<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 20:34:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331779" ref_strand="+" ref_description="SGN-U331779        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G01210.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:119440-121843 REVERSE | Aliases: F10A8.9, F10A8_9 (evalue: 3e-45, score=178) genbank/nr: gi|15226197|ref|NP_178230.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] gi|25410890|pir||H84421 probable receptor-like protein kinase [imported] - Arabidopsis thaliana gi|4262228|gb|AAD14521.1| putative receptor-like protein kinase [Arabidopsis thaliana](evalue: 2e-43, score=178)">
      <seq>tcaactacaacatctggttcttgctaccaagctcccgaggcgttaaaagtggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgcttgaaatgatcacgggaagaaccccgattatccaagtaggttctactgaaatggatctcgtaaactggattcactggtgcattgaagagaagaagccactttcggatgtattggactcgtgtttagcacaagatgctgataaagaagaggaaatgatcgcggttttgaagattgcaatggcgtgtgttcacagcagcccggagagaagaccttcaatgagacacatatctgatgcattagacagactgcaagcttcctctgaatgaacaattgaaacagaaccttcaggctggcttcacattgctgcaaggattacagcatctaaccgataaccatgaagcacgatcactgcttggtgcgcgatacatattgactaacagtagtaatctccacttgtttgtgaaggaatatctgtttgaatattggcctttttgctctctgatagcaagctttttcttgtgtctatttgattaagaacataaattatttgtttctctccttattactacattactattcatcttttgtttgtcacaaatgagtatatgtaaataaaaatgatttgtcaaaaatattaaataagatggtgtaagcaataactgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15472" stop="14169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15172" g_stop="14470" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="717"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U331779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15172" e_stop="14470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</genome_strand>
        <mrna_strand>TCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346810" ref_strand="+" ref_description="SGN-U346810        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G01210.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:119440-121843 REVERSE | Aliases: F10A8.9, F10A8_9 (evalue: 3e-94, score=341) genbank/nr: gi|15226197|ref|NP_178230.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] gi|25410890|pir||H84421 probable receptor-like protein kinase [imported] - Arabidopsis thaliana gi|4262228|gb|AAD14521.1| putative receptor-like protein kinase [Arabidopsis thaliana](evalue: 2e-92, score=341)">
      <seq>tcagagacgttatcggaaaatgttgaacaatatgatctagtggcactagataatcaagtggcatttgatcttgatgaacttctcaaggcatctgcatttgtccttggtaaaagtggtatcggcattgtgtacaaagttgtgctcgaagacgggcttaacttggctgtaaggagattaggcgagggtggttcacaaagatttaaggaattccagacggaggtcgaagcaattggaaaactgagacatcaaaatattgtgactcttcgtgcctattattggtctgtcgatgagaagctactgatatatgacttcattccaaatggaaaccttaccactgcaattcacggaaaacctggtatggtgtcgtttacaccgctttcatggtccattcgactgaaaataatgaagggaactgcaaaaggtttggtttatttacatgagtacagtcccaagaaatatgttcacggcgatctaaagccttctaatatattacttgggcacgacatggagcccaaaatctcggactttggacttggacgtcttgctaatatagctggaacatcccctacgttgcaatccaaccacatgacctctgagaaaccacaacaaagtaagcaaggcagtgcgccatcagagtccgggacagntacatcaactacaacatctggntcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="16241" stop="14847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15941" g_stop="15596" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15477" g_stop="15147" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="677" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U346810" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15941" e_stop="15596"/>
          <exon e_start="15477" e_stop="15147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACGGTATGCTTCAATCTCAGGCTGTTGCCTTCTCGTTTATTGTTTTTTCTTTGATTCCCACAACTGTTTTATGCTTTCGTGATTATTAACGTGTCTATTCGCTTGTGTAATCAATTCTTAGGAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTA</genome_strand>
        <mrna_strand>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG......................................................................................................................GAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGNTACATCAACTACAACATCTGGNTCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321464" ref_strand="+" ref_description="SGN-U321464        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:123275-126426 FORWARD | Aliases: None(evalue: 5e-151, score=531) genbank/nr: gi|30677893|ref|NP_849920.1| expressed protein [Arabidopsis thaliana] gi|21539507|gb|AAM53306.1| unknown protein [Arabidopsis thaliana](evalue: 4e-149, score=531)">
      <seq>aacggcgacggcgacggcgacgatgaccgatagttgccgccgagctctagtggaagctatacattcgtctcctactcaagctgttatttatctttccggcggagcctctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgatggtcaccttaagctcgtggaaattgcgaccagtatatgcggtggtggatatccatgttttgagttgtcagctgtcaatgcagacaaacctccattggaaatacctcaaatcaatgatcgtgttaaacaatttgaaaaagttggaaagacggtcatagtatctaaccagccatatttttacaagaaagcagaactttttcctggaagtgcttttgtcattggtgcagacacagttgcaagacttgtgcatccaaagtactatggtaatgactatgggaagatgttggagatacttctgggatgtaaaaacacgggatgtactttcctagtgggtggtcggaatgttaatggaattttcaaggttcttgaggatttcgacatcccagcagagctaaaagacatgtttgtgcctataccagtcgagaaattccgtatggatatatcatccactgaaattcgaaagactcaaggactcttgtaagcccatttgcattattttcactcaggtatctgcattggttccgtttaaacaattagttctatctatgtaacatgaaaataagcgccaaaaaggaaaaaaaccgaaagcttatccattttcatcgtttgctctttccagtctcaacagaactgagaatgtgtggaattgttgttctctgatttgagtttccttactaacatatgtatattaaacagttcttggttttaaacataatcagattctgtcaattttatgcccaaatcgttgacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20975" stop="29918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21275" g_stop="21386" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="211" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="296" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="366" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="427" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="481" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="638" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24979" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="729" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25110" g_stop="25219" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="839" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="946" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29024" g_stop="29134" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1057" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="29228" g_stop="29625" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1058" r_stop="1455" r_length="398" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U321464" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21275" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24979"/>
          <exon e_start="25110" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29134"/>
          <exon e_start="29228" e_stop="29625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAGGTACACCTCTCTAACATCAAACATGGTTTTCTACTATTGAAAAGATTGATTTTTTCTAAGCATCACGAAAGATCTGTTTATCCCTAAATGAATTACATCTTATAGCAGAATGCCAAATTTTTTCGTGCAGTATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAGGTACAGTAACAAACTCTCTGCAACCGTCATGTATCATAACATTCACATCTTTTCGGAACTCTTATGAATTCTATATCATGTCTATTTCTCTAGGTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAACCTTTTT</genome_strand>
        <mrna_strand>AACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG..................................................................................................................................TATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG.............................................................................................GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345984" ref_strand="+" ref_description="SGN-U345984        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G10580.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, similar to splicing factor hPRP17 (gi:3283220); contains 7 WD-40 repeats (PF00400);similar to ESTs emb:F15435 and dbj:AUO62661 | chr1:3491282-3493738 REVERSE | Aliases: T10O24.21, T10O24_21 (evalue: 2e-118, score=422) genbank/nr: gi|30681779|ref|NP_172528.2| transducin / WD-40 repeat protein family [Arabidopsis thaliana](evalue: 2e-116, score=422)">
      <seq>gtttttccctaagcatggtcatttgattttgtcagctgggatggatacaaaggtgaaaatttgggatgtttacaattccggtaaatgtatgaggacttacatggggcatacaaaggcagtgagggatatttggtttagcaatgacgggacgaagtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaacgttcacgacgggtaagataccctatgtggtgaggcttaatcctgatgaagataagcagaatgtacttttggctggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataacagaaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttcgccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttacagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgccctgccaggtcaatttctcacctgatggacggtttgtcttctcaagagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcaaaactctcaagtgtcatgatggggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26333" stop="27703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26633" g_stop="27403" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U345984" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26633" e_stop="27403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGC--GAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATG-CCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCT</genome_strand>
        <mrna_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAAGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAAAACTCTCAAGTGTCATGATGGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317093" ref_strand="+" ref_description="SGN-U317093        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: AT3G18280.1 | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to TED4 (Zinnia elegans) GI:493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr3:6267055-6267649 FORWARD | Aliases: MIE15.9 (evalue: 4e-16, score=82) genbank/nr: gi|493721|dbj|BAA06462.1| TED4 [Zinnia elegans] >gi|641903|gb|AAB06586.1| putative nonspecific lipid transfer; auxin induced gene (evalue: 5e-15, score=84.7)">
      <seq>ctcgtgccgaattcggcacgaggaacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgttgttgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattctagttttcttcaagaaaaatgtgtttgatcaaatagtaaatgtgttttttaaagatgtcttctaaaaaaaaaaaaaaaaaaaaaaaaaccgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38184" stop="48007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="39337" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="872" r_length="849" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39338" i_stop="40033" i_length="696">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.566" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40034" g_stop="40039" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="878" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40040" i_stop="40218" i_length="179">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40219" g_stop="40240" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="899" r_length="21" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U317093" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="39337"/>
          <exon e_start="40034" e_stop="40039"/>
          <exon e_start="40219" e_stop="40240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCTATATGAATTATTTCATTATCTAACCAACTAATTAAAGTTACTTAACCCATGATTAATAGTACAAATTGCAATAATAGTTCAACATCAAGAAGGGCTAATTTCACATAACCCTCCACTTAGCTCGACTAATCTGAATTCGCATTATGTAGGCCTTATTAATGGGAAAGTGTTGCCTATCGGGAGTTCTCCATCCTCCAAATTTAAATTCAAAATCTCTGATTAAGAGTAAAGATATCTTATCCCTCGAAAAATTAATACCCCTTCATGGTTAGATGAAATTGATTTTAGATAGACAATTACCATTTCCAAACCAAGCTAGGAATATAATTTGAGAAGACTTTAGCAAGAAATTGTATTTTGCTTTCGAATACTTATAAAAGTATTTTCCATCTAAAATTTGCCATTTTATACAACAAACACAAACATTACGAGGATTCATCATGAACTGACAAGTTTTATGCTAGTTATCCGTCTACCGCAACCTAAAGACCAGCAATGTGAGCAAGCTCATATAAACGGAGTTAAATTGAGTCGTTACATCTGAAACAAATATTTTAGCACTCAAAATCTACACAAAATAATGCAACATTTTATCAAAACAAAATTGAAAAAATAACTAATCTTTTCACACTCAATAAAGAAAGTGACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTAGAA</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAAAGATGTCTTCTAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA...................................................................................................................................................................................AAAAAAAAACCGAG-ACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321029" ref_strand="+" ref_description="SGN-U321029        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:25573894-25575375 FORWARD | Aliases: T22E19.15, T22E19_15(evalue: 3e-68, score=255) genbank/nr: gi|18408976|ref|NP_564925.1| expressed protein [Arabidopsis thaliana] gi|25404715|pir||F96705 unknown protein, 73543-72303 [imported] - Arabidopsis thaliana gi|12325326|gb|AAG52607.1| unknown protein; 73543-72303 [Arabidopsis thaliana] gi|14596227|gb|AAK68841.1| Unknown protein [Arabidopsis thaliana] gi|18377450|gb|AAL66891.1| unknown protein [Arabidopsis thaliana] gi|21592439|gb|AAM64390.1| unknown [Arabidopsis thaliana](evalue: 2e-66, score=255)">
      <seq>attcgaataaaagtaaagtaaaagcttcccacttacaaaaaaataagtatagtgaatttgagaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcaaacatgaagagttctagttcttggtttggttttctaccatccatagttacatacataatatattatatatgaacgtagctcgtaggaatttaagtaaattcgtattaagcaccaattcgcgtccacatcgtgtctgtaatagcttttgtgaggaggttattgtagattatgatctctatgattttcttggtagtgaacttgaaaaagggtacaattttctgcagtttattttgtaattctatgtaagtgaacaaactatgaaatgaaaagaatggtgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44854" stop="39672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44554" g_stop="44373" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="388" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="39972" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="1021" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U321029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1021</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44554" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="39972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</genome_strand>
        <mrna_strand>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330113" ref_strand="+" ref_description="SGN-U330113        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g66860.1); similar to P0443D08.31 [Oryza sativa (japonica cultivar-group)] (GB:XP_462762.1) | chr5:15273506-15275985 FORWARD | Aliases: MXA21.22(evalue: 6e-59, score=224) genbank/nr: gi|10177796|dbj|BAB11287.1| gb|AAF31027.1~gene_id:MXA21.11~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 4e-57, score=224)">
      <seq>taagaacaaatttgttgatttcgttggtgaatatcacttagatcttatcgtgagttatggcgccgtgcctgttatagctccgcgggtaagtggtgtacacatgttactagaaagttttcaaccaattcatggagttcttttatgtgaaggtgaagacattgatccatcactttatgatagtgatgaattgtcacaagaagaagttgaagaaataaaaaaattacattcaagtgatacaacaattgatagagaaaaagattcaattgaattagcacttgcaaaactatgtcttgagagaaatataccttatttgggaatttgtagaggttcacaagtccttaatgttgcttgtggtggcaccctttatcaagatttggagaaagaattgtctaagcgttatcaaatgttatctcgttcagacactccagagatgtcgtcgttgatgttgcacccttgtcttattggagaatcagacatgaacccgtcggggttattggagtgtttaaacaccatagagaaagaattgtctaaagattcaaactcttcagaaatgtcaacaatattgaagtcatgtccgagtgatacagagaaagaatcgtctgaaaattacaaagacctattctgttcagactcttcagaaatgtcagacatgcaaccatcgacaatattgaagtcatgtccgagtgacatagagagagaattgcccaacaactgctctttagaaatgttgtcacgttcgtcatcgttgaagagtgaaagtcagagtcagagtcggagcgatataggcaaaaagtatgaaaaagttgtacatatgaactatgaaaactatgatggacatagacatgtgggtgaaaantagtgaaatacaccattacacaaatggtttaaagagtcattagaagaataatatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49076" stop="50953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49376" g_stop="49401" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49402" i_stop="49763" i_length="362">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49764" g_stop="50653" g_length="890"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="916" r_length="890" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U330113" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49376" e_stop="49401"/>
          <exon e_start="49764" e_stop="50653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACAAATTTGTTGATTTCGTTGGTAAGTAGTCGATCGATTTCTCTCTTTGTTTTAATTTTTGTATGTGAAATTAAATTTCGTAGTTAATTTCATATTATTTTTTTTTAATCTAAAGTTGTTTCATGAATTAAAATAATTAAAAAGTGTAGCATAACTGAATCTAATCGAGGTTCGTGTTAGTGGAGGAATTGAATTGGGGATAAAAAAGGGATTTTTATTGTAAGATGTTTTGTGAAATTAAAAAAAAAGTTTATTAATTATGTCTATCTTTGAAAAATTGTTACATTGATTCTTGTGATGGTTTTTACTTTTCTTTTTTAAATTTTCGTGTGATCGACTTATCTGAATTGTTTTAATTTACTTGATTATATGTTCAACGTCAGGTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGT-GGTGAAAATAGTTGAAAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGATAATAATGATGAT</genome_strand>
