<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 05:47:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322733" ref_strand="+" ref_description="SGN-U322733        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | aldehyde dehydrogenase, mitochondrial (ALDH3), nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 (Arabidopsis thaliana) gi:19850249:gb:AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:8412041-8414868 REVERSE | Aliases: F5O8.35, F5O8_35(evalue: 2e-174, score=608) genbank/nr: gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+) [Nicotiana tabacum] (evalue: 0, score=716)">
      <seq>ttttttttctccttgaaaacagtgctgtaattttcatctccaataatggcggctcgtgtatttctctctcgttctgttcatctgctatcaaagggaaaaagatcccatcttggcaaaatagctgcttataaatacagcacagcggctgctttcgaggagcccgtcaagcctactgtcaatgtggatcatactaaacttcttatcaacgggcaatttgttgattctgcatcaggaaaaactttcccgactctcgaccccaggacaggggaggtaattgcacatattgctgaaggtgatgcagaagatattaatcgggcagttgctgctgctcgtaaggctttcgatgaaggaccatggcctaggatgactgcttatgaaaggtcaaagatattgctgcgccttgctgatctgattgaaaaacataacgatcaaattgcaacgctcgagacttgggacactgggaagccttatgcacaagctgctaagattgaagtaccaatggttgtacgtctactccgttattatgctggctgggcagataaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatgaaccgatcggggttgctggtcagattatcccatggaattttcctcttctcatgttttcttggaagattggccctgctttagcttgtggtaacacaattgtgctaaagacggctgagcagaccccattatctgcattgtatgtagcaagtctatttcaggaggctggcctgcctgaaggtgttctgaatataatttctggttatggtgccacagctggtgcttctctgtgtagtcatatggatgtggataagcttgcttttactggatcaacagaaaccgggaaaaccatacttgaattggctgctaagagcaatcttaagcctgtgacattggaacttggagggaaatccccttttattgtttgtgaggatgctgatattgatacggccgttgaacaagctcattttgctctcttctttaatcagggccaatgttgttgtgctggttctcggacctatgttcacgagaaggtctatgatgaatttctggagaaggcaaaggcacgcgccttgaaacgagtagttggtgatccgtttaaatcaggcactgagcagggtcctcagattgattcaaaacagttcgataagatcatgaagtacattagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9387" stop="13580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9687" g_stop="9780" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10579" g_stop="10716" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="232" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10826" g_stop="10968" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="375" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11062" g_stop="11215" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="529" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11326" g_stop="11555" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="759" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11556" i_stop="11870" i_length="315">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11871" g_stop="11960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="849" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11961" i_stop="12679" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12680" g_stop="12853" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1023" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12854" i_stop="12944" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12945" g_stop="13082" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1161" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13083" i_stop="13235" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13236" g_stop="13280" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1206" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U322733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9687" e_stop="9780"/>
          <exon e_start="10579" e_stop="10716"/>
          <exon e_start="10826" e_stop="10968"/>
          <exon e_start="11062" e_stop="11215"/>
          <exon e_start="11326" e_stop="11555"/>
          <exon e_start="11871" e_stop="11960"/>
          <exon e_start="12680" e_stop="12853"/>
          <exon e_start="12945" e_stop="13082"/>
          <exon e_start="13236" e_stop="13280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGGGTATTTTTTTTTTTTACTTTTATGTTTCTCTGTTTAATGGATTTTGATTATTTTTGTTGAATTAATTATGGGGTTAAATTAATGAATTTCATGATCTTGTTAATAGAATTTCAAGATTTGGATAAAAAGTTTCAATCTTTTGTGTGTTTTAGCAATAATGTTGGAGCCCCTATATGTGTTTTTAGTGGTTTTGATTTCATGATGCTTAAAGATCTCATCTTTATACAATCAAAAACAAGAAACTTAGAAACATGTGTAGTAAAATTAAACTTTCCTCCCCACTCTATCACTAGGAGGATCGAGTATCAATAGTGTTCACACTTAGCTCGAGAGGTGTTCAACGACTTGACCGAGCCTCACTTCTGTTTTTTTTTCGTTAGGACTTGTTGGTGGTGGGAGGTAACATGTATTCTGTGGAATTAGTCAAGATGCGTAAAAGCTGGCTCGAACGGCATAATCATAAAAAATACATGTGTTTTAGTGGCATGAGTCTTGTTGTACATCTCCATCATGTTAAATTATCATGATTTTTCTTTGATGTAGGTTGTTGAAGAGTTGTAGTCTTTAAATGCAGAAAACTCATTAAAATGGTTGAATATATTGTATAGAGTTTAATGTCTTTTCAACAACCTTGTGCTTATGAACTATTCAAAAGTTGAATATGGATGAATATTCAAGAGTTTTAGTCCTGTTTCACTTTGACTATTCTTAATCTTTGAGGTAGAAATCTTATTGAAATGGTTGAATATTCTGAGATGAAATGTAGAGAACTATAATGAGAAAAACTATTTTGTGTAGGAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAGGTAAATTTGTTAATCCATGTTAATCACCATAATGGATCTCAATTCTCTTCTTTATACTTCTATTTTGGCCCTTTTGTTGTACAATGGAGCTAATTCGTTGAACTTTTAGGAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTATGTATCTACTTTGTATCTCTTAGTGCATTCTTTTGCTATGTTAATGAATGTGCATGCGAGATTTCATCTACTCGTTAATGGTTCATAACTGCAGGAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTGGTATGTTAGATAACCATATGAAGAGCGTAATTGTATTTCGCCACTTCTTTCATGTTGGTTGGCTCCTGAAAATGTTTTATGCACCTGATGTTCTCCTTTTAATTCTGCAGGCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAGGTACCGTTCAAGTTTCCTCTTTTATTTCCGACAAGAGTTGTTCCACACTGCAAGTACACAAAGTCTCATCTTATAGGCATCATATGAAAAGTGAAATCATCAGTTTCGACTTCTCAAATTTTATAAAAATAATCCATTACTTCTTATACTAAGTCACTAAAGTGTCATGAGTTTGTGGTGTTAATAATAATCACAAACTGAAGCATCTACTTGTTAATATGCCACAACTTATTTCTTTTTAATACATTTTTGTTGCCACTTGCTACATGTTTCCAGTGATACGGTATATCTCTAATACTCAGTTATTACTAACAGGCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAGGTAACTCTATCTACTTTTATTCCGTCTTTTAGTCTGTTCTGTGTGAAGATCTGTAGTTTGTGGCTCTTTGGCTTTTATTTCACCATATTGTGTCAATTTATTTGGTTTGACGGATTGCTAGAGACACCACAACTACTCTTAACCTCGTTCATATTCAAGCATTTAATTCATGTATTGGCATTTGTAGCCATTTTTTTCCAAATACTAGTTGTGCCAAATGAGCTAATATCCCTCACATTGATATTATTAGTATTATTTCAAAAAATTAGTATTATTTCAAAAACAACAGTGGAGAAATCTTGTCACTTGAAAAGACTAGTTTTCATATATCAATAAAGAAGGCAAGTTTCACACATATTATGCAGGAAATCTAGTGCATCTACAATAGTTGATCCCATTCCGTATGAAAACTCTGGTAGTATTTGATGCTTAGCGTTACTCTCATTCTTAACCAATTCTGGACTGTATTTATGGGATTATAGAGTTGGTAGCACTTGAATCTTTAGCCAGCCGTGCTATTATATGCAATTTATCAAAACTCTAAGTATTAGGATGGAAGACACGTCTGCACATATGTAGCTTATTCAAGTCTAACGAGTAGATAAGGCAACAGATGACTTGAATTATCTATTTATATCTATGTATAGTTGTACATATGGAAGTAGATACCAGTATATTGCACTGGATTGGACACTGATTCACTTATGTTCCAACAACAGCTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAGGTAATGTTTACTATCTATACTTCTTCGTCGGGTGTTGGTCAGGTTCATGTTAGATACTAACACGGTAACACCTATGACATAAATTTTAAAGGGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAGGTATTCATAATCTCCTAACGAATACTCTTCTTATCTGAAATGCTGGAAACCAATGTATTAAACCTGTATAATGAAAAAAAATAGCATATCTCCTTCCTTTTAAGTCTTCTCATAAGGTAACAATACCGAACCTGAGAGTTTCCTGTCACACAGATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</genome_strand>
        <mrna_strand>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG.............................................................................................................GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT.............................................................................................GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG..............................................................................................................GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAG...........................................................................................................................................................................................................................................................................................................................GCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAG...........................................................................................GGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAG.........................................................................................................................................................ATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324706" ref_strand="+" ref_description="SGN-U324706        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | aldehyde dehydrogenase, mitochondrial (ALDH3), nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 (Arabidopsis thaliana) gi:19850249:gb:AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:8412041-8414868 REVERSE | Aliases: F5O8.35, F5O8_35(evalue: 1e-50, score=195) genbank/nr: gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+) [Nicotiana tabacum] (evalue: 7e-56, score=219)">
      <seq>atgttaaggatgatatgctgattgcacaggatgagatttttggtccagtacagtccatcttaaaatttaaggatcttgatgaagtggtacggagagctaatagttctcggtatggtctagctgctggagtattttcacagaacatcgacactgcaaacacgttggcacgagccttgagagttgggacggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagggaagagaaaagggagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcttaaagcaatttttacaaataaaactaaattatagtgatatcaagttgctctagttcatgatgttgataacgataaatgttgattttctttcaaaacttcttttatatacaaactgcatttgatgtcaattggcaactagttttattacattcacatttctcctcttaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13153" stop="14363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13366" g_stop="13373" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13374" i_stop="13458" i_length="85">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13459" g_stop="13520" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="70" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13609" g_stop="14060" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="522" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="549"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U324706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13366" e_stop="13373"/>
          <exon e_start="13459" e_stop="13520"/>
          <exon e_start="13609" e_stop="14060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAGGTATATACATTTTCACTTTAATAGGCGTGCTTTTTAGTATCAACGTCCATAAATTGTCATAACTAACAAATTGTACAATTGTCAGGATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAAGTATGTGAGAACGATCAAATATATATGTTAACAGTACATGGAGCTGTATTATCGACTTCTATTTATGGTATGTATTTGTTCATTACAGGGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCAATTGGCAACTAGTTTTATTACATTCACATTTCTCCTCTT</genome_strand>
        <mrna_strand>ATGTTAAG.....................................................................................GATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAA........................................................................................GGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCAATTGGCAACTAGTTTTATTACATTCACATTTCTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338069" ref_strand="-" ref_description="SGN-U338069        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | aldehyde dehydrogenase, mitochondrial (ALDH3), nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 (Arabidopsis thaliana) gi:19850249:gb:AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:8412041-8414868 REVERSE | Aliases: F5O8.35, F5O8_35(evalue: 1e-45, score=180) genbank/nr: gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+) [Nicotiana tabacum] (evalue: 1e-52, score=209)">
      <seq>aatttaaggatcttgatgaagtggtacggagagataatagttctcggtatggtctacaggtgggagtactttcaccgcacatcgacactgcaaacacgttggcacgagccttgagagttgggacggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagagaagagaaaaggaagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcttaaagcaatttttacaaataaaactaaattatagtgatatcaagttgctctagttcatgatgttgataacgcataaatgttgattttctttcaaaacttcttttatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13303" stop="14306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13514" g_stop="13520" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88">
            <donor d_prob="0.741" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13609" g_stop="14016" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="416" r_length="409" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U338069" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13514" e_stop="13520"/>
          <exon e_start="13609" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGTATGTGAGAACGATCAAATATATATGTTAACAGTACATGGAGCTGTATTATCGACTTCTATTTATGGTATGTATTTGTTCATTACAGGGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACG-ATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGA</genome_strand>
        <mrna_strand>AATTTAA........................................................................................GGATCTTGATGAAGTGGTACGGAGAGATAATAGTTCTCGGTATGGTCTACAGGTGGGAGTACTTTCACCGCACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGAGAAGAGAAAAGGAAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGCATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312882" ref_strand="+" ref_description="SGN-U312882        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S16 (RPS16C) | chr5:6090051-6090760 REVERSE | Aliases: F20L16.100, F20L16_100(evalue: 1e-69, score=259) genbank/nr: gi|6984222|gb|AAF34799.1| 40S ribosomal protein S16 [Euphorbia esula](evalue: 8e-70, score=266)">
      <seq>gactaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17754" stop="19044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18054" g_stop="18739" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="698"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U312882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18054" e_stop="18739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</genome_strand>
        <mrna_strand>GACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333996" ref_strand="+" ref_description="SGN-U333996        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S16 (RPS16C) | chr5:6090051-6090760 REVERSE | Aliases: F20L16.100, F20L16_100(evalue: 5e-69, score=258) genbank/nr: gi|6984222|gb|AAF34799.1| 40S ribosomal protein S16 [Euphorbia esula](evalue: 3e-69, score=265)">
      <seq>accggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctatacagtgttgttgcttgaaaanaaaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17794" stop="19059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18094" g_stop="18759" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="691"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U333996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18094" e_stop="18759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</genome_strand>
        <mrna_strand>ACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344465" ref_strand="+" ref_description="SGN-U344465        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: transposase(evalue: 6e-73, score=277)">
      <seq>catgtaagttagcaagaacgactcttcccttatggaggaacctttgtttgactaaattcattctatgatgtaaaaatctattgatctgagttcctaacatgttcaagaatcttacttagtggtattcaaatgaacttgtttgcattctccaaatattatatactatataatgggcatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20744" stop="19880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20453" g_stop="20319" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20318" i_stop="20236" i_length="83">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20235" g_stop="20180" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="190" r_length="56" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U344465" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20453" e_stop="20319"/>
          <exon e_start="20235" e_stop="20180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCGCATTAGCAAGAACGACTCTTCCCTTATGGAGGAACATCTGTTTGACTAAATTCATTCTATGATGTAAAAACTTATTGGTCTGAGTTCCTAACATGTTCAAGAATCTTACTTGGAGGTATTCAAATGAAATAATTTCTTTTTCTCTTTATATTTTCGAGTTTGCTAATCAAATTGATAAAGTCTAAAGATGCTAAATTGTGCAATAATTGAACTTGATTGCATTCTCCAAATATTATGTACTATATAATGGGCATATATAAATAAACA</genome_strand>
        <mrna_strand>CATGT-AAGTTAGCAAGAACGACTCTTCCCTTATGGAGGAACCTTTGTTTGACTAAATTCATTCTATGATGTAAAAATCTATTGATCTGAGTTCCTAACATGTTCAAGAATCTTACTTAGTGGTATTCAAATGAA...................................................................................CTTGTTTGCATTCTCCAAATATTATATACTATATAATGGGCATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340983" ref_strand="+" ref_description="SGN-U340983        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative, similar to endoxyloglucan transferase related protein EXGT-A3 GI:2154609 from (Arabidopsis thaliana) | chr1:3479159-3480968 REVERSE | Aliases: T10O24.17, T10O24_17(evalue: 1e-90, score=329) genbank/nr: gi|76786474|gb|ABA54988.1| xyloglucan endotransglycosylase hydrolase [Apium graveolens] (evalue: 6e-107, score=389)">
