N  N  C  A  P  H  M  L  I  F  I  Y  K  L  A  A  F  V  S  G  F  S  P  S  H  L  V  S  V  P  S  L  S  L  Y  G  R  S  M  K  V  C  L  P  C  L  S  *  Q  E  L  F  L  Q  F  L  L  V  Y  G  C  A  E  L  A  H  *  T  C  N  I  R  K  R  R  Y  I  L  I  *  L  S  F  R  N  L  L  L  V  S  H  M  L  V  K  L  V  N  F  I  K  E  N  *  I  L  L  N  V  C  F  T  L  L  I  S  S  L  F  K  W  V  V  *  Y  I  *  V  E  N  F  G  F  S  F  L  K  R  R  F  L  *  F  F  N  V  E  K  S  D  I  V  V  L  W  *  A  E  E  R  K  R  V  A  F  S  T  N  R  V  S  T  R  F  G  C  Q  V  V  L  S  L  H  N  *  V  Y  I  C  V  F  *  L  G  P  K  P  P  I  V  I  R  L  P  T  V  C  V  Q  I  G  M  *  T  C  I  R  *  T  C  N  P  F  S  H  *  M  K  R  Y  E  I   </second_frame>
            <third_frame>   A  E  R  E  R  E  R  E  S  C  P  F  S  A  A  L  Y  Y  T  F  *  V  K  L  Q  V  S  H  I  F  Q  N  S  K  F  P  C  S  Y  V  *  *  L  M  K  *  C  N  P  E  P  N  S  *  L  *  R  L  R  R  A  S  *  A  *  K  E  *  R  R  R  Q  S  Q  *  L  I  V  L  S  V  L  V  T  S  S  L  *  I  F  P  I  F  S  S  T  S  I  V  G  C  C  A  E  W  I  A  Y  G  V  M  L  F  P  L  L  N  L  Y  G  F  Q  L  K  F  N  Y  S  I  L  K  A  D  S  I  L  D  A  S  K  T  S  F  Y  T  P  W  R  D  M  Y  L  G  G  *  S  Q  M  Y  F  A  P  L  M  S  C  C  L  P  Q  V  I  L  R  Y  S  L  L  S  L  D  L  *  V  V  L  V  K  L  F  C  T  S  L  V  A  W  C  V  I  Y  M  L  C  S  K  I  I  V  H  L  I  C  *  F  S  F  I  N  L  L  P  S  F  Q  V  L  V  L  L  I  *  *  V  F  H  L  C  H  F  T  A  D  P  *  R  C  V  Y  L  A  *  V  S  K  N  C  F  C  N  S  F  *  C  M  A  V  Q  S  *  H  T  K  H  A  I  *  E  R  G  D  T  Y  *  F  D  Y  H  S  E  I  C  C  *  C  L  T  C  *  *  S  W  *  T  L  L  K  K  I  E  S  C  L  T  C  V  L  H  C  L  Y  P  V  C  S  S  G  L  C  D  I  F  R  W  K  T  L  D  F  H  F  S  K  G  G  F  C  D  S  S  M  W  R  S  Q  I  L  L  S  C  G  E  L  K  N  V  K  E  L  H  S  V  P  T  E  F  P  L  D  L  G  V  K  L  C  *  A  Y  T  T  E  Y  I  Y  V  S  S  N  L  A  P  S  P  Q  L  L  F  V  F  Q  L  C  V  C  R  *  V  C  K  L  V  Y  V  E  H  V  T  H  F  L  I  E  *  K  G  T  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6151" stop="5903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLKKIESCLTCVLHCLYPVCSSGLCDIFRWKTLDFHFSKGGFCDSSMWRSQILLSCGELKNVKELHSVPTEFPLDLGVKLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6378" stop="6142"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSFSKCSISVTLRQIHEGVFTLLKLARTVFAIPSSVWLCRASTLNMQYKKEEIHINLIIIQKFAVSVSHVSEVGELY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6796" stop="6596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFPIFSSTSIVGCCAEWIAYGVMLFPLLNLYGFQLKFNYSILKADSILDASKTSFYTPWRDMYLGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8138" PGL_stop="9284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8138" e_stop="8453"/>
            <exon e_start="9093" e_stop="9284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="8138" e_stop="8453" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="9093" e_stop="9284" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="8453"/>
              <exon start="9093" stop="9284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565268" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTACTACGTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT : GTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATCCAGTCTAA</gDNA_template>
            <first_frame> I  L  L  R  I  C  E  Y  F  T  *  Q  R  C  I  R  S  S  Y  C  Y  T  S  C  K  C  D  M  L  T  *  S  *  Q  L  R  Y  I  R  S  C  D  T  L  F  S  N  T  F  I  N  F  T  K  T  *  N  *  V  I  V  Y  P  E  K  L  E  K  E  N  *  T  N  W  T  S  Q  L  D  Y  V  L  C  L  L  G  K  L  K  R  K  K  L  S  L  G  K  Y  Y  I  G  L  E  M  S   : C  F  F  P  R  H  M  I  D  *  P  P  Y  V  T  Q  I  *  S  S  T  I  F  C  T  L  M  I  L  I  S  F  E  G  K  V  G  T  F  P  D  V  T  Q  A  P  T  I  L  R  N  Y  R  R  G  R  V  S  R  A  K  S  S  L  </first_frame>
            <second_frame>  Y  Y  Y  V  Y  V  N  I  L  L  N  K  D  A  S  D  L  H  I  V  T  H  L  V  N  V  T  C  L  L  E  V  N  N  L  G  I  S  G  A  V  I  H  Y  S  A  T  H  L  *  I  L  L  K  H  E  I  K  *  L  F  I  R  K  S  L  K  R  K  I  E  Q  I  G  H  H  S  L  T  M  F  Y  V  Y  L  V  S  *  K  E  K  N  C  H  L  E  S  I  I  L  A  *  K  C  H  :  V  F  F  P  D  I  *  L  T  N  L  L  M  L  H  K  S  D  Q  V  P  Y  F  V  L  *  *  Y  *  Y  L  L  K  A  K  L  G  L  F  L  M  *  H  K  L  Q  Q  S  S  G  T  I  G  G  G  E  S  Q  G  L  N  P  V  * </second_frame>
            <third_frame>   T  T  T  Y  M  *  I  F  Y  L  T  K  M  H  Q  I  F  I  L  L  H  I  L  *  M  *  H  A  Y  L  K  L  T  T  *  V  Y  Q  E  L  *  Y  I  I  Q  Q  H  I  Y  K  F  Y  *  N  M  K  L  S  N  C  L  S  G  K  A  *  K  G  K  L  N  K  L  D  I  T  A  *  L  C  F  M  F  T  W  *  V  E  K  K  K  I  V  T  W  K  V  L  Y  W  L  R  N  V  M :   F  F  S  Q  T  Y  D  *  L  T  S  L  C  Y  T  N  L  I  K  Y  H  I  L  Y  S  D  D  I  N  I  F  *  R  Q  S  W  D  F  S  *  C  D  T  S  S  N  N  P  Q  E  L  S  E  G  E  S  L  K  G  *  I  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11245" PGL_stop="10747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11245" e_stop="10747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="11245" e_stop="10747" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11245" stop="10747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAGGTGGAAGTGAGAACAAAGGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTTCTTTGTGTGTTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGTACCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</gDNA_template>
            <first_frame> *  I  T  W  I  N  I  *  Y  F  Y  Y  K  G  *  A  I  Y  D  L  P  E  F  V  R  M  D  Y  L  I  V  *  C  F  V  L  V  V  E  L  C  T  D  I  P  F  T  P  M  I  H  S  P  W  T  R  *  L  L  Q  L  N  L  G  N  N  V  S  I  Y  T  *  *  H  *  S  L  L  V  F  S  W  S  E  I  M  D  K  T  C  A  P  K  D  M  R  W  K  *  E  Q  R  *  F  E  *  T  K  R  S  K  V  M  T  T  V  L  C  V  F  Y  C  L  K  I  C  A  C  I  W  *  S  M  L  M  I  C  S  S  Y  I  M  M  K  R  K  S  T  N  L  K  N  N  H  F  R  P  R  T  *  M  Y  *  Y  T  S  </first_frame>
            <second_frame>  R  *  R  G  S  I  Y  D  I  S  I  I  K  V  R  Q  Y  M  I  F  L  S  L  L  G  W  I  T  *  L  S  D  V  L  C  *  L  L  N  Y  V  P  T  S  L  L  H  P  *  F  T  H  H  G  R  A  S  F  Y  N  *  I  L  G  I  M  *  V  Y  T  L  N  S  T  R  A  Y  L  F  F  H  G  A  K  L  W  T  K  H  V  L  P  K  T  *  G  G  S  E  N  K  G  D  L  S  K  Q  K  G  V  R  *  *  L  L  F  F  V  C  S  I  A  S  R  F  V  H  V  F  G  D  L  C  *  *  Y  A  H  H  I  *  *  *  K  E  K  V  P  T  *  R  I  T  I  S  D  Q  E  P  R  C  I  D  I  L  L </second_frame>
            <third_frame>   D  N  V  D  Q  Y  M  I  F  L  L  *  R  L  G  N  I  *  S  S  *  V  C  *  D  G  L  L  D  C  L  M  F  C  V  S  C  *  I  M  Y  R  H  P  F  Y  T  H  D  S  L  T  M  D  A  L  A  F  T  I  E  S  W  E  *  C  K  Y  I  H  L  I  A  L  E  L  T  C  F  F  M  E  R  N  Y  G  Q  N  M  C  S  Q  R  H  E  V  E  V  R  T  K  V  I  *  V  N  K  K  E  *  G  N  D  Y  C  S  L  C  V  L  L  P  Q  D  L  C  M  Y  L  V  I  Y  V  D  D  M  L  I  I  Y  N  D  E  K  K  K  Y  Q  L  E  E  *  P  F  Q  T  K  N  L  D  V  L  I  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25942" PGL_stop="26575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26250"/>
            <exon e_start="26362" e_stop="26575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.906"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="25942" e_stop="26250" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26251" i_stop="26361" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="26362" e_stop="26575" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25942" stop="26250"/>
              <exon start="26362" stop="26575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCTCCTCGTGTCGGTACGTGTCACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCAATCCTCATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTG : GTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGATCGTGACACTCCGATCCTCATATACTATCCTAGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGGTTT</gDNA_template>
            <first_frame> N  I  Y  *  A  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  W  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  P  R  V  G  T  C  H  S  A  P  Q  Y  T  I  L  V  S  E  R  D  T  P  I  L  I  L  S  W  C  R  N  V  T  P  D  P  Y  S  I  L  :  V  S  E  R  D  T  R  S  I  F  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  C  R  I  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R  V  </first_frame>
            <second_frame>  I  Y  I  K  Q  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  V  T  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  R  L  L  I  I  L  I  W  E  F  G  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  L  L  V  S  V  R  V  T  P  L  L  N  I  L  S  W  C  R  N  V  T  L  Q  S  S  F  Y  P  G  V  G  T  *  H  P  I  H  I  L  S  W :   C  Q  N  V  T  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  Y  Y  P  G  V  G  S  *  H  S  D  P  H  I  L  S  *  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  S  R  L  G  F </second_frame>
            <third_frame>   Y  I  L  S  N  I  I  K  S  T  N  I  L  S  M  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  T  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  L  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  S  S  C  R  Y  V  S  L  R  S  S  I  Y  Y  P  G  V  G  T  *  H  S  N  P  H  S  I  L  V  S  E  R  D  T  R  S  I  F  Y  P   : G  V  R  T  *  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  T  I  L  V  S  D  R  D  T  P  I  L  I  Y  Y  P  S  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  V  D  *  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26041" stop="26250"/>