        <mrna_strand>TAAGAACAAATTTGTTGATTTCGTTG..........................................................................................................................................................................................................................................................................................................................................................................GTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGTGGGTGAAAANTAGTG-AAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGAATAATATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327859" ref_strand="+" ref_description="SGN-U327859        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gaatattgatgggaaaggagtggaagttagtaacgaagtaacagaagttcgagggaagttacaaataaaagatctgtaaaacagatgagctgatgagtaacaatgcttatgcaggtgatcgaacgactgaaagaaaaaactaaaagtatagtattaagatagcaccataatgctcctcattttctgctttcatagtagagagagctggctgtttttactgccttgaatttgttggtgtgttaatttatactagcaatattttgatagagctactatatatggtggtgaaatgtagcttccccatgtcatgtacattacttttttatttgactttatttagtaataatagacttatttaggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53959" stop="52998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53659" g_stop="53299" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="372"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U327859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53659" e_stop="53299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</genome_strand>
        <mrna_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326265" ref_strand="+" ref_description="SGN-U326265        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5177524-5180339 FORWARD | Aliases: T15D22.8, T15D22_8(evalue: 4e-36, score=147) genbank/nr: gi|22329567|ref|NP_172956.2| expressed protein [Arabidopsis thaliana] gi|25373433|pir||H86283 protein T15D22.8 [imported] - Arabidopsis thaliana gi|6899649|gb|AAF31026.1| T15D22.8 [Arabidopsis thaliana] gi|17979167|gb|AAL49779.1| unknown protein [Arabidopsis thaliana] gi|20259123|gb|AAM14277.1| unknown protein [Arabidopsis thaliana](evalue: 2e-34, score=147)">
      <seq>gcctggtatccaatttaccggatacctacgggacctactttaaaagctctggatgcttgttttctgacatttcattctcttcatacacccatgccaggaaatcaaagtggtcataccgctgttgttgcatgtccaactgatacggatgctgcccctaagattccactacctgcttttggccttgcttcatacaagtttaaagcgtcactttggactccaaatggcggatctggaagacagttaatgagctcgctcttacaagctgctgataactggctaacacttcttcaggtcaatcatcctgatttcagtttcttctgccagaggtgaaaacgatatactctcctctgtttgtggcgagaaaaccactctctggttgatacagctgttgattttccaaggaaaaatgggttaagacttgaagattcgctctaacctttagttacaatgctgttatctatactaagagacaaaacaaaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55622" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55410" g_stop="55406" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55405" i_stop="55320" i_length="86">
            <donor d_prob="0.624" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55228" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="97" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54117" g_stop="53715" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="500" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U326265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55410" e_stop="55406"/>
          <exon e_start="55319" e_stop="55228"/>
          <exon e_start="54117" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGTATTTTTGTTTTTCTTGCCCATTTCATATCAGGATGTATACTTGTTTTTCCCCTGAATTTTAATGTTCTGATGTCTCTCTTGCAGGTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAGGTATTTGACATTTTCCACCCTAAATTGCTTTTGTTTTTTCGGTGAATATTACAACTGTGGCTTCTTCTGTTCCCTTTCGCAATTTTCCATATTTATTCTTTTTATAATGTGTTGTGGTGTTTTTTGGTATTTGCATACGTATGTTCATCTGTACTAGTATGTTGGTATTCATATGTTTCCTTAATCTATTTGATAAAAAGAAGAAGAGGAGAACTAATTGCTGTCAAACTAAGAATTTTTGACTGCATCAATTTCATGGATTCATTGCAATCAATAATTTCAACTCATCTCACATGGGAATAAGGATTTATAAGAAGCCTCCAAAATAGTTCTATAAGAGAAACATAAATATAACCTATGTGGAAGTTGTGTAGCGAGGTTTTTATCTTCTTTTTTTCTTTTGACAGAATCCGTCTGGCTAACTGTTAGGACCAATCACAGCCTTTGAAACTCGGGATAATATGCCTTCTCCTCTACCCTTCTCCACTTAAATACCAGGCATAGTTTGCATGATGCAGGGTTTGAACTTCTGGCCTAACACAAGACCCTCAACCTTTGCCACTTGAACCGAGTCCCAAGGCTTGTCTCAGTCCTTCTTAATAGTAATAAGAAGCTAACTTATTCTTTTCACTTTGTTATTTTTCTTGAAAGATATAATCTGAATGGAATAGAACGGCAGAGTTTTTGGAGTTCGGTATCATCAGTAGCGAAGTTGGCACAAGAGTTAGTTTGTGTCATGCAGTGTTGTTTGGTTTGAATGACTTATGAAAGCCTTAAATCTGATATCCTCCAAAATTACAATGTTGTCTTCTGTCGAGTTTAGCATGTTCTCCTGGCTATAACTGGTGCATTAATCTGGTAAAAAAGAGTTTGTCCCGAAAAAGATGTCCACCCAAAGTTCATCACCTTTGCTAGCATGTTGGAACTTGGAAGCCAATATCTCCTTGAGTTGTGGTTTTGTTATTCATGTATGTCCCGGTGAACAAATCTGGTGAAGTATGCGTTAAGAGTGTGTATTATTACAATAGCCTAATGTGGGTTGCTAGTAGCATTTAACTAAATTGTTCTATTGCAAATGCCTCGTTGAAATTTTTCATGGACTTTCTGCAGGAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>GCCTG......................................................................................GTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330178" ref_strand="+" ref_description="SGN-U330178        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:135243-137802 REVERSE | Aliases: None(evalue: 1e-34, score=144) genbank/nr: unknown(evalue: 9e-33, score=144)">
      <seq>ttttattctgtcactctgcttttctctctctctctctctccattttcaactgcaaattttcaatttgaatccaaaaaaaattctctttttatacaaatccacatgctctttgattaatatatttgttagtaatattttgatctgagtcaatatttgctagggtttatataaattctccataaacttcaatttatcgaatttttaccatttctttttgtgtggctaatttttactcgtttgattcatttctgcgagaatcaattagcctaatcagccccttttcgttttcttgaagaatttctgagaaaatcgatatataaagtgcaatttatcgatatatatttgggaaaaaagggatttttttttggatatagatagagattttaggggtttttaatataaagagatgatgggtagtggattacagtttaatcggagttttaacggtgaagatcggttttatagtgctgcgaaggctcgccggaatgttaatcggagttttaatggtgaggataatttaaggagagctaagagtgatgttgctgttagtaattttccgacgaagactaaaatgaaggtggctgccgtcgatgaatcaacgaaggagttaccggttgctgctgccgtgccggcatcggaagttttgccgctttgtaatctacagcggtttttgaaatctgttactccttcagttcctgctcaatatctatcaaagacaactattaggggttggaggacgtgtgatgtggagtttctgccttactatgtacttggcgacttatgggagtcttttaaagaatggagtgcttatggagctggagttccattggttttggatgaaggtgatagtgcagttcagtactatgtgccctatttgtcaggtattcagttgtatggcgactcttcaaaggcttcagtcaaaacaaggcgaccaggtgaggagagtgatagtgactattttcgggattccagtagtgatggaagtagtgactctgaacacgagagacgttgcttgaattattcaagggagcaacggatgtatcatagccaagcaagtgaaagctctcttagtatcgatgggttatcattaagagacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60463" stop="55479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60163" g_stop="59449" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59448" i_stop="58760" i_length="689">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58759" g_stop="58548" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="927" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58547" i_stop="55951" i_length="2597">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55950" g_stop="55779" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1099" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U330178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60163" e_stop="59449"/>
          <exon e_start="58759" e_stop="58548"/>
          <exon e_start="55950" e_stop="55779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAGGTTTAAAAAAATCATGGCTTTTTGTTATTTAGCCGTTTAATTAGATTTTTAAACTCTTTTTATGGGTTTTGATTGAAAATACTTGAGCTTGTATTTAGTGATGAGTTATTCAAGAGTTCTATTGATTGGATTAGTAGAAAAAGTGTAATACTTTTATTTCGTTGTTGTTACTGTTCTTTCTCTGTTTCGTTGTGTAATGCTCTCTATTTCGTATTATTTCATTGTTGTTATTCCTGTCATATCTATATCTCCTTTTTCAAACTGTCTGGCATGGTTTATTTAGTCTGAGGGTCTACTGGAAATCACCTCTCTATCTCTACGAAGTAGAGGTAAGGTCTGGGAACACTCAACCCACCTCAGGCCTGCACTTGTTGGATTACACTTGGTATATTGTTGTTGTAGTTTGTTGTTAAGATTATAGGTTTTGATTGAAAATGGTTGTATTGGTTTAAAGCTTGCTGGAGTTTGGTCGGAATGAAAGTTTAACTGCCATTCATTGTTAAGATTATATGTTTTGATTGGCGAATGGTTTTATTGATATAAAGATTTAATCTTTTACTGGGTATTGATTGATAGTTTTACTGTAGTATATTGGCTGTGGTTTGAAATTTAAGTGTTAAAGAAAAATTATCACTTGTTTGTTGTTAATATTACAAGTTTTGAGTGAAAAATGGTTGTGTTTGTAACAGACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAGGTATATATTTGCTTGTTTTTTCCTTCCATGTTTAAAATTAGTTTTTTGTTCCTCATGGCACAGCCAAATTTTCTGGTCTTGTGAATTGATTGTCTCAATACCACACACTGAAGGTGCTTGTTTTTGTTTTATCTATGGTTTTATGTATACTCCTTGATGCTTATTTCAGTTCCACTATTATTATTGGGTATATTTAGGTTTTATAAGTAATGATCATCTTCTTTGACATTAAGTGCGGATACAGGATAGTTGCGGCTTTGATTAAAAATTGTGTATAATAATCTTGGTGTACATTATCAGAGACTCAGCAAGGAGAGTTTTTGCATGATATTTTCTTTGTTTGCATTTTCCAATTCCTCTTTGTCGTTACTGCATAATGTTTTTGCCGATGTTGTTCGGAGTCTTCATATATGTTGACGGTGTGTATGTCAGAAAGTAGTGCATTTTTGAAGTATCCAACTCGGGTGGGGCCTCATTTTTGGAGAGTTCCAGCAACATAGGTTTTTTGGTGGAAAATTCTACATGATATTGATCATGATAAGAGAAGATAGTTCTGTCAGCATCTTTTCAATAAAGAAGTGGAAAGCAAAGAGTTCTCAAGACATACAGACAGAGGCTAGAAATTGTCTACCTGCTTCATTCCGCTTTTATAATGTCATTAACTTACTGTTTCTGGAATGAGCTTTTGGGTAAATGTGTGGGTTGCAAAGTATCCAAATCGGTATCCGCTTCCGAGACGTGGCTCTTTAACCAAATACCTCAGTCGTCTTTTTAGATGGCATCTTACCATGATTGTGCATTTCTTTGTCGACCAATAGGTTGCTGCTTCTGTAAGAGCTTTCATAGCCTTTGCTTGGGCATCTCTTAAACCTAATGGTTACTTTCTCACTTAGTCTTTGTGGATAGATGCAAAACCTATCCTCACTATCTGAGGAGTCCAAAAATACGTCCAGTTGTCACCGTAGTTTATATAGATAGAACTGAAAGTGTGGGCACTGAAAGTGTGGGCCTGATGCGGATACAGAAACTGGTTGTTTTTCTTTTTCTTATTCAGGGAAATGCCATCTCATGCTTACTTTATGAAGAGAAATAATTTTTCCCATTAAGTTAAATAGATAAATAGTTCATCACTTTATTTTCAGTCAGTCAATAAGTTTCTTTAATTTACCTTTGGGAATATGATGCCCCCCAAGTTGGATAATTTGATTGTAGGTTTGGATTTCTTCATAGGGTAATTGTGGAAAGGGTGGAGAGTTCTAGAGTAAATTTGGAGGTCGTCTCTATAAACACTGTTGCCTCCAATGTCTTTGAATTCAATTTTTTACAGTCATCCTTTTTTACGTGATACTAGTACAATTTGCTACACTATGTTATCTAAATTAGCTTGACATGCCGGTACTAGCCACTAAAATACATGAATCAAAACTTGAGGTTGTTAACTGTTTTGAGGATCTTCTTTGATGAGCTCTCAAACATATTAGTATATGTTCAACTAATTTCCTTATTTAGGGAGTAAATGTTCTGCTTTTCTGTCACCTCCTCCCCGCTAGCTGATAAGAGAACCTCTGTCCTCTAGTGCTACATTTGTTAAAATATCCATTTTTTATACATACATTCAGTATATATCTATATCTATATATATATATATATATATATATATATATATATATATATAGGATTTTAGAAATATGTACATACAGATTATTTATAATGATTGAATTGCATGCTATTCTGGTTATCTTGATGTTTAGCTTATACTTGTTGTTCGATTTGGTGCTGTAGTGAGCTTAACACTTCCATCTTACTAGGAAGACCCAAAGAACCGTGTATGAAGGGGTTGTTTGGTATGTAGGATGGGATAAACAATGTTATTCCATGATTGGGATATTCCATGGGATAAAGTTATTCCACCATATATATGGATAACACCATCATTGTAGTATACATGGTGGGATAAATAATCCCGGGACTAATTAATACCCCTAAGGCCCTAACCAAATGCAAGATAAAATCATTATGCATTTTATCCTGGGATTATTATCCCTTGTACCAATCTACCCCTTAGAATGATAAATGCTAGTTTTTTTAACCAATCAAAACATGCTATATATTCTTTCCATTTATTTTTTATGGTAAGCACTGAACCAGGCTTCTTATTTACGCTTTGCTTTTCTCTCCCTCTCCCTCTTCTTGAGTCTGCCTTTCCCTATTCTCGATGTGCGTTTTCTGCTTTCGAAAATAGGAGCAGAATATTTGGTCAAATGCTATGGAATTACTATTTTCCATCCTCTCTTCTACATCCATCTTTCTTTCTGATGTATCATTTATATCCTGCGCTTTCCTGAAATATTGTTGATCTCAATACACTTCGTTAGCTAGTATATGGATGGTCATGTGGCATATAGCTAGATCTCATGTTTCATGTGTGTGTTTATGTTGTAAATGCACATGATTCTGTCTCAAAGATTGTCCTACACTACTATGCACCTACTGTATTCTGAAAGGGTCAAAAACCTTGAATTGGTGTTGTTTAGATTTTGATTGAGTAGCTTTAAGAAACATATGATATTGAATTGACATTTTCTCTTGCATAGTAGGCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</genome_strand>
        <mrna_strand>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341389" ref_strand="+" ref_description="SGN-U341389        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:6327456-6329928 FORWARD | Aliases: F15H18.25, F15H18_25(evalue: 5e-14, score=75.5) genbank/nr: gi|6714300|gb|AAF25996.1| F15H18.11 [Arabidopsis thaliana] (evalue: 3e-12, score=75.9)">
      <seq>tttaattgtactataataatgctctgtgaatatgactggtgacactaaaagcagccatgtttattgcaatttgaagcttaataatcatcagtcaaaaagtttattggtcaataaatgcaactttttttattttttggttaaaaaattatcttgaaaattcaatctttgtgtgattggaggtagatacatagtcaacccttttgtcagaaccagttgtagagaatttgtaaagcaaaaaaatccatatttttgcttaaaagttcaatctttcttctaaaggaaaaaacccaagaaaccccttttctctttttagtgtatttttcattatctacttgtttagtttgtatattttcaggtgttctcaagattacagatgaaccaagaaaaaaggtatttcttgatagtatcatcaaacctttgtgttttatgcttcattttgcaaatagataaatgttctgctgttgatccacagtttgtagtgtgtaataaatcactaaattgtagatatggtccaagaataagctttccattttatattgaagatgttcaagaatcttactgtgggtaccctggatttgggctaaattgtagtgaacaagggtttcctgttgtacatattgctggaaatgagtatgtagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70853" stop="72096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71153" g_stop="71796" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U341389" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71153" e_stop="71796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTGTACTATAATAATCCTCTGTGAATATGACTAATGACACTAAAAGCAGCCATTTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAG</genome_strand>
        <mrna_strand>TTTAATTGTACTATAATAATGCTCTGTGAATATGACTGGTGACACTAAAAGCAGCCATGTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCACTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343056" ref_strand="+" ref_description="SGN-U343056        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 7e-90, score=327) genbank/nr: gi|50932661|ref|XP_475858.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] >gi|50878408|gb|AAT85182.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|47900534|gb|AAT39269.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (evalue: 1e-88, score=329)">
      <seq>gaaattgaaattctctctcgcctacggcatcgaaatcttgttaccctttatggttgcacatcaaagcatagccgtgaactcctccttgtttatgaatacattcccaatggaacagtggcagatcacctgaatggggatagagcaaaggacggattcctcccatggcctatccgcatgaatattgctgtagaaactgcttgtgcattggcttacctccatgcttctggcacaatacatcgcgatgtaaagactagcaacatactcctcgacagcaattgttgtgtcaaagttgcagattttgggctttcgagactttttccaaatgatgctactcatgtctcaactgctcctcaagggactgctggatatgttgatccagagtatcatgaatgttaccagctcactgataaaagtgatgtttacagtttcggtgttgtccttgttgaacttatctcatcaatgcctgctgttgatattaccaggagtcgacatgaaatcaatttggccaacttagcaataaacaggattcagagatgtgcatttgatgagctgattgatccatctctgggatttaaatcagatgcacaggttatgagaatgactacttcagtagcagagctagcatttcaatgcttgcagcttgaaacagacttgagaccaaaaatgnatgaagtattagagacacttaaacatatacaaggcacctatactgatcacatcaaagatgagaagacgaatgactcaattgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="75187" stop="76537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75487" g_stop="76237" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U343056" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75487" e_stop="76237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGGATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</genome_strand>
        <mrna_strand>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGNATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330796" ref_strand="+" ref_description="SGN-U330796        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 5e-07, score=51.2) genbank/nr: gi|15222572|ref|NP_173910.1| protein kinase family [Arabidopsis thaliana] gi|25535949|pir||H86383 probable wall-associated kinase [imported] - Arabidopsis thaliana gi|12321510|gb|AAG50813.1| wall-associated kinase, putative [Arabidopsis thaliana](evalue: 3e-05, score=51.2)">
      <seq>gagaatggagagtggaaaagtctttaattttgaccctcacttgaagtttgtttcatttttccaaagtcttggtaacaaaattccaagttcacatatagaaaaataaaccagataacaaggttaaattccaatttcttgctgtgtgagaccatatagagtaaacaatatggcttctgttttcttttttttgtgttgtgtagtgatctttagcctacatcaagtactaggtaattccaaatccaactgcaccgatgagttcgagtgtggaggccttggagctatgaagtttcctttcacaaataccaccaaccctgagtgtggattatgcaggtttgattgtcatactaaaccatatcctacaattaaacttggtggacacaaatatgatgctgtagtgaagaggggtgatttattccttatttcagatcctaaacttcaagagtacttagagcacaaaagttgcaagtcttttgacagaaacttctcatttccaaattcccctttgatttctttccaaattgttcctaacttaaccttgtacaaatgcaaacatagccataaaaacaacatccagaagacaaatgattcttttttcaaagattttgatcaatatactgagtgtgaaggttttaatgtttactatcaccatcccaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77787" stop="79044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78087" g_stop="78744" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U330796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78087" e_stop="78744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAA</genome_strand>
        <mrna_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346906" ref_strand="-" ref_description="SGN-U346906        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G38210.1 | Symbol: None | serine/threonine protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290 | chr5:15278235-15282860 FORWARD | Aliases: MXA21.10, MXA21_10 (evalue: 2e-42, score=98.2) genbank/nr: gi|10177797|dbj|BAB11288.1| contains similarity to protein kinase~gene_id:MXA21.10 [Arabidopsis thaliana](evalue: 2e-40, score=98.2)">
      <seq>cgagacttttccccaacaacgttactcacatatcaacagctcctcaaggaacactcggctgttgacttgaacaggcaaaagaacgaggtcaatttggctaacttggcgataaacaggatacaaagatgtgcatttgatgaactgatcgatccatcactcgggctaaactcagatacgcttgctaagaaaatgacaatctctgtcgcggagctagcttttcgatgcttgcaacttgataaggatatcaggccaacaatggatgaagtattggacattttaagaaagatccaaggtggagagtttcatcaaaatgagaagacatttgacaatttattcaagtctaagagtgttgatatccctccattttcctctgaatcagatgaagttgcactgttaaagaaagttaagttcataagttcgtcagatactaatagtgaggtatggattagtggctctaccacaacaagcactagtgagtgagtgagtgactatctatgttgctcggaaactcaaaaaatattgctgcactcgtgacaaatccttgtaaaatgtgtggcttttgaaggatctgacgatatttttgaagagttcgagaggtgaatatcttagctaatgtagttttcagacttcagaatctactaactcttagctaaagcatttgagcttataggaattttacatataataaattatgttcatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80218" stop="81619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80518" g_stop="80575" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80576" i_stop="80676" i_length="101">