      <seq>ttttagataaatcttcaggttctggactaatctctaaagagaaatattactatggtttctttaatgctgcactaaaattgcctgctcattttacatcaggagttgttgttgccttttatatgtcaaactcagatgtgtttccacacaaccatgatgaaatagactttgaattgcttggacatgagaagagaagggattgggttttacagacaaatctttatggaaatggaagtgttcacactggaagagaagaaaaattctacctatggtttgatccaactttggattttcatgattataccatcctttggaataatcatcacatagtatttctcgtggacaatgtaccagtaagagaagtggttcacaacacagcaatctcttcagtttacccatcaaagccaatgtcaactatattgacaatatgggatggatcagaatgggcaacacatggaggaaaataccctgtaaactataattatgcaccttttataacaacaatcaaaggtattgaattagaaagttgtgtaaaacaacaacaaaatacatgttctaagagaagtaatacttcaagtttggaccctgttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22039" stop="20315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21831" g_stop="21814" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21813" i_stop="21724" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21723" g_stop="21623" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="119" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21622" i_stop="21314" i_length="309">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21313" g_stop="21105" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="328" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21104" i_stop="20879" i_length="226">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20878" g_stop="20615" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="592" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U340983" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21831" e_stop="21814"/>
          <exon e_start="21723" e_stop="21623"/>
          <exon e_start="21313" e_stop="21105"/>
          <exon e_start="20878" e_stop="20615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGATAAATCTTCAGGTACACTACAACAATTTCATACATGTTTTTTTTTTGGCTTAGTTTATAACTTAGAGTATTAATAACATTTTTTATTTCGTCACTCCACAGGTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTATGTAAGTTTCTATTTTATCCTTAATAATAATCGTGGTGTCTGGATTAATTCATATGTATACGAAGAATATTTTGTGTAACTCTGTCTATCAAGGCGTGGACATATTGGGAAACCTTTTTTTTTTTTTTGCCTTTGATGAACTGTTTTGAACATAAGATATCCTGGTTTTCAACTTACTTCATGCATGCCTGGTAATTAGTACTTCGTATGTCCGTATTCAAAGTACGACTTTTGAAATTTGTGATGTAAGAACAAAGTTTTTGTGGCTATAATTATCTCGTTAAGTATAATTTTTTTTTTCAATTTTCAGATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGTGTAAGTCCGTTTGTTTCAATTTATTTGTCTGATTTTCAAGACAAAGTAATGATATCATAATTCGCTTAAGTTTGAACTGATTATTGGCCTGCTTATTTATTAACCGAGTCCATTTCGAAGGATTGACATCTCTCCAACTAAGCTACACCCCATTATGTTTGGAAACTATGTATACTTTTATCTACTTGGTTTCAAAAGTTGACAATTTTATTGTAAATTTCAACAGATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAGGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAGTACTTCAAGTTTGGACCCTGTTGATGG</genome_strand>
        <mrna_strand>TTTTAGATAAATCTTCAG..........................................................................................GTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTAT.....................................................................................................................................................................................................................................................................................................................ATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGT..................................................................................................................................................................................................................................ATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAAGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAATACTTCAAGTTTGGACCCTGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329097" ref_strand="+" ref_description="SGN-U329097        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tgaaagttcaagacccaagggctgcaggacaagtaagaggagaaaagattcaggcaacagctaaaacaggaaacaggcttcaggtttgcagatcatcattatctgcagtttttttcaaggaatgtactgtactcttatgtataccagccaggccaatggttgaaattctttaagcataaaggaaggtttgcaacatcctatcctataaacttcagggagcagactctgcaccaactctatctattgtttggagaatcgaaagacgctgttttgctctatgacttggtagaagtggcagactttgttccagcatatggcctctctttttgagtttacatacaacaaaaaggccttaatatgccgataagattgtggcatttggggttttatatatacagatttggttaggaggcaggcgtattagtttaaacagctgttgtacatagtaaagcaagtttgaacagttaatgtcatctcatgtatataagtttttatatagactagctttgctgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60585" stop="61705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60885" g_stop="61412" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U329097" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60885" e_stop="61412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCTT</genome_strand>
        <mrna_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332068" ref_strand="+" ref_description="SGN-U332068        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | Ulp1 protease family protein, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to EST gb:N96456 | chr1:3487595-3491259 FORWARD | Aliases: T10O24.20, T10O24_20(evalue: 2e-08, score=55.5) genbank/nr: gi|22329476|ref|NP_172527.2| Ulp1 protease family [Arabidopsis thaliana] gi|20260164|gb|AAM12980.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana] gi|22136240|gb|AAM91198.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana](evalue: 1e-06, score=55.5)">
      <seq>cccaatgcagtgttttggggtaggttacggtctagtattcttggtttagcagcagcatcgatgttatagctctcttttactctcagagtcgaagcttttcctttcgtcttgctctcttttggagtggaattttcgtttttgatctctcgatgttgctgtagttgaatgaaattctaaatggcacggttagttattgattggagtacgctaatagacgacaagcctccggccgagttggtggtcgctactaaagcaactccgatgattagcatagacgacggggaagagcaaaatgacgagttttcaaacctaaggattgatgaactgactgaaaaaattaacaggttcaaaagtttgttgagcaccaaaggccctagattagttgacgggggcgagaaactgaaaacaacaataaaaaagtacgaggctgaatttgagaggagaaaattgctaaactccgataagggaacagatggatgtgccttattggggaggcatcactctagttctattggtgcagctaatggacctaggcagcggtctgcacaatcagcaccacgctcgcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88028" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87728" g_stop="87264" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87263" i_stop="86068" i_length="1196">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86067" g_stop="86019" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="514" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86018" i_stop="85672" i_length="347">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85671" g_stop="85616" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="570" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U332068" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87728" e_stop="87264"/>
          <exon e_start="86067" e_stop="86019"/>
          <exon e_start="85671" e_stop="85616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAGGTGAGGTTCTTAATTAAATTTCGAGCAAAATGGATGTAGAGTATTCATACTGTCGAGTTCAATTAGTTATTTATTGTAATTTAGTTGTTATTGTAGTAGTATTGTTGCTTGAACATCTCTGGATTTTGTATATGTTTGAAGAATTCAGAAGAATTTTGAAACCCTATAAGGGTGCTGCTGAGTCTGTAGTGCCTACAGAACGCGAAATGGATTTTTGGAATTTATTAACATTCTCTAAAAAAGTTACTGGTAATGATCTCGTACTGAAATCATTAAATTTAACCCTCAATAATTTATTGTGCATTATACAAAGTATTTGAAATATAGGAAAGAAATACCATTGAAATATGAACTAATTTCTAAATCAACTTTTGCTTGAGAACTAGTGCAAAAATGTTTTGGTAAATATATTCGATTCATGTATTGACTCCACCTTGTGGAATTTCGAGGAAGGCAATGAATAACTATTAACTTAAGTAATAGCCTATTTGGCGAAGCTTCTAGGAGCATAAGGTGTTTATTTTCTTAAAAAGGTGCTTAATTTGAAGTGGAGTTAATTCCTCAAAAGTTCACTCTAGTTTAGGAAATTCTCTACCGAAATTACTTTTTCTTTAGTTTAGGACAATAAAATCACTGAATAATTCCTTTGTTCCTCAAGTATAATCGCTACCGGTTTAGACATTTAGGCACCATAAATGTTACTAGCATACCATATTTTATTAAATGTTTTCTTTATTTGGTTTGTTTGATCAAGACCCATTTAATTAAAAAATATTTCCTGCAGTATGCTATTTAACCTGGTTGTGGGCTATGTTGAACCACATTTTCATAGCAAATGTGGGGTTTATGTTACTCTGGTATGGATTGATAAGCAAAATCTGCATATTAGTATCTCACAACTATATGGCAGCATTTTAGAATTGCACAATTAGTGTCATCATTTGAGAAAGGCTTTCAAGACACTTGTGAAAATTCACATGAATTGAAAATACTTTTTTTCCCAATGATTTTTGTGGTTTTGATGCATAATCATAATGATGCTGTCAACCATGACAATTGTAGATAATACTTGATAAATGGATGCATAACCGTAGAAATGGCACAAAATTCTTATTTGGAAAGTGTGTTTCCTTGAACAAGCATTTGTCCATTGGTTTATGTAATTGGACATTATTTTCTTACACTATTTTTGACAGGGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTGGTAAGTCTTTTTTTCTTTGTGTGTGGAGGGTAGGGGGTGACTATATTAATCTTTTCATTTATCCCAAAAAAAGGAAAGCGTTAAGCTTTTCTGTTGTCACAAGTTCTTCTACCAACTAAAGGATGTTCATTACTTGGGAAAACATAAATATATAAACGAGTTTCTAGCACTCAAAGTGTACTCACTGTTCACCTTGGAGGTCTTTAGTGCTGATTTTACCCACTGTTCACTCTTGTTTTATGTACAACGTATATGTGCAGCTACATGGAAGTTAGATGAGTAAAAGATTTGAGTTTCTTTACAAAATATTGTATGAAAGGAAACTAATGGTGGAGAAAATTTTGTAGGTGCAGCTAAT-GACCTAGGGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</genome_strand>
        <mrna_strand>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTG...........................................................................................................................................................................................................................................................................................................................................................GTGCAGCTAATGGACCTA-GGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319520" ref_strand="+" ref_description="SGN-U319520        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G60200.1 | Symbol: None | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein, contains Pfam profiles PF01480: PWI domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr1:22204547-22208953 REVERSE | Aliases: T13D8.9, T13D8_9 (evalue: 3e-54, score=209) genbank/nr: gi|50945765|ref|XP_482410.1| putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa (japonica cultivar-group)] >gi|37573054|dbj|BAC98582.1| putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa (japonica cultivar-group)] (evalue: 9e-53, score=211)">
      <seq>gcacgagctcactcccaaacccacaatcttcggctaccaatttccacatccatggcggattcagctccttcgccggaaaattccgccgtcgcaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcagcctcccggagtgaattctgtgccgccgtcgatgattccagcacctacagctggtgctggagctgtccagatgggttcggcgccgcaaattatgccaccttatgctatgcctggacagatggtgagaccatacgctcctatgcctaacggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccggaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcagttggcattattcctcccttgatgcgccctccaatccctatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattaggtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagtggtgataaagggaacaaagaaaatcttgatgctgctaactttggtctggtcactgacgaagataggcaagctgacaaagaggccttggagaagctcaaggatatgatcgaggaaaggctgaagaataaaccattaccacctccacctccacctccacaagcacctaaagatggttctgataactcatatacggaagacctcaaagatggagaaccaggtagagatacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagtctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88705" stop="92598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89006" g_stop="89541" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="541" r_length="536" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90913" g_stop="91166" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="795" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="948" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91862" g_stop="92300" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1387" r_length="439" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1388" polyA_stop="1419"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U319520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1382</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89006" e_stop="89541"/>
          <exon e_start="90913" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTCGAGCACATCTATTTTCTGTGAAGTACCAAAAGTGGATCTTTCTCACCATGGACATATAATTTTCTATGTTATGTAATGTCTGAATATGCGTGTACTACAGTAGATTTACTTTTAGTAGTAAGGGTACTACCCCTTTGTTGGGATCTTGATTCTTGAAATGCTGGCAGCAGACCTTGTTAACAACTGAATGCAAGTAGCCTATACACCAAGGTATCACAATCTTTTCATTTTACCTGCTTGTGTTGTCCTTCCGGCTATTTTTCTGCTGTACATGATGATGTTAATGTTTGACATGTGGAAAGATTGTCTTAAAATACTTTATCATGCTATCAATTGCATTACTGATGATGAGACGCTGGAAGTCTCATCTTAATGTATTCAAACCTTGCAAATCATTCTTGGAATTTGGACAGTTAGATCAGATTTCTTTGCAAGTGGATGCATAAGGTAAGCCCTATTCACATGTTAGTGATTTATGAAATAGACGTTATTATCTTGATCCTTCAGGTTATCTGTTCAGCTCGTGAGTGTTCTCATGCCTATGGTGCCATCTCATAATGCTTGTAATGTTTGGTAATAACATTTGTTCAGCCTTACAGTTTTCTTTTGTGAATGAGACGTAGGTGTTGAGTGGTAGACTTGTCTCTGCTTTGTAAGCTTGGCCTAATAAATATTCCTAGACTCCTTTGTCCATTTATGCAGGAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCAGGTAGAGATACAGCAAAAAATG</genome_strand>
        <mrna_strand>AGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCAGGTAGAGATACAGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327799" ref_strand="+" ref_description="SGN-U327799        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G60200.1 | Symbol: None | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein, contains Pfam profiles PF01480: PWI domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr1:22204547-22208953 REVERSE | Aliases: T13D8.9, T13D8_9 (evalue: 2e-70, score=263) genbank/nr: gi|50945765|ref|XP_482410.1| putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa (japonica cultivar-group)] >gi|37573054|dbj|BAC98582.1| putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-73, score=278)">
      <seq>aagttatttcatatgaggaaaacaatcttgatagccaagataagaatatcgagacagctcattttaatttaagccagggtgaaggagttgcacaaaatgggactgatgaagaatccgtgcgtgcagttactgcaacatcagacatgaggcataatagcaatgcccctacaaaaaggttagaatttggcctctcagggtcaggaaaaagagctgctgtcccttctttcttcaatgcggatgaggatgaggatactcaaaaagaaaagaaaatgaggccattggttccaattgactactcagctgacgaacatatggtccaaccttccatctctgtagcatcgccgactatggctgcagaatttgcaaagcgaatttcaaatgtcaatgctaaagaagagaggcctgatatagagaaggagagacacagaagaactcatgacagatccagccagagggatcgggacaggcatgacgaggagactaaccgaaccagggatgacggtagaaaccttgatcatggcagagttcgggaaactagacctgataaggttaagacacctgataatcagaagcttttagatgcaaagcaattgattgacatgattccaaagaccaaagatgagttgttctcttatgagataaactgggctacttatgacaagaatgcattacatgaaaggatgagaccgtggatcagtaagaagatcactgatttccttggtgaggaggagccgacgctggtagactacatcgtctccagcactcaagaacatgtcaaggcaactgagatgctggagaggctccaaagtatattagatgaagaagctgaaatgtttgttctgaagatgtggaggatgcttatatttgaaatcaagaaagttgagacaggtctggctttaaggcccaaatcctaatttcagttgtgttctcacctgtaacttgaaagcatattcattaactcttgctactctatcaaatcattgtagaattgttttctttcaagcttaaaaatgacaaatagtttaggtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92678" stop="94877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92978" g_stop="93055" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93056" i_stop="93145" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93146" g_stop="93729" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="662" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94207" g_stop="94577" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="1033" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U327799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1033</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92978" e_stop="93055"/>
          <exon e_start="93146" e_stop="93729"/>
          <exon e_start="94207" e_stop="94577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGGGTAACTATTTTAGTTTATTCTTCTTAAGATTTATTATTATGGATTCTGCTCTTATCTTTTTATTTGACATTTGATGTTGAAAAATAACAGGTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAGGTGAGAAATGATCTGTCAGTTTCATTCTCTTGCTTTAGTACATGAGATGGTTTCATTAATTTATATGTTTTATTTTTAGAGTTATATGCTATCTGGTACTTGCAAATTCTAGCGAACACAGCTATGCATTTTCATATTGATGTGTTCCTGCAATTAACATAAAGCAGAGTGGGATGAGATGTGAGAGATAGCATACCCACTAAGTTTCTAGGATTTGGAGGGCTTTTATTACTATTGTGATTGATTTTTAGCCTAATGTCAGCCAAACATTTGATATTGGTTTTGGCCCCCGATATAGCCGGTCTTTCTTTCCAATCACACATTTCCTTTGAGCGCAGTAATAGTAAGAGCAACATGATGGTTCCTTTTAAATTGTTTTTACAAGAAACACAACTGATGAATGAGTTTCGGGTCTTCTATTGTTGGTTTATTGGAGCTGTGAATGTTTATAGTTTATATCTGCTTTGCTTTTCACAGAATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</genome_strand>
        <mrna_strand>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGG..........................................................................................GTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341643" ref_strand="+" ref_description="SGN-U341643        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | metal-dependent phosphohydrolase HD domain-containing protein, similar to SP:Q60710 Interferon-gamma inducible protein MG11 {Mus musculus}; contains Pfam profile PF01966: HD domain | chr5:16122487-16125729 REVERSE | Aliases: MSN9.190, MSN9_190(evalue: 6e-73, score=247) genbank/nr: gi|15242638|ref|NP_198845.1| hypothetical protein [Arabidopsis thaliana](evalue: 4e-71, score=247)">