                    <exon start="26362" stop="26565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTPPHHTHLGIWFIRLNILTSFKIHYLYSPRVGTCHSAPQYTILVSERDTPILILSWCRNVTPDPYSILVSERDTRSIFYPGTGTWHPIHILSWCRIVTLRSSYTILVPERGTRSPNLTTFVHQAFFYTKASSLTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28026" PGL_stop="28202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28026" e_stop="28202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="28026" e_stop="28202" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  S  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  *  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  I  V  P  Q  M  G  P  Y  Q  C  L  S  D  S  Y  C  C  R  R  T  L  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  *  C  L  K  W  G  H  I  N  A  *  V  I  A  I  V  V  G  E  L  C  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28241" PGL_stop="28733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28241" e_stop="28733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="28241" e_stop="28733" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28241" stop="28733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGGATGCAATGTTTTCCAAAACATAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCGATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTAAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  H  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  P  N  N  F  *  D  I  D  L  G  *  L  L  G  I  V  S  H  L  N  R  N  K  M  S  R  L  S  *  P  I  N  N  H  P  N  R  V  V  L  T  H  R  L  W  K  T  N  H  E  V  H  C  N  S  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  D  K  I  H  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  G  C  N  V  F  Q  N  I  E  V  N  Y  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  K  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  D  A  M  F  S  K  T  *  K  *  T  T  Y  L  Y  L  I  *  W  R  V  E  P  H  A  T  E  Q  F  L  R  Y  R  S  W  L  T  S  R  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  *  S  R  T  Y  P  S  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  I  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  S  G  V  H  T  L  L  V  D  S  L  D  I  W  R  *  N  P  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28415" stop="28639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNRVVLTHRLWKTNHEVHCNSLPFPFRNGHSLKCSSGPLVFILYLLTVWTFGDKIHNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29506" PGL_stop="30317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29506" e_stop="30317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="29506" e_stop="30317" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29506" stop="30317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  S  S  *  L  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  *  I  W  L  K  N  T  V  H  Q  A  H  Q  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  C  C  P  Y  F  Q  L  I  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  E  C  T  W  S  T  E  A  F  A  Q  Q  L  L  K  L  V  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  *  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I   </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  V  A  S  Y  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  L  F  I  K  L  I  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  Q  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  N  A  L  G  L  L  K  P  L  L  N  N  S  *  S  W  S  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  R  R  G  L  N  M  A  *  K  Y  C  S  S  S  S  S  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  L  L  P  V  F  S  I  D  N  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  G  M  H  L  V  Y  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  L  I  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29702" stop="29899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKILFIKLINAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29815" stop="30009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLKNTVHQAHQRSRGIRKTKRHHYKFVMPIPRSKSSLWHICCPYFQLIITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29507" stop="29701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLDKSAVVASYPTKLLISDTLVGLTQFFTVSILEGSTITPSLETTCPKKDTASSQNSHLENLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32213" PGL_stop="29634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32213" e_stop="30024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="32213" e_stop="30024" e_length="2190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32213" stop="30024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32213" stop="30790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32195" stop="31445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32149" stop="31595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGCTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATATCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCCTCCTCATTTGCTAGTGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</gDNA_template>
            <first_frame> K  S  N  G  K  R  P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  I  *  S  R  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  Q  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  A  W  A  S  F  S  S  L  F  L  E  K  Y  I  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  H  L  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S  *  *  R  *  R  E  *  S  Q  M  T  S  P  W  Q  L  H  Q  K  G  F  E  R  E  V  I  L  I  V  L  T  L  E  D  K  V  P  E  V  T  Q  S  D  Q  F  S  L  H  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  D  L  C  M  N  P  E  S  A  M  D  V  G  R  L  D  I  L  R  D  I  V  Q  N  R  V  I  D  L  *  T  L  E  V  E  V  V  M  V  E  A  V  I  L  E  Y  V  V  V  E  V  M  V  V  T  R  T  A  E  V  M  G  N  L  *  P  L  H  H  N  M  V  G  A  T  D  R  R  V  R  G  P  I  A  T  L  S  L  G  D  Q  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  H  F  L  M  Y  P  P  H  L  L  V  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  T  Y  P  R  L  S  W  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  Q  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  T  N  F  K  S  C  *  A  K  A  S  V  D  Q  V  H  S  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M </first_frame>
            <second_frame>  R  A  T  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  K  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  V  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  L  G  P  H  S  L  V  C  F  W  R  S  I  S  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  T  F  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L  R  N  R  G  R  G  S  E  A  R  *  L  H  H  G  N  Y  I  K  K  V  S  K  G  R  *  F  *  L  F  L  L  *  R  T  R  F  R  R  L  L  S  P  T  N  S  V  F  T  T  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  *  T  Q  R  V  L  W  M  W  G  D  W  T  Y  *  E  I  L  S  K  I  E  L  *  T  S  K  R  *  R  *  R  *  S  W  *  R  P  L  F  W  S  T  W  W  S  R  *  W  W  S  P  E  R  P  R  *  W  A  T  C  S  H  Y  I  T  T  W  *  G  Q  R  T  D  G  *  E  G  P  L  L  R  F  P  W  E  I  R  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  I  F  L  C  I  L  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  E  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  R  T  L  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  R  P  T  S  R  V  V  E  Q  R  L  Q  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *   </second_frame>
            <third_frame>   E  Q  R  Q  E  A  V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  Y  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  S  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  S  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  C  L  G  L  I  L  *  F  V  F  G  E  V  Y  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  P  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  M  A  T  T  S  K  R  F  R  K  G  G  D  F  N  C  S  Y  S  R  G  Q  G  S  G  G  Y  S  V  R  P  I  Q  S  S  L  Q  T  V  V  G  G  P  P  P  T  G  Q  H  F  S  E  R  P  M  H  E  P  R  E  C  Y  G  C  G  E  I  G  H  I  K  R  Y  C  P  K  *  S  Y  R  P  L  N  V  R  G  R  G  S  H  G  R  G  R  Y  S  G  V  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  D  G  Q  P  V  A  T  T  S  Q  H  G  R  G  N  G  Q  T  G  E  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  S  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  H  V  P  S  I  E  L  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  D  Q  L  Q  E  L  L  S  K  G  F  S  R  P  S  A  F  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31065" stop="30025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYRPLNVRGRGSHGRGRYSGVRGGRGNGGHQNGRGDGQPVATTSQHGRGNGQTGERAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFASGLNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGYLAFLAHLKDDTTHVPSIELVSVVREFLDVFPADLPGMPPDRDIDFCIDLESGTRPISIPPYRMAPAELRELKDQLQELLSKGFSRPSAFPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32212" stop="31550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RATARGRGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGKFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNVKMWWRSHIECQPTEAPPMLGPHSLVCFWRSISPDFEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32195" e_stop="31336"/>
            <exon e_start="30591" e_stop="30077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="32195" e_stop="31336" e_length="860"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31335" i_stop="30592" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="30591" e_stop="30077" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32195" stop="31445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32149" stop="31595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31550" stop="31336"/>
              <exon start="30591" stop="30077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGCTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATATCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  I  *  S  R  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  Q  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  A  W  A  S  F  S  S  L  F  L  E  K  Y  I  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  H  L  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  T  Y  P  R  L  S  W  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  Q  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  T  N  F  K  S  C  *  A  K  A  S  V  D  Q  V  H  S  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  K  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  V  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  L  G  P  H  S  L  V  C  F  W  R  S  I  S  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  T  F  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  R  T  L  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  R  P  T  S  R  V  V  E  Q  R  L  Q  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  Y  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  S  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  S  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  C  L  G  L  I  L  *  F  V  F  G  E  V  Y  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  P  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  H  V  P  S  I  E  L  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  D  Q  L  Q  E  L  L  S  K  G  F  S  R  P  S  A  F  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31590" stop="31336"/>
                    <exon start="30591" stop="30079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFGEVYPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISPLQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGYLAFLAHLKDDTTHVPSIELVSVVREFLDVFPADLPGMPPDRDIDFCIDLESGTRPISIPPYRMAPAELRELKDQLQELLSKGFSRPSAFPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32195" e_stop="31313"/>
            <exon e_start="30197" e_stop="29634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="32195" e_stop="31313" e_length="883"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31312" i_stop="30198" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="30197" e_stop="29634" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32195" stop="31445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32183" stop="31313"/>