            <donor d_prob="0.376" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80677" g_stop="81318" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="700" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U346906" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80518" e_stop="80575"/>
          <exon e_start="80677" e_stop="81318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGGGTACGTTGATCCTGAGTATCACGAGTGTTATCAGCTTACCGACAAAAGTGATGTTTACAGTTTCGGGGTTGTCCTAATCGAGCTTGTATCATCAATGCCAGCTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</genome_strand>
        <mrna_strand>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGG.....................................................................................................CTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339781" ref_strand="+" ref_description="SGN-U339781        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 0.0001, score=43.9) genbank/nr: beta-galactosidase(evalue: 1e-21, score=106)">
      <seq>ttttctcgactttatcaaatgcaacagcactagtagtagcaccccaaacattaccaataagatgaaagatcattttgctggttatagaatgtacaatggctgtaaaggctttagcatatactacaagcttcctggaggtgatggtaaacacgttcgagcaggcaatcttcctgccaactgttcacttatcacattgccgatacgcccgccatcagatgatggtggtttgatcaatatgttaattgctggttttctagtaaaatggaaactgtctgaggactgttacaaatgtcactatcgcggaggtcaatgccagactaatataaccaacagatttcattgtgcatatccaaataagccacatgatcaaggtcatcacgagaataatcaacatgaacaagatgtaaaaacggctagaagaaagttcagactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86559" stop="87679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86859" g_stop="87259" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87346" g_stop="87379" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="435" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U339781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86859" e_stop="87259"/>
          <exon e_start="87346" e_stop="87379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGTTCAATATGTTAATTGCTGGTTTTCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAGGTTCAGTCACTTAGTGCATATTTCTTAGTGTCCTTTCTTGTCTTCATATAACATATCAATCATATTTTTCCTATTTTTTTCTTTAGATGTAAAAACGGCTAGAAGAAAGTTCAGACTGAC</genome_strand>
        <mrna_strand>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGATCAATATGTTAATTGCTGGTTTTCTAGTAAAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCACGAGAATAATCAACATGAACAAG......................................................................................ATGTAAAAACGGCTAGAAGAAAGTTCAGACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339780" ref_strand="-" ref_description="SGN-U339780        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 4e-09, score=65.1)">
      <seq>tttagaagaatggaaacggtctgaggactgttacaaatgacaccaacgaagaggtcaatgccagactaatatagccaacagatttcattgtgcagatccaaataagccacatgatcaaggtcatcttgtggataatcaacatgaacaagaagtaaaaacggctagaagaaagttcagactggcgggggggcccggtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86810" stop="87679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87111" g_stop="87259" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86">
            <donor d_prob="0.943" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87346" g_stop="87390" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="194" r_length="45" r_score="0.822"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U339780" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87111" e_stop="87259"/>
          <exon e_start="87346" e_stop="87390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAGGTTCAGTCACTTAGTGCATATTTCTTAGTGTCCTTTCTTGTCTTCATATAACATATCAATCATATTTTTCCTATTTTTTTCTTTAGATGTAAAAACGGCTAGAAGAAAGTTCAGACTGACTCTGGGAGCAG</genome_strand>
        <mrna_strand>TTTAGAAGAATGGAAACGGTCTGAGGACTGTTACAAATGACACCAACGAAGAGGTCAATGCCAGACTAATATAGCCAACAGATTTCATTGTGCAGATCCAAATAAGCCACATGATCAAGGTCATCTTGTGGATAATCAACATGAACAAG......................................................................................AAGTAAAAACGGCTAGAAGAAAGTTCAGACTGGCGGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329877" ref_strand="+" ref_description="SGN-U329877        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 7e-59, score=224) genbank/nr: gi|15222572|ref|NP_173910.1| protein kinase family [Arabidopsis thaliana] gi|25535949|pir||H86383 probable wall-associated kinase [imported] - Arabidopsis thaliana gi|12321510|gb|AAG50813.1| wall-associated kinase, putative [Arabidopsis thaliana](evalue: 5e-57, score=224)">
      <seq>tttaatatggctatcacttcatatgtaagctatctcctatcacttctcctgatcttagttcaggcaaagggcagaaatgattcaacttgtccaaagtcattttcatgtggaaattttactgacctaagctttcctttctctctttctacacaacctgaatgtggaataatgttcttatctggttgtgatgctaaaccatatccgagaatccgactgcttcctgagggatattagtactatgctttagagatgcataatttatcagtttggcttggggacacgaagcttcaaacaacgttgacgcaacacaagtgccaggcttttaacaaaaatttctcccttccatgctcttcttttatgtctttccatatgattaatataataagcttctacaaatgcatcagtaccagtaataatacccgtaactttacacagatatctttaaccatgatgttgagggaggcagtatatactttggtatctcagttttctcttattcagaacttgaagaggccaccgatgatttcaattcctctagagtacttggagatggaggttatggaactgtttactatggaaaacataaagatgaacaggaaattgctgtaaagcgcctctacgagcacaactgcaagcgaatggagcagtttgtaaacaaagttgatatcctaactagactaaggcacaacaatcttgtcaccctctatggatgcacttcaacgcgaagccgtgaactactccttgtctatgaatatattcctaatggcactcttgctgatcaccttcatcgtaacagagcgaaggacggatcacttacctggccaatccgcatgaacattgccatagaaactgctggtgcattggcttacctgcatgcttctgatgtaatacactgtgatgtcaagactaataacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95043" stop="97466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95379" g_stop="95755" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="435" r_length="377" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95756" i_stop="96609" i_length="854">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96610" g_stop="96750" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="576" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="97166" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="919" r_length="343" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U329877" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95379" e_stop="95755"/>
          <exon e_start="96610" e_stop="96750"/>
          <exon e_start="96824" e_stop="97166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGCAAATGGAAGAAATGATTCGACTTGTCCAAAGTCGTTTTCATGTGGAAATTTTACTGACCTGAGATTTCCTCTCTCTCTTTCCACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGGAGAACGATCATTTTTCTGGTTATAATATGTACAATGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGGAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAATGTAACAAATGTCATTATGGTGGAGGTGAATGCCAGGCTAATAAAACCAACAAATTTTCTTGTCACAAAGGTAGACATCTCCAAAATAATCTATATTTTCTAGGTCAAGTTCATGCTTCTGTTTCAAGCCGTGTAAATGATATATTTCGAATTATTGCCTCCTCCTGTAGATGCAAAAACACCTACAGGTAGTATCGATCAAAGAAAAGAAACAACCGAAAGAAATGGAAGAAATATGGTGGGGCCGATTCTGGGAACAGGTAGTAAAATATGTTTAATTGCTGTAATGTATTCTTATTACAGAATATTCATGCATATCATTTAAAATTTCGTCATTTTGGATAAACTGAAATCCTTTCTCTAGCAATAAAGAAACACAAAATGTACGAATGTGGAGTTAAGGGAGAATTCCTCGTATGTAGGAGGAGCTACTGCCTTCCTTCTAATCGGTTCGAAGAGAAAAGGAAACGATGCTATTTCTTTTTGCTTTTCCAAAGACATTGACTTACTAGCTTCTCTTCCAGTCTTTGGCGGAGTAGGATCGGTGATGATAACTTCTTCAGCTGTATACTTTATCTGGCGTTACAAGAAGAGGAGATTTAGTTCATCCCGCTTCTTCTCAACAAGGAAATTATCAGATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATGGTGAGAAACTTCTGAATATGGATATGCATCAACTGTTTCTTCTTGTGGCTAATACTTTTTCATTGATGAACAGGAAAACTTAAAGATGAACGGGAGATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACGAAGTTGATATCCTTACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATGGTAACAGAGCGAAGGGCGGATTACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</genome_strand>
        <mrna_strand>TTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATGCTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACTTTACACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCTCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTATGGAACTGTTTACTATG.........................................................................GAAAACATAAAGATGAACAGGAAATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACAAAGTTGATATCCTAACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAACGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATCGTAACAGAGCGAAGGACGGATCACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339744" ref_strand="-" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98465" stop="99552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98765" g_stop="99251" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U339744" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98765" e_stop="99251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCTCATATAAAACACACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTGGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACTGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343690" ref_strand="+" ref_description="SGN-U343690        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 4e-25, score=112) genbank/nr: gi|15222572|ref|NP_173910.1| protein kinase family [Arabidopsis thaliana] gi|25535949|pir||H86383 probable wall-associated kinase [imported] - Arabidopsis thaliana gi|12321510|gb|AAG50813.1| wall-associated kinase, putative [Arabidopsis thaliana](evalue: 3e-23, score=112)">
      <seq>tgtccttgttgagctgttatcatccatgcctgcagtagacttcagtagacataacgaagagatcaacttatctaactatgcaataaacaggattttaaggtgtgcatttgatgagttgatagacccatccctcggttttcagtctgatggagaagttaggaggatgactatttcagtagccgagatatcgtttagatgcttgcaacatgacaaggacatgagacctagtatggttgaagtactagaaacattgcaagaaattcagcatggtgagtatatacatgataagaaaatcgattgtgacggaaacacgaaagagagtgtacaagtccctctttcacctgaatcagaagtagatgtattattgaagaaactcaacaacaagtttccaacttcaccaatttcagtaactcaagtgtggattagtgactctagcacaagtatcacaagtacataatattcatctttttttggtttcacagttcatgtagataaacaaaaatacacagaaaactgagccaagtcataacattaactgaatattattgggtacttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108675" stop="109833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108975" g_stop="109533" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U343690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108975" e_stop="109533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</genome_strand>
        <mrna_strand>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339925" ref_strand="+" ref_description="SGN-U339925        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:8906439-8908841 REVERSE | Aliases: F2J7.14, F2J7_14(evalue: 4e-41, score=164) genbank/nr: gi|15222572|ref|NP_173910.1| protein kinase family [Arabidopsis thaliana] gi|25535949|pir||H86383 probable wall-associated kinase [imported] - Arabidopsis thaliana gi|12321510|gb|AAG50813.1| wall-associated kinase, putative [Arabidopsis thaliana](evalue: 3e-39, score=164)">
      <seq>tattccctccgtttcaatttgtttatctagttttgactaggcacggagtttagaaagtaaaaaaagactttcgaatctcgtggtgttagaatgtaccaaatgttctttgatcttgtggtcttaaacatatcatgtgaaacggactaaaaagggaaagatgcattctttctgaaacggactaaaaagggaagtaagtcgaacaaattgaaacgagggagtaataatctaaagacaatccacaaaagtctgttctgtttgttttgattttcgaggggaaatttacgtagtaagcatcttgatctaacagctatttctgtatgttctaaaatcaggaaaacttaaagatggaaaagaagttgcagttaagagtctttatgagaacaatcacaggcaaatgcagcagtttatcaacgaaattgaaattctcactcgccttaggcatccgaatcttgtaaccctttatggatgtacatcaagacgtagccgtgaactcttccttgtttatgagtacattcctaatggaacaattgctgatcacctgtacggacatagagcgaaggataagttactaacatggtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112721" stop="113903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113021" g_stop="113603" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-U339925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113021" e_stop="113603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATA</genome_strand>
        <mrna_strand>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322406" ref_strand="+" ref_description="SGN-U322406        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT1G25380.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr1:8903522-8905989 FORWARD | Aliases: F4F7.45 (evalue: 2e-114, score=409) genbank/nr: gi|18395659|ref|NP_564233.1| mitochondrial carrier protein family [Arabidopsis thaliana] gi|20260666|gb|AAM13231.1| unknown protein [Arabidopsis thaliana] gi|30984592|gb|AAP42759.1| At1g25380 [Arabidopsis thaliana](evalue: 1e-112, score=409)">
      <seq>cccctaactcgtccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatccgcggattgtacagtggcctcttgccgtcattggctgggattagtcatgttgctatccaatttccagcatatgaaaagctgaaatcgtacttggcaaaaagggccaataagcataccaatgaactaaactctggtgaagtagcaattgcctcttcgatggcaaaaatacttgcctctgtaatgacttatccacatgaggtcgttcgttctaaacttcaagaacaagggcaagtaagaaactcagagaaagcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttctttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121768" stop="114849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121468" g_stop="121190" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="375" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="482" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="531" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="644" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116385" g_stop="116291" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="739" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116049" g_stop="115961" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="828" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115960" i_stop="115868" i_length="93">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115867" g_stop="115773" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="923" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="115772" i_stop="115692" i_length="81">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="115691" g_stop="115149" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="924" r_stop="1466" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1467" polyA_stop="1482"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U322406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1466</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121468" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
          <exon e_start="116385" e_stop="116291"/>
          <exon e_start="116049" e_stop="115961"/>
          <exon e_start="115867" e_stop="115773"/>
          <exon e_start="115691" e_stop="115149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGGGTGAGAAGCTTTTCTCTTTTATCAGTTGCGGAAGTTTGTTTCTCATTTATCTCTTATCTGATTGATCACGTGATGTCTTTCTTGAACTGCCAGCCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAGGTAAGCAGGAAATGGACCAAGACCATCTTTGTTCTTTCCTGGAAACACAGTCCTACTTATTTATCTATCGTTCTTGACCAGGTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG.............................................................................................CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG.................................................................................GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317294" ref_strand="+" ref_description="SGN-U317294        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | 3-isopropylmalate dehydrogenase, chloroplast, putative, strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102 SP:P29102 from (Brassica napus) | chr1:30292682-30295189 FORWARD | Aliases: T21F11.11, T21F11_11(evalue: 2e-169, score=592) genbank/nr: gi|17827|emb|CAA42596.1| 3-isopropylmalate dehydrogenase [Brassica napus] >gi|126201|sp|P29102|LEU3_BRANA 3-isopropylmalate dehydrogenase, chloroplast precursor (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (evalue: 2e-169, score=598)">
      <seq>gcacgaggtttgcttcagctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttatggaatcaactggtgttgcttgcattaggatagactgtctactctacttctccttagaccctatgtgaacacgaaatgctctgtgcatcgggctgtcctttttattttgttgtaacatggaaaaagcaatgaaaataagcatttttgcaccttgggaaaactggaatggaacaattgaaccagatgttgnttgtgggttgctacattgtctctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131329" stop="122755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131036" g_stop="130783" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="496" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="572" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="661" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="748" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="865" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124371" g_stop="124264" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="973" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124161" g_stop="124108" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="974" r_stop="1027" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="123969" g_stop="123817" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1180" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="123583" g_stop="123055" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1181" r_stop="1710" r_length="530" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U317294" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131036" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124264"/>