      <seq>gagattgtagcaacagcaaactcttaccaatgtgcgactccggcgaggctccgttcgacacacggcggtactataagcatattcatgataatgttcatggcaacatctatctcgataagcaagctctgaatttcatcgacactgaacagtttcagaggcttcgtgaattgaagcagctaggtcttggatacatggtttatcctggggctgtgcactctcggtttgagcattccctaggggtctattggctggccagtgacgctgtacatagacttaagacctatcaaggacaggagcttggtattgaatcttttgatgtacagaccgtgaaacttgctggattactacatgatgtgggtcatgggccattcagtcacttgtttgagcgtgaaattcttcctcgggttcgcagcggcattaaatggtcccatgaggatatgtctttgaagatgatagactacattgttgatgagaatagcattgatattgattctggcactttgaagaaagtaaaggaaatgatagttgcttctgaggcaggtaatcagtgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102076" stop="97645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101776" g_stop="101658" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101657" i_stop="100318" i_length="1340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100317" g_stop="100280" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="157" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100279" i_stop="100183" i_length="97">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100182" g_stop="100160" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="180" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100159" i_stop="99229" i_length="931">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99228" g_stop="99122" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="287" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99121" i_stop="99052" i_length="70">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99051" g_stop="99000" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="339" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98999" i_stop="98926" i_length="74">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98925" g_stop="98841" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="424" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98840" i_stop="98390" i_length="451">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98389" g_stop="98299" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="515" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98298" i_stop="97985" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97984" g_stop="97949" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="550" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97948" i_stop="97844" i_length="105">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97843" g_stop="97837" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="557" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U341643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101776" e_stop="101658"/>
          <exon e_start="100317" e_stop="100280"/>
          <exon e_start="100182" e_stop="100160"/>
          <exon e_start="99228" e_stop="99122"/>
          <exon e_start="99051" e_stop="99000"/>
          <exon e_start="98925" e_stop="98841"/>
          <exon e_start="98389" e_stop="98299"/>
          <exon e_start="97984" e_stop="97949"/>
          <exon e_start="97843" e_stop="97837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAGGTACGGTTTCTTATTCGTTTTTTTTTGTTATGCTTTGCATGCTTTGATTCTTATCAAAATCGGAGTTCCTTTTTTTTGCTTTTGAGAAATTTTGAGTTTATTTCTACTGCTTTTGAATATGAAATGAAGAGATAAGTTCGGTGATTCGTATTTAGTTTTTCCAGTTTGAGTGTGAAATTTCTGATTCCCTTGTTCTGTTTTGCACGTTTTAATCGTTTAACTCAGTGTTCGTGTTTGCCTTTTTAGCATAATATTACTTTATTATTTGCATTTCTCTCTCGTGTCCGGTAGTGAGGTTTCGTAGCGTATACTTTATTATTTCGCGTGTCGCTGTTCTTATCAAAATCGGAGTACGTGTTTGTTTTTCAGCACAGTTACTCACTCACTCTTATTTCGGTTCTGCTTTTCGTTTGAATCGAAGAAGTTGATTTGATAACTTAAAATTATTTTTCCTTTTCGAGTGGTGAAATTCCACCACGTATGACTTGTACTCTGCTATAATGCTATACGTTATTTCTGAACTCGGCGTTCATCTTCGTCTTTTTCAAATTATGTCACGTTTTTTTTTGGCTTTTCTGGTGAAGTTCGATTGATAATTTGAAGTGCTTTTCTATTCCTGACCGGAAACCTCATATAAATACAGCATAAAAAATTTAAAAAAGAGATGCGACGTCATGCGGTATGAGAAAAAGGAAAAGTTCGGTGGCTTATACATGTTGGTTGTATGCTATGCGTGTACGCAAATATTTGTGTAGTGGGAATAGTGATGCACTTTCTCTCAATAGTTGCTAGTCAAGTCTATTTGGGCCTATAAAAGGTTTTGACTTCTTTCAAAACCTTGTGTGATTTGTTTACTCTTGTAATTTTGTTGATTCTCTTCTTTTAAAGTAGCATAGCACCTATTCATCTGTCTTGAGTTATTTAAGCGTAACACTCTTCGAATTTCGATAGTTTAATTTTTGAAATAAGATTATATATATGAAAATTATGTAAAAAGTATATTAAGTATTAATGATTGACGATTCAAAATACTTAAATGATATATGAAAAAATTATGATAAAAAATAAATTTGTTTAAATTTTGAAATCAAAGCATGTAAATTGGGACATATTACTTACTAAGTAGATAGGTAAATTTTCGTAGAGCAACAGATTTCCTTCACTAAATTCATCATTCATTGTTTAACGTTTGATTCTAGTGAAAAAGATTTTTTAAGTCAAAACAGAGTTTATATACGGCATGTACGATATATGTTTTCTATAATATCAGCACTTAGTGAAGATATCATATTTTCTATATTTATACTGTATTTAACAACAGTTCCTCCCTTCGATTGCAGCAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAGGCAAGCTTAATTTGTTTGTAAATTGTTTCTTTTCTGCTCCAGACATTTTTGATTGGCTGGAAATAATTCCAATTGTGTTTTCTTGTGTATGTTACAGGCTTCGTGAATTGAAGCAGCTAGGTACGCATATCCTTTATTTCTGATCAAGTTTCCCTTAATGATCAGGTGAATGTGTGTACATGTGAAGCTGTTGTTTAAACAAACTTTTTAATGTTTAGGATAAAGATTTTAGGGTTACTGGTGAAAATAAATATTCGAGGCTTTGCAAATGGATATATTTAAGGCTTGCAGGATAAATTTGGCTGTGTAATGGCACAAGCACATATTTAGTTTCAGCAGCTGTTGAACAAGTTGCAGGTGGATGTATCTGCTTTGATGTCCTTCCATATTAGAGAAGTCCAGTAATAGTTTTCTGAATAGCTGCACATAGTTCCATTTAACTTTACTCTCATGGCCATTTTATCGGCTTATGATGTGGCCATCTGGACTACTAGCTTGATCCCTGACTTTGTTATTTTATCGTCAACTTGCTCAAAGTTTCGCAACAACATATTCTTCAAAAAAAATAAAAAATTAAAGAGGATAAAACTAAAATGAGAAACAAGATTTCTACATATGGTGCAGGTGGTCATTTTCACTTTAAACTCCTTAGGCATCAACAACTAGACTTCATCATATCTTATCTCAATCATCTATATATGCACATTGATTAATGCTTAAAGCAATCAATTTTTTAGATCATAACTGCAAGTTGTCTTTTCCGTACTAATCTTCTTTTAGAAAAGGAGTACTGTGAGGTTCTTGTGTATCATCAATTAAAGTTATTGCTAGCAATTTGGTCCTGTAGCAGGAACAAATATACTTCTAATTGAACTGTATTAGAGCCAGTACACTTGTAAAGGCAGAAACTTTTCTGTTTCTTGGTGTTTCATGTCAGATACAAATAATCTGGATTAGAACTTTTTCAGAAAGTATATGCTCTTTTCCGGTGCTTTGCCAGCATTTGGGATTTAAACTTGTAATATTGACTCAAACTCAATTTCTGTCCTAGGTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAAGTAGGAATATATCCTAATATCTTGGCCCTATATTTGATAAAATGTTTTGATGGATGTGCTGTGGTTGTAGGGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTGGTGAGTCAAACATACCAGCTAAGTTTCATTTTCTCAACAGTATCTGTCCATTGTTCTTACTTGAGTTCATCTAGGATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATGGTAATTGTTAATAAAAACTCTTTCCTTTTCATCCATCAGAACTGGAGGATTGGATGCTTCCCTTATAGAGATATTTGGGCTGCTTGGCTCTATAAGTATATTCCTAAAATTCTTGTTCTTATTGGGCATCAATGCATGATTGTGTAGGCTTTTTTCTACCTATCTCTGCCGCTTTCGTCCATTTTAAGTGAAAGTACTCGTTTGTCCTCTTCATCCAAAATTAGTCCACCACTGAAAGAGTCTGTATGACATTACCATAACAATCACTATTCATGGGTTATATCCTTATTTCCCCAACAGAAATATTTGCAGTATTTGTGGCTTCAAAAGAATCCCATCACTAAAACAAAGCTATTTATGTACCTTTCCAAACATTGAGCAACATATTTTGTTTAAGAATTTCCTTATTTGAGTCTATTTTTCTAATACTTCCTGAATGGAAAAATTTCAGGTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAGGTCGTATGAAAATAACTCATGTTATTTATGATGCCTTTTTGCATCCTTAAATCAAACATTCCCTCCCTCTAAAGATGCAATCTCAGCAGACTAGTATTAGTTGCCCTAAGTTTGTCTGTCTGCATAATTTAGTATGCATTTGGAATGTTATTTTCTTGAGCTGTACCTCATGCTTTCAGAATTATATAATGTAAGATTGAAAACCTTTCACGTTCATTATCATGAGCTTTATTTTCAGTTTGTTTTGGAGCTTTGTTTTAGATTCCTTTGGCTTTCCTCTGAGTGGTATTAAATCTCTCCTCTTTTCTACTCAGGAAATGATAGTTGCTTCTGAGGCAGGTAAATCAGTGGTAAGCATTTTTATGGGAGGATTTGAGTTGATGTGTTAAGATGTTAAAAAAGCTAAGATCTGACACATACTGAATTCTGTTGCTTCATTACTTGCTGTTATACAGAGCTCAA</genome_strand>
        <mrna_strand>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAG.................................................................................................GCTTCGTGAATTGAAGCAGCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAA......................................................................GGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTG..........................................................................GATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAG..........................................................................................................................................................................................................................................................................................................................GAAATGATAGTTGCTTCTGAGGCAGGT-AATCAGTG.........................................................................................................AGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322020" ref_strand="+" ref_description="SGN-U322020        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | radical SAM domain-containing protein, contains Pfam profile PF04055: radical SAM domain protein | chr1:22215749-22218089 REVERSE | Aliases: T13D8.12, T13D8_12(evalue: 5e-160, score=561) genbank/nr: gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb|493519 from E. coli sequence gb|U02965. [Arabidopsis thaliana] (evalue: 4e-158, score=561)">
      <seq>aagaccgtttggtgtgtgtttgaggatgaggcgaattcgtttctccggcggcagcagcagcaactgtgctttgcttggaacaacttttcccttctcaaattacacaaattttccatttaaaaccaaatcttttctaaagctgcttccttcaagaacatctcttatcttcaccactcctcattatcgtttagttacagcagctcaacattcttctacacctcaaaccaacctttctgttgattctggaggtagtggccgaaatgggtatccattgaaggattcaaaagtggttttgaaagggatgagatatactgatcttgagaaatgggttcagtcatatggttataggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtgaggaattagaaggtttgaataaggatttcaggaaaatgttgggtgaacatgctgaatttaagacgttaaacttgaaagatattctgacagcgtctgatggaactaaaaagatgttattcaagttggaagatggtctggtaatagaaactgttctgataccttgtgagcggggcaggaacactgtctgtatatctagtcaagtaggttgtgccatgaattgccagttttgctataccggcagaatgggtctgaagagaaacttatccacttctgagatagttgagcaggctgttttagctcgacgcttgttatccagtgaagttggaccaattagcaacgttgtgtttatgggaatgggagaaccgcttcacaacattgagaatgtcttgaaagctgcagacatattggtagatgaacaagggcttcattttagtcctcgaaaggtcaccgtttctactagtgggcttgtgccccagcttaagcggtttcttcgcgagtccaattgtgctttggcagtcagtttgaatgctacaactgatgaggtcagaagttggatcatgccaattaaccgcaaatttaacttgaacttgcttcttggaacactaagagaggagcttcaatcaaaacataaatacaaagttctgttcgagtatgtaatgcttgccggagttaatgatagtgttgaggatgcaaagagactaatcgatctagtccagggcattccatgcaagattaacctgatcacttttaaccctcattctggatccttcttcaaaccaactacaagagagaagataatcgagttcagagacattcttgctgaagcaggatgtgtggtgctttttcgatggagtagaggagatgatcaaatggctgcctgtggtcagttaggtaaaccaggtgaaatccaagctcccgtgcttcgcgtgccttcccaatttcaagcagtactggaagctgccgcgtgatttcgtgtgctcttttttcaagcatgttcatcctggttttgtccaaaatgtctcacagtttcaaacttcaaagttgtatgctcatgaatcaatcactgatcttgttcaggttagatagtttatgcagtactttttaagatttctttcttcttcaactcagatcttcattaggcgtcctgagaatttggccatgtttcattatgaaattcggaaaaaaagtgaaaaattttcattgtcaatcgcctcctcaacacgtttgtcaattcaccatattatcgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109148" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108848" g_stop="108604" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108522" g_stop="108446" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="322" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107403" g_stop="107301" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="425" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107111" g_stop="107014" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="523" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106921" g_stop="106791" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="654" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106693" g_stop="106585" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="763" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106151" g_stop="105960" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="955" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="105959" i_stop="105872" i_length="88">
            <donor d_prob="0.428" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105871" g_stop="105735" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1092" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="105734" i_stop="103739" i_length="1996">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103738" g_stop="103170" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1093" r_stop="1661" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1664" polyA_stop="1683"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U322020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1661</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108848" e_stop="108604"/>
          <exon e_start="108522" e_stop="108446"/>
          <exon e_start="107403" e_stop="107301"/>
          <exon e_start="107111" e_stop="107014"/>
          <exon e_start="106921" e_stop="106791"/>
          <exon e_start="106693" e_stop="106585"/>
          <exon e_start="106151" e_stop="105960"/>
          <exon e_start="105871" e_stop="105735"/>
          <exon e_start="103738" e_stop="103170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTGGTAAGTACCCTTTACTTTATCTGCTGAGAGGTTCTTCTCTCCTTTGTTCTTGATTCTGTTTTGTTTGGTTGTGTATGGTAGGAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAGGTATGTGTATTTAAGTTGTTGGCTGTGTGTCTTAGTTAGATTAGTATCAAATTGAGTAAAGTTGAAATCTTGATGCTGATTTAAGGTTTAGTATTGTTTTTTTTGTGTTTTTGAGATTAAGCTCGTTCACTTGGTAACTGAATTTCGGCTGTTGTGCTGTATATTTTGGTTGATTGAGTTGATATTTGAGGAAAGATGCAATCTTGATAGTTAATTAGTGATTTAGTCTTGTTTTCTGGTTAAAGATTCAAACTTAGTTTGTGTTCTTGAGATTAAGGCTAATGATATGTTGTCGTGAGGTTTTGGTTAGCCCGACTACTATAGGATAGCTACTTTTAGCTTTTGTACGGTCCCTTCCGCTTTGGTATAGTTTTTGTTGTTAAATTTGACAAGATTCTAGGTGAATTAGAGTGAAGATTCAGAAAGTAGATGAATCCTTTATATATCTTTCTTTGTATGTTGATAGCTTCCAAAAGTCAAGAGGAAATTGAGAAGTTGAAGACTCAAGTAAGAAAGAAGTTTTGAGATGAATGTTTTGGGTGAGGTGAAAAAATTTCTTGGCATGGAGAGAAAAAGAGATAGACATTCAAAGAAACTCTTATTATCCCAGAAATAATACATACTTGAAGAGGGTACTAGCCTCAGCTAATCGGACATGAGCAAAAGTGTGTTTGATGGTATGCGAATTTGGGTTGTACCTGTTTTGTATTATTAACTTTGTTGAAATTTGAGGAAAGCTGCAATTTTGATAGGATTTAGTCCATGTTTGTTTTTCTTGCATAAAGGTTCAAAGTTGTTTCGGATTCATGTGATTAAGCTTTGTGCCATGGTATTCGTACTTAGATTGTTCCTTCCCTGTACTTTAAGTTAACCTTGTAGACTTTTAAGGAAAGTTCCAAGATTGAGAATGGTTTATCTTGTTCTTGGCTTAAACTATAATCTTGTATTGGAATTTGAGATCAATTTTGATATTTGTGTTTGATTTTAATGTTCAATGGCCTACCATAGTTACTAAAACTCGCTCTGCTTTCTTGTTTAACAGAAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAGGTACATAGCTTGTGCAATATGTAGAATGTTGAGTGCCATCTGTTTTGTTTTTGATTCATCACTTAATAAATAGCACTCACAGGATCTTACAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAGGTAAAGCTCTAGCAGCCTTTTAACCTTTTGTTTATTTTTCCAATTTACAGTTCTTGAATTGGTTCCCTTTGTTTAAGTACATGAATCTACTATGCAGAATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATGGTATGTGTATGCTTGAAGTGATTTCCTGAACTGAACATGTAATTTATTTTTGTGTATACATACAGTATTAACCAATAATTAACTTATGGTGTGGTGAATACCCTCGCTTGATGCAATGTGAGCAGCTTTGCTAATTTACCAAATCTAGCCCGCTTTGCTAGTATTGCTGAATTCTGTCTTCCTTGTGACCTTCTCCTAGGGCCATTATTCATGCTTCTCCCTGTTATTTAATCAGGCGTCATGGTTGACTGGAGTTGGTCTTTCTCTTCCACACTTAACAGCTATAATATTATGAAATCCTGTCTGAGACTTTGGCTCTATATTAATGAGGAATTAGAACAAAGACCCTTTGTCCCTTCTTCCTTATCTTTTTCTGTTATACTAAGCAATCAGTATTTGCTATTAGCAAATCTTGACAAATAACTCACTCCAGGGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAGGTATTTCCCTTGAGCAACTCAATTCTTGGGACGACAATGAAGAAACAAATAGCGTCATAATTTGATTCACACTTGTGAAATATTGCAGGTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAGGTATATACCTTGTTTTTTCTTCAATAGTATTTATTTTAGTCCCCAGTGTATTTCTTGAACACAAATAGTCCTTTATATTTGTAAAAAAGAGTGTCACCTATGGTCCCGTACTCCCATCAAACGGAACACACTTAAACTAACTGAAATATAAAAGAACTTAACAGATCCCAGGGGAACTAAACAAATAGACACAGACAAAAAGCCTATTCATCTTCAAGCTTTCTACTGAGACATGCTCTAGTTTCTGCTTTAGTTTGGTGTCCAAATACTCACCATTGTTGTTTCTTTGGTAACCAGTTTATCCATCAGGAGCCTCAAAATTCAAACTGAAAATCCATCTAAACCAAGGCTCCCAAATATATCCACATACCGAGAATTTGAATGCTTTTATATCCGATTTTGACTAAAGATAAGCTGTAGAAAGAAAATGCTTGTAGAATAATACGGGGAGATAGCTGTGAGTGGGTGGTTTCATACTAAATGATGCTTTCTTTCTTCTGCCTCTCTTTAATTTTTTGTTCTTTCATGATTATTTTTGGAATGAGTGTAAATATGTAGGAAAATGAATAAATGATGTTCTGATTTCAGAGATGGAAAAGAAAATTGTTTTTTTGCTGGAGTTCTCCGAGAATTTTACATATGAAAAGTGACTCAAAGAAATTAGAGAGATAGAGATTGGGTGGGGGTGGGGGAGCAGACAGGAGGCCTTTTGATTTTACCAAGTGTTTCTCATGTTTTCTTTCAAGTGGGAAAACCAGCAAGATGATTGATATCTTCATCGTTTTACTATTCAGCACCCTTCCATTAATATGATGAGTGTGCTGTTTGTTTGGATGTGTTCCGTTGGATGTGATAAAAAGTTACCCTCTTTTGCAAAGATAAAGGACTATTTGTCCATGGCTATATAAATAAGTATCAAAATACACCGACAGTCATACATAAGCACAATTGGGGCTTTTCTCATTTCTACAACTTTCCTTTTTTGTAAAGCTATGCCATTGTTATAAATTTATTCATACTGTTCAGTCTAACAAAATTCTATCCCTGGAGAGAGGAAGAGTAATGGCTTTGTGGTTGGTAGAGTTAATCGGTGCCATAGCAGTTAAGTTGTTCTATTTACCTTTTAAGTTGAAAGCAAAAACCAAAAGGTTGCATTTACTGCTCTACTCCTGCAAAATCTGGTCTATAGCGTTACTTCTAATCCTTTCAACTTTTCTACCATGTGTTGTACCAATGTGATTTTTGCAAGATAATGTCGTCATTTTTGTGCATGACAAGTATGTTCAGAAAGAGCATTACTCATGTGTTTCTAGACATCTAGAAATGAATTCTTGATGAAGCTAATAAGAGTAGAAACTAGATGATTATTTAGGAAAACATGGAAGAAACTTGAAATGTATATATAGAGGAAACTGTAAATATACTAAAAATAAATGCTGAGAAGGCCTTTTTTTAAGAAAAAGATAATGAAAAGCATGGGCTGACTTGCAGCATAATTGTACCAACTCTACCATAGTAACCCTACATTTTGCGATTCCATGGTGCATGTCTAATGTGCATGTCCAATCACACTAAACTTCCTCCGGCTTCTGGTTCCCCTCCATGATCCACTGGTTCAACCCATTGCACAGAACAAAAGAGCCGTGGTAACCCTTTCCCAACTTGCTTGGGATTTGTAGTGCAATTGTTGTTGTTTGTTGCAATTCCTCTATCACTTTGCACAGTCATGTATCTATTTGCCGTATACGCCAATGAATGCAGTTTCTTCACTGATTAACCCCTCCTTCCGGCTTCATGGAGAATGACTGTGATGATGTTTTACTCTGATGATTTTGGTGGATAGTTAATGTAGTTTTTTTATCTACTTGCATAGCCCTTGCTTTTCCCCTCTAGATATGAGTTTTACAGAATCAGTTGGCTTGCTCAATTAAGCAGAATATATATGTCTTTGTTTTCTATATCGTGTAAATTCTCATTGTTGAAATTTTATTTGCAGTGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</genome_strand>
        <mrna_strand>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG.................................................................................GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG.............................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG............................................................................................ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG.................................................................................................AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAG........................................................................................GTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333217" ref_strand="+" ref_description="SGN-U333217        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:8409952-8412030 FORWARD | Aliases: F5O8.34, F5O8_34(evalue: 2e-42, score=169) genbank/nr: gi|42562279|ref|NP_173791.2| expressed protein [Arabidopsis thaliana] >gi|25372782|pir||B86372 protein F5O8.34 [imported] - Arabidopsis thaliana >gi|4056461|gb|AAC98034.1| F5O8.34 [Arabidopsis thaliana] (evalue: 1e-40, score=169)">