              <exon start="30197" stop="29634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32149" stop="31595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGCTTGGGCCTCATTCTCTAGTTTGTTTTTGGAGAAGTATATCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAA : AAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCTGTTATTATCAATTGAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTGATGAGCTTGATGAACAGTATTTTTAAGCCATATTTAGACCTCTTCGTGATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  I  *  S  R  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  Q  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  A  W  A  S  F  S  S  L  F  L  E  K  Y  I  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  H  L  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S  *  *  R  *  R  E  *   : K  D  Q  L  Q  E  L  L  S  K  G  F  S  R  P  S  A  F  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  C  Y  Y  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  L  M  S  L  M  N  S  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  K  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  V  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  L  G  P  H  S  L  V  C  F  W  R  S  I  S  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  T  F  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L  R  N  R  G  R  G  S  E  :  K  T  N  F  K  S  C  *  A  K  A  S  V  D  Q  V  H  S  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  Q  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  *  *  A  *  *  T  V  F  L  S  H  I  *  T  S  S  *  S  Y  L  L  M  I  Y  *  Y  T  Q  R  A  R  K  N  M  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  Y  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  S  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  S  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  C  L  G  L  I  L  *  F  V  F  G  E  V  Y  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  P  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   R  P  T  S  R  V  V  E  Q  R  L  Q  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  L  L  L  S  I  E  N  T  G  N  R  C  A  K  D  C  F  S  N  E  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  D  E  L  D  E  Q  Y  F  *  A  I  F  R  P  L  R  D  R  I  Y  *  *  Y  T  D  I  L  K  E  Q  E  R  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32194" stop="31550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGKFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNVKMWWRSHIECQPTEAPPMLGPHSLVCFWRSISPDFEG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31313" stop="29635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDQLQELLSKGFSRPSAFPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGACVFSKIDLRSCYYQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNAPAALMSLMNSIFKPYLDLFVIVFIDDILIYSKSKKEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31486" stop="31313"/>
                    <exon start="30197" stop="30174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSCTIPVCHPTMFQSTRADSPFCEGVEIRVADFTFTGSGYSEIFSRSGRLRNRGRGSEKTNFKSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="30321" PGL_stop="32213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30321" e_stop="32213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="30321" e_stop="32213" e_length="1893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30321" stop="30814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30708" stop="32213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCTGATCTCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTACTCCAGAATAACGGCCTCTACCATGACTACCTCTACCTCTAACGTTTAGAGGTCTATAACTCTATTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACAATTAAAATCACCTCCCTTTCGAAACCTTTTTGATGTAGTTGCCATGGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAAGGTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGATATACTTCTCCAAAAACAAACTAGAGAATGAGGCCCAAGCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</gDNA_template>
            <first_frame> G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  R  V  R  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  R  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  L  I  S  Q  G  K  R  S  N  G  P  S  H  P  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  V  A  H  H  L  G  R  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  Y  L  Y  L  *  R  L  E  V  Y  N  S  I  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  R  N  L  V  L  *  S  K  N  N  *  N  H  L  P  F  E  T  F  L  M  *  L  P  W  *  S  H  L  A  S  L  P  L  P  L  L  R  S  L  P  L  L  E  K  I  S  L  *  P  L  P  V  K  V  K  S  A  T  L  I  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  I  V  G  W  H  T  G  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  D  I  L  L  Q  K  Q  T  R  E  *  G  P  S  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  T  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  L  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L </first_frame>
            <second_frame>  E  H  I  Q  K  L  T  D  H  R  N  Q  L  N  R  G  Y  V  G  S  V  I  L  E  M  C  Q  E  S  *  I  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  T  S  K  *  G  G  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  *  S  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  T  M  L  *  C  S  G  Y  R  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  Y  S  R  I  T  A  S  T  M  T  T  S  T  S  N  V  *  R  S  I  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  I  T  S  L  S  K  P  F  *  C  S  C  H  G  E  V  I  W  L  H  S  L  Y  L  Y  Y  E  V  Y  H  F  L  K  R  F  R  C  S  R  Y  L  *  R  *  N  P  Q  L  *  S  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  I  Y  F  S  K  N  K  L  E  N  E  A  Q  A  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  *  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  I  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L   </second_frame>
            <third_frame>   N  T  S  R  N  S  R  T  T  E  T  N  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Y  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  T  G  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  T  P  E  *  R  P  L  P  *  L  P  L  P  L  T  F  R  G  L  *  L  Y  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  Q  L  K  S  P  P  F  R  N  L  F  D  V  V  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  G  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  Y  T  S  P  K  T  N  *  R  M  R  P  K  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  D  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  L  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31355" stop="31594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKGEIRNSDLNPFTKRRIRSCGLKHSWVAYRDSARNLASYALTDILPCSRLKNSSLFLSLKVRGYTSPKTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31991" stop="32212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTEIGENLIDHLWGRLGWQSLILHLFIFPILPFSYYLLSRWRSHCPSIRWTRCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32016" stop="32213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="33013" PGL_stop="33646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33013" e_stop="33233"/>
            <exon e_start="33346" e_stop="33646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="33013" e_stop="33233" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33234" i_stop="33345" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="33346" e_stop="33646" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33013" stop="33233"/>
              <exon start="33346" stop="33646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCA : ATATACTATCTTGGTGTCGAAACGTGACACCCAATCCATATTCTTTCCTGATACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATACTGGTACCGAAACGTGGCACTCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAATAGATTAGGGTTT</gDNA_template>
            <first_frame> S  I  Y  *  A  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  W  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  P  R  V  G  T  *  H  S  A  P  Q :   Y  T  I  L  V  S  K  R  D  T  Q  S  I  F  F  P  D  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  T  P  D  P  Y  S  I  L  V  P  K  R  G  T  R  S  I  Y  Y  P  G  V  G  T  *  H  S  D  P  H  I  L  S  W  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  N  R  L  G  F </first_frame>
            <second_frame>  V  Y  I  K  Q  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  V  T  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  R  L  L  I  I  L  I  W  E  F  G  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  P  L  V  S  V  R  D  T  P  L  L   : N  I  L  S  W  C  R  N  V  T  P  N  P  Y  S  F  L  I  P  E  R  G  T  R  S  I  F  Y  P  G  V  G  T  *  H  P  I  H  I  L  Y  W  Y  R  N  V  A  L  D  P  Y  T  I  L  V  S  E  R  D  T  P  I  L  I  Y  Y  P  G  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  I  D  *  G   </second_frame>
            <third_frame>   Y  I  L  S  N  I  I  K  S  T  N  I  L  S  M  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  T  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  L  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  P  S  C  R  Y  V  T  L  R  S  S  :  I  Y  Y  L  G  V  E  T  *  H  P  I  H  I  L  S  *  Y  R  N  V  A  P  D  P  Y  S  I  L  V  S  E  R  D  T  R  S  I  F  Y  T  G  T  E  T  W  H  S  I  H  I  L  S  W  C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33397" stop="33636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRNVAPDPYSILVSERDTRSIFYTGTETWHSIHILSWCRNVTLRSSYTILVPERGTRSPNLTTFVHQAFFYTKASSLTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="42629" PGL_stop="43657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42629" e_stop="43657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="42629" e_stop="43657" e_length="1029"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42629" stop="43657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATATACAAATATGAAGTTTTTACCGGAATTGACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAATTTCTCTTTTTTCTTTTTCTTTTTCTTTTCACTGTTTCATGACTTTTTTTTTAACCAAACTATTGCTCACATGATATTTTCCAATGTTTTGGGCCAAATTATTAGTTTTACTATCGATATTTCTAGACTAAATTATTAATCGGAGAATTTTTATTTAATCTGTAATTCAAAAATTATTTTTATTCCTTTTTAGTTGTTTTTATTATTATTTTACTTTGGAGAGGATAATTTATTTTTTTTTGGTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGCATTTGTGTTCGTAAATAATTAGATTTTTTGTTCACCCCTAAATGGAAATTTAAAAAAAAGCAAAAATATATGTTTTTTTTTAAATTTCCTTTATGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAATCTTTTTTTTTTTTGTACATAGATAAAATTTGGTAAAGGTCATCTTTTTTCTTCCTTT</gDNA_template>