          <exon e_start="124161" e_stop="124108"/>
          <exon e_start="123969" e_stop="123817"/>
          <exon e_start="123583" e_stop="123055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTG-TTGT-GGTTGCTACATTGTCTCTATCTT</genome_strand>
        <mrna_strand>GCACGAGGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTG-AACCAGATGTTGNTTGTGGGTTGCTACATTGTCTCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323631" ref_strand="-" ref_description="SGN-U323631        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: unnamed(evalue: 6e-08, score=24.3)">
      <seq>tttcttttttttttttttttttttttttttctttttattccctctttttaacttttctcatagaaaaaaataggaaagtatagagggaattaaaagaaataatggctattaacaaaaatattactagtatctttttatttgccattgttactatctttatttcaagcaaacttgcatatgcacatgaggaaataccccacccccacccccatccccacccccaaccttgcacacctcaccctgacccccacccccacccccacccccaagttcatgaggggccagtatttgaattttcaggaagaaaatttaaaatggaacaaggacatgaacaatgttatgaaaattgttataaaggtatatttggtggtgaaggaagtccattatatgctgaacaagaatgctatgatatgtgccataaccatggtaaatttgcattcccaacttttagtcctcctcctcctcaactataagtttaatttcgatttcaacgtatcgagaataacctaagctatgctcgctcaatcaaatgttattcgagctatttttgaggagttaaaaagaggttatattttgatcgcgattatatggaggcacatttttttttttttttgatttcatgtcatataaatttttataaccaatatatgttggtgatcatatgtaatgtaacatttttatgaaatacattttcacttggcatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-q2sot/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133642" stop="53408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133329" g_stop="132642" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="722" r_length="691" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132641" i_stop="131825" i_length="817">
            <donor d_prob="0.236" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131824" g_stop="131808" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="739" r_length="17" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="30" polyA_stop="1"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-U323631" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323631" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133329" e_stop="132642"/>
          <exon e_start="131824" e_stop="131808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTCCCTCTTTTTAACTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCA----C--CCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAATATGATGAACTTATTGGTTTGTGTTACACTTTTATTTTTATGTGGATACATTATTCTAAAAGAAAATAAATTAAATTAGAACAACATACATGCAAAACTTGTGAAGAATGTAACAAGTCATACAGAGAATGGAGATAATACAAGTTTTGTTAATCTAAATATATCGCGATCATTAATTTCATATCAAATTTATGCAATATCTACTTTTTTATTTAATTTTAAAGTCAAACGAATTTTTAAGCGACCACTTTTTTATATGCCTTATAACTAATTTTATGTTAATTATTATGATTTATAAGTTTTTTTTTTTTTACATAATTTTCAAAAATGTAATTTTACTTTAAAAAAGATATGCAAACTTTCGTGTTGAAATGCACAAACAAATTTAAAAGTTTGACTATCGCAAAATTGAGATAAAAAGAATAATTAATCTTGATAAAAAATTCAATATAAATCGTACTAGTTTATAGTCTAATTACGTATCTTTTCGTTAGTTTTTGAAATCACATTTATATATGGCACACTAAGATACATGCGAGGTCAGATTAGGCGTAATTTTATTCGAGATACGTTATATTCAAGTGTGATTCACATGTATATGATATACATTGTCTCTCTTACTCGCCTCTCTCCTTATGAATTTGCATTTCAGAACGTATCGATATCAAAGATACATGTATATATCTAATATCTTTAATACATGTATTTGCCTTAAAATCTGAAGAAACAATGTATCTAACTTCAAATCTAGTATGAATTGAACGTATTAATTACCAAAAAATATCTAATTATTTTAAACCGTAGAAAGAATTAGTATGATAGATTTTTTGTCAAAAAAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>TTTTTATTCCCTCTTTTTAACTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTATTTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCATCCCCACCCCCAACCTTGCACACCTCACCCTGACCCCCACCCCCACCCCCACCCCCAAGTTCATGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCGATTTCAACGTATCGAGAATAACCTAAGCTATGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTT-TTTTT-TTTTTGATTTCATGTCATATAAATTTTTATAACCAATATATGTTGGTGATCATATGTA-ATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15941" PGL_stop="14470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15941" e_stop="15596"/>
            <exon e_start="15477" e_stop="14470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15941" e_stop="15596" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15477" e_stop="14470" e_length="1008"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15941" stop="15596"/>
              <exon start="15477" stop="15147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15172" stop="14470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG : GAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</gDNA_template>
            <first_frame> S  E  T  L  S  E  N  V  E  Q  Y  D  L  V  A  L  D  N  Q  V  A  F  D  L  D  E  L  L  K  A  S  A  F  V  L  G  K  S  G  I  G  I  V  Y  K  V  V  L  E  D  G  L  N  L  A  V  R  R  L  G  E  G  G  S  Q  R  F  K  E  F  Q  T  E  V  E  A  I  G  K  L  R  H  Q  N  I  V  T  L  R  A  Y  Y  W  S  V  D  E  K  L  L  I  Y  D  F  I  P  N  G  N  L  T  T  A  I  H   : G  K  P  G  M  V  S  F  T  P  L  S  W  S  I  R  L  K  I  M  K  G  T  A  K  G  L  V  Y  L  H  E  Y  S  P  K  K  Y  V  H  G  D  L  K  P  S  N  I  L  L  G  H  D  M  E  P  K  I  S  D  F  G  L  G  R  L  A  N  I  A  G  T  S  P  T  L  Q  S  N  H  M  T  S  E  K  P  Q  Q  S  K  Q  G  S  A  P  S  E  S  G  T  V  T  S  T  T  T  S  G  S  C  Y  Q  A  P  E  A  L  K  V  V  K  P  S  Q  K  W  D  I  Y  S  Y  G  V  I  L  L  E  M  I  T  G  R  T  P  I  I  Q  V  G  S  T  E  M  D  L  V  N  W  I  H  W  C  I  E  E  K  K  P  L  S  D  V  L  D  S  C  L  A  Q  D  A  D  K  E  E  E  M  I  A  V  L  K  I  A  M  A  C  V  H  S  S  P  E  R  R  P  S  M  R  H  I  S  D  A  L  D  R  L  Q  A  S  S  E  *  T  I  E  T  E  P  S  G  W  L  H  I  A  A  R  I  T  A  S  N  R  *  P  *  S  T  I  T  A  W  C  A  I  H  I  D  *  Q  *  *  S  P  L  V  C  E  G  I  S  V  *  I  L  A  F  L  L  S  D  S  K  L  F  L  V  S  I  *  L  R  T  *  I  I  C  F  S  P  Y  Y  Y  I  T  I  H  L  L  F  V  T  N  E  Y  M  *  I  K  M  I  C  Q  K  Y  *  I  R  W  C  K  Q  *  L  </first_frame>
            <second_frame>  Q  R  R  Y  R  K  M  L  N  N  M  I  *  W  H  *  I  I  K  W  H  L  I  L  M  N  F  S  R  H  L  H  L  S  L  V  K  V  V  S  A  L  C  T  K  L  C  S  K  T  G  L  T  W  L  *  G  D  *  A  R  V  V  H  K  D  L  R  N  S  R  R  R  S  K  Q  L  E  N  *  D  I  K  I  L  *  L  F  V  P  I  I  G  L  S  M  R  S  Y  *  Y  M  T  S  F  Q  M  E  T  L  P  L  Q  F  T  :  E  N  L  V  W  C  R  L  H  R  F  H  G  P  F  D  *  K  *  *  R  E  L  Q  K  V  W  F  I  Y  M  S  T  V  P  R  N  M  F  T  A  I  *  S  L  L  I  Y  Y  L  G  T  T  W  S  P  K  S  R  T  L  D  L  D  V  L  L  I  *  L  E  H  P  L  R  C  N  P  T  T  *  P  L  R  N  H  N  K  V  S  K  A  V  R  H  Q  S  P  G  Q  L  H  Q  L  Q  H  L  V  L  A  T  K  L  P  R  R  *  K  W  *  N  H  H  K  N  G  T  F  T  R  T  E  *  S  C  L  K  *  S  R  E  E  P  R  L  S  K  *  V  L  L  K  W  I  S  *  T  G  F  T  G  A  L  K  R  R  S  H  F  R  M  Y  W  T  R  V  *  H  K  M  L  I  K  K  R  K  *  S  R  F  *  R  L  Q  W  R  V  F  T  A  A  R  R  E  D  L  Q  *  D  T  Y  L  M  H  *  T  D  C  K  L  P  L  N  E  Q  L  K  Q  N  L  Q  A  G  F  T  L  L  Q  G  L  Q  H  L  T  D  N  H  E  A  R  S  L  L  G  A  R  Y  I  L  T  N  S  S  N  L  H  L  F  V  K  E  Y  L  F  E  Y  W  P  F  C  S  L  I  A  S  F  F  L  C  L  F  D  *  E  H  K  L  F  V  S  L  L  I  T  T  L  L  F  I  F  C  L  S  Q  M  S  I  C  K  *  K  *  F  V  K  N  I  K  *  D  G  V  S  N  N  C </second_frame>
            <third_frame>   R  D  V  I  G  K  C  *  T  I  *  S  S  G  T  R  *  S  S  G  I  *  S  *  *  T  S  Q  G  I  C  I  C  P  W  *  K  W  Y  R  H  C  V  Q  S  C  A  R  R  R  A  *  L  G  C  K  E  I  R  R  G  W  F  T  K  I  *  G  I  P  D  G  G  R  S  N  W  K  T  E  T  S  K  Y  C  D  S  S  C  L  L  L  V  C  R  *  E  A  T  D  I  *  L  H  S  K  W  K  P  Y  H  C  N  S  R :   K  T  W  Y  G  V  V  Y  T  A  F  M  V  H  S  T  E  N  N  E  G  N  C  K  R  F  G  L  F  T  *  V  Q  S  Q  E  I  C  S  R  R  S  K  A  F  *  Y  I  T  W  A  R  H  G  A  Q  N  L  G  L  W  T  W  T  S  C  *  Y  S  W  N  I  P  Y  V  A  I  Q  P  H  D  L  *  E  T  T  T  K  *  A  R  Q  C  A  I  R  V  R  D  S  Y  I  N  Y  N  I  W  F  L  L  P  S  S  R  G  V  K  S  G  E  T  I  T  K  M  G  H  L  L  V  R  S  D  L  A  *  N  D  H  G  K  N  P  D  Y  P  S  R  F  Y  *  N  G  S  R  K  L  D  S  L  V  H  *  R  E  E  A  T  F  G  C  I  G  L  V  F  S  T  R  C  *  *  R  R  G  N  D  R  G  F  E  D  C  N  G  V  C  S  Q  Q  P  G  E  K  T  F  N  E  T  H  I  *  C  I  R  Q  T  A  S  F  L  *  M  N  N  *  N  R  T  F  R  L  A  S  H  C  C  K  D  Y  S  I  *  P  I  T  M  K  H  D  H  C  L  V  R  D  T  Y  *  L  T  V  V  I  S  T  C  L  *  R  N  I  C  L  N  I  G  L  F  A  L  *  *  Q  A  F  S  C  V  Y  L  I  K  N  I  N  Y  L  F  L  S  L  L  L  H  Y  Y  S  S  F  V  C  H  K  *  V  Y  V  N  K  N  D  L  S  K  I  L  N  K  M  V  *  A  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15941" stop="15596"/>
                    <exon start="15477" stop="14807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SETLSENVEQYDLVALDNQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLNLAVRRLGEGGSQRFKEFQTEVEAIGKLRHQNIVTLRAYYWSVDEKLLIYDFIPNGNLTTAIHGKPGMVSFTPLSWSIRLKIMKGTAKGLVYLHEYSPKKYVHGDLKPSNILLGHDMEPKISDFGLGRLANIAGTSPTLQSNHMTSEKPQQSKQGSAPSESGTVTSTTTSGSCYQAPEALKVVKPSQKWDIYSYGVILLEMITGRTPIIQVGSTEMDLVNWIHWCIEEKKPLSDVLDSCLAQDADKEEEMIAVLKIAMACVHSSPERRPSMRHISDALDRLQASSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14832" stop="14599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDCKLPLNEQLKQNLQAGFTLLQGLQHLTDNHEARSLLGARYILTNSSNLHLFVKEYLFEYWPFCSLIASFFLCLFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21275" PGL_stop="29625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21275" e_stop="21386"/>
            <exon e_start="21470" e_stop="21568"/>
            <exon e_start="21660" e_stop="21744"/>
            <exon e_start="22685" e_stop="22754"/>
            <exon e_start="23600" e_stop="23660"/>
            <exon e_start="23773" e_stop="23826"/>
            <exon e_start="24655" e_stop="24811"/>
            <exon e_start="24889" e_stop="24979"/>
            <exon e_start="25110" e_stop="25219"/>
            <exon e_start="28505" e_stop="28611"/>
            <exon e_start="29024" e_stop="29134"/>
            <exon e_start="29228" e_stop="29625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.036" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.030" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.207" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21275" e_stop="21386" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21470" e_stop="21568" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.036" acc_prob="0.994">
            <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21660" e_stop="21744" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22685" e_stop="22754" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.030">
            <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23600" e_stop="23660" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23773" e_stop="23826" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24655" e_stop="24811" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.207" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24889" e_stop="24979" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25110" e_stop="25219" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.927">
            <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28505" e_stop="28611" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.865">
            <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29024" e_stop="29134" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="0.982">
            <gDNA_exon_boundary e_start="29228" e_stop="29625" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21275" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24979"/>
              <exon start="25110" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29134"/>
              <exon start="29228" stop="29625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG : GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG : GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG : GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG : GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG : GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG : GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG : ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG : TATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG : GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT : CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG : GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAACCTTTTT</gDNA_template>
            <first_frame> N  G  D  G  D  G  D  D  D  R  *  L  P  P  S  S  S  G  S  Y  T  F  V  S  Y  S  S  C  Y  L  S  F  R  R  S  L  S   : G  A  G  V  V  D  V  S  S  G  S  I  E  H  C  A  *  I  C  S  Y  I  F  Q  N  V  Y  D  S  I  T  W  Q   : G  S  C  S  S  C  *  F  A  N  G  G  G  N  G  I  V  G  L  Q  *  S  I  K  A  F  *  T  R :   F  T  S  S  R  C  G  F  Y  W  C  L  G  *  C  T  T  K  T  W  R  S  *  :  V  S  R  V  N  Q  N  I  *  P  V  L  D  L  D  S  Y  F  D  *   : G  S  A  N  S  *  A  G  R  W  S  F  E  S  I  L  N  Q   : G  N  C  E  C  *  Q  G  S  R  N  F  C  S  R  L  D  *  I  R  S  S  R  *  I  *  K  E  F  *  *  R  G  R  A  K  A  T  S  Q  W  D  Y  M  L  Q  S  V  S  F  L  K  * :   L  V  *  C  R  E  E  N  N  P  V  W  F  L  *  S  I  A  *  W  S  P  *  A  R  G  N  C  D  Q  :  Y  M  R  W  W  I  S  M  F  *  V  V  S  C  Q  C  R  Q  T  S  I  G  N  T  S  N  Q  *  S  C  *  T  I  *  K  S  W :   K  D  G  H  S  I  *  P  A  I  F  L  Q  E  S  R  T  F  S  W  K  C  F  C  H  W  C  R  H  S  C  K  T  C  A   : S  K  V  L  W  *  *  L  W  E  D  V  G  D  T  S  G  M  *  K  H  G  M  Y  F  P  S  G  W  S  E  C  *  W  N  F  Q   : G  S  *  G  F  R  H  P  S  R  A  K  R  H  V  C  A  Y  T  S  R  E  I  P  Y  G  Y  I  I  H  *  N  S  K  D  S  R  T  L  V  S  P  F  A  L  F  S  L  R  Y  L  H  W  F  R  L  N  N  *  F  Y  L  C  N  M  K  I  S  A  K  K  E  K  N  R  K  L  I  H  F  H  R  L  L  F  P  V  S  T  E  L  R  M  C  G  I  V  V  L  *  F  E  F  P  Y  *  H  M  Y  I  K  Q  F  L  V  L  N  I  I  R  F  C  Q  F  Y  A  Q  I  V  D  N  L  F </first_frame>
            <second_frame>  T  A  T  A  T  A  T  M  T  D  S  C  R  R  A  L  V  E  A  I  H  S  S  P  T  Q  A  V  I  Y  L  S  G  G  A  S  Q  :  A  L  G  W  L  M  S  V  P  G  A  S  N  T  V  L  E  S  V  V  T  Y  S  R  M  S  M  I  Q  L  L  G  K  :  V  P  A  Q  A  A  S  S  Q  T  A  E  E  M  A  L  L  A  Y  N  R  A  L  K  L  S  K  P   : G  S  P  V  L  G  V  G  F  T  G  A  L  A  S  A  Q  P  K  R  G  D  H  R :   F  H  V  S  T  R  T  S  D  R  F  W  T  S  T  V  T  L  T  K  :  G  L  R  T  R  E  Q  E  D  G  V  S  S  Q  Y  L  I  K  :  A  I  A  N  A  S  K  V  P  G  T  F  V  P  D  L  T  E  S  E  V  P  D  E  Y  E  K  N  F  D  E  E  E  E  L  K  Q  L  L  S  G  I  I  C  F  K  V  Y  P  F  S  S   : D  S  S  N  V  E  R  K  I  I  L  S  G  S  F  N  P  L  H  D  G  H  L  K  L  V  E  I  A  T  S :   I  C  G  G  G  Y  P  C  F  E  L  S  A  V  N  A  D  K  P  P  L  E  I  P  Q  I  N  D  R  V  K  Q  F  E  K  V   : G  K  T  V  I  V  S  N  Q  P  Y  F  Y  K  K  A  E  L  F  P  G  S  A  F  V  I  G  A  D  T  V  A  R  L  V  H  :  P  K  Y  Y  G  N  D  Y  G  K  M  L  E  I  L  L  G  C  K  N  T  G  C  T  F  L  V  G  G  R  N  V  N  G  I  F  K  :  V  L  E  D  F  D  I  P  A  E  L  K  D  M  F  V  P  I  P  V  E  K  F  R  M  D  I  S  S  T  E  I  R  K  T  Q  G  L  L  *  A  H  L  H  Y  F  H  S  G  I  C  I  G  S  V  *  T  I  S  S  I  Y  V  T  *  K  *  A  P  K  R  K  K  T  E  S  L  S  I  F  I  V  C  S  F  Q  S  Q  Q  N  *  E  C  V  E  L  L  F  S  D  L  S  F  L  T  N  I  C  I  L  N  S  S  W  F  *  T  *  S  D  S  V  N  F  M  P  K  S  L  T  T  F   </second_frame>
            <third_frame>   R  R  R  R  R  R  R  *  P  I  V  A  A  E  L  *  W  K  L  Y  I  R  L  L  L  K  L  L  F  I  F  P  A  E  P  L  R :   R  W  G  G  *  C  Q  F  R  E  H  R  T  L  C  L  N  L  *  L  H  I  P  E  C  L  *  F  N  Y  L  A  R :   F  L  L  K  L  L  V  R  K  R  R  R  K  W  H  C  W  L  T  I  E  H  *  S  F  L  N  Q  :  V  H  Q  F  *  V  W  V  L  L  V  P  W  L  V  H  N  Q  N  V  E  I  I   : G  F  T  C  Q  P  E  H  L  T  G  F  G  P  R  Q  L  L  *  L  R :   V  C  E  L  V  S  R  K  M  E  F  R  V  N  T  *  S  R :   Q  L  R  M  L  A  R  F  Q  E  L  L  F  Q  T  *  L  N  Q  K  F  Q  M  N  M  K  R  I  L  M  K  R  K  S  *  S  N  F  S  V  G  L  Y  A  S  K  C  I  L  S  Q  V  :  T  R  L  M  *  R  G  K  *  S  C  L  V  P  L  I  H  C  M  M  V  T  L  S  S  W  K  L  R  P   : V  Y  A  V  V  D  I  H  V  L  S  C  Q  L  S  M  Q  T  N  L  H  W  K  Y  L  K  S  M  I  V  L  N  N  L  K  K  L  :  E  R  R  S  *  Y  L  T  S  H  I  F  T  R  K  Q  N  F  F  L  E  V  L  L  S  L  V  Q  T  Q  L  Q  D  L  C  I :   Q  S  T  M  V  M  T  M  G  R  C  W  R  Y  F  W  D  V  K  T  R  D  V  L  S  *  W  V  V  G  M  L  M  E  F  S  R :   F  L  R  I  S  T  S  Q  Q  S  *  K  T  C  L  C  L  Y  Q  S  R  N  S  V  W  I  Y  H  P  L  K  F  E  R  L  K  D  S  C  K  P  I  C  I  I  F  T  Q  V  S  A  L  V  P  F  K  Q  L  V  L  S  M  *  H  E  N  K  R  Q  K  G  K  K  P  K  A  Y  P  F  S  S  F  A  L  S  S  L  N  R  T  E  N  V  W  N  C  C  S  L  I  *  V  S  L  L  T  Y  V  Y  *  T  V  L  G  F  K  H  N  Q  I  L  S  I  L  C  P  N  R  *  Q  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21276" stop="21386"/>