      <seq>aaaaatatcactctgaaatggtcaatttcttctttgtttttaagagcttttgttgactcactccactcaactttcttgatttgttgaaaattctgaaaaaaaagatcttacttttctgtaatttcttaattttcaagaagtggggttgttgaggaattttatgttttgatattgaatcactttattcagctttgttgattcgttattttcttgaaaattctgaaaaaaaaaaggtgttatctttttataatttctgaaatttcaagatttggggttgttgaggaatttcaagtattaatcttgactcaatttaatatctaaaaaaggtcttaatttcaagattatggcagcattagcacctgggattttgttgaagttattaaatgggatgaaatcaggggtgaaacctacaagtgaacataggagttcacttttgcaggttactgatattgttcctgcagatcttgatgagaagaatttatggccaaagcatggatttttcatcaaggtatcggattcttcgcattccatttatgtaagtcttccagatgagcaagatgatttggttttaagtaataaaatgcagctaggacagttcatttatgtcgatagattagagcccggttcgcctgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112882" stop="111647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112582" g_stop="111947" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U333217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112582" e_stop="111947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</genome_strand>
        <mrna_strand>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331389" ref_strand="+" ref_description="SGN-U331389        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:8402035-8404280 FORWARD | Aliases: F5O8.31, F5O8_31(evalue: 9e-62, score=233) genbank/nr: Polygalacturonase-1(evalue: 2e-63, score=244)">
      <seq>aagtgggtcagctcaattgaggacatgattgacttttccacctcggtgttaggtcaaaacgttgtcctacgaacaactgagaatataaaagggtcaaagggagatattttaattggatcggtgaaaagaaccaacgatgggaaagtaacgaaatcggtatcttgtcatcagagtttgtttccgtatttggtttattattgtcattcggttccaaaggttcgggtttatgaagcggatatattggatccgaattcaaaggctaagattaatcatggtgttgccatttgtcatgtggacacgtcagcatggggagcgaatcatggagcttttacggcactcgggtcgggacccggaaagattgaggtttgtcattggatctttgaaaatgatatgaattgggcagttgctgattaaaatggatcttccaactttcatattcgggtcggatcaattacggttcttgttcaaattatcattgtccaattttaatgcatcttgacctctttttgttttttaattatttattagacttataatgaacttactgtaattactacgatggtaatttcaaaggcctatttacttattgtaatataattacagtaacgcagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118494" stop="117283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118194" g_stop="117573" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U331389" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118194" e_stop="117573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAGTCAAATATT</genome_strand>
        <mrna_strand>AAGTGGGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324468" ref_strand="+" ref_description="SGN-U324468        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:8402035-8404280 FORWARD | Aliases: F5O8.31, F5O8_31(evalue: 1e-46, score=182) genbank/nr: Polygalacturonase-1(evalue: 7e-53, score=209)">
      <seq>cacaaacacaacattctcaaaaaagaaataattaaaatcttcacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacagagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattatggcaataaattgcctcgtggatttgatagtttcaaaaaatacgccgaaaatgataacctccctgttaattctttccggcaatatagccgcggtggcgctggccatgatgatatattttctacttacgcaccaaatggcaatgtaattgatcaaagcttcaacacttatggcacaggccttgctgcttttggcgttggccaattcaaaatctacgggggccaacgtcaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121004" stop="118743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120704" g_stop="120610" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119167" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="600" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119166" i_stop="119100" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119099" g_stop="119043" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="658" r_length="58" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U324468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120704" e_stop="120610"/>
          <exon e_start="119671" e_stop="119167"/>
          <exon e_start="119099" e_stop="119043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAGGTCAGTTCAGATTTAAAAAATTTAAAACTCGTAAATTTTAAATCCTGAATCTATCTCTGCTTCGCAGGCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTAC-GGGGCCAACGTCAATGTAC</genome_strand>
        <mrna_strand>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAG...................................................................GCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTACGGGGGCCAACGTCAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313432" ref_strand="+" ref_description="SGN-U313432        Tomato 200607 #1 [77 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 0, score=763) genbank/nr: Polygalacturonase-1(evalue: 0, score=1273)">
      <seq>attctactcttcaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaagaaatgaaataatatgcaaaatttctaattcgggtcgaaccgggtgtgttacaagaagaagaaaaaaggtaccactggtttgacttttatagtaattattattattatagtcttaatttatattttgagtaattttcgtgtaagtttctctttgccttcattaagtatgaatggctatcaatttacactatttgttatgtaatcattttattgttgactcatatttgagcaaggtaatgtagttattgccagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126101" stop="123049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125801" g_stop="125684" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="123349" g_length="2090"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="2208" r_length="2090" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U313432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125801" e_stop="125684"/>
          <exon e_start="125438" e_stop="123349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</genome_strand>
        <mrna_strand>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313434" ref_strand="+" ref_description="SGN-U313434        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 1e-95, score=345) genbank/nr: gi|1762636|gb|AAB39557.1| AROGP3 (evalue: 2e-154, score=547)">
      <seq>tggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctgnggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaaatcatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124914" stop="123502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124614" g_stop="123802" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U313434" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124614" e_stop="123802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTA</genome_strand>
        <mrna_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGNGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAAATCATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334348" ref_strand="+" ref_description="SGN-U334348        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:8402035-8404280 FORWARD | Aliases: F5O8.31, F5O8_31(evalue: 5e-35, score=132) genbank/nr: Polygalacturonase-1(evalue: 1e-87, score=279)">
      <seq>tctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaaaccnaannannaanttnnncctttttcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126071" stop="124662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125771" g_stop="125684" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124962" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="584" r_length="496" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U334348" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125771" e_stop="125684"/>
          <exon e_start="125438" e_stop="124962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAG-AAA-C-----A--AA--T----C----TCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAAT</genome_strand>
        <mrna_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAAACCNAANNANNAANTTNNNCCTTTTTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313433" ref_strand="+" ref_description="SGN-U313433        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 1e-121, score=433) genbank/nr: gi|1762634|gb|AAB39556.1| AROGP2 (evalue: 0, score=860)">
      <seq>ctctctctatttccacaaaagaaatgcataacaaaattcttgtttcttcctacatcttacttgttcttttgttctcactatcatctttcaatattgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatgtgattagatactggaataaacatgtgtcgaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactctctacacacctccaatccttttgctcttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttcagacgttacggtagaggttctccccgtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatggtcaaaatgcaaatggggagaatcaaaattttacatcttatagtactaatggcaataatcctcaaaacaatttcaaaaactacggcgttggaggtaatggtccatctgagacttttactaactacagagatgaatcgaatgttggtgatgacaagtttagtaactatgttaaggatgcaaatgctggtgaagctaatttcaccaattatggtcaatcgttcaatgaaggtaccgatgtattcattacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaataacacattcaaagattatgtcaaagatacagctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgtgagaagatgttgaagagtggtacaatcatgcctatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="140867" stop="143226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141167" g_stop="141259" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141710" g_stop="142926" g_length="1217"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="1309" r_length="1217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U313433" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1310</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141167" e_stop="141259"/>
          <exon e_start="141710" e_stop="142926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTATTTCACACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAATGTAAGTAACAATCTTTTAACTTTTATGCTCAACATTTATGTTTCTTCAAGTAATCTTGATTGTCATAAATATTCTGAAAAACTTTATATACATACTCATGGGGTGTCAAATGATGGCTCATGGGGTGTCAAATGAAGTAATTCTTATATGTTATATACTTCTTTTCATGTATTTGTTTACCATACTAACAATAAAATTTTCACTACATTCACTACATATTATCCAAGTTGATTGAGATTATATACCAATCAATATTAAAATATGCACTTTATTTATAATTTCTGAATATAAAGTTCTTTATAGACAAGTGAAAATACACGGAGTAGATTGTTACAATGAAGTAATCCTGATTAGAATGTAAAAATTTATATTTGAGTTTTACTCATTTGATTTCGAATGTAAAAATTTATATAGTTAACCAACTAAGGCTATTAGAATTTCTCTTCGTAGATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</genome_strand>
        <mrna_strand>CTCTCTCTATTTC-CACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334349" ref_strand="+" ref_description="SGN-U334349        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:8402035-8404280 FORWARD | Aliases: F5O8.31, F5O8_31(evalue: 7e-32, score=134) genbank/nr: gi|1762634|gb|AAB39556.1| AROGP2 (evalue: 2e-38, score=162)">
      <seq>ttttttttttttttttgatgcgaaatacctgggaattcattataataaatatgcatacagtttattatttcttcttcatggacaaataaaagtgaacatagttacttaggggaggatattactttgtccaaatatagagagattacataacaaatgtaaatcgacagttttaatacattcggttaaaacccaaacaagaaaatgtaaatatttattaaaatcccgtttttccccaggcttaatctgcagttgcccaagtcatgtcattctcaaagatccagtgacaaacctctattttcccgggtcctgacccgagtgcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144061" stop="143145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143768" g_stop="143445" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-U334349" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143768" e_stop="143445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAATATTCATACTATTCGAAATACCTGTGAATTCATTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTGATGCGAAATACCTGGGAATTCATTATAATAAATATGCATACAGTTTATTATTTCTTCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334347" ref_strand="+" ref_description="SGN-U334347        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 6e-38, score=154) genbank/nr: gi|1762636|gb|AAB39557.1| AROGP3 (evalue: 4e-101, score=370)">
      <seq>aaagaaatgcataccaaaattcttcttccttcctgcatcttacttcttcttttgttcacactatcatctttggatgttgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatctgattagatactggaataaacatgtctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcattcactacacacctccaatccttttgctcttcagcaaatctcatgtgtgcgcttgatttgttaccaagtcttgaaaaacacaaaggagatgtccattttgtctcttacggtgacaagaactttaccaattacggtaccaaagaatctggtctcggattcaactctttcaagaactatacagaggaagaaaatttccctgtgaattctttcaggcgctacggtagagattctcctcatgataaatcatttgacaactatggtgcccctggtgggcatacgcctgtccannagttcacagctatagcacaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="145273" stop="147177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145573" g_stop="145647" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145648" i_stop="146376" i_length="729">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146377" g_stop="146877" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="575" r_length="500" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U334347" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145573" e_stop="145647"/>
          <exon e_start="146377" e_stop="146877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGATGTAAGTAACAATCTTTAACTCTTATGCTCATAAATACTTTTTGTTAATTTTGTCTTAAATATTTTCGTTTTTCCTTACAGGAAAATAATTCTTTTTCTTGTTTATCCTTAACATTAACTAACTACTTATGAAAAAAACATTTGTAAATGCATTGAAACTAAGGACCAATTAATATAGGCATTTCAATGAAATACTCATTTTATTCATTATTTCTTAAATGGAGTGCAAAGTTTACCGCTAATAAAAGTAAAAGTGAATGAAGGAAAGTATGATTGTAACTTGATGAAACCCCATGGGGGTGTATCTATGGTAGTCACTACACTAAAATGATCTTTAGTGATAATAACTTACTTGTCGCTAAAAATGTAGTTTAAGTTGCGATTCAGACTCTTTGTAAATGTCCCTAAAGCCTATAGTGATATTGAATCAAATGAGAAATAACTAATGTTAGTAAAAACTTGAGTACTCTTTGTTAATGTGAAGAACTATTGCTGCTAAAAAAGTTGTTTTTATGGTAGTGAGTTCAAGAAAACACAAAATGAGACCAACATAGCTTCAAGAAACTGTCTCTTAAAATTTGACGGGACTTTTCACTTAAACACGTCAAGTAAATCTTATACATTTCAATCAAACGTACTAGACCTCTGTTGTGTCATTTTGATTTGACAGTGTTAACGTTAGAATATACTCAATCGAATATATGATGAAACTGGGGTGGTGTCAATGCAGGTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAAAGTTTCAACAGCTATAGCACAAATACT</genome_strand>
        <mrna_strand>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAAATCATTTGACAACTATGGTGCCCCTGGTGGGCATACGCCTGTCCANNAGTTC-ACAGCTATAGCACAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-EXZfRe/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313434" ref_strand="+" ref_description="SGN-U313434        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 1e-95, score=345) genbank/nr: gi|1762636|gb|AAB39557.1| AROGP3 (evalue: 2e-154, score=547)">
      <seq>tggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctgnggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaaatcatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-AEsQv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146907" stop="148319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147207" g_stop="148019" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-U313434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147207" e_stop="148019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</genome_strand>
        <mrna_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGNGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAAATCATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9687" PGL_stop="13280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9687" e_stop="9780"/>
            <exon e_start="10579" e_stop="10716"/>
            <exon e_start="10826" e_stop="10968"/>
            <exon e_start="11062" e_stop="11215"/>
            <exon e_start="11326" e_stop="11555"/>
            <exon e_start="11871" e_stop="11960"/>
            <exon e_start="12680" e_stop="12853"/>
            <exon e_start="12945" e_stop="13082"/>
            <exon e_start="13236" e_stop="13280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9687" e_stop="9780" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10579" e_stop="10716" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10826" e_stop="10968" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.973">
            <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11062" e_stop="11215" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11326" e_stop="11555" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11556" i_stop="11870" i_length="315"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11871" e_stop="11960" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="11961" i_stop="12679" i_length="719"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12680" e_stop="12853" e_length="174"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.652">
            <gDNA_intron_boundary i_start="12854" i_stop="12944" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12945" e_stop="13082" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13083" i_stop="13235" i_length="153"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13236" e_stop="13280" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9687" stop="9780"/>
              <exon start="10579" stop="10716"/>
              <exon start="10826" stop="10968"/>
              <exon start="11062" stop="11215"/>
              <exon start="11326" stop="11555"/>
              <exon start="11871" stop="11960"/>
              <exon start="12680" stop="12853"/>
              <exon start="12945" stop="13082"/>
              <exon start="13236" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGG : GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG : GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT : GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG : GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAG : GCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAG : CTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAG : GGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAG : ATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</gDNA_template>