            <first_frame> E  K  T  Y  P  N  P  K  S  K  *  N  P  K  A  M  S  P  *  I  L  I  Q  F  T  F  I  P  Y  F  I  Y  L  Y  I  P  F  I  I  P  H  F  F  E  N  H  N  C  I  D  K  *  I  S  F  I  Y  T  N  M  K  F  L  P  E  L  T  C  C  G  G  E  T  I  K  T  A  R  D  G  L  P  P  V  E  K  K  E  S  A  L  V  N  R  S  G  S  K  R  A  V  S  R  G  R  K  L  R  K  M  E  D  W  K  P  A  L  N  V  I  S  E  D  N  A  I  A  D  I  D  R  Y  S  Y  D  Q  N  T  V  G  N  S  G  N  E  R  A  G  K  S  G  R  A  Q  K  K  F  G  D  G  Y  W  *  L  I  S  L  F  S  F  S  F  S  F  H  C  F  M  T  F  F  L  T  K  L  L  L  T  *  Y  F  P  M  F  W  A  K  L  L  V  L  L  S  I  F  L  D  *  I  I  N  R  R  I  F  I  *  S  V  I  Q  K  L  F  L  F  L  F  S  C  F  Y  Y  Y  F  T  L  E  R  I  I  Y  F  F  L  V  Y  M  Q  E  N  V  V  R  R  C  D  A  C  F  L  R  N  A  F  L  V  W  S  C  I  C  V  R  K  *  L  D  F  L  F  T  P  K  W  K  F  K  K  K  Q  K  Y  M  F  F  F  K  F  P  L  *  F  L  L  *  L  I  C  G  F  *  I  I  L  I  L  Y  Y  I  L  V  I  N  L  F  F  F  C  T  *  I  K  F  G  K  G  H  L  F  S  S  F </first_frame>
            <second_frame>  K  K  H  I  Q  I  Q  N  Q  N  K  I  Q  K  Q  C  H  H  E  F  L  S  N  S  P  L  S  H  I  L  F  T  Y  I  Y  P  L  *  Y  L  T  F  S  K  I  T  T  V  *  I  N  K  Y  P  L  Y  I  Q  I  *  S  F  Y  R  N  *  R  V  V  A  A  K  P  S  R  R  R  G  M  G  Y  L  R  W  R  K  R  S  R  R  *  *  I  D  R  E  V  N  A  R  F  L  G  E  G  N  *  G  K  W  R  I  G  N  R  R  S  T  S  S  P  R  I  T  R  S  P  T  S  I  G  T  V  T  I  K  I  R  L  E  I  P  G  M  K  E  P  G  N  L  V  E  H  R  R  S  S  A  T  V  T  G  N  *  F  L  F  F  L  F  L  F  L  F  T  V  S  *  L  F  F  *  P  N  Y  C  S  H  D  I  F  Q  C  F  G  P  N  Y  *  F  Y  Y  R  Y  F  *  T  K  L  L  I  G  E  F  L  F  N  L  *  F  K  N  Y  F  Y  S  F  L  V  V  F  I  I  I  L  L  W  R  G  *  F  I  F  F  W  Y  I  C  R  K  M  S  Y  A  V  A  M  P  A  F  S  G  M  H  F  *  C  G  V  A  F  V  F  V  N  N  *  I  F  C  S  P  L  N  G  N  L  K  K  S  K  N  I  C  F  F  L  N  F  L  Y  D  F  Y  F  S  *  Y  V  V  F  E  L  F  *  F  Y  I  I  S  L  *  *  I  F  F  F  F  V  H  R  *  N  L  V  K  V  I  F  F  L  P   </second_frame>
            <third_frame>   K  N  I  S  K  S  K  I  K  I  K  S  K  S  N  V  T  M  N  S  Y  P  I  H  L  Y  P  I  F  Y  L  P  I  Y  T  L  Y  N  T  S  L  F  R  K  S  Q  L  Y  R  *  I  N  I  L  Y  I  Y  K  Y  E  V  F  T  G  I  D  V  L  W  R  R  N  H  Q  D  G  E  G  W  A  T  S  G  G  E  K  G  V  G  A  S  K  S  I  G  K  *  T  R  G  F  S  G  K  E  I  E  E  N  G  G  L  E  T  G  A  Q  R  H  L  R  G  *  R  D  R  R  H  R  S  V  Q  L  R  S  K  Y  G  W  K  F  R  E  *  K  S  R  E  I  W  *  S  T  E  E  V  R  R  R  L  L  V  T  N  F  S  F  F  F  F  F  F  F  S  L  F  H  D  F  F  F  N  Q  T  I  A  H  M  I  F  S  N  V  L  G  Q  I  I  S  F  T  I  D  I  S  R  L  N  Y  *  S  E  N  F  Y  L  I  C  N  S  K  I  I  F  I  P  F  *  L  F  L  L  L  F  Y  F  G  E  D  N  L  F  F  F  G  I  Y  A  G  K  C  R  T  P  L  R  C  L  L  S  Q  E  C  I  F  S  V  E  L  H  L  C  S  *  I  I  R  F  F  V  H  P  *  M  E  I  *  K  K  A  K  I  Y  V  F  F  *  I  S  F  M  I  S  T  L  V  D  M  W  F  L  N  Y  F  N  F  I  L  Y  P  C  D  K  S  F  F  F  L  Y  I  D  K  I  W  *  R  S  S  F  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42785" stop="43117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFIYTNMKFLPELTCCGGETIKTARDGLPPVEKKESALVNRSGSKRAVSRGRKLRKMEDWKPALNVISEDNAIADIDRYSYDQNTVGNSGNERAGKSGRAQKKFGDGYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42763" e_stop="43113"/>
            <exon e_start="43376" e_stop="43657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="42763" e_stop="43113" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43114" i_stop="43375" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43376" e_stop="43657" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="43113"/>
              <exon start="43376" stop="43657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAACTGTATAGATAAATAAATATCCTTTATATATACAAATATGAAGTTTTTACCGGAATTGACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTG : GAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTTAGTGTGGAGTTGCATTTGTGTTCGTAAATAATTAGATTTTTTGTTCACCCCTAAATGGAAATTTAAAAAAAAGCAAAAATATATGTTTTTTTTTAAATTTCCTTTATGATTTCTACTTTAGTTGATATGTGGTTTTTGAATTATTTTAATTTTATATTATATCCTTGTGATAAATCTTTTTTTTTTTTGTACATAGATAAAATTTGGTAAAGGTCATCTTTTTTCTTCCTTT</gDNA_template>
            <first_frame> S  Q  L  Y  R  *  I  N  I  L  Y  I  Y  K  Y  E  V  F  T  G  I  D  V  L  W  R  R  N  H  Q  D  G  E  G  W  A  T  S  G  G  E  K  G  V  G  A  S  K  S  I  G  K  *  T  R  G  F  S  G  K  E  I  E  E  N  G  G  L  E  T  G  A  Q  R  H  L  R  G  *  R  D  R  R  H  R  S  V  Q  L  R  S  K  Y  G  W  K  F  R  E  *  K  S  R  E  I  W  *  S  T  E  E  V  R  R  R  L  L  :  E  N  V  V  R  R  C  D  A  C  F  L  R  N  A  F  L  V  W  S  C  I  C  V  R  K  *  L  D  F  L  F  T  P  K  W  K  F  K  K  K  Q  K  Y  M  F  F  F  K  F  P  L  *  F  L  L  *  L  I  C  G  F  *  I  I  L  I  L  Y  Y  I  L  V  I  N  L  F  F  F  C  T  *  I  K  F  G  K  G  H  L  F  S  S  F </first_frame>
            <second_frame>  H  N  C  I  D  K  *  I  S  F  I  Y  T  N  M  K  F  L  P  E  L  T  C  C  G  G  E  T  I  K  T  A  R  D  G  L  P  P  V  E  K  K  E  S  A  L  V  N  R  S  G  S  K  R  A  V  S  R  G  R  K  L  R  K  M  E  D  W  K  P  A  L  N  V  I  S  E  D  N  A  I  A  D  I  D  R  Y  S  Y  D  Q  N  T  V  G  N  S  G  N  E  R  A  G  K  S  G  R  A  Q  K  K  F  G  D  G  Y  W :   K  M  S  Y  A  V  A  M  P  A  F  S  G  M  H  F  *  C  G  V  A  F  V  F  V  N  N  *  I  F  C  S  P  L  N  G  N  L  K  K  S  K  N  I  C  F  F  L  N  F  L  Y  D  F  Y  F  S  *  Y  V  V  F  E  L  F  *  F  Y  I  I  S  L  *  *  I  F  F  F  F  V  H  R  *  N  L  V  K  V  I  F  F  L  P   </second_frame>
            <third_frame>   T  T  V  *  I  N  K  Y  P  L  Y  I  Q  I  *  S  F  Y  R  N  *  R  V  V  A  A  K  P  S  R  R  R  G  M  G  Y  L  R  W  R  K  R  S  R  R  *  *  I  D  R  E  V  N  A  R  F  L  G  E  G  N  *  G  K  W  R  I  G  N  R  R  S  T  S  S  P  R  I  T  R  S  P  T  S  I  G  T  V  T  I  K  I  R  L  E  I  P  G  M  K  E  P  G  N  L  V  E  H  R  R  S  S  A  T  V  T   : G  K  C  R  T  P  L  R  C  L  L  S  Q  E  C  I  F  S  V  E  L  H  L  C  S  *  I  I  R  F  F  V  H  P  *  M  E  I  *  K  K  A  K  I  Y  V  F  F  *  I  S  F  M  I  S  T  L  V  D  M  W  F  L  N  Y  F  N  F  I  L  Y  P  C  D  K  S  F  F  F  L  Y  I  D  K  I  W  *  R  S  S  F  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42785" stop="43113"/>
                    <exon start="43376" stop="43427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFIYTNMKFLPELTCCGGETIKTARDGLPPVEKKESALVNRSGSKRAVSRGRKLRKMEDWKPALNVISEDNAIADIDRYSYDQNTVGNSGNERAGKSGRAQKKFGDGYWKMSYAVAMPAFSGMHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64893" PGL_stop="64055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64893" e_stop="64055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="64893" e_stop="64055" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64893" stop="64055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTCCCGATAAGGCAAGGCAGAATGGAATTGTTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTATGGGTTGCCCAAAACACTTTGGGCAGATGCTATGAGCACAGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTTAGGACTTTTGGGTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGCTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTGAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTGTTAAGGAGATCATCCAAATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTGATGAGGCCCTACAGGTGGAGGATTCGATCAAGTGGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAATGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATAGCAAAAAAAGGTTCAAGGCTC</gDNA_template>
            <first_frame> S  S  R  *  G  K  A  E  W  N  C  *  E  D  E  Q  N  I  E  *  A  C  K  E  Y  E  D  T  L  W  V  A  Q  N  T  L  G  R  C  Y  E  H  S  C  I  L  D  Q  Q  G  T  I  S  S  F  R  V  Q  D  S  R  G  G  V  D  R  K  R  T  Q  V  L  T  L  *  D  F  W  V  H  C  L  C  S  C  *  S  R  K  E  R  Q  A  *  C  Q  G  C  E  V  L  L  H  R  I  W  F  *  F  V  W  L  Q  V  L  G  *  Q  E  Q  K  D  P  E  T  L  *  R  D  I  *  *  V  C  P  V  Q  G  Q  R  A  E  G  S  R  D  Y  K  A  S  G  S  *  G  *  V  G  E  E  *  P  Q  R  C  R  S  R  Y  S  T  N  S  Y  *  R  I  *  S  G  A  S  Y  T  *  A  G  V  K  E  I  I  Q  I  H  Q  G  T  R  *  V  F  T  F  I  T  L  S  I  A  D  *  *  G  G  T  R  V  F  *  *  G  P  T  G  G  G  F  D  Q  V  G  A  S  H  G  *  *  D  E  V  T  *  E  E  *  H  M  G  V  D  *  V  T  C  R  E  E  S  F  A  E  Q  V  G  V  Q  N  Q  D  *  T  R  *  Q  K  K  V  Q  G   </first_frame>
            <second_frame>  V  P  D  K  A  R  Q  N  G  I  V  E  R  M  N  R  T  L  N  E  R  A  R  S  M  R  I  H  Y  G  L  P  K  T  L  W  A  D  A  M  S  T  A  A  Y  L  I  N  R  G  P  S  V  P  L  G  F  K  I  P  E  E  V  W  T  G  K  E  L  K  Y  S  H  F  R  T  F  G  C  T  A  Y  V  H  V  D  P  E  K  R  D  K  L  D  A  K  A  V  K  C  Y  F  I  G  Y  G  S  D  L  F  G  Y  R  F  W  D  D  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  V  L  Y  K  D  R  E  Q  K  V  L  E  I  T  K  Q  V  G  V  E  A  E  L  E  K  S  N  P  R  D  V  E  A  D  T  Q  P  T  P  T  E  E  S  E  V  E  Q  V  T  P  E  Q  V  L  R  R  S  S  K  S  I  R  A  P  D  R  Y  S  P  S  L  H  Y  L  L  L  T  D  E  G  E  P  E  S  F  D  E  A  L  Q  V  E  D  S  I  K  W  E  Q  A  M  D  D  E  M  R  S  L  E  K  N  D  T  W  V  L  T  E  L  P  A  G  K  R  A  L  L  N  K  W  V  F  R  I  K  T  E  P  D  S  K  K  R  F  K  A  </second_frame>
            <third_frame>   F  P  I  R  Q  G  R  M  E  L  L  R  G  *  T  E  H  *  M  S  V  Q  G  V  *  G  Y  T  M  G  C  P  K  H  F  G  Q  M  L  *  A  Q  L  H  T  *  S  T  G  D  H  Q  F  L  *  G  S  R  F  Q  R  R  C  G  Q  E  K  N  S  S  T  H  T  L  G  L  L  G  A  L  L  M  F  M  L  I  Q  K  R  E  T  S  L  M  P  R  L  *  S  V  T  S  *  D  M  V  L  I  C  L  V  T  G  F  G  M  T  R  T  E  R  S  *  D  I  V  T  *  H  L  M  S  L  S  C  T  R  T  E  S  R  R  F  *  R  L  Q  S  K  W  E  L  R  L  S  W  R  R  V  T  P  E  M  S  K  Q  I  L  N  Q  L  L  L  K  N  L  K  W  S  K  L  H  L  S  R  C  *  G  D  H  P  N  P  S  G  H  Q  I  G  I  H  L  H  Y  T  I  Y  C  *  L  M  R  G  N  Q  S  L  L  M  R  P  Y  R  W  R  I  R  S  S  G  S  K  P  W  M  M  R  *  G  H  L  R  R  M  T  H  G  C  *  L  S  Y  L  Q  G  R  E  L  C  *  T  S  G  C  S  E  S  R  L  N  Q  I  A  K  K  G  S  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64892" stop="64056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPDKARQNGIVERMNRTLNERARSMRIHYGLPKTLWADAMSTAAYLINRGPSVPLGFKIPEEVWTGKELKYSHFRTFGCTAYVHVDPEKRDKLDAKAVKCYFIGYGSDLFGYRFWDDKNRKILRHCDVTFDESVLYKDREQKVLEITKQVGVEAELEKSNPRDVEADTQPTPTEESEVEQVTPEQVLRRSSKSIRAPDRYSPSLHYLLLTDEGEPESFDEALQVEDSIKWEQAMDDEMRSLEKNDTWVLTELPAGKRALLNKWVFRIKTEPDSKKRFKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71552" PGL_stop="74140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71552" e_stop="72425"/>
            <exon e_start="73577" e_stop="74140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.892"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="71552" e_stop="72425" e_length="874"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72426" i_stop="73576" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="73577" e_stop="74140" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71552" stop="72425"/>