                    <exon start="21470" stop="21568"/>
                    <exon start="21660" stop="21744"/>
                    <exon start="22685" stop="22754"/>
                    <exon start="23600" stop="23660"/>
                    <exon start="23773" stop="23826"/>
                    <exon start="24655" stop="24811"/>
                    <exon start="24889" stop="24979"/>
                    <exon start="25110" stop="25219"/>
                    <exon start="28505" stop="28611"/>
                    <exon start="29024" stop="29134"/>
                    <exon start="29228" stop="29347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TATATATMTDSCRRALVEAIHSSPTQAVIYLSGGASQALGWLMSVPGASNTVLESVVTYSRMSMIQLLGKVPAQAASSQTAEEMALLAYNRALKLSKPGSPVLGVGFTGALASAQPKRGDHRFHVSTRTSDRFWTSTVTLTKGLRTREQEDGVSSQYLIKAIANASKVPGTFVPDLTESEVPDEYEKNFDEEEELKQLLSGIICFKVYPFSSDSSNVERKIILSGSFNPLHDGHLKLVEIATSICGGGYPCFELSAVNADKPPLEIPQINDRVKQFEKVGKTVIVSNQPYFYKKAELFPGSAFVIGADTVARLVHPKYYGNDYGKMLEILLGCKNTGCTFLVGGRNVNGIFKVLEDFDIPAELKDMFVPIPVEKFRMDISSTEIRKTQGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26633" e_stop="27403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="26633" e_stop="27403" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26633" stop="27403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCT</gDNA_template>
            <first_frame> V  F  P  *  A  W  S  F  D  F  V  S  W  D  G  Y  K  G  E  D  L  G  C  L  Q  F  R  *  M  Y  E  D  L  H  G  A  Y  K  G  S  E  G  Y  L  V  *  Q  *  R  V  E  V  F  G  S  W  L  *  *  A  H  *  V  L  G  Y  R  N  R  T  S  N  S  N  I  L  D  K  *  Y  T  L  C  S  E  A  *  S  *  *  G  *  A  E  *  T  F  G  W  N  E  *  *  E  D  C  A  V  G  Y  K  Q  W  T  D  Y  T  R  V  R  S  T  S  G  G  S  *  Y  N  Y  L  C  G  *  *  *  E  D  C  D  L  *  *  *  *  I  T  T  C  L  G  I  W  Y  S  G  C  Y  *  V  Y  K  *  T  P  Y  A  F  H  A  I  Y  F  A  P  S  K  W  K  L  D  C  S  T  K  S  G  *  P  D  S  Y  L  *  Y  A  R  D  F  S  *  I  K  R  K  D  L  L  D  T  L  L  L  V  M  P  A  S  S  I  S  H  Q  M  D  G  L  S  C  Q  E  M  V  K  A  D  A  G  F  G  I  G  N  R  V  G  S  S  E  L  P  S  V  M  K  G  S </first_frame>
            <second_frame>  F  F  P  K  H  G  H  L  I  L  S  A  G  M  D  T  K  V  K  I  W  D  V  Y  N  S  G  K  C  M  R  T  Y  M  G  H  T  K  A  V  K  D  I  W  F  S  N  D  G  S  K  F  L  A  A  G  Y  D  K  H  I  K  Y  W  D  T  E  T  G  Q  V  I  Q  T  F  S  T  S  N  I  P  Y  V  V  R  L  N  P  D  E  D  K  Q  N  E  L  L  A  G  M  S  D  K  K  I  V  Q  W  D  I  N  S  G  Q  I  T  Q  E  Y  D  Q  H  L  G  A  V  N  T  I  T  F  V  D  N  N  R  R  I  V  T  Y  S  D  D  K  S  L  R  V  W  E  Y  G  I  L  V  V  I  K  Y  I  S  E  P  H  M  H  S  M  P  S  I  L  P  H  P  N  G  N  W  I  A  A  R  S  L  D  N  Q  I  L  I  C  S  T  R  E  I  S  A  E  *  K  E  K  I  C  W  T  H  C  C  W  L  C  L  P  V  Q  F  L  T  R  W  M  V  C  L  V  R  R  W  *  R  Q  M  L  V  L  G  L  E  I  V  *  G  L  Q  N  S  Q  V  S  *  R  G   </second_frame>
            <third_frame>   F  S  L  S  M  V  I  *  F  C  Q  L  G  W  I  Q  R  *  R  F  G  M  F  T  I  P  V  N  V  *  G  L  T  W  G  I  Q  R  Q  *  R  I  F  G  L  A  M  T  G  R  S  F  W  Q  L  A  M  I  S  T  L  S  I  G  I  Q  K  Q  D  K  *  F  K  H  S  R  Q  V  I  Y  P  M  *  *  G  L  I  L  M  R  I  S  R  M  N  F  W  L  E  *  V  I  R  R  L  C  S  G  I  *  T  V  D  R  L  H  K  S  T  I  N  I  W  G  Q  L  I  Q  L  P  L  W  I  I  I  G  G  L  *  L  I  V  M  I  N  H  Y  V  F  G  N  M  V  F  W  L  L  L  S  I  *  V  N  P  I  C  I  P  C  H  L  F  C  P  I  Q  M  E  I  G  L  Q  H  E  V  W  I  T  R  F  L  F  V  V  R  E  R  F  Q  L  N  K  K  K  R  F  A  G  H  I  V  A  G  Y  A  C  Q  F  N  F  S  P  D  G  W  F  V  L  S  G  D  G  E  G  R  C  W  F  W  D  W  K  S  C  R  V  F  R  T  P  K  C  H  E  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26634" stop="27239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPKHGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHTKAVKDIWFSNDGSKFLAAGYDKHIKYWDTETGQVIQTFSTSNIPYVVRLNPDEDKQNELLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVDNNRRIVTYSDDKSLRVWEYGILVVIKYISEPHMHSMPSILPHPNGNWIAARSLDNQILICSTREISAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38489" PGL_stop="40240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38489" e_stop="39337"/>
            <exon e_start="40034" e_stop="40039"/>
            <exon e_start="40219" e_stop="40240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.566" e_score="0.993"/>
          <exon-intron don_prob="0.900" acc_prob="0.687" e_score="0.667"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="38489" e_stop="39337" e_length="849"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.566">
            <gDNA_intron_boundary i_start="39338" i_stop="40033" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="40034" e_stop="40039" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.687">
            <gDNA_intron_boundary i_start="40040" i_stop="40218" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="0.727">
            <gDNA_exon_boundary e_start="40219" e_stop="40240" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="39337"/>
              <exon start="40034" stop="40039"/>
              <exon start="40219" stop="40240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCTATATGAATTA : AAAATT : AAAACCAAACCAAGAACTAGAA</gDNA_template>
            <first_frame> N  N  L  V  L  S  S  L  T  T  H  T  H  *  I  I  Q  N  D  N  E  V  C  V  Y  F  C  N  C  T  F  L  G  F  C  S  R  N  *  G  N  K  S  K  C  E  L  Q  S  I  A  T  K  C  M  C  K  C  H  N  I  I  N  N  S  K  F  N  L  L  L  K  V  E  R  T  K  A  M  S  L  Q  I  H  E  G  S  K  T  S  K  D  D  F  F  S  *  C  K  E  S  C  H  Y  L  W  F  P  F  P  K  L  L  R  K  I  Y  V  P  F  L  Y  Y  *  P  F  N  I  G  L  R  R  V  Y  M  E  *  H  G  K  T  S  T  E  K  S  H  I  V  D  P  Y  L  F  V  V  V  V  C  C  L  L  *  L  A  F  H  V  E  L  R  *  F  Y  M  E  *  H  G  Q  *  G  V  I  *  S  I  R  L  V  W  D  *  D  A  C  S  C  Y  I  C  C  C  I  L  *  L  A  F  M  F  K  I  L  *  L  R  C  L  F  S  C  C  *  R  V  *  Y  I  S  L  M  L  F  F  N  *  *  Y  I  N  V  G  V  N  Y  L  *  K  M  L  I  N  V  G  C  C  N  S  S  F  L  Q  E  K  C  V  *  S  N  S  K  C  V  F  *  *  C  L  L  Y  E  L  :  K  I  :  K  T  K  P  R  T  R  </first_frame>
            <second_frame>  T  T  *  Y  S  H  H  L  P  H  T  H  I  R  S  S  K  M  T  M  R  F  V  S  I  F  A  I  V  L  F  L  V  F  V  Q  E  T  K  V  T  K  A  N  V  S  C  N  P  L  Q  L  S  A  C  A  N  A  I  T  S  S  T  T  P  S  S  I  C  C  S  K  L  K  E  Q  R  P  C  L  C  K  Y  M  K  D  P  R  L  Q  K  M  I  S  S  P  N  A  K  K  V  A  T  T  C  G  S  P  F  P  N  C  *  E  K  F  M  S  H  F  Y  I  I  S  L  L  I  L  A  Y  D  A  F  I  W  S  N  M  V  R  P  V  L  K  R  V  I  *  S  T  P  T  C  L  *  *  L  F  V  V  F  Y  N  *  P  F  M  S  S  *  D  D  F  I  W  S  N  M  V  S  E  E  S  Y  S  Q  S  D  L  F  G  T  E  T  H  V  V  V  T  F  V  V  V  F  Y  N  *  L  L  C  L  R  Y  Y  D  *  D  V  Y  F  L  V  V  E  E  C  N  I  Y  P  *  C  C  S  S  I  S  N  I  L  M  L  E  L  I  I  F  E  K  C  *  L  M  L  V  V  V  I  L  V  F  F  K  K  N  V  F  D  Q  I  V  N  V  F  F  N  D  V  F  Y  M  N  * :   K  L :   K  P  N  Q  E  L  E </second_frame>
            <third_frame>   Q  L  S  T  L  I  T  Y  H  T  H  T  L  D  H  P  K  *  Q  *  G  L  C  L  F  L  Q  L  Y  F  S  W  F  L  F  K  K  L  R  *  Q  K  Q  M  *  V  A  I  H  C  N  *  V  H  V  Q  M  P  *  H  H  Q  Q  L  Q  V  Q  F  V  A  Q  S  *  K  N  K  G  H  V  F  A  N  T  *  R  I  Q  D  F  K  R  *  F  L  L  L  M  Q  R  K  L  P  L  L  V  V  P  L  S  Q  I  A  K  K  N  L  C  P  I  S  I  L  L  A  F  *  Y  W  P  T  T  R  L  Y  G  V  T  W  *  D  Q  Y  *  K  E  S  Y  S  R  P  L  L  V  C  S  S  C  L  L  S  S  I  I  S  L  S  C  R  A  K  M  I  L  Y  G  V  T  W  S  V  R  S  H  I  V  N  P  T  C  L  G  L  R  R  M  *  L  L  H  L  L  L  Y  S  I  I  S  F  Y  V  *  D  I  M  T  K  M  S  I  F  L  L  L  K  S  V  I  Y  I  L  N  V  V  L  Q  L  V  I  Y  *  C  W  S  *  L  S  L  K  N  V  N  *  C  W  L  L  *  F  *  F  S  S  R  K  M  C  L  I  K  *  *  M  C  F  L  M  M  S  S  I  *  I   : K  N   : *  N  Q  T  K  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38499" stop="38828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSHHLPHTHIRSSKMTMRFVSIFAIVLFLVFVQETKVTKANVSCNPLQLSACANAITSSTTPSSICCSKLKEQRPCLCKYMKDPRLQKMISSPNAKKVATTCGSPFPNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="44554" PGL_stop="39972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44554" e_stop="44373"/>
            <exon e_start="43241" e_stop="43036"/>
            <exon e_start="40604" e_stop="39972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44554" e_stop="44373" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43241" e_stop="43036" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="39972" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44554" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="39972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG : GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG : GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</gDNA_template>
            <first_frame> I  R  I  K  V  K  *  K  L  P  T  Y  K  K  I  S  I  V  N  L  R  S  W  F  L  Q  C  G  Q  *  W  R  F  L  F  L  F  L  *  L  L  L  H  F  I  S  L  L  L  F  L  L  S  V  L  N  D  V  V  A  R :   R  K  L  Y  R  M  S  M  M  N  G  R  T  V  Y  M  E  R  M  L  L  Q  P  M  D  W  R  H  L  V  Y  F  *  L  A  K  R  W  L  T  A  L  P  S  A  C  V  L  E  E  E  *  W  V  A  V  L  L  L  V  P  F  S  F  L  S  S  P   : G  L  V  F  *  E  Q  K  H  A  Y  W  Q  D  Q  Q  R  M  H  T  I  Q  S  I  A  R  F  S  K  L  K  T  C  H  V  P  P  S  E  K  V  Y  L  L  L  A  L  P  *  R  Y  Y  Q  *  L  D  P  F  S  T  T  G  Y  T  R  R  L  I  P  V  D  G  K  N  T  K  T  K  D  L  E  W  Q  H  L  T  I  P  N  L  L  K  E  K  A  E  S  V  F  L  L  K  G  P  L  H  L  Q  F  E  Q  D  V  S  M  R  N  S  N  M  K  S  S  S  S  W  F  G  F  L  P  S  I  V  T  Y  I  I  Y  Y  I  *  T  *  L  V  G  I  *  V  N  S  Y  *  A  P  I  R  V  H  I  V  S  V  I  A  F  V  R  R  L  L  *  I  M  I  S  M  I  F  L  V  V  N  L  K  K  G  T  I  F  C  S  L  F  C  N  S  M  *  V  N  K  L  *  N  E  K  N  G  V  </first_frame>
            <second_frame>  F  E  *  K  *  S  K  S  F  P  L  T  K  K  *  V  *  *  I  *  E  V  G  F  C  S  V  V  S  N  G  G  F  Y  S  C  S  C  D  C  Y  C  T  S  S  H  C  F  C  S  C  C  R  C  *  T  T  S  *  H   : G  E  S  C  T  G  *  V  *  *  T  G  V  L  C  I  W  N  G  C  F  Y  S  L  W  I  G  G  I  W  F  T  S  D  *  P  N  V  G  *  R  H  Y  Q  V  L  V  F  W  K  R  N  D  G  W  Q  F  Y  Y  L  C  H  F  L  F  C  L  L  L  :  G  *  F  F  R  S  R  S  M  L  I  G  R  I  S  K  E  C  I  P  Y  K  V  S  R  G  F  P  S  *  K  L  V  M  F  H  P  P  K  R  C  I  C  C  W  R  C  P  D  V  I  I  N  D  W  I  H  F  L  L  L  D  T  L  E  G  *  Y  R  W  M  A  K  T  P  K  R  R  T  W  N  G  S  I  *  L  Y  R  I  Y  *  K  K  R  L  N  P  C  F  F  *  K  V  R  C  I  Y  N  S  N  K  M  F  R  *  G  T  Q  T  *  R  V  L  V  L  G  L  V  F  Y  H  P  *  L  H  T  *  Y  I  I  Y  E  R  S  S  *  E  F  K  *  I  R  I  K  H  Q  F  A  S  T  S  C  L  *  *  L  L  *  G  G  Y  C  R  L  *  S  L  *  F  S  W  *  *  T  *  K  R  V  Q  F  S  A  V  Y  F  V  I  L  C  K  *  T  N  Y  E  M  K  R  M  V  S </second_frame>
            <third_frame>   S  N  K  S  K  V  K  A  S  H  L  Q  K  N  K  Y  S  E  F  E  K  L  V  F  A  V  W  S  V  M  A  V  S  I  P  V  L  V  I  V  I  A  L  H  L  I  A  F  V  L  A  V  G  A  E  R  R  R  S  T  :  A  K  V  V  P  D  E  Y  D  E  R  A  Y  C  V  Y  G  T  D  A  S  T  A  Y  G  L  A  A  F  G  L  L  L  I  S  Q  T  L  V  N  G  I  T  K  C  L  C  F  G  R  G  M  M  G  G  S  S  T  T  C  A  I  F  F  F  V  F  S  W :   V  S  F  L  G  A  E  A  C  L  L  A  G  S  A  K  N  A  Y  H  T  K  Y  R  A  V  F  Q  V  E  N  L  S  C  S  T  L  R  K  G  V  F  A  A  G  A  A  L  T  L  L  S  M  I  G  S  I  F  Y  Y  W  I  H  S  K  A  D  T  G  G  W  Q  K  H  Q  N  E  G  L  G  M  A  A  S  N  Y  T  E  S  T  E  R  K  G  *  I  R  V  S  S  K  R  S  V  A  F  T  I  R  T  R  C  F  D  E  E  L  K  H  E  E  F  *  F  L  V  W  F  S  T  I  H  S  Y  I  H  N  I  L  Y  M  N  V  A  R  R  N  L  S  K  F  V  L  S  T  N  S  R  P  H  R  V  C  N  S  F  C  E  E  V  I  V  D  Y  D  L  Y  D  F  L  G  S  E  L  E  K  G  Y  N  F  L  Q  F  I  L  *  F  Y  V  S  E  Q  T  M  K  *  K  E  W  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44552" stop="44373"/>
                    <exon start="43241" stop="43036"/>
                    <exon start="40604" stop="40319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKSKVKASHLQKNKYSEFEKLVFAVWSVMAVSIPVLVIVIALHLIAFVLAVGAERRRSTAKVVPDEYDERAYCVYGTDASTAYGLAAFGLLLISQTLVNGITKCLCFGRGMMGGSSTTCAIFFFVFSWVSFLGAEACLLAGSAKNAYHTKYRAVFQVENLSCSTLRKGVFAAGAALTLLSMIGSIFYYWIHSKADTGGWQKHQNEGLGMAASNYTESTERKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40234" stop="40016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVWFSTIHSYIHNILYMNVARRNLSKFVLSTNSRPHRVCNSFCEEVIVDYDLYDFLGSELEKGYNFLQFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49376" PGL_stop="50653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49376" e_stop="49401"/>
            <exon e_start="49764" e_stop="50653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49376" e_stop="49401" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="49402" i_stop="49763" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="49764" e_stop="50653" e_length="890"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49401"/>
              <exon start="49764" stop="50653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAACAAATTTGTTGATTTCGTTG : GTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGTGGTGAAAATAGTTGAAAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGATAATAATGATGAT</gDNA_template>
            <first_frame> *  E  Q  I  C  *  F  R  W :   *  I  S  L  R  S  Y  R  E  L  W  R  R  A  C  Y  S  S  A  G  K  W  C  T  H  V  T  R  K  F  S  T  N  S  W  S  S  F  M  *  R  *  R  H  *  S  I  T  L  *  *  *  *  I  V  T  R  R  S  *  R  N  K  K  I  T  F  K  *  Y  N  N  *  *  R  K  R  F  N  *  I  S  T  C  K  T  M  S  *  E  K  Y  T  L  F  G  N  L  *  R  F  T  S  P  *  C  C  L  W  W  H  P  L  S  R  F  G  E  R  I  V  *  A  L  S  N  V  I  S  F  R  H  S  R  D  V  V  V  D  V  A  P  L  S  Y  W  R  I  R  H  E  P  V  G  V  I  G  V  F  K  H  H  R  E  R  I  V  *  R  F  K  L  F  R  N  V  N  N  I  E  V  M  S  E  *  Y  R  E  R  I  V  *  K  L  Q  R  P  I  L  F  R  L  F  R  N  V  R  H  A  T  I  D  N  I  E  V  M  S  E  *  H  R  E  R  I  A  Q  Q  L  L  F  R  N  V  V  T  F  V  I  V  E  E  *  K  S  E  S  E  S  E  R  Y  R  Q  K  V  *  K  S  C  T  Y  E  L  *  K  L  *  W  T  *  T  C  G  E  N  S  *  K  Y  T  I  T  Q  M  V  *  R  V  I  R  R  *  *  *  *  </first_frame>
            <second_frame>  K  N  K  F  V  D  F  V   : G  E  Y  H  L  D  L  I  V  S  Y  G  A  V  P  V  I  A  P  R  V  S  G  V  H  M  L  L  E  S  F  Q  P  I  H  G  V  L  L  C  E  G  E  D  I  D  P  S  L  Y  D  S  D  E  L  S  Q  E  E  V  E  E  I  K  K  L  H  S  S  D  T  T  I  D  R  E  K  D  S  I  E  L  A  L  A  K  L  C  L  E  R  N  I  P  Y  L  G  I  C  R  G  S  Q  V  L  N  V  A  C  G  G  T  L  Y  Q  D  L  E  K  E  L  S  K  R  Y  Q  M  L  S  R  S  D  T  P  E  M  S  S  L  M  L  H  P  C  L  I  G  E  S  D  M  N  P  S  G  L  L  E  C  L  N  T  I  E  K  E  L  S  K  D  S  N  S  S  E  M  S  T  I  L  K  S  C  P  S  D  T  E  K  E  S  S  E  N  Y  K  D  L  F  C  S  D  S  S  E  M  S  D  M  Q  P  S  T  I  L  K  S  C  P  S  D  I  E  R  E  L  P  N  N  C  S  L  E  M  L  S  R  S  S  S  L  K  S  E  S  Q  S  Q  S  R  S  D  I  G  K  K  Y  E  K  V  V  H  M  N  Y  E  N  Y  D  G  H  R  H  V  V  K  I  V  E  N  T  P  L  H  K  W  F  K  E  S  L  E  D  N  N  D  D </second_frame>