            <first_frame> F  F  F  S  L  K  T  V  L  *  F  S  S  P  I  M  A  A  R  V  F  L  S  R  S  V  H  L  L  S  K   : G  K  R  S  H  L  G  K  I  A  A  Y  K  Y  S  T  A  A  A  F  E  E  P  V  K  P  T  V  N  V  D  H  T  K  L  L  I  N  G  Q  F  V  D  S  A  S   : G  K  T  F  P  T  L  D  P  R  T  G  E  V  I  A  H  I  A  E  G  D  A  E  D  I  N  R  A  V  A  A  A  R  K  A  F  D  E  G  P  W  P  R  M  T  A  Y  :  E  R  S  K  I  L  L  R  L  A  D  L  I  E  K  H  N  D  Q  I  A  T  L  E  T  W  D  T  G  K  P  Y  A  Q  A  A  K  I  E  V  P  M  V  V  R  L  L  R  Y  Y  A   : G  W  A  D  K  I  H  G  M  T  I  P  A  D  G  P  Y  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  S  W  K  I  G  P  A  L  A  C  G  N  T  I  V  L  K  T  A  E  Q  T  P  L  S  A  L  Y  V  A  S  L  F  Q  E  :  A  G  L  P  E  G  V  L  N  I  I  S  G  Y  G  A  T  A  G  A  S  L  C  S  H  M  D  V  D  K  :  L  A  F  T  G  S  T  E  T  G  K  T  I  L  E  L  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  V  C  E  D  A  D  I  D  T  A  V  E  Q  A  H  F  A  L  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  Y  V  H  E  K  V  Y  D  E  F  L  E  K  A  K  A  R  A  L  K  R  V  V  G  D  P  F  K  S  G  T  E  Q  G  P  Q  :  I  D  S  K  Q  F  D  K  I  M  K  Y  I  R  S </first_frame>
            <second_frame>  F  F  S  P  *  K  Q  C  C  N  F  H  L  Q  *  W  R  L  V  Y  F  S  L  V  L  F  I  C  Y  Q  R  :  E  K  D  P  I  L  A  K  *  L  L  I  N  T  A  Q  R  L  L  S  R  S  P  S  S  L  L  S  M  W  I  I  L  N  F  L  S  T  G  N  L  L  I  L  H  Q  :  E  K  L  S  R  L  S  T  P  G  Q  G  R  *  L  H  I  L  L  K  V  M  Q  K  I  L  I  G  Q  L  L  L  L  V  R  L  S  M  K  D  H  G  L  G  *  L  L  M :   K  G  Q  R  Y  C  C  A  L  L  I  *  L  K  N  I  T  I  K  L  Q  R  S  R  L  G  T  L  G  S  L  M  H  K  L  L  R  L  K  Y  Q  W  L  Y  V  Y  S  V  I  M  L  :  A  G  Q  I  K  F  M  V  *  P  F  L  P  M  D  H  I  M  F  K  R  C  M  N  R  S  G  L  L  V  R  L  S  H  G  I  F  L  F  S  C  F  L  G  R  L  A  L  L  *  L  V  V  T  Q  L  C  *  R  R  L  S  R  P  H  Y  L  H  C  M  *  Q  V  Y  F  R  R :   L  A  C  L  K  V  F  *  I  *  F  L  V  M  V  P  Q  L  V  L  L  C  V  V  I  W  M  W  I  S :   L  L  L  L  D  Q  Q  K  P  G  K  P  Y  L  N  W  L  L  R  A  I  L  S  L  *  H  W  N  L  E  G  N  P  L  L  L  F  V  R  M  L  I  L  I  R  P  L  N  K  L  I  L  L  S  S  L  I  R :   A  N  V  V  V  L  V  L  G  P  M  F  T  R  R  S  M  M  N  F  W  R  R  Q  R  H  A  P  *  N  E  *  L  V  I  R  L  N  Q  A  L  S  R  V  L  R :   L  I  Q  N  S  S  I  R  S  *  S  T  L  D   </second_frame>
            <third_frame>   F  F  L  L  E  N  S  A  V  I  F  I  S  N  N  G  G  S  C  I  S  L  S  F  C  S  S  A  I  K  G :   K  K  I  P  S  W  Q  N  S  C  L  *  I  Q  H  S  G  C  F  R  G  A  R  Q  A  Y  C  Q  C  G  S  Y  *  T  S  Y  Q  R  A  I  C  *  F  C  I  R :   K  N  F  P  D  S  R  P  Q  D  R  G  G  N  C  T  Y  C  *  R  *  C  R  R  Y  *  S  G  S  C  C  C  S  *  G  F  R  *  R  T  M  A  *  D  D  C  L   : *  K  V  K  D  I  A  A  P  C  *  S  D  *  K  T  *  R  S  N  C  N  A  R  D  L  G  H  W  E  A  L  C  T  S  C  *  D  *  S  T  N  G  C  T  S  T  P  L  L  C  W :   L  G  R  *  N  S  W  Y  D  H  S  C  R  W  T  I  S  C  S  N  V  A  *  T  D  R  G  C  W  S  D  Y  P  M  E  F  S  S  S  H  V  F  L  E  D  W  P  C  F  S  L  W  *  H  N  C  A  K  D  G  *  A  D  P  I  I  C  I  V  C  S  K  S  I  S  G   : G  W  P  A  *  R  C  S  E  Y  N  F  W  L  W  C  H  S  W  C  F  S  V  *  S  Y  G  C  G  *   : A  C  F  Y  W  I  N  R  N  R  E  N  H  T  *  I  G  C  *  E  Q  S  *  A  C  D  I  G  T  W  R  E  I  P  F  Y  C  L  *  G  C  *  Y  *  Y  G  R  *  T  S  S  F  C  S  L  L  *  S   : G  P  M  L  L  C  W  F  S  D  L  C  S  R  E  G  L  *  *  I  S  G  E  G  K  G  T  R  L  E  T  S  S  W  *  S  V  *  I  R  H  *  A  G  S  S   : D  *  F  K  T  V  R  *  D  H  E  V  H  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9717" stop="9780"/>
                    <exon start="10579" stop="10716"/>
                    <exon start="10826" stop="10968"/>
                    <exon start="11062" stop="11215"/>
                    <exon start="11326" stop="11555"/>
                    <exon start="11871" stop="11960"/>
                    <exon start="12680" stop="12853"/>
                    <exon start="12945" stop="13082"/>
                    <exon start="13236" stop="13280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSPIMAARVFLSRSVHLLSKGKRSHLGKIAAYKYSTAAAFEEPVKPTVNVDHTKLLINGQFVDSASGKTFPTLDPRTGEVIAHIAEGDAEDINRAVAAARKAFDEGPWPRMTAYERSKILLRLADLIEKHNDQIATLETWDTGKPYAQAAKIEVPMVVRLLRYYAGWADKIHGMTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFSWKIGPALACGNTIVLKTAEQTPLSALYVASLFQEAGLPEGVLNIISGYGATAGASLCSHMDVDKLAFTGSTETGKTILELAAKSNLKPVTLELGGKSPFIVCEDADIDTAVEQAHFALFFNQGQCCCAGSRTYVHEKVYDEFLEKAKARALKRVVGDPFKSGTEQGPQIDSKQFDKIMKYIRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13366" PGL_stop="14060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13366" e_stop="13373"/>
            <exon e_start="13459" e_stop="13520"/>
            <exon e_start="13609" e_stop="14060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13366" e_stop="13373" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13374" i_stop="13458" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13459" e_stop="13520" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.741" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13609" e_stop="14060" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13366" stop="13373"/>
              <exon start="13459" stop="13520"/>
              <exon start="13609" stop="14060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13514" stop="13520"/>
              <exon start="13609" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338069" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTAAG : GATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAA : GGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCAATTGGCAACTAGTTTTATTACATTCACATTTCTCCTCTT</gDNA_template>
            <first_frame> M  L  R :   M  I  C  *  L  H  R  M  R  F  L  V  Q  Y  S  P  S  *  N  L   : R  I  L  M  K  W  Y  G  E  L  I  V  L  G  M  V  *  L  L  E  Y  F  H  R  T  S  T  L  Q  T  R  W  H  E  P  *  E  L  G  R  Y  G  L  I  A  L  I  R  L  M  L  Q  F  L  L  V  A  I  R  *  V  V  R  E  E  K  R  E  N  T  V  S  K  I  T  C  K  *  R  Q  L  *  H  H  *  R  I  Q  H  G  Y  K  H  N  P  L  K  A  I  F  T  N  K  T  K  L  *  *  Y  Q  V  A  L  V  H  D  V  D  N  D  K  C  *  F  S  F  K  T  S  F  I  Y  K  L  H  L  M  S  I  G  N  *  F  Y  Y  I  H  I  S  P  L </first_frame>
            <second_frame>  C  *   : G  *  Y  A  D  C  T  G  *  D  F  W  S  S  T  V  H  L  K  I  *  :  G  S  *  *  S  G  T  E  S  *  *  F  S  V  W  S  S  C  W  S  I  F  T  E  H  R  H  C  K  H  V  G  T  S  L  E  S  W  D  G  M  D  *  L  L  *  Y  V  *  C  Y  N  S  F  W  W  L  *  D  E  W  S  G  K  R  K  G  R  I  R  S  Q  K  L  L  A  S  K  G  S  C  D  T  I  E  E  S  S  M  V  I  N  I  I  L  L  K  Q  F  L  Q  I  K  L  N  Y  S  D  I  K  L  L  *  F  M  M  L  I  T  I  N  V  D  F  L  S  K  L  L  L  Y  T  N  C  I  *  C  Q  L  A  T  S  F  I  T  F  T  F  L  L   </second_frame>
            <third_frame>   V  K  :  D  D  M  L  I  A  Q  D  E  I  F  G  P  V  Q  S  I  L  K  F  K :   D  L  D  E  V  V  R  R  A  N  S  S  R  Y  G  L  A  A  G  V  F  S  Q  N  I  D  T  A  N  T  L  A  R  A  L  R  V  G  T  V  W  I  N  C  F  D  T  F  D  A  T  I  P  F  G  G  Y  K  M  S  G  Q  G  R  E  K  G  E  Y  G  L  K  N  Y  L  Q  V  K  A  V  V  T  P  L  K  N  P  A  W  L  *  T  *  S  S  *  S  N  F  Y  K  *  N  *  I  I  V  I  S  S  C  S  S  S  *  C  *  *  R  *  M  L  I  F  F  Q  N  F  F  Y  I  Q  T  A  F  D  V  N  W  Q  L  V  L  L  H  S  H  F  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13368" stop="13373"/>
                    <exon start="13459" stop="13520"/>
                    <exon start="13609" stop="13882"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKDDMLIAQDEIFGPVQSILKFKDLDEVVRRANSSRYGLAAGVFSQNIDTANTLARALRVGTVWINCFDTFDATIPFGGYKMSGQGREKGEYGLKNYLQVKAVVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18054" PGL_stop="18759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18054" e_stop="18759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18054" e_stop="18759" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18054" stop="18739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18094" stop="18759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</gDNA_template>
            <first_frame> D  *  A  K  *  S  K  Q  E  K  C  R  R  H  R  R  Q  W  S  P  C  N  V  S  G  G  R  R  R  R  W  R  *  H  T  A  S  V  V  V  V  *  S  K  S  T  E  F  L  S  S  L  F  S  R  R  F  S  G  T  K  L  S  S  Q  S  S  F  *  V  V  N  D  S  P  E  L  T  *  E  S  E  S  K  E  E  V  I  L  L  R  S  T  L  S  V  S  Q  L  Q  R  L  L  L  L  S  T  R  S  T  L  M  S  R  R  R  R  R  L  R  I  F  *  F  D  T  I  G  L  C  L  L  L  I  L  D  V  V  S  L  R  S  L  V  V  V  V  L  V  L  G  S  R  N  L  T  V  K  F  T  V  Y  V  L  L  L  L  V  L  C  N  F  E  Y  G  F  D  F  R  D  Y  Y  Y  Y  L  F  T  I  K  A  I  *  V  S  F  G  F  *  *  T  V  M  *  L  F  Y  G  G  M  I  L  C  Y  V  C  I  E  I  C  F  S  N  A  *  Y  K  L  M  L  Y  S  V  V  A  *  </first_frame>
            <second_frame>  T  K  Q  N  N  Q  S  R  R  N  A  G  G  T  G  D  S  G  V  R  A  M  F  R  A  E  E  D  G  G  G  G  D  T  L  Q  A  W  S  W  F  D  Q  N  Q  R  S  S  Y  R  A  C  S  A  G  D  S  P  V  Q  S  F  R  A  N  P  P  S  R  S  S  T  I  R  R  S  *  H  E  N  P  S  Q  R  R  R  S  Y  F  S  D  L  R  Y  P  S  V  N  C  K  G  S  C  C  F  L  P  E  V  R  *  *  A  D  E  E  G  D  *  G  Y  S  D  S  I  R  *  D  F  A  C  C  *  S  *  T  L  *  A  *  E  V  W  W  S  W  C  S  F  *  V  P  E  I  L  P  L  N  L  R  Y  M  F  Y  C  Y  W  C  S  A  I  L  S  M  V  S  I  L  G  I  I  I  I  I  Y  S  P  L  K  L  S  E  *  A  L  D  F  D  E  P  *  C  S  C  F  T  V  E  *  F  Y  V  M  Y  A  L  K  Y  V  F  P  M  H  N  I  N  L  C  Y  T  V  L  L  L  E </second_frame>
            <third_frame>   L  S  K  I  I  K  A  G  E  M  Q  A  A  P  A  T  V  E  S  V  Q  C  F  G  R  K  K  T  A  V  A  V  T  H  C  K  R  G  R  G  L  I  K  I  N  G  V  P  I  E  L  V  Q  P  E  I  L  R  Y  K  A  F  E  P  I  L  L  L  G  R  Q  R  F  A  G  V  D  M  R  I  R  V  K  G  G  G  H  T  S  Q  I  Y  A  I  R  Q  S  I  A  K  A  L  V  A  F  Y  Q  K  Y  V  D  E  Q  T  K  K  E  I  K  D  I  L  I  R  Y  D  R  T  L  L  V  A  D  P  R  R  C  E  P  K  K  F  G  G  R  G  A  R  S  R  F  Q  K  S  Y  R  *  I  Y  G  I  C  S  I  A  I  G  A  L  Q  F  *  V  W  F  R  F  *  G  L  L  L  L  S  I  H  H  *  S  Y  L  S  K  L  W  I  L  M  N  R  N  V  V  V  L  R  W  N  D  F  M  L  C  M  H  *  N  M  F  F  Q  C  I  I  *  T  Y  A  I  Q  C  C  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18056" stop="18526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKIIKAGEMQAAPATVESVQCFGRKKTAVAVTHCKRGRGLIKINGVPIELVQPEILRYKAFEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20453" PGL_stop="20180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20453" e_stop="20319"/>
            <exon e_start="20235" e_stop="20180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.904"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="20453" e_stop="20319" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20318" i_stop="20236" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.893">
            <gDNA_exon_boundary e_start="20235" e_stop="20180" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20453" stop="20319"/>
              <exon start="20235" stop="20180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCTCGCATTAGCAAGAACGACTCTTCCCTTATGGAGGAACATCTGTTTGACTAAATTCATTCTATGATGTAAAAACTTATTGGTCTGAGTTCCTAACATGTTCAAGAATCTTACTTGGAGGTATTCAAATGAA : CTTGATTGCATTCTCCAAATATTATGTACTATATAATGGGCATATATAAATAAACA</gDNA_template>
            <first_frame> Y  L  A  L  A  R  T  T  L  P  L  W  R  N  I  C  L  T  K  F  I  L  *  C  K  N  L  L  V  *  V  P  N  M  F  K  N  L  T  W  R  Y  S  N  E  :  L  D  C  I  L  Q  I  L  C  T  I  *  W  A  Y  I  N  K   </first_frame>
            <second_frame>  I  S  H  *  Q  E  R  L  F  P  Y  G  G  T  S  V  *  L  N  S  F  Y  D  V  K  T  Y  W  S  E  F  L  T  C  S  R  I  L  L  G  G  I  Q  M  N :   L  I  A  F  S  K  Y  Y  V  L  Y  N  G  H  I  *  I  N  </second_frame>
            <third_frame>   S  R  I  S  K  N  D  S  S  L  M  E  E  H  L  F  D  *  I  H  S  M  M  *  K  L  I  G  L  S  S  *  H  V  Q  E  S  Y  L  E  V  F  K  *   : T  *  L  H  S  P  N  I  M  Y  Y  I  M  G  I  Y  K  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0261K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21831" PGL_stop="20615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21831" e_stop="21814"/>
            <exon e_start="21723" e_stop="21623"/>
            <exon e_start="21313" e_stop="21105"/>
            <exon e_start="20878" e_stop="20615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.421" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21831" e_stop="21814" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="21813" i_stop="21724" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21723" e_stop="21623" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.421" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21622" i_stop="21314" i_length="309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21313" e_stop="21105" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.780" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21104" i_stop="20879" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="20878" e_stop="20615" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21831" stop="21814"/>
              <exon start="21723" stop="21623"/>
              <exon start="21313" stop="21105"/>
              <exon start="20878" stop="20615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAGATAAATCTTCAG : GTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTAT : ATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGT : ATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAGGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAGTACTTCAAGTTTGGACCCTGTTGATGG</gDNA_template>
            <first_frame> F  *  I  N  L  Q  :  V  L  D  *  S  L  K  R  N  I  T  M  V  S  L  M  L  H  *  N  C  L  L  I  L  H  Q  E  L  L  L  P  F  I :   C  Q  T  Q  M  C  F  H  T  T  M  M  K  *  T  L  N  C  L  D  M  R  R  E  G  I  G  F  Y  R  Q  I  F  M  E  M  E  V  F  T  L  E  E  K  K  N  S  T  Y  G  L  I  Q  L  W  I  F  M  I  I  P  S  F  G  I  I  I  T  *   : Y  F  S  W  T  M  Y  Q  *  E  K  W  F  T  T  Q  Q  S  L  Q  F  T  H  Q  S  Q  C  Q  L  Y  *  Q  Y  G  M  D  Q  N  G  Q  H  M  E  E  N  T  L  *  T  I  I  M  H  L  L  *  Q  Q  S  K  V  L  N  *  K  V  V  *  N  N  N  K  I  H  V  L  R  E  V  V  L  Q  V  W  T  L  L  M  </first_frame>
            <second_frame>  F  R  *  I  F  R :   F  W  T  N  L  *  R  E  I  L  L  W  F  L  *  C  C  T  K  I  A  C  S  F  Y  I  R  S  C  C  C  L  L   : Y  V  K  L  R  C  V  S  T  Q  P  *  *  N  R  L  *  I  A  W  T  *  E  E  K  G  L  G  F  T  D  K  S  L  W  K  W  K  C  S  H  W  K  R  R  K  I  L  P  M  V  *  S  N  F  G  F  S  *  L  Y  H  P  L  E  *  S  S  H  S  :  I  S  R  G  Q  C  T  S  K  R  S  G  S  Q  H  S  N  L  F  S  L  P  I  K  A  N  V  N  Y  I  D  N  M  G  W  I  R  M  G  N  T  W  R  K  I  P  C  K  L  *  L  C  T  F  Y  N  N  N  Q  R  Y  *  I  R  R  L  C  K  T  T  T  K  Y  M  F  *  E  K  *  Y  F  K  F  G  P  C  *  W </second_frame>
            <third_frame>   L  D  K  S  S   : G  S  G  L  I  S  K  E  K  Y  Y  Y  G  F  F  N  A  A  L  K  L  P  A  H  F  T  S  G  V  V  V  A  F  Y  :  M  S  N  S  D  V  F  P  H  N  H  D  E  I  D  F  E  L  L  G  H  E  K  R  R  D  W  V  L  Q  T  N  L  Y  G  N  G  S  V  H  T  G  R  E  E  K  F  Y  L  W  F  D  P  T  L  D  F  H  D  Y  T  I  L  W  N  N  H  H  I  V :   F  L  V  D  N  V  P  V  R  E  V  V  H  N  T  A  I  S  S  V  Y  P  S  K  P  M  S  T  I  L  T  I  W  D  G  S  E  W  A  T  H  G  G  K  Y  P  V  N  Y  N  Y  A  P  F  I  T  T  I  K  G  I  E  L  E  G  C  V  K  Q  Q  Q  N  T  C  S  K  R  S  S  T  S  S  L  D  P  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21829" stop="21814"/>
                    <exon start="21723" stop="21623"/>
                    <exon start="21313" stop="21105"/>