              <exon start="73577" stop="74140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGAGAGGACGTCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAAAGAGGGTGAGGAAGGGGAAAGTGAGCAAGTGCAGAATGAGGAATTACCACCCCAACCTACCTCAGAGATGATTAACCAGGTTCTTGCTTATCTTAGCGGGTTAACTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCCCAGGTTCCGGAGGTACAACCTGCAAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGTCACGTTTCCTCGTTTGACTACAGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTCAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGTTACTACATAAAATGGGCATACTGGAACGATTTGGCGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCCGCACAGGCACCACCTATGACTTGGGCGTCGTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGGACCTTGAGGGATAGGAGGAGAGATGAGTTCTTGAGCCTAGAGCAAGGCAAGATGTCGGTGACTGCGTATGAGGCTAAGTTCCGTGCATTATCCAGGCATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAGGGGTTGAGGTCAGATTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAGAAAGTGGTAGACTTCGTGATAGAGGTGGAGGGAGTGAA : AGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGAATAGACTACCGGCAGTTGAACAAGGTAACTATTAAGAACAAGTATCGCATTCGTCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACCTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTATAGTAATGTCTTTTGGTCTTATGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATCTGGATCTCTTTGTGATGGTATTTATCGATGATATACTGATATACTCTAAGAGTAAGAAGGAACATGAGGAGCATTTGAGAATTGTGGTGGAAGTGTTAAGGGAGAAAAGGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATTCAGTGTCCTTTTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  *  E  D  V  L  *  R  K  R  T  S  T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  K  *  A  S  A  E  *  G  I  T  T  P  T  Y  L  R  D  D  *  P  G  S  C  L  S  *  R  V  N  *  S  R  P  D  T  S  S  V  F  C  T  S  T  P  G  S  G  G  T  T  C  K  L  L  W  L  P  A  W  M  P  H  W  K  *  S  R  F  L  V  *  L  Q  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  S  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  I  K  W  A  Y  W  N  D  L  A  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  G  H  M  L  S  V  N  P  H  R  H  H  L  *  L  G  R  R  S  L  A  Y  L  W  R  S  I  S  P  G  P  *  G  I  G  G  E  M  S  S  *  A  *  S  K  A  R  C  R  *  L  R  M  R  L  S  S  V  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  T  V  L  *  R  G  *  G  Q  I  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  P  F  R  K  W  *  T  S  *  *  R  W  R  E  *   : K  A  *  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  *  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  R  I  R  R  T  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  I  V  M  S  F  G  L  M  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  M  V  F  I  D  D  I  L  I  Y  S  K  S  K  K  E  H  E  E  H  L  R  I  V  V  E  V  L  R  E  K  R  L  Y  A  K  F  S  K  C  E  F  W  L  D  S  V  S  F  L  G  H  V  V  S  </first_frame>
            <second_frame>  R  E  R  T  S  S  R  G  R  G  Q  A  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  K  E  G  E  E  G  E  S  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  S  E  M  I  N  Q  V  L  A  Y  L  S  G  L  T  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  P  A  S  Y  C  G  S  P  H  G  C  L  I  G  N  S  H  V  S  S  F  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  Q  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  Y  S  G  *  L  S  *  V  T  T  *  N  G  H  T  G  T  I  W  R  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  V  T  C  *  V  S  T  R  T  G  T  T  Y  D  L  G  V  V  L  *  L  I  Y  G  E  V  Y  P  P  D  L  E  G  *  E  E  R  *  V  L  E  P  R  A  R  Q  D  V  G  D  C  V  *  G  *  V  P  C  I  I  Q  A  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  F  A  D  F  S  L  T  G  S  G  Y  S  E  I  L  S  E  S  G  R  L  R  D  R  G  G  G  S  E  :  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G  V  L  Q  C  Y  L  *  R  R  R  M  G  V  F  G  C  E  *  T  T  G  S  *  T  R  *  L  L  R  T  S  I  A  F  V  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  L  E  P  G  M  G  I  T  N  L  *  *  C  L  L  V  L  *  M  P  L  L  L  S  *  A  *  *  T  G  F  L  S  H  I  W  I  S  L  *  W  Y  L  S  M  I  Y  *  Y  T  L  R  V  R  R  N  M  R  S  I  *  E  L  W  W  K  C  *  G  R  K  G  F  M  P  N  S  P  S  V  S  F  G  *  I  Q  C  P  F  W  G  T  W  F  L </second_frame>
            <third_frame>   V  R  G  R  P  L  E  E  E  D  K  H  L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  K  R  V  R  K  G  K  V  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  L  T  R  F  L  L  I  L  A  G  *  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  P  R  F  R  R  Y  N  L  Q  A  T  V  A  P  R  M  D  A  S  L  E  I  V  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  F  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  I  L  V  D  C  H  E  L  L  H  K  M  G  I  L  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  K  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  H  A  T  Q  L  C  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  D  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  K  V  V  D  F  V  I  E  V  E  G  V  K :   G  L  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L  G  C  S  S  V  I  C  E  E  E  G  W  E  F  S  D  V  N  R  L  P  A  V  E  Q  G  N  Y  *  E  Q  V  S  H  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  P  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  *  N  Q  V  W  A  L  R  I  Y  S  N  V  F  W  S  Y  E  C  P  C  C  F  H  E  L  D  E  R  D  F  *  A  I  S  G  S  L  C  D  G  I  Y  R  *  Y  T  D  I  L  *  E  *  E  G  T  *  G  A  F  E  N  C  G  G  S  V  K  G  E  K  A  L  C  Q  I  L  Q  V  *  V  L  A  R  F  S  V  L  F  G  A  R  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71749" stop="72425"/>
                    <exon start="73577" stop="73604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKARHLQCFLHQHPRFRRYNLQATVAPRMDASLEIVTFPRLTTGPIMTSDQHELFSKFFKLKPPVFKGAESEDAYDILVDCHELLHKMGILERFGVEFVTYQFQGNAKMWWRSHVECQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGKMSVTAYEAKFRALSRHATQLCFSPQERIHRFVKGLRSDLRISALQVAATAKSFQKVVDFVIEVEGVKGLTSRVVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73687" stop="74139"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDYRQLNKVTIKNKYRIRRTDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTAFRTRYGHYEFIVMSFGLMNAPAAFMSLMNGIFKPYLDLFVMVFIDDILIYSKSKKEHEEHLRIVVEVLREKRLYAKFSKCEFWLDSVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72975" e_stop="73614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="72975" e_stop="73614" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72975" stop="73614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTTCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTTAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCATATTTTGCAATCTTAGATTATAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCATGCTAAGAGAATGGTTAGTAAAGGGTGCTCAGCTTTCTTTGCACATCTCCGGGATGATACTACCAAGGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTAACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCAATTTCCATACCTCCTTATAGAATGGCTCCAGCAGATTTAAGGGAGTTAAAGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</gDNA_template>
            <first_frame> I  *  P  W  L  H  I  F  I  C  I  F  R  I  F  Y  W  P  *  F  K  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  L  K  G  I  *  V  L  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  P  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  I  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  L  S  F  L  C  T  S  P  G  *  Y  Y  Q  G  T  F  N  *  V  G  S  G  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  A  G  Y  S  P  N  F  H  T  S  L  *  N  G  S  S  R  F  K  G  V  K  G  L  T  S  R  V  V  K  *  R  F  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  A  F  S  T  G  L  N  L  N  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  *  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Y  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  H  A  K  R  M  V  S  K  G  C  S  A  F  F  A  H  L  R  D  D  T  T  K  V  P  S  I  E  S  V  P  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  N  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  D  L  R  E  L  K  A  *  L  Q  E  L  L  S  K  G  F  I </second_frame>
            <third_frame>   L  T  L  A  P  H  F  H  M  Y  L  P  H  F  L  L  A  L  I  *  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  F  K  R  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  H  I  L  Q  S  *  I  I  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  M  L  R  E  W  L  V  K  G  A  Q  L  S  L  H  I  S  G  M  I  L  P  R  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  S  R  V  L  A  Q  F  P  Y  L  L  I  E  W  L  Q  Q  I  *  G  S  *  R  P  N  F  K  S  C  *  V  K  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73102" stop="73584"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPYFAILDYNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLHAKRMVSKGCSAFFAHLRDDTTKVPSIESVPVVREFLDVFPADLPGMPPDRDINFCIDLEPGTRPISIPPYRMAPADLRELKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="73278" PGL_stop="72953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73278" e_stop="72953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="73278" e_stop="72953" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73278" stop="72953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTATAATCTAAGATTGCAAAATATGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTAAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGAAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAAACATACAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  Q  R  Y  S  F  S  I  I  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  L  L  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  *  I  K  A  S  R  K  C  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  K  H  T  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  K  Y  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  R  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  *  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  K  L  R  P  V  E  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  N  I  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  M  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  G  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  I  P  F  K  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  N  *  G  Q  *  K  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  T  Y  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="86331" PGL_stop="84303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86331" e_stop="85204"/>
            <exon e_start="85134" e_stop="84303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="0.877"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.877">
            <gDNA_exon_boundary e_start="86331" e_stop="85204" e_length="1128"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="85134" e_stop="84303" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86331" stop="85204"/>