            <third_frame>   R  T  N  L  L  I  S  L  :  V  N  I  T  *  I  L  S  *  V  M  A  P  C  L  L  *  L  R  G  *  V  V  Y  T  C  Y  *  K  V  F  N  Q  F  M  E  F  F  Y  V  K  V  K  T  L  I  H  H  F  M  I  V  M  N  C  H  K  K  K  L  K  K  *  K  N  Y  I  Q  V  I  Q  Q  L  I  E  K  K  I  Q  L  N  *  H  L  Q  N  Y  V  L  R  E  I  Y  L  I  W  E  F  V  E  V  H  K  S  L  M  L  L  V  V  A  P  F  I  K  I  W  R  K  N  C  L  S  V  I  K  C  Y  L  V  Q  T  L  Q  R  C  R  R  *  C  C  T  L  V  L  L  E  N  Q  T  *  T  R  R  G  Y  W  S  V  *  T  P  *  R  K  N  C  L  K  I  Q  T  L  Q  K  C  Q  Q  Y  *  S  H  V  R  V  I  Q  R  K  N  R  L  K  I  T  K  T  Y  S  V  Q  T  L  Q  K  C  Q  T  C  N  H  R  Q  Y  *  S  H  V  R  V  T  *  R  E  N  C  P  T  T  A  L  *  K  C  C  H  V  R  H  R  *  R  V  K  V  R  V  R  V  G  A  I  *  A  K  S  M  K  K  L  Y  I  *  T  M  K  T  M  M  D  I  D  M  W  *  K  *  L  K  I  H  H  Y  T  N  G  L  K  S  H  *  K  I  I  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49377" stop="49401"/>
                    <exon start="49764" stop="50653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKFVDFVGEYHLDLIVSYGAVPVIAPRVSGVHMLLESFQPIHGVLLCEGEDIDPSLYDSDELSQEEVEEIKKLHSSDTTIDREKDSIELALAKLCLERNIPYLGICRGSQVLNVACGGTLYQDLEKELSKRYQMLSRSDTPEMSSLMLHPCLIGESDMNPSGLLECLNTIEKELSKDSNSSEMSTILKSCPSDTEKESSENYKDLFCSDSSEMSDMQPSTILKSCPSDIERELPNNCSLEMLSRSSSLKSESQSQSRSDIGKKYEKVVHMNYENYDGHRHVVKIVENTPLHKWFKESLEDNNDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="53659" PGL_stop="53299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53659" e_stop="53299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53659" e_stop="53299" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53659" stop="53299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</gDNA_template>
            <first_frame> E  Y  *  W  E  R  S  G  S  *  *  R  S  N  R  S  S  R  E  V  T  N  K  R  S  V  K  Q  M  S  *  *  V  T  M  L  M  Q  V  I  E  R  L  K  E  K  T  K  S  I  V  L  R  *  H  H  N  A  P  H  F  L  L  S  *  *  R  E  L  A  V  F  T  A  L  N  L  L  V  C  *  F  I  L  A  I  F  *  *  S  Y  Y  I  W  W  *  N  V  A  S  P  C  H  V  H  Y  F  F  I  *  L  Y  L  V  I  I  D  L  F  R  </first_frame>
            <second_frame>  N  I  D  G  K  G  V  E  V  S  N  E  V  T  E  V  R  G  K  L  Q  I  K  D  L  *  N  R  *  A  D  E  *  Q  C  L  C  R  *  S  N  D  *  K  K  K  L  K  V  *  Y  *  D  S  T  I  M  L  L  I  F  C  F  H  S  R  E  S  W  L  F  L  L  P  *  I  C  W  C  V  N  L  Y  *  Q  Y  F  D  R  A  T  I  Y  G  G  E  M  *  L  P  H  V  M  Y  I  T  F  L  F  D  F  I  *  *  *  *  T  Y  L  G </second_frame>
            <third_frame>   I  L  M  G  K  E  W  K  L  V  T  K  *  Q  K  F  E  G  S  Y  K  *  K  I  C  K  T  D  E  L  M  S  N  N  A  Y  A  G  D  R  T  T  E  R  K  N  *  K  Y  S  I  K  I  A  P  *  C  S  S  F  S  A  F  I  V  E  R  A  G  C  F  Y  C  L  E  F  V  G  V  L  I  Y  T  S  N  I  L  I  E  L  L  Y  M  V  V  K  C  S  F  P  M  S  C  T  L  L  F  Y  L  T  L  F  S  N  N  R  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="55410" PGL_stop="53715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55410" e_stop="55406"/>
            <exon e_start="55319" e_stop="55228"/>
            <exon e_start="54117" e_stop="53715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.624" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55410" e_stop="55406" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.624" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55405" i_stop="55320" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55319" e_stop="55228" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="54117" e_stop="53715" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55410" stop="55406"/>
              <exon start="55319" stop="55228"/>
              <exon start="54117" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTG : GTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG : GAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</gDNA_template>
            <first_frame> A  W :   Y  P  I  Y  R  I  P  T  G  P  T  L  K  A  L  D  A  C  F  L  T  F  H  S  L  H  T  P  M  P   : G  N  Q  S  G  H  T  A  V  V  A  C  P  T  D  T  D  A  A  P  K  I  P  L  P  A  F  G  L  A  S  Y  K  F  K  A  S  L  W  T  P  N  G  G  S  G  R  Q  L  M  S  S  L  L  Q  A  A  D  N  W  L  T  L  L  Q  V  N  H  P  D  F  S  F  F  C  Q  R  *  K  R  Y  T  L  L  C  L  W  R  E  N  H  S  L  V  D  T  A  V  D  F  P  R  K  N  G  L  R  L  E  D  S  L  *  P  L  V  T  M  L  L  S  I  L  R  D  K  T  K  F  K  K  K  K  K   </first_frame>
            <second_frame>  P   : G  I  Q  F  T  G  Y  L  R  D  L  L  *  K  L  W  M  L  V  F  *  H  F  I  L  F  I  H  P  C  Q  :  E  I  K  V  V  I  P  L  L  L  H  V  Q  L  I  R  M  L  P  L  R  F  H  Y  L  L  L  A  L  L  H  T  S  L  K  R  H  F  G  L  Q  M  A  D  L  E  D  S  *  *  A  R  S  Y  K  L  L  I  T  G  *  H  F  F  R  S  I  I  L  I  S  V  S  S  A  R  G  E  N  D  I  L  S  S  V  C  G  E  K  T  T  L  W  L  I  Q  L  L  I  F  Q  G  K  M  G  *  D  L  K  I  R  S  N  L  *  L  Q  C  C  Y  L  Y  *  E  T  K  Q  N  S  K  K  K  K  K  </second_frame>
            <third_frame>   L  :  V  S  N  L  P  D  T  Y  G  T  Y  F  K  S  S  G  C  L  F  S  D  I  S  F  S  S  Y  T  H  A  R :   K  S  K  W  S  Y  R  C  C  C  M  S  N  *  Y  G  C  C  P  *  D  S  T  T  C  F  W  P  C  F  I  Q  V  *  S  V  T  L  D  S  K  W  R  I  W  K  T  V  N  E  L  A  L  T  S  C  *  *  L  A  N  T  S  S  G  Q  S  S  *  F  Q  F  L  L  P  E  V  K  T  I  Y  S  P  L  F  V  A  R  K  P  L  S  G  *  Y  S  C  *  F  S  K  E  K  W  V  K  T  *  R  F  A  L  T  F  S  Y  N  A  V  I  Y  T  K  R  Q  N  K  I  Q  K  K  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55410" stop="55406"/>
                    <exon start="55319" stop="55228"/>
                    <exon start="54117" stop="53885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWYPIYRIPTGPTLKALDACFLTFHSLHTPMPGNQSGHTAVVACPTDTDAAPKIPLPAFGLASYKFKASLWTPNGGSGRQLMSSLLQAADNWLTLLQVNHPDFSFFCQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60163" PGL_stop="55779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60163" e_stop="59449"/>
            <exon e_start="58759" e_stop="58548"/>
            <exon e_start="55950" e_stop="55779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60163" e_stop="59449" e_length="715"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59448" i_stop="58760" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58759" e_stop="58548" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.889">
            <gDNA_intron_boundary i_start="58547" i_stop="55951" i_length="2597"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55950" e_stop="55779" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60163" stop="59449"/>
              <exon start="58759" stop="58548"/>
              <exon start="55950" stop="55779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAG : ACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAG : GCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</gDNA_template>
            <first_frame> F  Y  S  V  T  L  L  F  S  L  S  L  S  P  F  S  T  A  N  F  Q  F  E  S  K  K  N  S  L  F  I  Q  I  H  M  L  F  D  *  Y  I  C  *  *  Y  F  D  L  S  Q  Y  L  L  G  F  I  *  I  L  H  K  L  Q  F  I  E  F  L  P  F  L  F  V  W  L  I  F  T  R  L  I  H  F  C  E  N  Q  L  A  *  S  A  P  F  R  F  L  E  E  F  L  R  K  S  I  Y  K  V  Q  F  I  D  I  Y  L  G  K  K  G  F  F  F  G  Y  R  *  R  F  *  G  F  L  I  *  R  D  D  G  *  W  I  T  V  *  S  E  F  *  R  *  R  S  V  L  *  C  C  E  G  S  P  E  C  *  S  E  F  *  W  *  G  *  F  K  E  S  *  E  *  C  C  C  *  *  F  S  D  E  D  *  N  E  G  G  C  R  R  *  I  N  E  G  V  T  G  C  C  C  R  A  G  I  G  S  F  A  A  L  *  S  T  A  V  F  E  I  C  Y  S  F  S  S  C  S  I  S  I  K   : D  N  Y  *  G  L  E  D  V  *  C  G  V  S  A  L  L  C  T  W  R  L  M  G  V  F  *  R  M  E  C  L  W  S  W  S  S  I  G  F  G  *  R  *  *  C  S  S  V  L  C  A  L  F  V  R  Y  S  V  V  W  R  L  F  K  G  F  S  Q  N  K  :  A  T  R  *  G  E  *  *  *  L  F  S  G  F  Q  *  *  W  K  *  *  L  *  T  R  E  T  L  L  E  L  F  K  G  A  T  D  V  S  *  P  S  K  *  K  L  S  *  Y  R  W  V  I  I  K  R  Q  </first_frame>
            <second_frame>  F  I  L  S  L  C  F  S  L  S  L  S  L  H  F  Q  L  Q  I  F  N  L  N  P  K  K  I  L  F  L  Y  K  S  T  C  S  L  I  N  I  F  V  S  N  I  L  I  *  V  N  I  C  *  G  L  Y  K  F  S  I  N  F  N  L  S  N  F  Y  H  F  F  L  C  G  *  F  L  L  V  *  F  I  S  A  R  I  N  *  P  N  Q  P  L  F  V  F  L  K  N  F  *  E  N  R  Y  I  K  C  N  L  S  I  Y  I  W  E  K  R  D  F  F  L  D  I  D  R  D  F  R  G  F  *  Y  K  E  M  M  G  S  G  L  Q  F  N  R  S  F  N  G  E  D  R  F  Y  S  A  A  K  A  R  R  N  V  N  R  S  F  N  G  E  D  N  L  R  R  A  K  S  D  V  A  V  S  N  F  P  T  K  T  K  M  K  V  A  A  V  D  E  S  T  K  E  L  P  V  A  A  A  V  P  A  S  E  V  L  P  L  C  N  L  Q  R  F  L  K  S  V  T  P  S  V  P  A  Q  Y  L  S  K  :  T  T  I  R  G  W  R  T  C  D  V  E  F  L  P  Y  Y  V  L  G  D  L  W  E  S  F  K  E  W  S  A  Y  G  A  G  V  P  L  V  L  D  E  G  D  S  A  V  Q  Y  Y  V  P  Y  L  S  G  I  Q  L  Y  G  D  S  S  K  A  S  V  K  T  R :   R  P  G  E  E  S  D  S  D  Y  F  R  D  S  S  S  D  G  S  S  D  S  E  H  E  R  R  C  L  N  Y  S  R  E  Q  R  M  Y  H  S  Q  A  S  E  S  S  L  S  I  D  G  L  S  L  R  D  S </second_frame>
            <third_frame>   L  F  C  H  S  A  F  L  S  L  S  L  S  I  F  N  C  K  F  S  I  *  I  Q  K  K  F  S  F  Y  T  N  P  H  A  L  *  L  I  Y  L  L  V  I  F  *  S  E  S  I  F  A  R  V  Y  I  N  S  P  *  T  S  I  Y  R  I  F  T  I  S  F  C  V  A  N  F  Y  S  F  D  S  F  L  R  E  S  I  S  L  I  S  P  F  S  F  S  *  R  I  S  E  K  I  D  I  *  S  A  I  Y  R  Y  I  F  G  K  K  G  I  F  F  W  I  *  I  E  I  L  G  V  F  N  I  K  R  *  W  V  V  D  Y  S  L  I  G  V  L  T  V  K  I  G  F  I  V  L  R  R  L  A  G  M  L  I  G  V  L  M  V  R  I  I  *  G  E  L  R  V  M  L  L  L  V  I  F  R  R  R  L  K  *  R  W  L  P  S  M  N  Q  R  R  S  Y  R  L  L  L  P  C  R  H  R  K  F  C  R  F  V  I  Y  S  G  F  *  N  L  L  L  L  Q  F  L  L  N  I  Y  Q  R :   Q  L  L  G  V  G  G  R  V  M  W  S  F  C  L  T  M  Y  L  A  T  Y  G  S  L  L  K  N  G  V  L  M  E  L  E  F  H  W  F  W  M  K  V  I  V  Q  F  S  T  M  C  P  I  C  Q  V  F  S  C  M  A  T  L  Q  R  L  Q  S  K  Q   : G  D  Q  V  R  R  V  I  V  T  I  F  G  I  P  V  V  M  E  V  V  T  L  N  T  R  D  V  A  *  I  I  Q  G  S  N  G  C  I  I  A  K  Q  V  K  A  L  L  V  S  M  G  Y  H  *  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59766" stop="59449"/>
                    <exon start="58759" stop="58548"/>
                    <exon start="55950" stop="55779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKEMMGSGLQFNRSFNGEDRFYSAAKARRNVNRSFNGEDNLRRAKSDVAVSNFPTKTKMKVAAVDESTKELPVAAAVPASEVLPLCNLQRFLKSVTPSVPAQYLSKTTIRGWRTCDVEFLPYYVLGDLWESFKEWSAYGAGVPLVLDEGDSAVQYYVPYLSGIQLYGDSSKASVKTRRPGEESDSDYFRDSSSDGSSDSEHERRCLNYSREQRMYHSQASESSLSIDGLSLRDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="71153" PGL_stop="71796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71153" e_stop="71796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="71153" e_stop="71796" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="71796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATTGTACTATAATAATCCTCTGTGAATATGACTAATGACACTAAAAGCAGCCATTTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAG</gDNA_template>
            <first_frame> F  N  C  T  I  I  I  L  C  E  Y  D  *  *  H  *  K  Q  P  F  L  L  Q  F  E  A  *  *  S  S  V  K  K  F  I  G  Q  *  M  Q  L  F  L  F  F  G  *  K  I  I  L  K  I  Q  S  L  C  D  W  R  *  I  H  S  Q  P  F  C  Q  N  Q  L  *  R  I  C  K  A  K  K  S  I  F  L  L  K  S  S  I  F  L  L  K  E  K  T  Q  E  T  P  F  L  F  L  V  Y  F  S  L  S  T  C  L  V  C  I  F  S  G  V  L  K  I  T  D  E  P  R  K  K  V  F  L  D  S  I  I  K  P  L  C  F  M  L  H  F  A  N  R  *  M  F  C  C  *  S  T  V  C  S  V  *  *  I  S  K  L  *  I  W  S  K  N  K  L  S  I  L  Y  *  R  C  S  R  I  L  L  W  V  P  W  I  W  A  K  L  *  *  T  R  V  S  C  C  T  Y  C  W  K  *  V  C  S  *   </first_frame>
            <second_frame>  L  I  V  L  *  *  S  S  V  N  M  T  N  D  T  K  S  S  H  F  Y  C  N  L  K  L  N  N  H  Q  S  K  S  L  L  V  N  K  C  N  F  F  Y  F  L  V  K  K  L  S  *  K  F  N  L  C  V  I  G  G  R  Y  I  V  N  P  F  V  R  T  S  C  R  E  F  V  K  Q  K  N  P  Y  F  C  L  K  V  Q  S  F  F  *  R  K  K  P  K  K  P  L  F  S  F  *  C  I  F  H  Y  L  L  V  *  F  V  Y  F  Q  V  F  S  R  L  Q  M  N  Q  E  K  R  Y  F  L  I  V  S  S  N  L  C  V  L  C  F  I  L  Q  I  D  K  C  S  A  V  D  P  Q  F  V  V  C  N  K  S  V  N  C  R  Y  G  P  R  I  S  F  P  F  Y  I  E  D  V  Q  E  S  Y  C  G  Y  P  G  F  G  L  N  C  S  E  Q  G  F  P  V  V  H  I  A  G  N  E  Y  V  V  E  </second_frame>
            <third_frame>   *  L  Y  Y  N  N  P  L  *  I  *  L  M  T  L  K  A  A  I  F  I  A  I  *  S  L  I  I  I  S  Q  K  V  Y  W  S  I  N  A  T  F  F  I  F  W  L  K  N  Y  L  E  N  S  I  F  V  *  L  E  V  D  T  *  S  T  L  L  S  E  P  V  V  E  N  L  *  S  K  K  I  H  I  F  A  *  K  F  N  L  S  S  K  G  K  N  P  R  N  P  F  S  L  F  S  V  F  F  I  I  Y  L  F  S  L  Y  I  F  R  C  S  Q  D  Y  R  *  T  K  K  K  G  I  S  *  *  Y  H  Q  T  F  V  F  Y  A  S  F  C  K  *  I  N  V  L  L  L  I  H  S  L  *  C  V  I  N  Q  *  I  V  D  M  V  Q  E  *  A  F  H  F  I  L  K  M  F  K  N  L  T  V  G  T  L  D  L  G  *  I  V  V  N  K  G  F  L  L  Y  I  L  L  E  M  S  M  *  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71493" stop="71795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVYFQVFSRLQMNQEKRYFLIVSSNLCVLCFILQIDKCSAVDPQFVVCNKSVNCRYGPRISFPFYIEDVQESYCGYPGFGLNCSEQGFPVVHIAGNEYVVE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71372" stop="71602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RICKAKKSIFLLKSSIFLLKEKTQETPFLFLVYFSLSTCLVCIFSGVLKITDEPRKKVFLDSIIKPLCFMLHFANR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="75487" PGL_stop="76237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75487" e_stop="76237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75487" e_stop="76237" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75487" stop="76237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGGATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</gDNA_template>
            <first_frame> E  I  E  I  L  S  R  L  R  H  R  N  L  V  T  L  Y  G  C  T  S  K  H  S  R  E  L  L  L  V  Y  E  Y  I  P  N  G  T  V  A  D  H  L  N  G  D  R  A  K  D  G  F  L  P  W  P  I  R  M  N  I  A  V  E  T  A  C  A  L  A  Y  L  H  A  S  G  T  I  H  R  D  V  K  T  S  N  I  L  L  D  S  N  C  C  V  K  V  A  D  F  G  L  S  R  L  F  P  N  D  A  T  H  V  S  T  A  P  Q  G  T  A  G  Y  V  D  P  E  Y  H  E  C  Y  Q  L  T  D  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  I  S  S  M  P  A  V  D  I  T  R  S  R  H  E  I  N  L  A  N  L  A  I  N  R  I  Q  R  C  A  F  D  E  L  I  D  P  S  L  G  F  K  S  D  A  Q  V  M  R  M  T  T  S  V  A  E  L  A  F  Q  C  L  Q  L  E  T  D  L  R  P  K  M  D  E  V  L  E  T  L  K  H  I  Q  G  T  Y  T  D  H  I  K  D  E  K  T  N  D  S  I  V  </first_frame>
            <second_frame>  K  L  K  F  S  L  A  Y  G  I  E  I  L  L  P  F  M  V  A  H  Q  S  I  A  V  N  S  S  L  F  M  N  T  F  P  M  E  Q  W  Q  I  T  *  M  G  I  E  Q  R  T  D  S  S  H  G  L  S  A  *  I  L  L  *  K  L  L  V  H  W  L  T  S  M  L  L  A  Q  Y  I  A  M  *  R  L  A  T  Y  S  S  T  A  I  V  V  S  K  L  Q  I  L  G  F  R  D  F  F  Q  M  M  L  L  M  S  Q  L  L  L  K  G  L  L  D  M  L  I  Q  S  I  M  N  V  T  S  S  L  I  K  V  M  F  T  V  S  V  L  S  L  L  N  L  S  H  Q  C  L  L  L  I  L  P  G  V  D  M  K  S  I  W  P  T  *  Q  *  T  G  F  R  D  V  H  L  M  S  *  L  I  H  L  W  D  L  N  Q  M  H  R  L  *  E  *  L  L  Q  *  Q  S  *  H  F  N  A  C  S  L  K  Q  T  *  D  Q  K  W  M  K  Y  *  R  H  L  N  I  Y  K  A  P  I  L  I  T  S  K  M  R  R  R  M  T  Q  L  S </second_frame>
            <third_frame>   N  *  N  S  L  S  P  T  A  S  K  S  C  Y  P  L  W  L  H  I  K  A  *  P  *  T  P  P  C  L  *  I  H  S  Q  W  N  S  G  R  S  P  E  W  G  *  S  K  G  R  I  P  P  M  A  Y  P  H  E  Y  C  C  R  N  C  L  C  I  G  L  P  P  C  F  W  H  N  T  S  R  C  K  D  *  Q  H  T  P  R  Q  Q  L  L  C  Q  S  C  R  F  W  A  F  E  T  F  S  K  *  C  Y  S  C  L  N  C  S  S  R  D  C  W  I  C  *  S  R  V  S  *  M  L  P  A  H  *  *  K  *  C  L  Q  F  R  C  C  P  C  *  T  Y  L  I  N  A  C  C  *  Y  Y  Q  E  S  T  *  N  Q  F  G  Q  L  S  N  K  Q  D  S  E  M  C  I  *  *  A  D  *  S  I  S  G  I  *  I  R  C  T  G  Y  E  N  D  Y  F  S  S  R  A  S  I  S  M  L  A  A  *  N  R  L  E  T  K  N  G  *  S  I  R  D  T  *  T  Y  T  R  H  L  Y  *  S  H  Q  R  *  E  D  E  *  L  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75487" stop="76236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIEILSRLRHRNLVTLYGCTSKHSRELLLVYEYIPNGTVADHLNGDRAKDGFLPWPIRMNIAVETACALAYLHASGTIHRDVKTSNILLDSNCCVKVADFGLSRLFPNDATHVSTAPQGTAGYVDPEYHECYQLTDKSDVYSFGVVLVELISSMPAVDITRSRHEINLANLAINRIQRCAFDELIDPSLGFKSDAQVMRMTTSVAELAFQCLQLETDLRPKMDEVLETLKHIQGTYTDHIKDEKTNDSIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78087" PGL_stop="78744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78087" e_stop="78744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78087" e_stop="78744" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78087" stop="78744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAA</gDNA_template>