                    <exon start="20878" stop="20617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKSSGSGLISKEKYYYGFFNAALKLPAHFTSGVVVAFYMSNSDVFPHNHDEIDFELLGHEKRRDWVLQTNLYGNGSVHTGREEKFYLWFDPTLDFHDYTILWNNHHIVFLVDNVPVREVVHNTAISSVYPSKPMSTILTIWDGSEWATHGGKYPVNYNYAPFITTIKGIELEGCVKQQQNTCSKRSSTSSLDPVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="60885" PGL_stop="61412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60885" e_stop="61412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="60885" e_stop="61412" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60885" stop="61412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCTT</gDNA_template>
            <first_frame> *  K  F  K  T  Q  G  L  Q  D  K  *  E  E  K  R  F  R  Q  Q  L  K  Q  E  T  G  F  R  F  A  D  H  H  Y  L  Q  F  F  S  R  N  V  L  Y  S  Y  V  Y  Q  P  G  Q  W  L  K  F  F  K  H  K  G  R  F  A  T  S  Y  P  I  N  F  R  E  Q  T  L  H  Q  L  Y  L  L  F  G  E  S  K  D  A  V  L  L  Y  D  L  V  E  V  A  D  F  V  P  A  Y  G  L  S  F  *  V  Y  I  Q  Q  K  G  L  N  M  P  I  R  L  W  H  L  G  F  Y  I  Y  R  F  G  *  E  A  G  V  L  V  *  T  A  V  V  H  S  K  A  S  L  N  S  *  C  H  L  M  Y  I  S  F  Y  I  D  *  L  C  C  S  S  D  Y  L </first_frame>
            <second_frame>  E  S  S  R  P  K  G  C  R  T  S  K  R  R  K  D  S  G  N  S  *  N  R  K  Q  A  S  G  L  Q  I  I  I  I  C  S  F  F  Q  G  M  Y  C  T  L  M  Y  T  S  Q  A  N  G  *  N  S  L  S  I  K  E  G  L  Q  H  P  I  L  *  T  S  G  S  R  L  C  T  N  S  I  Y  C  L  E  N  R  K  T  L  F  C  S  M  T  W  *  K  W  Q  T  L  F  Q  H  M  A  S  L  F  E  F  T  Y  N  K  K  A  L  I  C  R  *  D  C  G  I  W  G  F  I  Y  T  D  L  V  R  R  Q  A  Y  *  F  K  Q  L  L  Y  I  V  K  Q  V  *  T  V  N  V  I  S  C  I  *  V  F  I  *  T  S  F  A  V  R  Q  I  T   </second_frame>
            <third_frame>   K  V  Q  D  P  R  A  A  G  Q  V  R  G  E  K  I  Q  A  T  A  K  T  G  N  R  L  Q  V  C  R  S  S  L  S  A  V  F  F  K  E  C  T  V  L  L  C  I  P  A  R  P  M  V  E  I  L  *  A  *  R  K  V  C  N  I  L  S  Y  K  L  Q  G  A  D  S  A  P  T  L  S  I  V  W  R  I  E  R  R  C  F  A  L  *  L  G  R  S  G  R  L  C  S  S  I  W  P  L  F  L  S  L  H  T  T  K  R  P  *  Y  A  D  K  I  V  A  F  G  V  L  Y  I  Q  I  W  L  G  G  R  R  I  S  L  N  S  C  C  T  *  *  S  K  F  E  Q  L  M  S  S  H  V  Y  K  F  L  Y  R  L  A  L  L  F  V  R  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60921" stop="61214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKRFRQQLKQETGFRFADHHYLQFFSRNVLYSYVYQPGQWLKFFKHKGRFATSYPINFREQTLHQLYLLFGESKDAVLLYDLVEVADFVPAYGLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="87728" PGL_stop="85616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87728" e_stop="87264"/>
            <exon e_start="86067" e_stop="86019"/>
            <exon e_start="85671" e_stop="85616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87728" e_stop="87264" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87263" i_stop="86068" i_length="1196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86067" e_stop="86019" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.966">
            <gDNA_intron_boundary i_start="86018" i_stop="85672" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="85671" e_stop="85616" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87728" stop="87264"/>
              <exon start="86067" stop="86019"/>
              <exon start="85671" stop="85616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAG : GGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTG : GTGCAGCTAATGACCTAGGGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</gDNA_template>
            <first_frame> P  N  A  V  F  W  G  R  L  R  S  S  I  L  G  L  A  A  A  S  M  L  *  L  S  F  T  L  R  V  E  A  F  P  F  V  L  L  S  F  G  V  E  F  S  F  L  I  S  R  C  C  C  S  *  M  K  F  *  M  A  R  L  V  I  D  W  S  T  L  I  D  D  K  P  P  A  E  L  V  V  A  T  K  A  T  P  M  I  S  I  D  D  G  E  E  Q  N  D  E  F  S  N  L  R  I  D  E  L  T  E  K  I  N  R  F  K  S  L  L  S  T  K  G  P  R  L  V  D  G  G  E  K  L  K  T  T  I  K  K  Y  E  A  E  F  E  R  R  K  L  L  N  S  D  K  :  G  T  D  G  C  A  L  L  G  R  H  H  S  S  S  I   : G  A  A  N  D  L  G  Q  R  S  A  Q  S  A  P  R  S  Q  S </first_frame>
            <second_frame>  P  M  Q  C  F  G  V  G  Y  G  L  V  F  L  V  *  Q  Q  H  R  C  Y  S  S  L  L  L  S  E  S  K  L  F  L  S  S  C  S  L  L  E  W  N  F  R  F  *  S  L  D  V  A  V  V  E  *  N  S  K  W  H  G  *  L  L  I  G  V  R  *  *  T  T  S  L  R  P  S  W  W  S  L  L  K  Q  L  R  *  L  A  *  T  T  G  K  S  K  M  T  S  F  Q  T  *  G  L  M  N  *  L  K  K  L  T  G  S  K  V  C  *  A  P  K  A  L  D  *  L  T  G  A  R  N  *  K  Q  Q  *  K  S  T  R  L  N  L  R  G  E  N  C  *  T  P  I  R :   E  Q  M  D  V  P  Y  W  G  G  I  T  L  V  L  L  :  V  Q  L  M  T  *  G  S  G  L  H  N  Q  H  H  A  R  N   </second_frame>
            <third_frame>   Q  C  S  V  L  G  *  V  T  V  *  Y  S  W  F  S  S  S  I  D  V  I  A  L  F  Y  S  Q  S  R  S  F  S  F  R  L  A  L  F  W  S  G  I  F  V  F  D  L  S  M  L  L  *  L  N  E  I  L  N  G  T  V  S  Y  *  L  E  Y  A  N  R  R  Q  A  S  G  R  V  G  G  R  Y  *  S  N  S  D  D  *  H  R  R  R  G  R  A  K  *  R  V  F  K  P  K  D  *  *  T  D  *  K  N  *  Q  V  Q  K  F  V  E  H  Q  R  P  *  I  S  *  R  G  R  E  T  E  N  N  N  K  K  V  R  G  *  I  *  E  E  K  I  A  K  L  R  *   : G  N  R  W  M  C  L  I  G  E  A  S  L  *  F  Y  W :   C  S  *  *  P  R  A  A  V  C  T  I  S  T  T  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87551" stop="87264"/>
                    <exon start="86067" stop="86019"/>
                    <exon start="85671" stop="85616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MARLVIDWSTLIDDKPPAELVVATKATPMISIDDGEEQNDEFSNLRIDELTEKINRFKSLLSTKGPRLVDGGEKLKTTIKKYEAEFERRKLLNSDKGTDGCALLGRHHSSSIGAANDLGQRSAQSAPRSQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="89006" PGL_stop="92300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89006" e_stop="89541"/>
            <exon e_start="90913" e_stop="91166"/>
            <exon e_start="91301" e_stop="91453"/>
            <exon e_start="91862" e_stop="92300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="89006" e_stop="89541" e_length="536"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90913" e_stop="91166" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91301" e_stop="91453" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.583" acc_prob="0.963">
            <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="91862" e_stop="92300" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89006" stop="89541"/>
              <exon start="90913" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG : GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG : CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG : TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCAGGTAGAGATACAGCAAAAAATG</gDNA_template>
            <first_frame> G  S  L  P  N  P  Q  S  S  A  T  N  F  H  I  H  G  G  F  S  S  F  A  G  K  F  R  R  R  K  F  T  T  T  D  R  I  *  Q  Q  N  L  A  I  R  S  I  S  G  T  V  V  I  F  T  S  A  T  T  S  A  V  D  P  A  L  L  R  Y  T  S  V  V  S  S  G  D  A  T  S  T  T  T  W  C  W  C  S  S  Y  V  L  A  S  S  *  P  *  L  A  A  A  N  I  E  F  S  E  S  F  G  S  A  S  R  S  E  F  C  A  A  V  D  D  S  S  T  Y  S  W  C  W  S  C  P  D  G  F  G  A  A  N  Y  A  T  L  C  Y  A  W  T  D  G  E  T  I  R  S  Y  A  *  R  L  P  C  Y  A  S  T  C  S  T  G  R  H  D  S  S  R :   N  S  A  L  C  I  T  V  H  T  D  G  S  T  S  F  S  S  T  P  T  W  C  S  W  H  Y  S  S  L  D  A  P  S  N  P  Y  D  A  S  S  N  H  S  S  C  C  Q  A  S  C  H  P  K  H  Y  S  N  R  E  T  T  N  N  S  L  C  W  Q  D  I  V  H  C  R  K  *  F  Y  A  F  S  F  A   : A  L  R  A  C  *  E  L  E  A  C  S  R  S  D  *  W  I  T  *  R  F  W  V  L  *  V  *  V  C  *  G  G  S  P  C  I  K  I  A  Q  Q  I  K  H  R  W  A  G  A  N   : V  K  C  Q  S  S  N  S  R  F  P  *  T  V  C  *  K  E  S  R  E  L  K  E  T  Q  R  I  *  K  *  R  H  *  E  R  R  R  K  C  I  R  W  G  D  K  *  K  S  K  D  D  R  *  T  S  *  V  *  Y  R  R  I  K  A  R  *  W  *  *  R  E  Q  R  K  S  *  C  C  *  L  W  S  G  H  *  R  R  *  A  S  *  Q  R  G  L  G  E  A  Q  G  Y  D  R  G  K  A  E  E  *  T  I  T  T  S  T  S  T  S  T  S  T  *  R  W  F  *  *  L  I  Y  G  R  P  Q  R  W  R  T  R  *  R  Y  S  K  K   </first_frame>
            <second_frame>  A  H  S  Q  T  H  N  L  R  L  P  I  S  T  S  M  A  D  S  A  P  S  P  E  N  S  A  V  A  N  S  Q  P  L  T  E  S  D  N  K  T  S  Q  S  D  P  S  P  A  P  S  L  S  S  P  L  P  P  P  P  P  L  I  Q  P  Y  S  G  T  P  P  S  F  R  P  A  T  P  P  A  P  L  P  G  V  G  V  A  P  M  F  S  P  L  P  N  P  N  L  Q  Q  Q  T  L  N  F  P  N  P  S  V  Q  P  P  G  V  N  S  V  P  P  S  M  I  P  A  P  T  A  G  A  G  A  V  Q  M  G  S  A  P  Q  I  M  P  P  Y  A  M  P  G  Q  M  V  R  P  Y  A  P  M  P  N  G  Y  H  A  M  P  Q  P  A  P  Q  G  A  M  I  H  P   : G  I  P  R  Y  A  S  P  Y  T  Q  M  A  R  P  V  F  P  P  R  P  L  G  A  V  G  I  I  P  P  L  M  R  P  P  I  P  M  M  R  P  P  I  I  P  P  V  A  R  P  A  A  I  P  S  I  T  Q  T  E  K  P  Q  T  T  V  Y  V  G  K  I  S  S  T  A  E  N  D  F  M  L  S  L  L  Q  :  L  C  G  P  V  R  S  W  K  R  A  Q  D  P  T  N  G  S  L  K  G  F  G  F  C  E  F  E  S  A  E  G  V  L  R  A  L  R  L  L  N  K  L  N  I  D  G  Q  E  L  M  :  L  N  V  N  Q  A  T  R  D  F  L  E  R  Y  V  E  K  K  A  E  N  S  K  K  P  K  E  S  E  S  E  G  T  E  K  E  G  E  S  A  L  G  G  E  T  N  E  N  P  K  T  T  A  E  P  P  E  S  S  T  E  E  S  K  Q  D  S  G  D  K  G  N  K  E  N  L  D  A  A  N  F  G  L  V  T  D  E  D  R  Q  A  D  K  E  A  L  E  K  L  K  D  M  I  E  E  R  L  K  N  K  P  L  P  P  P  P  P  P  P  Q  A  P  K  D  G  S  D  N  S  Y  T  E  D  L  K  D  G  E  P  G  R  D  T  A  K  N  </second_frame>
            <third_frame>   L  T  P  K  P  T  I  F  G  Y  Q  F  P  H  P  W  R  I  Q  L  L  R  R  K  I  P  P  S  Q  I  H  N  H  *  Q  N  L  T  T  K  P  R  N  Q  I  H  L  R  H  R  R  Y  L  H  L  C  H  H  L  R  R  *  S  S  L  T  P  V  H  L  R  R  F  V  R  R  R  H  Q  H  H  Y  L  V  L  V  *  L  L  C  S  R  L  F  L  T  L  T  C  S  S  K  H  *  I  F  R  I  L  R  F  S  L  P  E  *  I  L  C  R  R  R  *  F  Q  H  L  Q  L  V  L  E  L  S  R  W  V  R  R  R  K  L  C  H  L  M  L  C  L  D  R  W  *  D  H  T  L  L  C  L  T  V  T  M  L  C  L  N  L  L  H  R  A  P  *  F  I  P  :  E  F  R  V  M  H  H  R  T  H  R  W  L  D  Q  F  F  L  H  A  H  L  V  Q  L  A  L  F  L  P  *  C  A  L  Q  S  L  *  C  V  L  Q  S  F  L  L  L  P  G  Q  L  P  S  Q  A  L  L  K  Q  R  N  H  K  Q  Q  F  M  L  A  R  Y  R  P  L  Q  K  M  I  L  C  F  L  F  C  S :   S  A  G  L  L  G  V  G  S  V  L  K  I  R  L  M  D  H  L  K  V  L  G  F  V  S  L  S  L  L  R  G  F  S  V  H  *  D  C  S  T  N  *  T  S  M  G  R  S  *  C :   *  M  S  I  K  Q  L  A  I  S  L  N  G  M  L  K  R  K  Q  R  T  Q  R  N  P  K  N  L  K  V  K  A  L  R  K  K  E  K  V  H  *  V  G  R  Q  M  K  I  Q  R  R  P  L  N  L  L  S  L  V  Q  K  N  Q  S  K  I  V  V  I  K  G  T  K  K  I  L  M  L  L  T  L  V  W  S  L  T  K  I  G  K  L  T  K  R  P  W  R  S  S  R  I  *  S  R  K  G  *  R  I  N  H  Y  H  L  H  L  H  L  H  K  H  L  K  M  V  L  I  T  H  I  R  K  T  S  K  M  E  N  Q  V  E  I  Q  Q  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89007" stop="89541"/>
                    <exon start="90913" stop="91166"/>
                    <exon start="91301" stop="91453"/>
                    <exon start="91862" stop="92299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHSQTHNLRLPISTSMADSAPSPENSAVANSQPLTESDNKTSQSDPSPAPSLSSPLPPPPPLIQPYSGTPPSFRPATPPAPLPGVGVAPMFSPLPNPNLQQQTLNFPNPSVQPPGVNSVPPSMIPAPTAGAGAVQMGSAPQIMPPYAMPGQMVRPYAPMPNGYHAMPQPAPQGAMIHPGIPRYASPYTQMARPVFPPRPLGAVGIIPPLMRPPIPMMRPPIIPPVARPAAIPSITQTEKPQTTVYVGKISSTAENDFMLSLLQLCGPVRSWKRAQDPTNGSLKGFGFCEFESAEGVLRALRLLNKLNIDGQELMLNVNQATRDFLERYVEKKAENSKKPKESESEGTEKEGESALGGETNENPKTTAEPPESSTEESKQDSGDKGNKENLDAANFGLVTDEDRQADKEALEKLKDMIEERLKNKPLPPPPPPPQAPKDGSDNSYTEDLKDGEPGRDTAKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="92978" PGL_stop="94577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92978" e_stop="93055"/>
            <exon e_start="93146" e_stop="93729"/>
            <exon e_start="94207" e_stop="94577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92978" e_stop="93055" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93056" i_stop="93145" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93146" e_stop="93729" e_length="584"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94207" e_stop="94577" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92978" stop="93055"/>
              <exon start="93146" stop="93729"/>
              <exon start="94207" stop="94577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGG : GTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG : AATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</gDNA_template>
            <first_frame> K  L  F  H  M  R  K  T  I  L  I  A  K  I  R  I  S  R  Q  L  I  L  I  *  A  R  :  V  K  E  L  H  K  M  G  L  M  K  N  P  C  V  Q  L  L  Q  H  Q  T  *  G  I  I  A  M  P  L  Q  K  G  *  N  L  A  S  Q  G  Q  E  K  E  L  L  S  L  L  S  S  M  R  M  R  M  R  I  L  K  K  K  R  K  *  G  H  W  F  Q  L  T  T  Q  L  T  N  I  W  S  N  L  P  S  L  *  H  R  R  L  W  L  Q  N  L  Q  S  E  F  Q  M  S  M  L  K  K  R  G  L  I  *  R  R  R  D  T  E  E  L  M  T  D  P  A  R  G  I  G  T  G  M  T  R  R  L  T  E  P  G  M  T  V  E  T  L  I  M  A  E  F  G  K  L  D  L  I  R  L  R  H  L  I  I  R  S  F  *  M  Q  S  N  *  L  T  *  F  Q  R  P  K  M  S  C  S  L  M  R  *  T  G  L  L  M  T  R :   M  H  Y  M  K  G  *  D  R  G  S  V  R  R  S  L  I  S  L  V  R  R  S  R  R  W  *  T  T  S  S  P  A  L  K  N  M  S  R  Q  L  R  C  W  R  G  S  K  V  Y  *  M  K  K  L  K  C  L  F  *  R  C  G  G  C  L  Y  L  K  S  R  K  L  R  Q  V  W  L  *  G  P  N  P  N  F  S  C  V  L  T  C  N  L  K  A  Y  S  L  T  L  A  T  L  S  N  H  C  R  I  V  F  F  Q  A  *  K  *  Q  I  V  *  V  K  </first_frame>
            <second_frame>  S  Y  F  I  *  G  K  Q  S  *  *  P  R  *  E  Y  R  D  S  S  F  *  F  K  P  G :   *  R  S  C  T  K  W  D  *  *  R  I  R  A  C  S  Y  C  N  I  R  H  E  A  *  *  Q  C  P  Y  K  K  V  R  I  W  P  L  R  V  R  K  K  S  C  C  P  F  F  L  Q  C  G  *  G  *  G  Y  S  K  R  K  E  N  E  A  I  G  S  N  *  L  L  S  *  R  T  Y  G  P  T  F  H  L  C  S  I  A  D  Y  G  C  R  I  C  K  A  N  F  K  C  Q  C  *  R  R  E  A  *  Y  R  E  G  E  T  Q  K  N  S  *  Q  I  Q  P  E  G  S  G  Q  A  *  R  G  D  *  P  N  Q  G  *  R  *  K  P  *  S  W  Q  S  S  G  N  *  T  *  *  G  *  D  T  *  *  S  E  A  F  R  C  K  A  I  D  *  H  D  S  K  D  Q  R  *  V  V  L  L  *  D  K  L  G  Y  L  *  Q   : E  C  I  T  *  K  D  E  T  V  D  Q  *  E  D  H  *  F  P  W  *  G  G  A  D  A  G  R  L  H  R  L  Q  H  S  R  T  C  Q  G  N  *  D  A  G  E  A  P  K  Y  I  R  *  R  S  *  N  V  C  S  E  D  V  E  D  A  Y  I  *  N  Q  E  S  *  D  R  S  G  F  K  A  Q  I  L  I  S  V  V  F  S  P  V  T  *  K  H  I  H  *  L  L  L  L  Y  Q  I  I  V  E  L  F  S  F  K  L  K  N  D  K  *  F  R  S  K </second_frame>
            <third_frame>   V  I  S  Y  E  E  N  N  L  D  S  Q  D  K  N  I  E  T  A  H  F  N  L  S  Q   : G  E  G  V  A  Q  N  G  T  D  E  E  S  V  R  A  V  T  A  T  S  D  M  R  H  N  S  N  A  P  T  K  R  L  E  F  G  L  S  G  S  G  K  R  A  A  V  P  S  F  F  N  A  D  E  D  E  D  T  Q  K  E  K  K  M  R  P  L  V  P  I  D  Y  S  A  D  E  H  M  V  Q  P  S  I  S  V  A  S  P  T  M  A  A  E  F  A  K  R  I  S  N  V  N  A  K  E  E  R  P  D  I  E  K  E  R  H  R  R  T  H  D  R  S  S  Q  R  D  R  D  R  H  D  E  E  T  N  R  T  R  D  D  G  R  N  L  D  H  G  R  V  R  E  T  R  P  D  K  V  K  T  P  D  N  Q  K  L  L  D  A  K  Q  L  I  D  M  I  P  K  T  K  D  E  L  F  S  Y  E  I  N  W  A  T  Y  D  K  :  N  A  L  H  E  R  M  R  P  W  I  S  K  K  I  T  D  F  L  G  E  E  E  P  T  L  V  D  Y  I  V  S  S  T  Q  E  H  V  K  A  T  E  M  L  E  R  L  Q  S  I  L  D  E  E  A  E  M  F  V  L  K  M  W  R  M  L  I  F  E  I  K  K  V  E  T  G  L  A  L  R  P  K  S  *  F  Q  L  C  S  H  L  *  L  E  S  I  F  I  N  S  C  Y  S  I  K  S  L  *  N  C  F  L  S  S  L  K  M  T  N  S  L  G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92980" stop="93055"/>
                    <exon start="93146" stop="93729"/>
                    <exon start="94207" stop="94458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISYEENNLDSQDKNIETAHFNLSQGEGVAQNGTDEESVRAVTATSDMRHNSNAPTKRLEFGLSGSGKRAAVPSFFNADEDEDTQKEKKMRPLVPIDYSADEHMVQPSISVASPTMAAEFAKRISNVNAKEERPDIEKERHRRTHDRSSQRDRDRHDEETNRTRDDGRNLDHGRVRETRPDKVKTPDNQKLLDAKQLIDMIPKTKDELFSYEINWATYDKNALHERMRPWISKKITDFLGEEEPTLVDYIVSSTQEHVKATEMLERLQSILDEEAEMFVLKMWRMLIFEIKKVETGLALRPKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="101776" PGL_stop="97837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101776" e_stop="101658"/>
            <exon e_start="100317" e_stop="100280"/>
            <exon e_start="100182" e_stop="100160"/>
            <exon e_start="99228" e_stop="99122"/>
            <exon e_start="99051" e_stop="99000"/>
            <exon e_start="98925" e_stop="98841"/>