              <exon start="85134" stop="84303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACATGTTTCTTGCTGAAAATGACTATAAAAGGAAGTGAATTTTTGTTTTTTTCAAACAAAAAATTTTTTCCTGCTCTGCATAAATTTTTTCTCTCAAACAAATCAAAGTGTCGATCGACTGAGTCTGTGTAACTTGTTCTTGTTTTGAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTCAACAGGATTAATCCGTTTTATCTTGAAAGAAATTAATCCATAACCTCGGATACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACGTCTTGTTTTCTATTTACTTTTTGTTTCATCTTATTCTGTTTCTGTCTTTTTTAGGCTAACCTTATAATACAGGTTGAATAACAATCTTAAGAAATTTAATAAGTTTCTGTATTTGAGGTTTTTGGAGATCAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCAGTTAACGATTAAAAAAATATAAAAACTTTAACGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCAAATACTTAAATTATCTGTCATTTGTGACAGAAAAAAGAAAAATGACTAATTTAAGTCAAGCAAATGCTGGAACAGTAAGTGCTGCAATAGTAAGTGTTGCAACAACATCGGTTGCACATAATCGTTCAAATGCTTCCTTAGCACCGTATGAGAAACCTACAAAGTTTTCTGGAGTTGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAG : GATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTCGTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTATTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATAAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAATTGTGGTAAACATGGTCATAGGGCTACTGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAAAAAGGATCAAGCAAACTTGGCTAAATCCAAAGGAGAAATGGAAGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGTTATTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCATGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTAAGTTTCAATTTCAGTTCTTACCAAGAATGGATTCAAATGTGTATTTGTTTATAATAAAGTAGTAGTAAGCAAGAAAGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGGAATTGCATTTGATATGAATAAAGATTTTGCTTCTTCTT</gDNA_template>
            <first_frame> Q  T  C  F  L  L  K  M  T  I  K  G  S  E  F  L  F  F  S  N  K  K  F  F  P  A  L  H  K  F  F  L  S  N  K  S  K  C  R  S  T  E  S  V  *  L  V  L  V  L  K  F  V  E  V  K  E  I  *  G  T  A  I  S  S  T  G  L  I  R  F  I  L  K  E  I  N  P  *  P  R  I  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  V  L  F  S  I  Y  F  L  F  H  L  I  L  F  L  S  F  L  G  *  P  Y  N  T  G  *  I  T  I  L  R  N  L  I  S  F  C  I  *  G  F  W  R  S  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  Q  L  T  I  K  K  I  *  K  L  *  R  *  I  R  N  S  L  C  K  D  L  F  F  T  I  S  I  S  N  T  *  I  I  C  H  L  *  Q  K  K  E  K  *  L  I  *  V  K  Q  M  L  E  Q  *  V  L  Q  *  *  V  L  Q  Q  H  R  L  H  I  I  V  Q  M  L  P  *  H  R  M  R  N  L  Q  S  F  L  E  L  T  L  R  D  G  S  R  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  I  R  M  I  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  W  V  K  I  I  F  *  V  A  C  K  M  I  C  T  M  C  T  A  M  S  K  P  Q  K  N  S  G  M  L  *  K  R  I  T  K  Q  K  M  S  K  *  R  N  S  L  W  Q  N  F  W  T  I  R  *  *  T  V  R  Q  S  S  P  K  F  K  N  Y  R  S  *  S  M  I  F  L  L  K  :  D  *  L  *  M  M  H  F  K  L  L  Q  L  L  K  S  Y  L  R  C  G  R  I  S  K  T  T  *  N  I  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  K  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  S  I  V  V  N  M  V  I  G  L  L  N  V  G  V  L  R  R  T  R  K  K  K  D  Q  A  N  L  A  K  S  K  G  E  M  E  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  *  I  D  S  G  A  S  C  H  V  C  S  N  K  E  L  F  S  S  Y  T  P  T  P  T  D  E  K  L  F  M  E  N  S  V  I  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  C  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  *  V  S  I  S  V  L  T  K  N  G  F  K  C  V  F  V  Y  N  K  V  V  V  S  K  K  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  G  I  A  F  D  M  N  K  D  F  A  S  S  </first_frame>
            <second_frame>  R  H  V  S  C  *  K  *  L  *  K  E  V  N  F  C  F  F  Q  T  K  N  F  F  L  L  C  I  N  F  F  S  Q  T  N  Q  S  V  D  R  L  S  L  C  N  L  F  L  F  *  S  S  L  K  L  K  K  F  E  V  P  L  F  L  Q  Q  D  *  S  V  L  S  *  K  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  T  S  C  F  L  F  T  F  C  F  I  L  F  C  F  C  L  F  *  A  N  L  I  I  Q  V  E  *  Q  S  *  E  I  *  *  V  S  V  F  E  V  F  G  D  Q  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  S  *  R  L  K  K  Y  K  N  F  N  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  Q  I  L  K  L  S  V  I  C  D  R  K  K  K  N  D  *  F  K  S  S  K  C  W  N  S  K  C  C  N  S  K  C  C  N  N  I  G  C  T  *  S  F  K  C  F  L  S  T  V  *  E  T  Y  K  V  F  W  S  *  L  *  E  M  A  A  E  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  *  S  C  Y  V  R  *  N  S  A  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  G  *  K  L  Y  S  E  W  H  A  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  P  G  C  F  R  K  E  L  Q  N  R  R  C  Q  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  S  H  H  P  S  S  R  T  I  G  H  N  P  *  S  S  C  *  R :   I  D  C  E  *  C  I  S  S  C  C  N  Y  *  K  V  T  F  V  V  E  G  F  Q  K  L  L  K  T  *  T  Q  G  D  D  Y  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  S  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  Q  L  W  *  T  W  S  *  G  Y  *  M  S  G  S  *  E  G  Q  E  K  K  R  I  K  Q  T  W  L  N  P  K  E  K  W  K  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  E  *  I  L  V  P  H  V  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  R  S  C  L  W  K  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  H  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  K  F  Q  F  Q  F  L  P  R  M  D  S  N  V  Y  L  F  I  I  K  *  *  *  A  R  K  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  E  L  H  L  I  *  I  K  I  L  L  L  L </second_frame>
            <third_frame>   D  M  F  L  A  E  N  D  Y  K  R  K  *  I  F  V  F  F  K  Q  K  I  F  S  C  S  A  *  I  F  S  L  K  Q  I  K  V  S  I  D  *  V  C  V  T  C  S  C  F  E  V  R  *  S  *  R  N  L  R  Y  R  Y  F  F  N  R  I  N  P  F  Y  L  E  R  N  *  S  I  T  S  D  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  R  L  V  F  Y  L  L  F  V  S  S  Y  S  V  S  V  F  F  R  L  T  L  *  Y  R  L  N  N  N  L  K  K  F  N  K  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  V  N  D  *  K  N  I  K  T  L  T  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  Y  *  Y  F  K  Y  L  N  Y  L  S  F  V  T  E  K  R  K  M  T  N  L  S  Q  A  N  A  G  T  V  S  A  A  I  V  S  V  A  T  T  S  V  A  H  N  R  S  N  A  S  L  A  P  Y  E  K  P  T  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  K  N  D  P  V  M  S  D  E  T  P  P  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  G  K  N  Y  I  L  S  G  M  Q  D  D  L  Y  N  V  Y  S  N  V  K  T  S  K  E  L  R  D  A  L  E  K  N  Y  K  T  E  D  V  K  M  K  K  F  I  V  A  K  F  L  D  Y  K  M  I  D  S  K  T  V  I  T  Q  V  Q  E  L  *  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  S  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  I  E  D  L  I  V  R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  P  T  K  *  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  T  E  C  R  G  P  K  K  D  K  K  K  K  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  N  R  F  W  C  L  M  S  C  L  F  Q  Q  R  I  I  F  I  I  Y  S  N  T  Y  R  *  E  V  V  Y  G  K  L  R  Y  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  M  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  L  S  F  N  F  S  S  Y  Q  E  W  I  Q  M  C  I  C  L  *  *  S  S  S  K  Q  E  R  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  W  N  C  I  *  Y  E  *  R  F  C  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85771" stop="85232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFKYLNYLSFVTEKRKMTNLSQANAGTVSAAIVSVATTSVAHNRSNASLAPYEKPTKFSGVDFKRWQQKMFFYLTTLSLQKFINKNDPVMSDETPPDERFLVTEAWTHSDFLGKNYILSGMQDDLYNVYSNVKTSKELRDALEKNYKTEDVKMKKFIVAKFLDYKMIDSKTVITQVQEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84936" stop="84676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKKIPQNKRKERKHLVQKAILLRRNSMETASIVVNMVIGLLNVGVLRRTRKKKDQANLAKSKGEMEDLCAMLSECNLVGNPREW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85231" stop="85204"/>
                    <exon start="85134" stop="84908"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIIHDLLAEGLIVNDAFQVAAIIEKLPSLWKDFKNYLKHKRKEMTIEDLIVRLRIEEDNKAAEKRSRGNSAISGVNFVEEDPTK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84675" stop="84469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDSGASCHVCSNKELFSSYTPTPTDEKLFMENSVIAKVEGTDKVLLKMTSCKVVTLNRVSYVPELRKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87438" PGL_stop="88035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87438" e_stop="88035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="87438" e_stop="88035" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87438" stop="88035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGGCTTGTTAAAAATGTATTGTATATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTATAAGAATTGTTTATGTAATTGTTCTTTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTAATTTGT</gDNA_template>
            <first_frame> T  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  *  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  L  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  *  I  S  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  P  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  E  M  P  Q  V  P  K  K  P  *  A  Q  G  L  L  K  M  Y  C  I  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  F  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  N  L  </first_frame>
            <second_frame>  Q  K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  S  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  S  S  L  K  F  R  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  K  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  I  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  L  I  C </second_frame>
            <third_frame>   K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  S  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  V  P  L  N  F  E  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  T  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  G  N  A  S  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  Y  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  *  E  L  F  M  *  L  F  F  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87595" stop="87873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLSFLSQNCHIYLKSQLCLNLSSLKFRNLSCLHYQSPNFQKFQSRSFHHFQRLNFQLYQNSRFLSFLSLNCQLCQSRKCLKCLKSLEHKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="96790" PGL_stop="96045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96790" e_stop="96045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="96790" e_stop="96045" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGAGATAAGGTATTGCTAGGAGAGGCTAAAGAAGCAAAAATCGATGAGGAAGGTTTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATAATTTGATTCACACTATTCTTGCAGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGTGGAGTAGGATGAAGCGTGACATTGTTGATTTCGTTGCTCAATTCCCGAATTGTCAGCAGGTAAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTTCAATGGAATTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGACTCTATTTGGGTGATTGTTGACAGGTTAACTAAGTCTGCTCACTTCATTCCGGTTAAGGTGACTTAAAATGCAGAGAAGTTAGCCAAACTTTATATCTCAGAAATTGTTCGATTGCATGGAGTTCCACTCTCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTAGGAAAACATTGCATGCTGAATTAGGTACTAGGTTGGATCTTAGTACTGCATTTCACCATCAGACTGATGGTCAGCCTGAGCGAACGATTCAGGTTTCGGAGGATATGCTTCGTGCACGTGTGATAGAGTTTGGTTGCCATTGGGATAACTTCTTACCCTTAGCAGATTTCTCATACAACAATATCTATCACTCA</gDNA_template>