            <first_frame> E  N  G  E  W  K  S  L  *  F  *  P  S  L  E  V  C  F  I  F  P  K  S  W  *  Q  N  S  K  F  T  Y  R  K  I  N  Q  I  T  R  L  N  S  N  F  L  L  C  E  T  I  *  S  K  Q  Y  G  F  C  F  L  F  F  V  L  C  S  D  L  *  P  T  S  S  T  R  *  F  Q  I  Q  L  H  R  *  V  R  V  W  R  P  W  S  Y  E  V  S  F  H  K  Y  H  Q  P  *  V  W  I  M  Q  V  *  L  S  Y  *  T  I  S  Y  N  *  T  W  W  T  Q  I  *  C  C  S  E  E  G  *  F  I  P  Y  F  R  S  *  T  S  R  V  L  R  A  Q  K  L  Q  V  F  *  Q  K  L  L  I  S  K  F  P  F  D  F  F  P  N  C  S  *  L  N  L  V  Q  M  Q  T  *  P  *  K  Q  H  P  E  D  K  *  F  F  F  Q  R  F  *  S  I  Y  *  V  *  R  F  *  C  L  L  S  P  S  Q  E  </first_frame>
            <second_frame>  R  M  E  S  G  K  V  F  N  F  D  P  H  L  K  F  V  S  F  F  Q  S  L  G  N  K  I  P  S  S  H  I  E  K  *  T  R  *  Q  G  *  I  P  I  S  C  C  V  R  P  Y  R  V  N  N  M  A  S  V  F  F  F  L  C  C  V  V  I  F  S  L  H  Q  V  L  G  N  S  K  S  N  C  T  D  E  F  E  C  G  G  L  G  A  M  K  F  P  F  T  N  T  T  N  P  E  C  G  L  C  R  F  D  C  H  T  K  P  Y  P  T  I  K  L  G  G  H  K  Y  D  A  V  V  K  R  G  D  L  F  L  I  S  D  P  K  L  Q  E  Y  L  E  H  K  S  C  K  S  F  D  R  N  F  S  F  P  N  S  P  L  I  S  F  Q  I  V  P  N  L  T  L  Y  K  C  K  H  S  H  K  N  N  I  Q  K  T  N  D  S  F  F  K  D  F  D  Q  Y  T  E  C  E  G  F  N  V  Y  Y  H  H  P  K  K </second_frame>
            <third_frame>   E  W  R  V  E  K  S  L  I  L  T  L  T  *  S  L  F  H  F  S  K  V  L  V  T  K  F  Q  V  H  I  *  K  N  K  P  D  N  K  V  K  F  Q  F  L  A  V  *  D  H  I  E  *  T  I  W  L  L  F  S  F  F  C  V  V  *  *  S  L  A  Y  I  K  Y  *  V  I  P  N  P  T  A  P  M  S  S  S  V  E  A  L  E  L  *  S  F  L  S  Q  I  P  P  T  L  S  V  D  Y  A  G  L  I  V  I  L  N  H  I  L  Q  L  N  L  V  D  T  N  M  M  L  *  *  R  G  V  I  Y  S  L  F  Q  I  L  N  F  K  S  T  *  S  T  K  V  A  S  L  L  T  E  T  S  H  F  Q  I  P  L  *  F  L  S  K  L  F  L  T  *  P  C  T  N  A  N  I  A  I  K  T  T  S  R  R  Q  M  I  L  F  S  K  I  L  I  N  I  L  S  V  K  V  L  M  F  T  I  T  I  P  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78211" stop="78744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPISCCVRPYRVNNMASVFFFLCCVVIFSLHQVLGNSKSNCTDEFECGGLGAMKFPFTNTTNPECGLCRFDCHTKPYPTIKLGGHKYDAVVKRGDLFLISDPKLQEYLEHKSCKSFDRNFSFPNSPLISFQIVPNLTLYKCKHSHKNNIQKTNDSFFKDFDQYTECEGFNVYYHHPKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80518" PGL_stop="81318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80575"/>
            <exon e_start="80677" e_stop="81318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.376" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80575" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.376" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80576" i_stop="80676" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80677" e_stop="81318" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80575"/>
              <exon start="80677" stop="81318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346906" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGG : CTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</gDNA_template>
            <first_frame> R  D  F  S  P  T  T  L  L  T  Y  Q  Q  L  L  K  E  H  S   : A  V  D  L  N  R  Q  K  N  E  V  N  L  A  N  L  A  I  N  R  I  Q  R  C  A  F  D  E  L  I  D  P  S  L  G  L  N  S  D  T  L  A  K  K  M  T  I  S  V  A  E  L  A  F  R  C  L  Q  L  D  K  D  I  R  P  T  M  D  E  V  L  D  I  L  R  K  I  Q  G  G  E  F  H  Q  N  E  K  T  F  D  N  L  F  K  S  K  S  V  D  I  P  P  F  S  S  E  S  D  E  V  A  L  L  K  K  V  K  F  I  S  S  S  D  T  N  S  E  V  W  I  S  G  S  T  T  T  S  T  S  E  *  V  S  D  Y  L  C  C  S  E  T  Q  K  I  L  L  H  S  *  Q  I  L  V  K  C  V  A  F  E  G  S  D  D  I  F  E  E  F  E  R  *  I  S  *  L  M  *  F  S  D  F  R  I  Y  *  L  L  A  K  A  F  E  L  I  G  I  L  H  I  I  N  Y  V  H  </first_frame>
            <second_frame>  E  T  F  P  Q  Q  R  Y  S  H  I  N  S  S  S  R  N  T  R  :  L  L  T  *  T  G  K  R  T  R  S  I  W  L  T  W  R  *  T  G  Y  K  D  V  H  L  M  N  *  S  I  H  H  S  G  *  T  Q  I  R  L  L  R  K  *  Q  S  L  S  R  S  *  L  F  D  A  C  N  L  I  R  I  S  G  Q  Q  W  M  K  Y  W  T  F  *  E  R  S  K  V  E  S  F  I  K  M  R  R  H  L  T  I  Y  S  S  L  R  V  L  I  S  L  H  F  P  L  N  Q  M  K  L  H  C  *  R  K  L  S  S  *  V  R  Q  I  L  I  V  R  Y  G  L  V  A  L  P  Q  Q  A  L  V  S  E  *  V  T  I  Y  V  A  R  K  L  K  K  Y  C  C  T  R  D  K  S  L  *  N  V  W  L  L  K  D  L  T  I  F  L  K  S  S  R  G  E  Y  L  S  *  C  S  F  Q  T  S  E  S  T  N  S  *  L  K  H  L  S  L  *  E  F  Y  I  *  *  I  M  F  M </second_frame>
            <third_frame>   R  L  F  P  N  N  V  T  H  I  S  T  A  P  Q  G  T  L  G :   C  *  L  E  Q  A  K  E  R  G  Q  F  G  *  L  G  D  K  Q  D  T  K  M  C  I  *  *  T  D  R  S  I  T  R  A  K  L  R  Y  A  C  *  E  N  D  N  L  C  R  G  A  S  F  S  M  L  A  T  *  *  G  Y  Q  A  N  N  G  *  S  I  G  H  F  K  K  D  P  R  W  R  V  S  S  K  *  E  D  I  *  Q  F  I  Q  V  *  E  C  *  Y  P  S  I  F  L  *  I  R  *  S  C  T  V  K  E  S  *  V  H  K  F  V  R  Y  *  *  *  G  M  D  *  W  L  Y  H  N  K  H  *  *  V  S  E  *  L  S  M  L  L  G  N  S  K  N  I  A  A  L  V  T  N  P  C  K  M  C  G  F  *  R  I  *  R  Y  F  *  R  V  R  E  V  N  I  L  A  N  V  V  F  R  L  Q  N  L  L  T  L  S  *  S  I  *  A  Y  R  N  F  T  Y  N  K  L  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80518" stop="80575"/>
                    <exon start="80677" stop="81098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDFSPTTLLTYQQLLKEHSAVDLNRQKNEVNLANLAINRIQRCAFDELIDPSLGLNSDTLAKKMTISVAELAFRCLQLDKDIRPTMDEVLDILRKIQGGEFHQNEKTFDNLFKSKSVDIPPFSSESDEVALLKKVKFISSSDTNSEVWISGSTTTSTSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86859" PGL_stop="87390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86859" e_stop="87259"/>
            <exon e_start="87346" e_stop="87390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.994" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="86859" e_stop="87259" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87346" e_stop="87390" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86859" stop="87259"/>
              <exon start="87346" stop="87379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87111" stop="87259"/>
              <exon start="87346" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGTTCAATATGTTAATTGCTGGTTTTCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAG : ATGTAAAAACGGCTAGAAGAAAGTTCAGACTGACTCTGGGAGCAG</gDNA_template>
            <first_frame> F  S  R  L  Y  Q  M  Q  Q  H  *  *  *  H  P  K  H  Y  Q  *  D  E  R  S  F  C  W  L  *  N  V  Q  W  L  *  R  L  *  H  I  L  Q  A  S  W  R  *  W  *  T  R  S  S  R  Q  S  S  C  Q  L  F  T  Y  H  I  A  D  T  P  A  I  R  *  W  W  F  V  Q  Y  V  N  C  W  F  S  S  R  M  E  T  V  *  G  L  L  Q  M  S  L  S  R  R  S  M  P  D  *  Y  N  Q  Q  I  S  L  C  I  S  K  *  A  T  *  S  R  S  S  R  E  *  S  T  *  T  R :   C  K  N  G  *  K  K  V  Q  T  D  S  G  S   </first_frame>
            <second_frame>  F  L  D  F  I  K  C  N  S  T  S  S  S  T  P  N  I  T  N  K  M  K  D  H  F  A  G  Y  R  M  Y  N  G  C  K  G  F  S  I  Y  Y  K  L  P  G  G  D  G  K  H  V  R  A  G  N  L  P  A  N  C  S  L  I  T  L  P  I  R  P  P  S  D  D  G  G  L  F  N  M  L  I  A  G  F  L  V  E  W  K  L  S  E  D  C  Y  K  C  H  Y  R  G  G  Q  C  Q  T  N  I  T  N  R  F  H  C  A  Y  P  N  K  P  H  D  Q  G  H  Q  E  N  N  Q  H  E  Q   : D  V  K  T  A  R  R  K  F  R  L  T  L  G  A  </second_frame>
            <third_frame>   F  S  T  L  S  N  A  T  A  L  V  V  A  P  Q  T  L  P  I  R  *  K  I  I  L  L  V  I  E  C  T  M  A  V  K  A  L  A  Y  T  T  S  F  L  E  V  M  V  N  T  F  E  Q  A  I  F  L  P  T  V  H  L  S  H  C  R  Y  A  R  H  Q  M  M  V  V  C  S  I  C  *  L  L  V  F  *  *  N  G  N  C  L  R  T  V  T  N  V  T  I  A  E  V  N  A  R  L  I  *  P  T  D  F  I  V  H  I  Q  I  S  H  M  I  K  V  I  K  R  I  I  N  M  N  K  :  M  *  K  R  L  E  E  S  S  D  *  L  W  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86860" stop="87259"/>
                    <exon start="87346" stop="87389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLDFIKCNSTSSSTPNITNKMKDHFAGYRMYNGCKGFSIYYKLPGGDGKHVRAGNLPANCSLITLPIRPPSDDGGLFNMLIAGFLVEWKLSEDCYKCHYRGGQCQTNITNRFHCAYPNKPHDQGHQENNQHEQDVKTARRKFRLTLGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="95379" PGL_stop="97166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95379" e_stop="95755"/>
            <exon e_start="96610" e_stop="96750"/>
            <exon e_start="96824" e_stop="97166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-intron don_prob="0.581" acc_prob="0.999" e_score="0.986"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="95379" e_stop="95755" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95756" i_stop="96609" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="96610" e_stop="96750" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.581" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="96824" e_stop="97166" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95379" stop="95755"/>
              <exon start="96610" stop="96750"/>
              <exon start="96824" stop="97166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGGCAAATGGAAGAAATGATTCGACTTGTCCAAAGTCGTTTTCATGTGGAAATTTTACTGACCTGAGATTTCCTCTCTCTCTTTCCACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAG : ATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATG : GAAAACTTAAAGATGAACGGGAGATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACGAAGTTGATATCCTTACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATGGTAACAGAGCGAAGGGCGGATTACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</gDNA_template>
            <first_frame> F  R  Q  M  E  E  M  I  R  L  V  Q  S  R  F  H  V  E  I  L  L  T  *  D  F  L  S  L  F  P  H  N  L  N  V  E  *  C  S  Y  L  V  V  M  L  N  R  I  R  E  S  D  F  F  L  R  E  I  G  T  M  L  *  R  C  I  I  H  Q  F  G  L  G  T  R  S  F  K  Q  R  *  R  N  T  S  A  R  L  L  T  K  I  S  P  F  H  T  L  L  L  C  L  S  I  *  L  I  *  *  A  S  T  N  A  S  V  P  V  I  I  P  V  T  L  R  R :   Y  L  *  P  *  C  *  G  R  Q  Y  I  L  W  Y  P  S  F  L  L  F  R  T  *  R  G  H  R  *  F  Q  F  L  *  S  T  W  R  W  R  F  W  N  C  L  L  W :   K  T  *  R  *  T  G  D  C  C  K  A  P  L  R  A  Q  L  Q  A  N  G  A  V  C  K  R  S  *  Y  P  Y  *  T  K  A  Q  Q  S  C  H  P  L  W  M  H  F  K  A  K  P  *  T  T  P  C  L  *  I  Y  S  *  W  H  S  C  *  S  P  S  W  *  Q  S  E  G  R  I  T  Y  L  A  N  P  H  E  H  C  H  R  N  C  W  C  I  G  L  P  A  C  F  *  C  N  T  L  *  C  Q  D  *  *  H  T </first_frame>
            <second_frame>  S  G  K  W  K  K  *  F  D  L  S  K  V  V  F  M  W  K  F  Y  *  P  E  I  S  S  L  S  F  H  T  T  *  M  W  N  N  V  L  I  W  L  *  C  *  T  V  S  E  N  P  T  S  S  *  G  R  L  V  L  C  F  R  D  A  *  F  I  S  L  A  W  G  H  E  A  S  N  N  V  D  E  T  Q  V  P  G  F  *  Q  K  F  L  P  S  I  L  S  F  Y  V  F  P  Y  D  *  Y  N  K  L  L  Q  M  H  Q  Y  Q  *  *  Y  P  *  H  Y  A   : D  I  F  N  H  D  V  E  G  G  S  I  Y  F  G  I  P  V  F  S  Y  S  E  L  E  E  A  T  D  D  F  N  S  S  R  V  L  G  D  G  G  F  G  T  V  Y  Y   : G  K  L  K  D  E  R  E  I  A  V  K  R  L  Y  E  H  N  C  K  R  M  E  Q  F  V  N  E  V  D  I  L  T  R  L  R  H  N  N  L  V  T  L  Y  G  C  T  S  R  R  S  R  E  L  L  L  V  Y  E  Y  I  P  N  G  T  L  A  D  H  L  H  G  N  R  A  K  G  G  L  L  T  W  P  I  R  M  N  I  A  I  E  T  A  G  A  L  A  Y  L  H  A  S  D  V  I  H  C  D  V  K  T  N  N  I   </second_frame>
            <third_frame>   Q  A  N  G  R  N  D  S  T  C  P  K  S  F  S  C  G  N  F  T  D  L  R  F  P  L  S  L  S  T  Q  P  E  C  G  I  M  F  L  S  G  C  D  A  K  P  Y  P  R  I  R  L  L  P  E  G  D  W  Y  Y  A  L  E  M  H  N  S  S  V  W  L  G  D  T  K  L  Q  T  T  L  T  K  H  K  C  Q  A  F  N  K  N  F  S  L  P  Y  S  P  F  M  S  F  H  M  I  N  I  I  S  F  Y  K  C  I  S  T  S  N  N  T  R  N  I  T  Q  :  I  S  L  T  M  M  L  R  E  A  V  Y  T  L  V  S  Q  F  S  L  I  Q  N  L  K  R  P  P  M  I  S  I  P  L  E  Y  L  E  M  E  V  L  E  L  F  T  M  :  E  N  L  K  M  N  G  R  L  L  *  S  A  S  T  S  T  T  A  S  E  W  S  S  L  *  T  K  L  I  S  L  L  D  *  G  T  T  I  L  S  P  S  M  D  A  L  Q  G  E  A  V  N  Y  S  L  S  M  N  I  F  L  M  A  L  L  L  I  T  F  M  V  T  E  R  R  A  D  Y  L  P  G  Q  S  A  *  T  L  P  *  K  L  L  V  H  W  L  T  C  M  L  L  M  *  Y  T  V  M  S  R  L  I  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95381" stop="95755"/>
                    <exon start="96610" stop="96750"/>
                    <exon start="96824" stop="96856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QANGRNDSTCPKSFSCGNFTDLRFPLSLSTQPECGIMFLSGCDAKPYPRIRLLPEGDWYYALEMHNSSVWLGDTKLQTTLTKHKCQAFNKNFSLPYSPFMSFHMINIISFYKCISTSNNTRNITQISLTMMLREAVYTLVSQFSLIQNLKRPPMISIPLEYLEMEVLELFTMENLKMNGRLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95746" stop="95755"/>
                    <exon start="96610" stop="96750"/>
                    <exon start="96824" stop="97164"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYADIFNHDVEGGSIYFGIPVFSYSELEEATDDFNSSRVLGDGGFGTVYYGKLKDEREIAVKRLYEHNCKRMEQFVNEVDILTRLRHNNLVTLYGCTSRRSRELLLVYEYIPNGTLADHLHGNRAKGGLLTWPIRMNIAIETAGALAYLHASDVIHCDVKTNNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="98765" PGL_stop="99251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98765" e_stop="99251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="98765" e_stop="99251" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98765" stop="99251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCTCATATAAAACACACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTGGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACTGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  T  E  S  R  C  T  L  P  D  G  V  R  K  C  D  F  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  H  T  F  L  N  I  F  V  *  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  T  K  Q  R  Q  N  Y  S  K  N  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  I  P  E  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  L  L  R  L  V  K  Q  *  R  T  I  A  *  L  *  D  *  *  L  F  L  T  F  G  V  I  V  F  Y  F  C  F  *  R  L  V  K  T  I  E  </first_frame>
            <second_frame>  L  E  T  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  F  P  A  N  G  K  E  V  *  E  S  D  L  L  I  *  N  T  L  S  *  T  F  L  F  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  L  Q  S  K  G  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  V  V  W  E  Y  I  L  L  F  L  N  C  K  P  F  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  C  K  I  D  N  S  F  L  R  L  V  *  S  C  F  T  F  A  F  E  D  *  *  K  R  L  K </second_frame>
            <third_frame>   W  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  L  F  Q  P  M  A  K  K  F  R  K  V  T  C  S  Y  K  T  H  F  P  K  H  F  C  L  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  Y  K  A  K  A  E  L  F  Q  E  Q  Q  Q  Y  L  E  L  F  V  *  L  F  G  N  I  F  S  C  S  *  T  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  D  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="108975" PGL_stop="109533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108975" e_stop="109533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108975" e_stop="109533" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="109533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</gDNA_template>
            <first_frame> C  P  C  *  A  V  I  I  H  A  C  S  R  L  Q  *  T  *  R  R  D  Q  L  I  *  L  C  N  K  Q  D  F  K  V  C  I  *  *  V  D  R  P  I  P  R  F  S  V  *  W  R  S  *  E  D  D  Y  F  S  S  R  D  I  V  *  M  L  A  T  *  Q  G  H  E  T  *  Y  G  *  S  T  R  N  I  A  R  N  S  A  W  *  V  Y  T  *  *  E  N  R  L  *  R  K  H  E  R  E  C  T  S  P  S  F  T  *  I  R  S  R  C  I  I  E  E  T  Q  Q  Q  V  S  N  F  T  N  F  S  N  S  S  V  D  *  *  L  *  H  K  Y  H  K  Y  I  I  F  I  F  F  W  F  H  S  S  C  R  *  T  K  I  H  R  K  L  S  Q  V  I  T  L  T  E  Y  Y  W  V  L  V  </first_frame>
            <second_frame>  V  L  V  E  L  L  S  S  M  P  A  V  D  F  S  R  H  N  E  E  I  N  L  S  N  Y  A  I  N  R  I  L  R  C  A  F  D  E  L  I  D  P  S  L  G  F  Q  S  D  G  E  V  R  R  M  T  I  S  V  A  E  I  S  F  R  C  L  Q  H  D  K  D  M  R  P  S  M  V  E  V  L  E  T  L  Q  E  I  Q  H  G  E  Y  I  H  D  K  K  I  D  C  D  G  N  T  K  E  S  V  Q  V  P  L  S  P  E  S  E  V  D  V  L  L  K  K  L  N  N  K  F  P  T  S  P  I  S  V  T  Q  V  W  I  S  D  S  S  T  S  I  T  S  T  *  Y  S  S  F  F  G  F  T  V  H  V  D  K  Q  K  Y  T  E  N  *  A  K  S  *  H  *  L  N  I  I  G  Y  L  F </second_frame>