            <exon e_start="98389" e_stop="98299"/>
            <exon e_start="97984" e_stop="97949"/>
            <exon e_start="97843" e_stop="97837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.928" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101776" e_stop="101658" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101657" i_stop="100318" i_length="1340"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100317" e_stop="100280" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100279" i_stop="100183" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100182" e_stop="100160" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.948">
            <gDNA_intron_boundary i_start="100159" i_stop="99229" i_length="931"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99228" e_stop="99122" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.830" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99121" i_stop="99052" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99051" e_stop="99000" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.803" acc_prob="0.539">
            <gDNA_intron_boundary i_start="98999" i_stop="98926" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98925" e_stop="98841" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98840" i_stop="98390" i_length="451"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98389" e_stop="98299" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.895">
            <gDNA_intron_boundary i_start="98298" i_stop="97985" i_length="314"/>
          </intron>
          <exon e_serial="8" e_score="0.972">
            <gDNA_exon_boundary e_start="97984" e_stop="97949" e_length="36"/>
          </exon>
          <intron i_serial="8" don_prob="0.760" acc_prob="0.928">
            <gDNA_intron_boundary i_start="97948" i_stop="97844" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97843" e_stop="97837" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101776" stop="101658"/>
              <exon start="100317" stop="100280"/>
              <exon start="100182" stop="100160"/>
              <exon start="99228" stop="99122"/>
              <exon start="99051" stop="99000"/>
              <exon start="98925" stop="98841"/>
              <exon start="98389" stop="98299"/>
              <exon start="97984" stop="97949"/>
              <exon start="97843" stop="97837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAG : CAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAG : GCTTCGTGAATTGAAGCAGCTAG : GTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAA : GGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTG : GATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATG : GTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAG : GAAATGATAGTTGCTTCTGAGGCAGGTAAATCAGTG : AGCTCAA</gDNA_template>
            <first_frame> E  I  V  A  T  A  N  S  Y  Q  C  A  T  P  A  R  L  R  S  T  H  G  G  T  I  S  I  F  M  I  M  F  M  A  T  S  I  S  I  S :   K  L  *  I  S  S  T  L  N  S  F  R   : G  F  V  N  *  S  S  *  :  V  L  D  T  W  F  I  L  G  L  C  T  L  G  L  S  I  P  *  G  S  I  G  W  P  V  T  L  Y  I  D  L  R  P  I  K :   D  R  S  L  V  L  N  L  L  M  Y  R  P  *  N  L  L  :  D  Y  Y  M  M  W  V  M  G  H  S  V  T  C  L  S  V  K  F  F  L  G  F  A  A  A  L  N   : G  P  M  R  I  C  L  *  R  *  *  T  T  L  L  M  R  I  A  L  I  L  I  L  A  L  *  R  K  *  R :   K  *  *  L  L  L  R  Q  V  N  Q  * :   A  Q </first_frame>
            <second_frame>  R  L  *  Q  Q  Q  T  L  T  N  V  R  L  R  R  G  S  V  R  H  T  A  V  L  *  A  Y  S  *  *  C  S  W  Q  H  L  S  R  *   : A  S  S  E  F  H  R  H  *  T  V  S  E  :  A  S  *  I  E  A  A  R :   S  W  I  H  G  L  S  W  G  C  A  L  S  V  *  A  F  P  R  G  L  L  A  G  Q  *  R  C  T  *  T  *  D  L  S   : R  T  G  A  W  Y  *  I  F  *  C  T  D  R  E  T  C  W :   I  T  T  *  C  G  S  W  A  I  Q  S  L  V  *  A  *  N  S  S  S  G  S  Q  R  H  *  M  :  V  P  *  G  Y  V  F  E  D  D  R  L  H  C  *  *  E  *  H  *  Y  *  F  W  H  F  E  E  S  K   : G  N  D  S  C  F  *  G  R  *  I  S   : E  L   </second_frame>
            <third_frame>   D  C  S  N  S  K  L  L  P  M  C  D  S  G  E  A  P  F  D  T  R  R  Y  Y  K  H  I  H  D  N  V  H  G  N  I  Y  L  D  K  :  Q  A  L  N  F  I  D  T  E  Q  F  Q  R :   L  R  E  L  K  Q  L   : G  L  G  Y  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  S  D  A  V  H  R  L  K  T  Y  Q  :  G  Q  E  L  G  I  E  S  F  D  V  Q  T  V  K  L  A   : G  L  L  H  D  V  G  H  G  P  F  S  H  L  F  E  R  E  I  L  P  R  V  R  S  G  I  K  W :   S  H  E  D  M  S  L  K  M  I  D  Y  I  V  D  E  N  S  I  D  I  D  S  G  T  L  K  K  V  K  :  E  M  I  V  A  S  E  A  G  K  S  V  :  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101774" stop="101658"/>
                    <exon start="100317" stop="100280"/>
                    <exon start="100182" stop="100160"/>
                    <exon start="99228" stop="99122"/>
                    <exon start="99051" stop="99000"/>
                    <exon start="98925" stop="98841"/>
                    <exon start="98389" stop="98299"/>
                    <exon start="97984" stop="97949"/>
                    <exon start="97843" stop="97838"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCSNSKLLPMCDSGEAPFDTRRYYKHIHDNVHGNIYLDKQALNFIDTEQFQRLRELKQLGLGYMVYPGAVHSRFEHSLGVYWLASDAVHRLKTYQGQELGIESFDVQTVKLAGLLHDVGHGPFSHLFEREILPRVRSGIKWSHEDMSLKMIDYIVDENSIDIDSGTLKKVKEMIVASEAGKSVSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="108848" PGL_stop="103170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108848" e_stop="108604"/>
            <exon e_start="108522" e_stop="108446"/>
            <exon e_start="107403" e_stop="107301"/>
            <exon e_start="107111" e_stop="107014"/>
            <exon e_start="106921" e_stop="106791"/>
            <exon e_start="106693" e_stop="106585"/>
            <exon e_start="106151" e_stop="105960"/>
            <exon e_start="105871" e_stop="105735"/>
            <exon e_start="103738" e_stop="103170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.428" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108848" e_stop="108604" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108522" e_stop="108446" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.821">
            <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107403" e_stop="107301" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.839">
            <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107111" e_stop="107014" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.875">
            <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106921" e_stop="106791" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106693" e_stop="106585" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.726" acc_prob="0.980">
            <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106151" e_stop="105960" e_length="192"/>
          </exon>
          <intron i_serial="7" don_prob="0.428" acc_prob="0.983">
            <gDNA_intron_boundary i_start="105959" i_stop="105872" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="105871" e_stop="105735" e_length="137"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105734" i_stop="103739" i_length="1996"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103738" e_stop="103170" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108848" stop="108604"/>
              <exon start="108522" stop="108446"/>
              <exon start="107403" stop="107301"/>
              <exon start="107111" stop="107014"/>
              <exon start="106921" stop="106791"/>
              <exon start="106693" stop="106585"/>
              <exon start="106151" stop="105960"/>
              <exon start="105871" stop="105735"/>
              <exon start="103738" stop="103170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG : GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG : AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG : GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG : ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG : AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG : GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAG : GTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAG : TGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</gDNA_template>
            <first_frame> K  T  V  W  C  V  F  E  D  E  A  N  S  F  L  R  R  Q  Q  Q  Q  L  C  F  A  W  N  N  F  S  L  L  K  L  H  K  F  S  I  *  N  Q  I  F  S  K  A  A  S  F  K  N  I  S  Y  L  H  H  S  S  L  S  F  S  Y  S  S  S  T  F  F  Y  T  S  N  Q  P  F  C  *  F  W :   R  *  W  P  K  W  V  S  I  E  G  F  K  S  G  F  E  R  D  E  I  Y  *  S  *   : E  M  G  S  V  I  W  L  *  A  C  S  G  S  D  V  M  E  T  S  V  W  G  *  Y  L  G  S  M  Q  *  G  I  R  R :   F  E  *  G  F  Q  E  N  V  G  *  T  C  *  I  *  D  V  K  L  E  R  Y  S  D  S  V  *  W  N  *  K   : D  V  I  Q  V  G  R  W  S  G  N  R  N  C  S  D  T  L  *  A  G  Q  E  H  C  L  Y  I  *  S  S  R  L  C  H  E  L  P  V  L  L  Y  R  Q  :  N  G  S  E  E  K  L  I  H  F  *  D  S  *  A  G  C  F  S  S  T  L  V  I  Q  *  S  W  T  N  *  Q  R  C  V  Y   : G  N  G  R  T  A  S  Q  H  *  E  C  L  E  S  C  R  H  I  G  R  *  T  R  A  S  F  *  S  S  K  G  H  R  F  Y  *  W  A  C  A  P  A  *  A  V  S  S  R  V  Q  L  C  F  G  S  Q  F  E  C  Y  N  *  *   : G  Q  K  L  D  H  A  N  *  P  Q  I  *  L  E  L  A  S  W  N  T  K  R  G  A  S  I  K  T  *  I  Q  S  S  V  R  V  C  N  A  C  R  S  *  *  *  :  C  *  G  C  K  E  T  N  R  S  S  P  G  H  S  M  Q  D  *  P  D  H  F  *  P  S  F  W  I  L  L  Q  T  N  Y  K  R  E  D  N  R  V  Q  R  H  S  C  *  S  R  M  C  G  A  F  S  M  E  *  R  R  *  S  N  G  C  L  W  S  V  R  *  T  R  *  N  P  S  S  R  A  S  R  A  F  P  I  S  S  S  T  G  S  C  R  V  I  S  C  A  L  F  S  S  M  F  I  L  V  L  S  K  M  S  H  S  F  K  L  Q  S  C  M  L  M  N  Q  S  L  I  L  F  R  L  D  S  L  C  S  T  F  *  D  F  F  L  L  Q  L  R  S  S  L  G  V  L  R  I  W  P  C  F  I  M  K  F  G  K  K  V  K  N  F  H  C  Q  S  P  P  Q  H  V  C  Q  F  T  I  L  S   </first_frame>
            <second_frame>  R  P  F  G  V  C  L  R  M  R  R  I  R  F  S  G  G  S  S  S  N  C  A  L  L  G  T  T  F  P  F  S  N  Y  T  N  F  P  F  K  T  K  S  F  L  K  L  L  P  S  R  T  S  L  I  F  T  T  P  H  Y  R  L  V  T  A  A  Q  H  S  S  T  P  Q  T  N  L  S  V  D  S   : G  G  S  G  R  N  G  Y  P  L  K  D  S  K  V  V  L  K  G  M  R  Y  T  D  L  E  :  K  W  V  Q  S  Y  G  Y  R  P  A  Q  A  L  M  L  W  K  R  L  Y  G  D  N  I  W  A  Q  C  S  E  E  L  E   : G  L  N  K  D  F  R  K  M  L  G  E  H  A  E  F  K  T  L  N  L  K  D  I  L  T  A  S  D  G  T  K  K  :  M  L  F  K  L  E  D  G  L  V  I  E  T  V  L  I  P  C  E  R  G  R  N  T  V  C  I  S  S  Q  V  G  C  A  M  N  C  Q  F  C  Y  T  G  R :   M  G  L  K  R  N  L  S  T  S  E  I  V  E  Q  A  V  L  A  R  R  L  L  S  S  E  V  G  P  I  S  N  V  V  F  M  :  G  M  G  E  P  L  H  N  I  E  N  V  L  K  A  A  D  I  L  V  D  E  Q  G  L  H  F  S  P  R  K  V  T  V  S  T  S  G  L  V  P  Q  L  K  R  F  L  R  E  S  N  C  A  L  A  V  S  L  N  A  T  T  D  E  :  V  R  S  W  I  M  P  I  N  R  K  F  N  L  N  L  L  L  G  T  L  R  E  E  L  Q  S  K  H  K  Y  K  V  L  F  E  Y  V  M  L  A  G  V  N  D  S :   V  E  D  A  K  R  L  I  D  L  V  Q  G  I  P  C  K  I  N  L  I  T  F  N  P  H  S  G  S  F  F  K  P  T  T  R  E  K  I  I  E  F  R  D  I  L  A  E  A  G  C  V  V  L  F  R  W  S  R  G  D  D  Q  M  A  A  C  G  Q  L  G  K  P  G  E  I  Q  A  P  V  L  R  V  P  S  Q  F  Q  A  V  L  E  A  A  A  *  F  R  V  L  F  F  Q  A  C  S  S  W  F  C  P  K  C  L  T  V  S  N  F  K  V  V  C  S  *  I  N  H  *  S  C  S  G  *  I  V  Y  A  V  L  F  K  I  S  F  F  F  N  S  D  L  H  *  A  S  *  E  F  G  H  V  S  L  *  N  S  E  K  K  *  K  I  F  I  V  N  R  L  L  N  T  F  V  N  S  P  Y  Y  R  </second_frame>
            <third_frame>   D  R  L  V  C  V  *  G  *  G  E  F  V  S  P  A  A  A  A  A  T  V  L  C  L  E  Q  L  F  P  S  Q  I  T  Q  I  F  H  L  K  P  N  L  F  *  S  C  F  L  Q  E  H  L  L  S  S  P  L  L  I  I  V  *  L  Q  Q  L  N  I  L  L  H  L  K  P  T  F  L  L  I  L  :  E  V  V  A  E  M  G  I  H  *  R  I  Q  K  W  F  *  K  G  *  D  I  L  I  L  R :   N  G  F  S  H  M  V  I  G  L  L  R  L  *  C  Y  G  N  V  C  M  G  I  I  F  G  L  N  A  V  R  N  *  K  :  V  *  I  R  I  S  G  K  C  W  V  N  M  L  N  L  R  R  *  T  *  K  I  F  *  Q  R  L  M  E  L  K  R :   C  Y  S  S  W  K  M  V  W  *  *  K  L  F  *  Y  L  V  S  G  A  G  T  L  S  V  Y  L  V  K  *  V  V  P  *  I  A  S  F  A  I  P  A   : E  W  V  *  R  E  T  Y  P  L  L  R  *  L  S  R  L  F  *  L  D  A  C  Y  P  V  K  L  D  Q  L  A  T  L  C  L  W :   E  W  E  N  R  F  T  T  L  R  M  S  *  K  L  Q  T  Y  W  *  M  N  K  G  F  I  L  V  L  E  R  S  P  F  L  L  V  G  L  C  P  S  L  S  G  F  F  A  S  P  I  V  L  W  Q  S  V  *  M  L  Q  L  M  R :   S  E  V  G  S  C  Q  L  T  A  N  L  T  *  T  C  F  L  E  H  *  E  R  S  F  N  Q  N  I  N  T  K  F  C  S  S  M  *  C  L  P  E  L  M  I   : V  L  R  M  Q  R  D  *  S  I  *  S  R  A  F  H  A  R  L  T  *  S  L  L  T  L  I  L  D  P  S  S  N  Q  L  Q  E  R  R  *  S  S  S  E  T  F  L  L  K  Q  D  V  W  C  F  F  D  G  V  E  E  M  I  K  W  L  P  V  V  S  *  V  N  Q  V  K  S  K  L  P  C  F  A  C  L  P  N  F  K  Q  Y  W  K  L  P  R  D  F  V  C  S  F  F  K  H  V  H  P  G  F  V  Q  N  V  S  Q  F  Q  T  S  K  L  Y  A  H  E  S  I  T  D  L  V  Q  V  R  *  F  M  Q  Y  F  L  R  F  L  S  S  S  T  Q  I  F  I  R  R  P  E  N  L  A  M  F  H  Y  E  I  R  K  K  S  E  K  F  S  L  S  I  A  S  S  T  R  L  S  I  H  H  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108847" stop="108604"/>
                    <exon start="108522" stop="108446"/>
                    <exon start="107403" stop="107301"/>
                    <exon start="107111" stop="107014"/>
                    <exon start="106921" stop="106791"/>
                    <exon start="106693" stop="106585"/>
                    <exon start="106151" stop="105960"/>
                    <exon start="105871" stop="105735"/>
                    <exon start="103738" stop="103450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPFGVCLRMRRIRFSGGSSSNCALLGTTFPFSNYTNFPFKTKSFLKLLPSRTSLIFTTPHYRLVTAAQHSSTPQTNLSVDSGGSGRNGYPLKDSKVVLKGMRYTDLEKWVQSYGYRPAQALMLWKRLYGDNIWAQCSEELEGLNKDFRKMLGEHAEFKTLNLKDILTASDGTKKMLFKLEDGLVIETVLIPCERGRNTVCISSQVGCAMNCQFCYTGRMGLKRNLSTSEIVEQAVLARRLLSSEVGPISNVVFMGMGEPLHNIENVLKAADILVDEQGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRSWIMPINRKFNLNLLLGTLREELQSKHKYKVLFEYVMLAGVNDSVEDAKRLIDLVQGIPCKINLITFNPHSGSFFKPTTREKIIEFRDILAEAGCVVLFRWSRGDDQMAACGQLGKPGEIQAPVLRVPSQFQAVLEAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="112582" PGL_stop="111947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112582" e_stop="111947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112582" e_stop="111947" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112582" stop="111947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</gDNA_template>
            <first_frame> K  N  I  T  L  K  W  S  I  S  S  L  F  L  R  A  F  V  D  S  L  H  S  T  F  L  I  C  *  K  F  *  K  K  R  S  Y  F  S  V  I  S  *  F  S  R  S  G  V  V  E  E  F  Y  V  L  I  L  N  H  F  I  Q  L  C  *  F  V  I  F  L  K  I  L  K  K  K  R  C  Y  L  F  I  I  S  E  I  S  R  F  G  V  V  E  E  F  Q  V  L  I  L  T  Q  F  N  I  *  K  R  S  *  F  Q  D  Y  G  S  I  S  T  W  D  F  V  E  V  I  K  W  D  E  I  R  G  E  T  Y  K  *  T  *  E  F  T  F  A  G  Y  *  Y  C  S  C  R  S  *  *  E  E  F  M  A  K  A  W  I  F  H  Q  G  I  G  F  F  A  F  H  L  C  K  S  S  R  *  A  R  *  F  G  F  K  *  *  N  A  A  R  T  V  H  L  C  R  *  I  R  A  R  F  A  C  S </first_frame>
            <second_frame>  K  I  S  L  *  N  G  Q  F  L  L  C  F  *  E  L  L  L  T  H  S  T  Q  L  S  *  F  V  E  N  S  E  K  K  D  L  T  F  L  *  F  L  N  F  Q  E  V  G  L  L  R  N  F  M  F  *  Y  *  I  T  L  F  S  F  V  D  S  L  F  S  *  K  F  *  K  K  K  G  V  I  F  L  *  F  L  K  F  Q  D  L  G  L  L  R  N  F  K  Y  *  S  *  L  N  L  I  S  K  K  G  L  N  F  K  I  M  A  A  L  A  P  G  I  L  L  K  L  L  N  G  M  K  S  G  V  K  P  T  S  E  H  R  S  S  L  L  Q  V  T  D  I  V  P  A  D  L  D  E  K  N  L  W  P  K  H  G  F  F  I  K  V  S  D  S  S  H  S  I  Y  V  S  L  P  D  E  Q  D  D  L  V  L  S  N  K  M  Q  L  G  Q  F  I  Y  V  D  R  L  E  P  G  S  P  V   </second_frame>