            <first_frame> I  R  D  K  V  L  L  G  E  A  K  E  A  K  I  D  E  E  G  F  L  R  I  K  G  R  V  C  V  P  R  V  D  N  L  I  H  T  I  L  A  E  A  H  S  S  R  Y  S  I  H  P  G  A  T  K  M  Y  R  D  L  K  Q  H  F  C  G  V  G  *  S  V  T  L  L  I  S  L  L  N  S  R  I  V  S  R  *  S  M  N  T  R  G  L  E  G  H  F  R  E  C  P  F  L  N  G  S  G  R  E  F  Q  W  N  S  W  L  V  F  Q  R  Q  W  V  S  M  T  L  F  G  *  L  L  T  G  *  L  S  L  L  T  S  F  R  L  R  *  L  K  M  Q  R  S  *  P  N  F  I  S  Q  K  L  F  D  C  M  E  F  H  S  P  S  Y  Q  I  E  V  R  S  L  L  L  S  L  G  K  H  C  M  L  N  *  V  L  G  W  I  L  V  L  H  F  T  I  R  L  M  V  S  L  S  E  R  F  R  F  R  R  I  C  F  V  H  V  *  *  S  L  V  A  I  G  I  T  S  Y  P  *  Q  I  S  H  T  T  I  S  I  T   </first_frame>
            <second_frame>  F  E  I  R  Y  C  *  E  R  L  K  K  Q  K  S  M  R  K  V  F  *  E  L  R  E  G  Y  V  Y  P  A  S  I  I  *  F  T  L  F  L  Q  R  L  I  V  Q  G  I  L  Y  I  L  V  Q  P  R  C  I  V  T  *  S  N  I  F  V  E  *  D  E  A  *  H  C  *  F  R  C  S  I  P  E  L  S  A  G  K  V  *  T  P  E  A  W  R  D  T  S  E  N  A  H  S  *  M  E  V  G  E  N  F  N  G  I  R  G  W  S  S  K  D  N  G  *  V  *  L  Y  L  G  D  C  *  Q  V  N  *  V  C  S  L  H  S  G  *  G  D  L  K  C  R  E  V  S  Q  T  L  Y  L  R  N  C  S  I  A  W  S  S  T  L  H  H  I  R  *  R  Y  A  V  Y  F  *  V  *  E  N  I  A  C  *  I  R  Y  *  V  G  S  *  Y  C  I  S  P  S  D  *  W  S  A  *  A  N  D  S  G  F  G  G  Y  A  S  C  T  C  D  R  V  W  L  P  L  G  *  L  L  T  L  S  R  F  L  I  Q  Q  Y  L  S  L  </second_frame>
            <third_frame>   S  R  *  G  I  A  R  R  G  *  R  S  K  N  R  *  G  R  F  F  E  N  *  G  K  G  M  C  T  P  R  R  *  F  D  S  H  Y  S  C  R  G  S  *  F  K  V  F  Y  T  S  W  C  N  Q  D  V  S  *  P  K  A  T  F  L  W  S  R  M  K  R  D  I  V  D  F  V  A  Q  F  P  N  C  Q  Q  V  K  Y  E  H  Q  R  P  G  G  T  L  Q  R  M  P  I  P  E  W  K  W  E  R  I  S  M  E  F  V  V  G  L  P  K  T  M  G  K  Y  D  S  I  W  V  I  V  D  R  L  T  K  S  A  H  F  I  P  V  K  V  T  *  N  A  E  K  L  A  K  L  Y  I  S  E  I  V  R  L  H  G  V  P  L  S  I  I  S  D  R  G  T  Q  F  T  S  K  F  R  K  T  L  H  A  E  L  G  T  R  L  D  L  S  T  A  F  H  H  Q  T  D  G  Q  P  E  R  T  I  Q  V  S  E  D  M  L  R  A  R  V  I  E  F  G  C  H  W  D  N  F  L  P  L  A  D  F  S  Y  N  N  I  Y  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96344" stop="96045"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAEKLAKLYISEIVRLHGVPLSIISDRGTQFTSKFRKTLHAELGTRLDLSTAFHHQTDGQPERTIQVSEDMLRARVIEFGCHWDNFLPLADFSYNNIYHS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96611" stop="96345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKATFLWSRMKRDIVDFVAQFPNCQQVKYEHQRPGGTLQRMPIPEWKWERISMEFVVGLPKTMGKYDSIWVIVDRLTKSAHFIPVKVT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96790" stop="96581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDKVLLGEAKEAKIDEEGFLRIKGRVCVPRVDNLIHTILAEAHSSRYSIHPGATKMYRDLKQHFCGVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="96219" PGL_stop="97249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96219" e_stop="97249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="96219" e_stop="97249" e_length="1031"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96219" stop="96712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="97249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGCATGCAATGTTTTCCTAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATATAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAACCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAATTCCATTGAAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGAATTGAGCAACGAAATCAACAATGTCACGCTTCATCCTACTCCACAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTG</gDNA_template>
            <first_frame> F  S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  I  K  F  G  *  L  L  C  I  L  S  H  L  N  R  N  E  V  S  R  L  S  *  P  V  N  N  H  P  N  R  V  I  L  T  H  C  L  W  K  T  N  H  E  F  H  *  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  E  L  S  N  E  I  N  N  V  T  L  H  P  T  P  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  A  R  I  V  *  I  K  L  S  T  R  G  T  H  T  L  P  L  I  L  K  K  P  S  S  S  I  F  A  S  L  A  S  P  S  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  N  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  L  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  Y  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  I  Y  C  F  N  T  N  T  T  A  A  N  S  K  S  W  V  R  *  L  R  S  C  T  F  N   </first_frame>
            <second_frame>  S  A  C  N  V  F  L  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  I  *  S  L  A  N  F  S  A  F  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  N  S  I  E  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  N  *  A  T  K  S  T  M  S  R  F  I  L  L  H  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  Q  E  *  C  E  S  N  Y  R  R  G  V  H  I  P  F  P  *  F  S  K  N  L  P  H  R  F  L  L  L  *  P  L  L  A  I  P  Y  L  E  S  G  S  V  S  H  Q  *  T  V  S  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  T  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  F  L  P  F  Y  L  K  H  P  P  Q  H  *  L  F  S  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  I  S  E  *  R  H  T  V  N  C  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  I  Q  T  L  L  Q  P  T  P  N  H  G  S  D  N  Y  V  R  A  P  L  I  </second_frame>
            <third_frame>   Q  H  A  M  F  S  *  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  Y  K  V  W  L  T  S  L  H  F  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  C  Q  Q  S  P  K  *  S  H  T  Y  P  L  S  L  E  D  Q  P  R  I  P  L  K  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  E  Q  R  N  Q  Q  C  H  A  S  S  Y  S  T  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  K  T  F  L  I  D  F  C  F  F  S  L  S  *  Q  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  F  P  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  S  C  L  S  T  *  S  I  R  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  A  M  I  R  I  D  F  T  L  N  P  I  *  I  M  Y  L  L  L  *  Y  K  H  Y  C  S  Q  L  Q  I  M  G  Q  I  I  T  F  V  H  L  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96684" stop="96923"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKLSTRGTHTLPLILKKPSSSIFASLASPSNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSSTSNLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96459" stop="96662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLPLPFRNGHSLKCPSRPLVFILYLLTIRELSNEINNVTLHPTPQKCCFRSRYILVAPGCIEYLEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96410" stop="96610"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYPLSLEDQPRIPLKFSPTSIQEWAFSEVSLQASGVHTLPADNSGIEQRNQQCHASSYSTKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="98771" PGL_stop="98132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98771" e_stop="98132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="98771" e_stop="98132" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98771" stop="98132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGATTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCAAATTTTGCATTCTTAAATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCTAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGGCGGTTTCGTTAGTCCGTGAGTTTCTAGATATGTTTCCTGTAGACCTTCCTGGTATGTCACCTGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATT</gDNA_template>
            <first_frame> I  *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  F  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  E  K  Y  S  C  R  L  D  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  D  F  S  K  F  C  I  L  K  L  *  C  *  N  C  N  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  G  G  F  V  S  P  *  V  S  R  Y  V  S  C  R  P  S  W  Y  V  T  *  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  Q  R  L  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  F  D  L  H  C  D  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  R  N  T  H  V  D  L  I  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  I  S  P  N  F  A  F  L  N  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  L  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  A  V  S  L  V  R  E  F  L  D  M  F  P  V  D  L  P  G  M  S  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I </second_frame>
            <third_frame>   L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  E  I  L  M  *  T  *  L  S  *  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  Q  I  L  H  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  *  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  R  R  F  R  *  S  V  S  F  *  I  C  F  L  *  T  F  L  V  C  H  L  I  G  I  L  T  F  A  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98770" stop="98132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGFDLHCDLLDMPIRVSTPVGESVIVEKVYRSCLVTFVGRNTHVDLIILEMVDFDVILGMTWISPNFAFLNCNAKTVTLAKPGTDPLVWEGDYTSTLVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIEAVSLVREFLDMFPVDLPGMSPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLGKGFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="98468" PGL_stop="98793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98468" e_stop="98793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="98468" e_stop="98793" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98468" stop="98793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATTTAAGAATGCAAAATTTGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAATCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  Y  S  F  S  I  T  I  *  E  C  K  I  W  R  N  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  S  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  F  K  N  A  K  F  G  E  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  I  K  S  T  *  V  F  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  C  K  S  K  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  L  Q  F  *  H  Y  N  L  R  M  Q  N  L  E  K  S  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  S  S  L  H  E  Y  F  S  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  N  H  N  V  N  Q  N  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98601" stop="98792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLPTKVTRQDLYTFSTITDSPTGVETRIGMSSKSQCKSKPVANEEDTYENVDPGSNNTEAMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="100035" PGL_stop="99366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100035" e_stop="99366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="100035" e_stop="99366" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100035" stop="99366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATGATTAACCAGGTTCTCGCTTATCTTAGCGGGTTATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCTGGGAGTACAACATGCAACTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGAAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTCTTCACTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGGTTCTACATAAGATGGGCATAGTGGAACGATTCAGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGTACAGGAACCACCCATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGTGATAGGAAGAGAGATGAGTTCCTGAGCTTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCTACTGCAGCAAAATC</gDNA_template>