            <third_frame>   S  L  L  S  C  Y  H  P  C  L  Q  *  T  S  V  D  I  T  K  R  S  T  Y  L  T  M  Q  *  T  G  F  *  G  V  H  L  M  S  *  *  T  H  P  S  V  F  S  L  M  E  K  L  G  G  *  L  F  Q  *  P  R  Y  R  L  D  A  C  N  M  T  R  T  *  D  L  V  W  L  K  Y  *  K  H  C  K  K  F  S  M  V  S  I  Y  M  I  R  K  S  I  V  T  E  T  R  K  R  V  Y  K  S  L  F  H  L  N  Q  K  *  M  Y  Y  *  R  N  S  T  T  S  F  Q  L  H  Q  F  Q  *  L  K  C  G  L  V  T  L  A  Q  V  S  Q  V  H  N  I  H  L  F  L  V  S  Q  F  M  *  I  N  K  N  T  Q  K  T  E  P  S  H  N  I  N  *  I  L  L  G  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108976" stop="109431"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVELLSSMPAVDFSRHNEEINLSNYAINRILRCAFDELIDPSLGFQSDGEVRRMTISVAEISFRCLQHDKDMRPSMVEVLETLQEIQHGEYIHDKKIDCDGNTKESVQVPLSPESEVDVLLKKLNNKFPTSPISVTQVWISDSSTSITST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="113021" PGL_stop="113603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113021" e_stop="113603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113021" e_stop="113603" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113021" stop="113603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATA</gDNA_template>
            <first_frame> Y  S  L  R  F  N  L  F  I  *  F  *  L  G  T  E  F  R  K  *  K  K  T  F  E  S  R  G  V  R  M  Y  Q  M  F  F  D  L  V  V  L  N  I  S  C  E  T  D  *  K  G  K  D  A  F  F  L  K  R  T  K  K  G  S  K  S  N  K  L  K  R  G  S  N  N  L  K  T  I  H  K  S  L  F  C  L  F  *  F  S  R  G  N  L  R  S  K  H  L  D  L  T  A  I  S  V  C  S  K  I  R  K  T  *  R  W  K  R  S  C  S  *  E  S  L  *  E  Q  S  Q  A  N  A  A  V  Y  Q  R  N  *  N  S  H  S  P  *  A  S  E  S  C  N  P  L  W  M  Y  I  K  T  *  P  *  T  L  P  C  L  *  V  H  S  *  W  N  N  C  *  S  P  V  R  T  *  S  E  G  *  V  T  N  M  V  Y  </first_frame>
            <second_frame>  I  P  S  V  S  I  C  L  S  S  F  D  *  A  R  S  L  E  S  K  K  R  L  S  N  L  V  V  L  E  C  T  K  C  S  L  I  L  W  S  *  T  Y  H  V  K  R  T  K  K  G  K  M  H  S  F  *  N  G  L  K  R  E  V  S  R  T  N  *  N  E  G  V  I  I  *  R  Q  S  T  K  V  C  S  V  C  F  D  F  R  G  E  I  Y  V  V  S  I  L  I  *  Q  L  F  L  Y  V  L  K  S  G  K  L  K  D  G  K  E  V  A  V  K  S  L  Y  E  N  N  H  R  Q  M  Q  Q  F  I  N  E  I  E  I  L  T  R  L  R  H  P  N  L  V  T  L  Y  G  C  T  S  R  R  S  R  E  L  F  L  V  Y  E  Y  I  P  N  G  T  I  A  D  H  L  Y  G  H  R  A  K  D  K  L  L  T  W  S  I </second_frame>
            <third_frame>   F  P  P  F  Q  F  V  Y  L  V  L  T  R  H  G  V  *  K  V  K  K  D  F  R  I  S  W  C  *  N  V  P  N  V  L  *  S  C  G  L  K  H  I  M  *  N  G  L  K  R  E  R  C  I  L  S  E  T  D  *  K  G  K  *  V  E  Q  I  E  T  R  E  *  *  S  K  D  N  P  Q  K  S  V  L  F  V  L  I  F  E  G  K  F  T  *  *  A  S  *  S  N  S  Y  F  C  M  F  *  N  Q  E  N  L  K  M  E  K  K  L  Q  L  R  V  F  M  R  T  I  T  G  K  C  S  S  L  S  T  K  L  K  F  S  L  A  L  G  I  R  I  L  *  P  F  M  D  V  H  Q  D  V  A  V  N  S  S  L  F  M  S  T  F  L  M  E  Q  L  L  I  T  C  T  D  I  E  R  R  I  S  Y  *  H  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113325" stop="113603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFLYVLKSGKLKDGKEVAVKSLYENNHRQMQQFINEIEILTRLRHPNLVTLYGCTSRRSRELFLVYEYIPNGTIADHLYGHRAKDKLLTWSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="121468" PGL_stop="115149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121468" e_stop="121190"/>
            <exon e_start="120683" e_stop="120588"/>
            <exon e_start="119205" e_stop="119099"/>
            <exon e_start="118639" e_stop="118591"/>
            <exon e_start="118415" e_stop="118303"/>
            <exon e_start="116385" e_stop="116291"/>
            <exon e_start="116049" e_stop="115961"/>
            <exon e_start="115867" e_stop="115773"/>
            <exon e_start="115691" e_stop="115149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121468" e_stop="121190" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120683" e_stop="120588" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.939">
            <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119205" e_stop="119099" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118639" e_stop="118591" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.859">
            <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118303" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.981">
            <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116385" e_stop="116291" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116049" e_stop="115961" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.895">
            <gDNA_intron_boundary i_start="115960" i_stop="115868" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115867" e_stop="115773" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.819" acc_prob="0.962">
            <gDNA_intron_boundary i_start="115772" i_stop="115692" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="115691" e_stop="115149" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121468" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
              <exon start="116385" stop="116291"/>
              <exon start="116049" stop="115961"/>
              <exon start="115867" stop="115773"/>
              <exon start="115691" stop="115149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG : GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG : GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG : GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG : TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG : ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG : TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG : CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG : GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</gDNA_template>
            <first_frame> P  L  T  R  P  R  R  Q  W  T  G  H  S  S  *  K  P  K  R  V  F  V  Y  D  E  T  P  P  G  F  L  L  N  L  Q  R  V  L  *  I  L  E  K  R  V  I  F  S  V  F  F  Q  Y  F  C  C  C  L  G  C  *  G  K  V  F  R  Q  E  *  P  P  P  A  P  A  T  L  R  V  L  E  V  S  Y  V  K  L  V  L  V  L  L  Q  :  V  P  L  L  L  H  L  C  V  H  W  M  L  L  R  Q  D  C  K  Y  M  V  C  L  R  F  L  N  L  L  V  K  :  V  V  S  L  S  Q  A  Y  R  I  Y  *  E  Q  K  V  S  G  D  F  I  E  A  F  H  Q  H  *  Q  L  F  F  R  T  G  R :   C  T  S  Q  F  M  N  I  S  R  I  R  C  I  H  M  :  W  I  A  V  G  S  L  R  L  V  Q  T  C  L  Q  L  R  G  R  G  L  Q  H  P  L  Q  Q  I  H  C  G  L  L  R  P  G  S  * :   H  R  E  *  G  R  V  *  F  L  I  K  V  Y  C  L  L  *  Y  E  *  H  M  K  K  G  S  A  D  C  T   : V  A  S  C  R  H  W  L  G  L  V  M  L  L  S  N  F  Q  H  M  K  S  *  N  R  T  W  Q  K  G  :  P  I  S  I  P  M  N  *  T  L  V  K  *  Q  L  P  L  R  W  Q  K  Y  L  P  L  *  *  L  I  H  M  R :   S  F  V  L  N  F  K  N  K  G  K  *  E  T  Q  R  K  H  I  M  G  L  S  I  V  *  K  R  C  S  N  R  N  V  *  L  H  S  T  G  V  V  E  P  I  F  *  G  P  H  P  L  L  L  L  H  L  P  V  M  K  *  S  T  K  Y  F  N  E  L  Y  F  Q  K  R  I  Q  N  Q  I  L  D  V  N  P  I  R  *  P  K  N  M  E  T  M  M  K  N  Y  N  N  Q  K  A  H  Q  I  R  E  L  L  *  F  H  *  V  T  L  I  I  *  L  L  D  I  D  *  R  C  F  S  F  S  F  F  F  F  L  S  W  K  Q  F  A  T  S  V  C  C  C  T  I  F  F  I  L  Y  L  T  I  L  G  E  E  S  F  I  F  R  S  N  K  E  G  R  G  *  F  P  S   </first_frame>
            <second_frame>  P  *  L  V  Q  D  V  S  G  P  V  I  L  L  E  N  P  K  G  Y  L  Y  M  M  K  P  H  L  G  F  C  *  I  F  K  G  F  F  K  F  L  K  K  E  *  F  F  Q  F  F  F  N  I  F  A  V  V  W  V  V  E  V  K  F  S  G  K  N  D  H  R  R  R  R  R  P  *  E  C  *  R  Y  H  M  *  S  W  C  W  C  F  C  R :   C  H  C  C  Y  I  Y  V  S  I  G  C  Y  *  D  K  T  A  S  T  W  S  A  S  G  F  S  I  C  S  S  R :   *  C  H  C  H  K  L  T  E  Y  T  K  N  R  R  F  Q  G  T  L  S  R  P  F  T  N  I  D  S  S  S  S  E  L  G   : G  V  L  H  S  L  *  T  S  Q  G  F  V  A  F  T  C :   G  *  Q  W  A  A  Y  D  W  C  K  H  A  C  S  C  G  G  G  G  C  N  I  H  Y  N  K  S  I  V  G  C  *  D  P  A  H   : D  T  G  N  E  G  G  C  S  S  L  *  R  Y  I  V  C  F  N  T  N  N  T  *  R  R  D  P  R  I  V  Q  :  W  P  L  A  V  I  G  W  D  *  S  C  C  Y  P  I  S  S  I  *  K  A  E  I  V  L  G  K  K  G :   Q  *  A  Y  Q  *  T  K  L  W  *  S  S  N  C  L  F  D  G  K  N  T  C  L  C  N  D  L  S  T  *   : G  R  S  F  *  T  S  R  T  R  A  S  K  K  L  R  E  S  I  *  W  G  C  R  L  C  K  K  D  V  Q  T  G  T  S  D  C  I  L  P  G  L  W  N  Q  S  S  K  D  H  T  L  C  C  Y  Y  I  Y  Q  L  *  N  D  P  Q  N  T  S  T  S  Y  T  S  R  K  G  F  R  T  K  S  *  T  *  I  P  *  G  S  R  R  T  W  R  Q  *  *  K  I  T  T  I  R  K  H  I  K  *  E  N  S  F  N  S  I  E  *  L  *  *  S  N  C  *  T  L  I  R  D  V  S  L  F  L  F  F  F  F  C  R  G  S  N  L  Q  Q  V  F  A  V  A  Q  F  F  L  F  C  I  L  L  F  W  V  K  K  V  L  Y  F  D  L  I  K  K  G  A  D  S  F  P  L  </second_frame>
            <third_frame>   P  N  S  S  K  T  S  V  D  R  S  F  F  L  K  T  Q  K  G  I  C  I  *  *  N  P  T  W  V  F  A  K  S  S  K  G  S  L  N  S  *  K  K  S  D  F  F  S  F  F  S  I  F  L  L  L  F  G  L  L  R  *  S  F  P  A  R  M  T  T  A  G  A  G  D  L  K  S  V  R  G  I  I  C  E  V  G  A  G  A  S  A   : G  A  I  A  A  T  F  M  C  P  L  D  V  I  K  T  R  L  Q  V  H  G  L  P  Q  V  S  Q  S  A  R  Q   : G  S  V  I  V  T  S  L  Q  N  I  L  R  T  E  G  F  R  G  L  Y  R  G  L  S  P  T  L  T  A  L  L  P  N  W  A  :  V  Y  F  T  V  Y  E  H  L  K  D  S  L  H  S  H   : V  D  S  S  G  Q  L  T  I  G  A  N  M  L  A  A  A  G  A  G  A  A  T  S  I  T  T  N  P  L  W  V  V  K  T  R  L  M  :  T  Q  G  M  R  E  G  V  V  P  Y  K  G  I  L  S  A  L  I  R  I  T  H  E  E  G  I  R  G  L  Y  S :   G  L  L  P  S  L  A  G  I  S  H  V  A  I  Q  F  P  A  Y  E  K  L  K  S  Y  L  A  K  R   : A  N  K  H  T  N  E  L  N  S  G  E  V  A  I  A  S  S  M  A  K  I  L  A  S  V  M  T  Y  P  H  E  :  V  V  R  S  K  L  Q  E  Q  G  Q  V  R  N  S  E  K  A  Y  N  G  V  V  D  C  V  K  K  M  F  K  Q  E  R  L  T  A  F  Y  R  G  C  G  T  N  L  L  R  T  T  P  S  A  V  I  T  F  T  S  Y  E  M  I  H  K  I  L  Q  R  A  I  L  P  E  K  D  S  E  P  N  P  R  R  K  S  H  K  V  A  E  E  H  G  D  N  D  E  K  L  Q  Q  S  E  S  T  S  N  K  R  T  P  L  I  P  L  S  N  S  D  N  L  T  A  R  H  *  L  E  M  F  L  F  F  F  F  F  F  F  V  V  E  A  I  C  N  K  C  L  L  L  H  N  F  F  Y  F  V  S  Y  Y  F  G  *  R  K  F  Y  I  S  I  *  *  R  R  A  R  I  V  S  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121280" stop="121190"/>
                    <exon start="120683" stop="120588"/>
                    <exon start="119205" stop="119099"/>
                    <exon start="118639" stop="118591"/>
                    <exon start="118415" stop="118303"/>
                    <exon start="116385" stop="116291"/>
                    <exon start="116049" stop="115961"/>
                    <exon start="115867" stop="115773"/>
                    <exon start="115691" stop="115314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPARMTTAGAGDLKSVRGIICEVGAGASAGAIAATFMCPLDVIKTRLQVHGLPQVSQSARQGSVIVTSLQNILRTEGFRGLYRGLSPTLTALLPNWAVYFTVYEHLKDSLHSHVDSSGQLTIGANMLAAAGAGAATSITTNPLWVVKTRLMTQGMREGVVPYKGILSALIRITHEEGIRGLYSGLLPSLAGISHVAIQFPAYEKLKSYLAKRANKHTNELNSGEVAIASSMAKILASVMTYPHEVVRSKLQEQGQVRNSEKAYNGVVDCVKKMFKQERLTAFYRGCGTNLLRTTPSAVITFTSYEMIHKILQRAILPEKDSEPNPRRKSHKVAEEHGDNDEKLQQSESTSNKRTPLIPLSNSDNLTARH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="131036" PGL_stop="123055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="123583" e_stop="123055" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTT</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q  V  M  E  S  T  G  V  A  C  I  R  I  D  C  L  L  Y  F  S  L  D  P  M  *  T  R  N  A  L  C  I  G  L  S  F  L  F  C  C  N  M  E  K  A  M  K  I  S  I  F  A  P  W  E  N  W  N  G  T  I  V  T  R  C  C  C  G  C  Y  I  V  S  I   </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  L  W  N  Q  L  V  L  L  A  L  G  *  T  V  Y  S  T  S  P  *  T  L  C  E  H  E  M  L  C  A  S  G  C  P  F  Y  F  V  V  T  W  K  K  Q  *  K  *  A  F  L  H  L  G  K  T  G  M  E  Q  L  *  P  D  V  V  V  V  A  T  L  S  L  S  </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S  Y  G  I  N  W  C  C  L  H  *  D  R  L  S  T  L  L  L  L  R  P  Y  V  N  T  K  C  S  V  H  R  A  V  L  F  I  L  L  *  H  G  K  S  N  E  N  K  H  F  C  T  L  G  K  L  E  W  N  N  C  N  Q  M  L  L  W  L  L  H  C  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="133329" PGL_stop="131808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133329" e_stop="132642"/>
            <exon e_start="131824" e_stop="131808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.236" acc_prob="0.000" e_score="0.949"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="133329" e_stop="132642" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.236" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132641" i_stop="131825" i_length="817"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="131824" e_stop="131808" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133329" stop="132642"/>
              <exon start="131824" stop="131808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323631" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTATTCCCTCTTTTTAACTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAATATGATGAACTTATTG : AAAAAAAAGAAGAAAAA</gDNA_template>
            <first_frame> F  L  F  P  L  F  N  F  S  H  R  K  K  *  E  S  I  E  G  I  K  R  N  N  G  Y  *  Q  K  Y  Y  *  Y  L  F  N  C  H  C  Y  Y  L  Y  F  K  Q  T  C  I  C  T  *  G  N  T  P  P  P  P  P  P  P  T  L  L  A  S  P  R  P  P  P  P  P  P  P  P  R  S  *  G  A  S  I  *  I  F  R  K  K  I  *  N  G  T  R  T  *  T  M  L  *  K  L  L  *  R  Y  I  W  W  *  R  K  S  I  I  C  *  T  R  M  L  *  Y  V  P  *  P  W  *  I  C  I  P  N  F  *  S  S  S  S  S  T  I  S  L  I  S  I  S  T  Y  R  E  *  P  K  L  R  S  L  N  Q  M  L  F  E  L  F  L  R  S  *  K  E  V  I  F  *  S  R  L  Y  G  G  T  F  L  F  L  F  L  I  S  C  H  I  N  F  Y  N  Q  C  M  L  V  I  I  C  I  C  N  I  F  M  K  Y  I  F  T  W  H  E  Y  D  E  L  I   : E  K  K  E  E  K </first_frame>
            <second_frame>  F  Y  S  L  F  L  T  F  L  I  E  K  N  R  K  V  *  R  E  L  K  E  I  M  A  I  N  K  N  I  T  S  I  F  L  I  A  I  V  T  I  F  I  S  S  K  L  A  Y  A  H  E  E  I  P  H  P  H  P  H  P  Q  P  C  S  P  H  P  D  P  H  P  H  P  H  P  Q  G  P  E  G  P  V  F  E  F  S  G  R  K  F  K  M  E  Q  G  H  E  Q  C  Y  E  N  C  Y  K  G  I  F  G  G  E  G  S  P  L  Y  A  E  Q  E  C  Y  D  M  C  H  N  H  G  K  F  A  F  P  T  F  S  P  P  P  P  Q  L  *  V  *  F  Q  F  Q  R  I  E  N  N  L  S  Y  A  R  S  I  K  C  Y  S  S  Y  F  *  G  V  K  K  R  L  Y  F  D  R  D  Y  M  E  A  H  F  Y  F  Y  F  *  F  H  V  I  *  I  F  I  T  N  V  C  W  *  S  Y  V  Y  V  T  F  L  *  N  T  F  S  L  G  M  N  M  M  N  L  L  :  K  K  K  K  K   </second_frame>
            <third_frame>   F  I  P  S  F  *  L  F  S  *  K  K  I  G  K  Y  R  G  N  *  K  K  *  W  L  L  T  K  I  L  L  V  S  F  *  L  P  L  L  L  S  L  F  Q  A  N  L  H  M  H  M  R  K  Y  P  T  P  T  P  T  P  N  L  A  R  L  T  P  T  P  T  P  T  P  T  P  K  V  L  R  G  Q  Y  L  N  F  Q  E  E  N  L  K  W  N  K  D  M  N  N  V  M  K  I  V  I  K  V  Y  L  V  V  K  E  V  H  Y  M  L  N  K  N  A  M  I  C  A  I  T  M  V  N  L  H  S  Q  L  L  V  L  L  L  L  N  Y  K  F  N  F  N  F  N  V  S  R  I  T  *  A  T  L  A  Q  S  N  V  I  R  A  I  F  E  E  L  K  R  G  Y  I  L  I  A  I  I  W  R  H  I  F  I  F  I  F  D  F  M  S  Y  K  F  L  *  P  M  Y  V  G  D  H  M  Y  M  *  H  F  Y  E  I  H  F  H  L  A  *  I  *  *  T  Y  * :   K  K  R  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133277" stop="132894"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RELKEIMAINKNITSIFLIAIVTIFISSKLAYAHEEIPHPHPHPQPCSPHPDPHPHPHPQGPEGPVFEFSGRKFKMEQGHEQCYENCYKGIFGGEGSPLYAEQECYDMCHNHGKFAFPTFSPPPPQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133222" stop="132857"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLLLSLFQANLHMHMRKYPTPTPTPNLARLTPTPTPTPTPKVLRGQYLNFQEENLKWNKDMNNVMKIVIKVYLVVKEVHYMLNKNAMICAITMVNLHSQLLVLLLLNYKFNFNFNVSRIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 218744 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 9510 bytes was the average size of a spliced alignment
$ 29368 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1468 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 20:35:20
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