            <first_frame> E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  L  G  V  Q  H  A  T  A  V  A  P  R  M  D  A  S  L  E  I  E  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  V  L  H  K  M  G  I  V  E  R  F  S  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  *  S  Y  V  E  C  Q  P  V  Q  E  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  S  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  *  L  L  Q  Q  N  </first_frame>
            <second_frame>  R  *  L  T  R  F  S  L  I  L  A  G  Y  P  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  F  W  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  K  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  T  N  S  S  L  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  R  F  Y  I  R  W  A  *  W  N  D  S  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  Y  R  N  H  P  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  V  I  G  R  E  M  S  S  *  A  *  S  K  A  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  S  Y  C  S  K  I </second_frame>
            <third_frame>   D  D  *  P  G  S  R  L  S  *  R  V  I  R  S  R  P  N  A  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  N  C  C  G  S  P  H  G  C  L  I  G  N  R  N  V  S  S  I  D  Y  R  A  Y  N  D  E  *  S  A  R  T  L  H  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  G  S  T  *  D  G  H  S  G  T  I  Q  C  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  V  I  V  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  *  *  E  E  R  *  V  P  E  L  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A  T  A  A  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100035" stop="99658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMINQVLAYLSGLSDQGQTPPVFSAPAPQVLGVQHATAVAPRMDASLEIETFPRLTTGPIMTSDQHELFTKFLKLKPPVFKGAESEDAYDFLVDCHEVLHKMGIVERFSVEFVTYQFQGNAKMWW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99657" stop="99424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVECQPVQEPPMTWASFSSLFMEKYIPRTLSDRKRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFSPQERIRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="111080" PGL_stop="112606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111080" e_stop="111334"/>
            <exon e_start="112030" e_stop="112606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="111080" e_stop="111334" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="112030" e_stop="112606" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111080" stop="111334"/>
              <exon start="112030" stop="112606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111099" stop="111334"/>
              <exon start="112030" stop="112405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATGTAATGATTGAACCACACACTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATG : ATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTATAGTTTTTTTTTTCTTTTTTTA</gDNA_template>
            <first_frame> S  H  V  M  I  E  P  H  T  F  Y  *  N  F  V  I  Y  N  I  I  D  E  K  *  A  S  I  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  H  T  I  S  P  P  F  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  L  L  S  F  G  T  S  F  M  :  M  G  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  R  S  *  L  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  F  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  N  V  P  D  P  H  T  F  I  E  L  L  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  Y  E  D  S  L  K  I  S  I  N  I  C  R  I  L  *  N  N  V  F  *  K  N  R  Y  E  *  D  N  I  S  E  *  L  K  Q  C  I  P  N  A  W  I  *  V  V  F  S  K  S  C  N  N  M  C  C  Y  *  R  V  Y  F  E  M  S  C  N  K  N  K  M  S  G  Y  L  I  F  I  D  K  *  K  I  K  V  V  I  *  F  A  L  *  F  F  F  S  F  F  </first_frame>
            <second_frame>  L  M  *  *  L  N  H  T  L  F  I  R  T  L  *  Y  I  I  S  *  M  K  N  E  P  P  L  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  T  P  Y  L  H  H  F  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  C  Y  L  L  E  L  H  S  * :   W  E  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  E  A  N  *  K  K  R  *  L  K  E  I  Y  *  S  I  T  N  H  F  I  S  L  F  M  L  R  Q  K  V  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  S  N  Y  S  S  M  *  P  K  I  L  R  I  I  T  L  S  D  T  *  I  L  Y  T  R  T  L  *  K  Y  R  *  I  Y  V  E  F  F  K  I  M  Y  F  E  K  I  D  M  N  K  I  T  F  L  N  N  *  N  N  V  Y  Q  M  L  G  F  K  L  F  S  Q  S  L  V  I  I  C  V  V  I  S  G  C  T  L  K  C  L  V  T  K  I  K  *  A  D  I  *  F  L  *  I  N  K  K  *  K  L  S  F  D  L  H  Y  S  F  F  F  L  F  L </second_frame>
            <third_frame>   S  C  N  D  *  T  T  H  F  L  L  E  L  C  D  I  *  Y  H  R  *  K  M  S  L  H  *  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  H  H  I  S  T  I  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  K  K  L  I  K  K  K  D  N  *  R  R  Y  I  R  V  L  Q  I  I  L  Y  H  F  S  C  *  D  K  R  *  K  *  F  S  Y  F  N  H  R  I  *  K  E  K  C  *  C  A  R  S  T  H  I  H  R  I  T  P  Q  C  N  Q  R  Y  *  E  L  S  H  *  V  I  H  K  Y  Y  I  R  G  L  F  E  N  I  D  K  Y  M  S  N  S  L  K  *  C  I  L  K  K  S  I  *  I  R  *  H  F  *  I  I  E  T  M  Y  T  K  C  L  D  L  S  C  F  L  K  V  L  *  *  Y  V  L  L  L  A  G  V  L  *  N  V  L  *  Q  K  *  N  E  R  I  S  N  F  Y  R  *  I  K  N  K  S  C  H  L  I  C  T  I  V  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111163" stop="111334"/>
                    <exon start="112030" stop="112109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLVSEIEIKCDGDIFYEVYRHRPHHISTISPNNIQNVDVHEGEWGTVDSVIFWNFIHDGKEVVAKEKVEEIDEEKKLIKKKDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112090" stop="112296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKKIIEGDILEYYKSFYITFHVETKGENNLVTLIIEYEKKNANVPDPHTFIELLLNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111182" stop="111334"/>
                    <exon start="112030" stop="112071"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSVMEIFFMKYIGTGHTISPPFPLITYKMWMFMKVNGAQLTLLSFGTSFMMGKKWWQRRKWKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="123920" PGL_stop="123323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123920" e_stop="123323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="123920" e_stop="123323" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123920" stop="123323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</gDNA_template>
            <first_frame> T  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  L  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  F  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  E  I  P  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  S  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  K  M  P  *  V  P  K  K  P  *  A  R  G  L  L  K  M  Y  C  V  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  V  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  Y  L  </first_frame>
            <second_frame>  Q  K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  C  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  N  S  L  K  F  Q  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  E  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  T  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  F  I  C </second_frame>
            <third_frame>   K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  F  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  I  P  *  N  S  K  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  I  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  E  N  A  L  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  C  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  Q  E  L  F  M  *  L  F  C  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123908" stop="123519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLEEFITWLYTMAYKYIPSFFLLLFVTLFLTSSYVIQVEARNFLEVTIPELPKPELPHLPEIPTLPKLEFPEIPKPELPTLPKPEFPEIPKPEFPSFSKVELPTLPKLEIPVIPKLELPTLSKPKMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="124980" PGL_stop="124524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124980" e_stop="124524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124980" e_stop="124524" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124980" stop="124524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</gDNA_template>
            <first_frame> V  V  A  T  K  Y  *  L  T  L  N  C  H  I  Y  M  K  F  Q  I  Y  Q  S  L  N  S  L  K  F  G  N  L  T  C  Q  L  Y  Q  S  L  N  F  Q  N  S  Q  S  R  V  F  R  H  F  L  S  E  L  P  T  W  P  K  L  E  I  L  V  I  S  K  T  E  L  S  T  L  S  N  P  K  I  P  Q  V  P  K  K  P  *  A  R  G  M  *  N  I  L  C  L  I  E  V  T  L  I  T  Y  F  P  F  V  V  I  Q  S  F  P  P  L  Y  F  E  R  I  I  Y  V  I  G  M  P  S  I  Y  *  Y  N  V  L  V  F  L  M  A  *  Y  T  T  F  I  Y  S  </first_frame>
            <second_frame>  S  S  P  L  N  I  D  *  P  *  I  A  I  F  T  *  N  F  K  F  I  K  A  *  I  P  *  N  L  E  T  *  P  A  N  S  T  K  A  *  I  S  R  I  P  K  A  E  F  S  A  I  S  *  V  N  F  Q  H  G  Q  N  S  R  F  L  S  F  L  R  L  N  C  Q  H  Y  Q  I  L  K  S  L  K  C  L  K  N  H  E  R  V  A  C  E  I  F  F  A  S  L  K  *  H  *  S  H  I  F  P  L  L  *  Y  N  H  F  L  L  S  I  L  K  G  L  F  M  *  L  V  C  H  Q  F  T  N  I  M  F  L  Y  F  *  W  H  S  T  Q  H  L  Y  T  L </second_frame>
            <third_frame>   R  R  H  *  I  L  T  N  L  E  L  P  Y  L  H  E  I  S  N  L  S  K  L  E  F  P  E  I  W  K  P  D  L  P  T  L  P  K  P  K  F  P  E  F  P  K  P  S  F  P  P  F  P  K  *  T  S  N  M  A  K  T  R  D  S  C  H  F  *  D  *  I  V  N  I  I  K  S  *  N  P  S  S  A  *  K  T  M  S  A  W  H  V  K  Y  S  L  P  H  *  S  N  I  D  H  I  F  S  L  C  C  D  T  I  I  S  S  S  L  F  *  K  D  Y  L  C  N  W  Y  A  I  N  L  L  I  *  C  S  C  I  S  N  G  I  V  H  N  I  Y  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124959" stop="124714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLNCHIYMKFQIYQSLNSLKFGNLTCQLYQSLNFQNSQSRVFRHFLSELPTWPKLEILVISKTELSTLSNPKIPQVPKKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 171 chains have been computed
$ 
$ memory statistics:
$ 114256 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 3360 bytes was the average size of a spliced alignment
$ 33216 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1384 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 218 backtrace matrices have been allocated
$ 
$ date finished: 2010-02-04 15:06:22
-->