            <third_frame>   K  Y  H  S  E  M  V  N  F  F  F  V  F  K  S  F  C  *  L  T  P  L  N  F  L  D  L  L  K  I  L  K  K  K  I  L  L  F  C  N  F  L  I  F  K  K  W  G  C  *  G  I  L  C  F  D  I  E  S  L  Y  S  A  L  L  I  R  Y  F  L  E  N  S  E  K  K  K  V  L  S  F  Y  N  F  *  N  F  K  I  W  G  C  *  G  I  S  S  I  N  L  D  S  I  *  Y  L  K  K  V  L  I  S  R  L  W  Q  H  *  H  L  G  F  C  *  S  Y  *  M  G  *  N  Q  G  *  N  L  Q  V  N  I  G  V  H  F  C  R  L  L  I  L  F  L  Q  I  L  M  R  R  I  Y  G  Q  S  M  D  F  S  S  R  Y  R  I  L  R  I  P  F  M  *  V  F  Q  M  S  K  M  I  W  F  *  V  I  K  C  S  *  D  S  S  F  M  S  I  D  *  S  P  V  R  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112278" stop="111949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLISKKGLNFKIMAALAPGILLKLLNGMKSGVKPTSEHRSSLLQVTDIVPADLDEKNLWPKHGFFIKVSDSSHSIYVSLPDEQDDLVLSNKMQLGQFIYVDRLEPGSPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="118194" PGL_stop="117573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118194" e_stop="117573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="118194" e_stop="117573" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118194" stop="117573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTGCGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAGTCAAATATT</gDNA_template>
            <first_frame> K  C  V  S  S  I  E  D  M  I  D  F  S  T  S  V  L  G  Q  N  V  V  L  R  T  T  E  N  I  K  G  S  K  G  D  I  L  I  G  S  V  K  R  T  N  D  G  K  V  T  K  S  V  S  C  H  Q  S  L  F  P  Y  L  V  Y  Y  C  H  S  V  P  K  V  R  V  Y  E  A  D  I  L  D  P  N  S  K  A  K  I  N  H  G  V  A  I  C  H  V  D  T  S  A  W  G  A  N  H  G  A  F  T  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  N  W  A  V  A  D  *  N  G  S  S  N  F  H  I  R  V  G  S  I  T  V  L  V  Q  I  I  I  V  Q  F  *  C  I  L  T  S  F  C  F  L  I  I  Y  *  T  Y  N  E  L  T  V  I  T  T  M  V  I  S  K  A  Y  L  L  I  V  I  *  L  Q  *  R  R  V  K  Y  </first_frame>
            <second_frame>  S  A  S  A  Q  L  R  T  *  L  T  F  P  P  R  C  *  V  K  T  L  S  Y  E  Q  L  R  I  *  K  G  Q  R  E  I  F  *  L  D  R  *  K  E  P  T  M  G  K  *  R  N  R  Y  L  V  I  R  V  C  F  R  I  W  F  I  I  V  I  R  F  Q  R  F  G  F  M  K  R  I  Y  W  I  R  I  Q  R  L  R  L  I  M  V  L  P  F  V  M  W  T  R  Q  H  G  E  R  I  M  E  L  L  R  H  S  G  R  D  P  E  R  L  R  F  V  I  G  S  L  K  M  I  *  I  G  Q  L  L  I  K  M  D  L  P  T  F  I  F  G  S  D  Q  L  R  F  L  F  K  L  S  L  S  N  F  N  A  S  *  P  L  F  V  F  *  L  F  I  R  L  I  M  N  L  L  *  L  L  R  W  *  F  Q  R  P  I  Y  L  L  *  Y  N  Y  S  N  A  E  S  N  I </second_frame>
            <third_frame>   V  R  Q  L  N  *  G  H  D  *  L  F  H  L  G  V  R  S  K  R  C  P  T  N  N  *  E  Y  K  R  V  K  G  R  Y  F  N  W  I  G  E  K  N  Q  R  W  E  S  N  E  I  G  I  L  S  S  E  F  V  S  V  F  G  L  L  L  S  F  G  S  K  G  S  G  L  *  S  G  Y  I  G  S  E  F  K  G  *  D  *  S  W  C  C  H  L  S  C  G  H  V  S  M  G  S  E  S  W  S  F  Y  G  T  R  V  G  T  R  K  D  *  G  L  S  L  D  L  *  K  *  Y  E  L  G  S  C  *  L  K  W  I  F  Q  L  S  Y  S  G  R  I  N  Y  G  S  C  S  N  Y  H  C  P  I  L  M  H  L  D  L  F  L  F  F  N  Y  L  L  D  L  *  *  T  Y  C  N  Y  Y  D  G  N  F  K  G  L  F  T  Y  C  N  I  I  T  V  T  Q  S  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118194" stop="117781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCVSSIEDMIDFSTSVLGQNVVLRTTENIKGSKGDILIGSVKRTNDGKVTKSVSCHQSLFPYLVYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSAWGANHGAFTALGSGPGKIEVCHWIFENDMNWAVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="120704" PGL_stop="119043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120704" e_stop="120610"/>
            <exon e_start="119671" e_stop="119167"/>
            <exon e_start="119099" e_stop="119043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.309" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120704" e_stop="120610" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.309" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119671" e_stop="119167" e_length="505"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="119166" i_stop="119100" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="119099" e_stop="119043" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120704" stop="120610"/>
              <exon start="119671" stop="119167"/>
              <exon start="119099" stop="119043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT : GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAG : GCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTACGGGGCCAACGTCAATGTAC</gDNA_template>
            <first_frame> H  K  H  N  I  L  K  K  E  I  I  K  I  F  T  K  K  C  I  *  T  L  C  F  S  L  F  S  Y  F  S  V :   *  L  W  P  E  T  E  K  T  P  A  T  L  *  T  L  L  H  Q  K  L  I  Q  F  V  T  G  T  N  E  F  Q  I  N  Y  P  N  H  G  F  F  *  T  K  L  H  H  *  M  L  H  N  L  Q  N  T  Q  S  *  Q  Q  G  I  K  N  L  C  Q  M  K  F  N  H  F  A  P  L  Q  I  C  S  V  F  L  I  F  Q  Q  V  *  I  N  M  A  K  I  P  N  F  L  H  I  *  A  K  I  S  P  I  M  A  I  N  C  L  V  D  L  I  V  S  K  N  T  P  K  M  I  T  S  L  L  I  L  S  G  N  I  A  A  V  A  L  A  M  M  I  Y  F  L  L  T  H  Q  M  A  M  *  L  I  K  A  S  T  L  M  A  Q  :  A  L  L  L  L  A  L  A  N  S  K  S  T  G  P  T  S  M  Y </first_frame>
            <second_frame>  T  N  T  T  F  S  K  K  K  *  L  K  S  S  Q  R  N  A  Y  K  H  F  A  S  L  Y  F  P  T  F  Q   : C  D  C  G  R  K  Q  R  K  L  R  R  L  C  K  P  F  Y  T  K  S  L  F  N  S  L  L  E  Q  T  N  F  K  *  I  T  Q  T  M  V  S  S  E  Q  S  F  T  I  K  C  C  T  I  C  K  I  L  K  A  S  N  R  G  S  R  I  S  V  K  *  N  S  I  I  L  L  L  C  K  S  A  L  F  S  *  Y  F  N  K  F  R  *  T  W  P  R  Y  P  I  F  F  I  Y  E  Q  K  F  H  Q  L  W  Q  *  I  A  S  W  I  *  *  F  Q  K  I  R  R  K  *  *  P  P  C  *  F  F  P  A  I  *  P  R  W  R  W  P  *  *  Y  I  F  Y  L  R  T  K  W  Q  C  N  *  S  K  L  Q  H  L  W  H  R :   P  C  C  F  W  R  W  P  I  Q  N  L  R  G  Q  R  Q  C   </second_frame>
            <third_frame>   Q  T  Q  H  S  Q  K  R  N  N  *  N  L  H  K  E  M  H  I  N  T  L  L  L  S  I  F  L  L  F  S  :  V  I  V  A  G  N  R  E  N  S  G  D  S  V  N  P  F  T  P  K  A  Y  S  I  R  Y  W  N  K  R  I  S  N  K  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  F  A  K  Y  S  K  L  A  T  G  D  Q  E  S  L  S  N  E  I  Q  S  F  C  S  S  A  N  L  L  C  F  P  D  I  S  T  S  L  D  K  H  G  Q  D  T  Q  F  S  S  Y  M  S  K  N  F  T  N  Y  G  N  K  L  P  R  G  F  D  S  F  K  K  Y  A  E  N  D  N  L  P  V  N  S  F  R  Q  Y  S  R  G  G  A  G  H  D  D  I  F  S  T  Y  A  P  N  G  N  V  I  D  Q  S  F  N  T  Y  G  T   : G  L  A  A  F  G  V  G  Q  F  K  I  Y  G  A  N  V  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120669" stop="120610"/>
                    <exon start="119671" stop="119167"/>
                    <exon start="119099" stop="119044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLHKEMHINTLLLSIFLLFSVIVAGNRENSGDSVNPFTPKAYSIRYWNKRISNKLPKPWFLLNKASPLNAAQFAKYSKLATGDQESLSNEIQSFCSSANLLCFPDISTSLDKHGQDTQFSSYMSKNFTNYGNKLPRGFDSFKKYAENDNLPVNSFRQYSRGGAGHDDIFSTYAPNGNVIDQSFNTYGTGLAAFGVGQFKIYGANVNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="125801" PGL_stop="123349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125801" e_stop="125684"/>
            <exon e_start="125438" e_stop="123349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125801" e_stop="125684" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125438" e_stop="123349" e_length="2090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125801" stop="125684"/>
              <exon start="125438" stop="123349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125771" stop="125684"/>
              <exon start="125438" stop="124962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124614" stop="123802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT : GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</gDNA_template>
            <first_frame> I  L  L  F  T  F  S  L  F  I  S  V  S  H  Q  R  N  A  H  *  N  S  S  S  S  L  H  L  T  S  S  S  V  L  T  T  I  F  Q   : C  C  C  R  W  R  W  *  I  W  *  P  I  Y  T  Q  R  L  S  D  *  V  L  E  E  T  N  L  K  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  T  H  H  T  A  P  Y  L  L  L  F  S  K  S  H  V  C  T  R  S  V  T  K  S  *  K  T  Q  W  R  Y  P  F  C  H  L  Q  *  Q  K  L  Y  Q  L  W  N  Q  *  T  W  N  W  S  *  H  F  Q  E  L  L  *  R  R  K  H  P  C  K  F  F  Q  A  I  W  *  R  F  S  P  *  Q  *  I  *  Q  L  R  L  *  W  Q  C  Y  *  P  K  F  Q  F  L  *  H  K  Y  C  W  R  F  R  Q  I  H  K  L  R  G  E  C  Q  *  P  Q  S  A  F  H  F  L  F  R  S  R  N  R  R  C  T  E  I  H  N  I  L  T  R  S  Q  C  W  *  P  V  F  Q  K  L  R  Q  K  W  E  W  C  *  W  *  I  R  Q  L  W  K  *  H  K  C  Y  R  L  N  I  Y  K  L  W  S  D  S  K  W  G  R  P  K  I  H  I  L  W  F  Q  R  Q  C  S  *  K  S  F  H  Q  L  W  C  W  R  *  W  S  I  *  N  F  *  *  L  Q  R  S  I  E  C  W  R  *  H  I  H  Y  L  C  *  G  C  K  W  R  *  S  E  F  H  Q  L  W  S  I  I  Q  *  R  Y  *  C  I  H  Y  L  R  Q  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  Q  H  F  Q  R  L  C  Q  R  Y  C  Y  I  F  Q  L  P  Q  Q  N  F  P  S  F  S  I  V  D  G  G  Q  R  W  *  K  G  E  *  P  V  G  *  A  R  K  V  F  P  G  E  D  V  E  E  W  Y  N  H  A  Y  A  R  Y  K  G  *  D  A  *  K  V  L  F  A  P  G  D  C  F  Q  I  T  I  F  Y  F  K  N  C  *  A  E  E  N  L  P  R  R  *  *  V  S  G  G  E  D  D  R  R  C  I  E  *  V  *  K  S  T  E  R  R  *  D  E  T  M  C  *  F  S  *  R  Y  D  *  F  R  N  I  S  V  G  S  K  R  R  R  S  N  D  *  G  Y  K  R  I  K  W  E  Y  H  D  W  I  S  Q  R  N  Q  R  W  K  S  Y  *  I  S  I  M  S  S  N  A  V  P  L  L  T  V  L  L  S  F  G  S  *  S  P  G  L  R  S  G  Y  F  G  P  E  F  K  G  *  D  Q  S  W  C  R  D  L  P  R  G  Y  I  F  M  G  T  E  S  R  S  V  C  R  T  R  V  G  T  R  E  N  R  S  L  S  L  D  L  *  E  *  Y  D  L  G  N  C  *  L  R  K  K  K  E  M  K  *  Y  A  K  F  L  I  R  V  E  P  G  V  L  Q  E  E  E  K  R  Y  H  W  F  D  F  Y  S  N  Y  Y  Y  Y  S  L  N  L  Y  F  E  *  F  S  C  K  F  L  F  A  F  I  K  Y  E  W  L  S  I  Y  T  I  C  Y  V  I  I  L  L  L  T  H  I  *  A  R  *  C  S  Y  C  Q  M </first_frame>
            <second_frame>  F  Y  S  S  P  S  L  S  S  S  L  F  H  T  K  E  M  H  T  K  I  H  L  P  P  C  I  L  L  L  L  L  F  S  L  P  S  F  N  :  V  V  V  G  G  D  G  E  S  G  N  P  F  T  P  K  G  Y  L  I  R  Y  W  K  K  Q  I  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  L  T  T  Q  L  H  T  F  C  S  S  A  N  L  M  C  A  P  D  L  S  P  S  L  E  K  H  S  G  D  I  H  F  A  T  Y  S  D  K  N  F  T  N  Y  G  T  N  E  P  G  I  G  V  N  T  F  K  N  Y  S  E  G  E  N  I  P  V  N  S  F  R  R  Y  G  R  G  S  P  R  D  N  K  F  D  N  Y  A  S  D  G  N  V  I  D  Q  S  F  N  S  Y  S  T  S  T  A  G  G  S  G  K  F  T  N  Y  A  A  N  A  N  D  P  N  L  H  F  T  S  Y  S  D  Q  G  T  G  G  V  Q  K  F  T  I  Y  S  Q  E  A  N  A  G  D  Q  Y  F  K  S  Y  G  K  N  G  N  G  A  N  G  E  F  V  S  Y  G  N  D  T  N  V  I  G  S  T  F  T  N  Y  G  Q  T  A  N  G  G  D  Q  K  F  T  S  Y  G  F  N  G  N  V  P  E  N  H  F  T  N  Y  G  A  G  G  N  G  P  S  E  T  F  N  S  Y  R  D  Q  S  N  V  G  D  D  T  F  T  T  Y  V  K  D  A  N  G  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  T  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  V  L  A  S  L  M  E  V  N  G  G  K  K  V  N  N  R  W  V  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M  P  D  I  K  D  K  M  P  K  R  S  F  L  P  R  V  I  A  S  K  L  P  F  S  T  S  K  I  A  E  L  K  K  I  F  H  A  G  D  E  S  Q  V  E  K  M  I  G  D  A  L  S  E  C  E  R  A  P  S  A  G  E  T  K  R  C  V  N  S  A  E  D  M  I  D  F  A  T  S  V  L  G  R  N  V  V  V  R  T  T  E  D  T  K  G  S  N  G  N  I  M  I  G  S  V  K  G  I  N  G  G  K  V  T  K  S  V  S  C  H  Q  T  L  Y  P  Y  L  L  Y  Y  C  H  S  V  P  K  V  R  V  Y  E  A  D  I  L  D  P  N  S  K  V  K  I  N  H  G  V  A  I  C  H  V  D  T  S  S  W  G  P  S  H  G  A  F  V  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  T  W  A  I  A  D  *  E  K  K  K  K  *  N  N  M  Q  N  F  *  F  G  S  N  R  V  C  Y  K  K  K  K  K  G  T  T  G  L  T  F  I  V  I  I  I  I  I  V  L  I  Y  I  L  S  N  F  R  V  S  F  S  L  P  S  L  S  M  N  G  Y  Q  F  T  L  F  V  M  *  S  F  Y  C  *  L  I  F  E  Q  G  N  V  V  I  A  R   </second_frame>
            <third_frame>   S  T  L  H  L  L  S  L  H  L  C  F  T  P  K  K  C  T  L  K  F  I  F  L  P  A  S  Y  F  F  F  C  S  H  Y  H  L  S  M :   L  L  *  V  E  M  V  N  L  V  T  H  L  H  P  K  V  I  *  L  G  T  G  R  N  K  S  Q  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  P  H  S  S  I  P  F  A  L  Q  Q  I  S  C  V  H  Q  I  C  H  Q  V  L  K  N  T  V  E  I  S  I  L  P  L  T  V  T  K  T  L  P  I  M  E  P  M  N  L  E  L  E  L  T  L  S  R  T  T  L  K  E  K  T  S  L  *  I  L  S  G  D  M  V  E  V  L  P  V  T  I  N  L  T  I  T  P  L  M  A  M  L  L  T  K  V  S  I  P  I  A  Q  V  L  L  E  V  Q  A  N  S  Q  I  T  R  R  M  P  M  T  P  I  C  I  S  L  P  I  P  I  K  E  Q  E  V  Y  R  N  S  Q  Y  T  H  K  K  P  M  L  V  T  S  I  S  K  V  T  A  K  M  G  M  V  L  M  V  N  S  S  A  M  E  M  T  Q  M  L  S  A  Q  H  L  Q  I  M  V  R  Q  Q  M  G  E  T  K  N  S  H  L  M  V  S  T  A  M  F  L  K  I  I  S  P  T  M  V  L  E  V  M  V  H  L  K  L  L  I  V  T  E  I  N  R  M  L  E  M  T  H  S  L  P  M  L  R  M  Q  M  A  V  K  R  I  S  P  T  M  V  N  H  S  M  K  V  L  M  Y  S  L  L  T  A  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  T  T  L  S  K  I  M  S  K  I  L  L  H  F  P  I  T  T  T  K  L  P  K  F  *  H  R  *  W  R  S  T  V  V  K  R  *  I  T  G  G  L  S  P  E  S  F  S  G  R  R  C  *  R  V  V  Q  S  C  L  C  Q  I  *  R  I  R  C  L  K  G  P  F  C  P  G  *  L  L  P  N  Y  H  F  L  L  Q  K  L  L  S  *  R  K  S  S  T  P  V  M  S  L  R  W  R  R  *  S  A  M  H  *  V  S  V  K  E  H  R  A  P  V  R  R  N  D  V  L  I  Q  L  K  I  *  L  I  S  Q  H  Q  C  W  V  E  T  S  S  F  E  R  L  R  I  Q  K  D  Q  M  G  I  S  *  L  D  Q  S  K  E  S  T  V  E  K  L  L  N  Q  Y  H  V  I  K  R  C  T  L  T  Y  C  I  T  V  I  R  F  L  K  S  G  S  T  K  R  I  F  W  T  R  I  Q  R  L  R  S  I  M  V  S  R  F  A  T  W  I  H  L  H  G  D  R  V  T  E  R  L  S  H  S  G  R  D  P  G  K  *  K  F  V  I  G  S  L  R  M  I  *  L  G  Q  L  L  I  E  K  K  K  R  N  E  I  I  C  K  I  S  N  S  G  R  T  G  C  V  T  R  R  R  K  K  V  P  L  V  *  L  L  *  *  L  L  L  L  *  S  *  F  I  F  *  V  I  F  V  *  V  S  L  C  L  H  *  V  *  M  A  I  N  L  H  Y  L  L  C  N  H  F  I  V  D  S  Y  L  S  K  V  M  *  L  L  P  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125800" stop="125684"/>
                    <exon start="125438" stop="123615"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1938</number_coding_nucleotides>
                  <number_encoded_amino_acids>646</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYSSPSLSSSLFHTKEMHTKIHLPPCILLLLLFSLPSFNVVVGGDGESGNPFTPKGYLIRYWKKQISNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALTTQLHTFCSSANLMCAPDLSPSLEKHSGDIHFATYSDKNFTNYGTNEPGIGVNTFKNYSEGENIPVNSFRRYGRGSPRDNKFDNYASDGNVIDQSFNSYSTSTAGGSGKFTNYAANANDPNLHFTSYSDQGTGGVQKFTIYSQEANAGDQYFKSYGKNGNGANGEFVSYGNDTNVIGSTFTNYGQTANGGDQKFTSYGFNGNVPENHFTNYGAGGNGPSETFNSYRDQSNVGDDTFTTYVKDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQVLASLMEVNGGKKVNNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="141167" PGL_stop="142926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141167" e_stop="141259"/>
            <exon e_start="141710" e_stop="142926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.995" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="141167" e_stop="141259" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.995">
            <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="141710" e_stop="142926" e_length="1217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141167" stop="141259"/>
              <exon start="141710" stop="142926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTCTATTTCACACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAAT : ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</gDNA_template>
            <first_frame> L  S  L  F  H  T  K  E  M  H  N  K  I  L  V  S  S  Y  I  L  L  V  L  L  F  S  L  S  S  F  N  :  I  V  V  A  K  D  G  D  E  S  G  N  P  F  T  P  K  G  Y  V  I  R  Y  W  N  K  H  V  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  L  S  T  H  L  Q  S  F  C  S  S  A  N  L  M  C  A  P  D  L  L  P  S  L  E  K  H  T  G  D  I  H  F  T  T  Y  G  N  K  N  F  T  N  Y  G  T  N  E  P  G  I  G  V  N  T  F  K  N  Y  S  E  D  A  S  V  N  S  F  R  R  Y  G  R  G  S  P  R  D  N  K  F  D  N  Y  A  P  D  G  N  V  I  D  Q  S  F  N  S  Y  S  T  N  T  P  G  G  S  G  Q  F  T  N  Y  A  P  N  T  N  V  P  D  L  R  F  T  A  Y  S  D  Q  G  T  G  G  E  Q  E  F  K  T  Y  L  E  Q  G  N  S  G  G  Q  S  F  K  S  Y  G  K  N  G  N  G  A  D  S  K  F  T  S  Y  G  N  E  T  N  V  A  A  S  T  F  K  N  Y  G  Q  N  A  N  G  E  N  Q  N  F  T  S  Y  S  T  N  G  N  N  P  Q  N  N  F  K  N  Y  G  V  G  G  N  G  P  S  E  T  F  T  N  Y  R  D  E  S  N  V  G  D  D  K  F  S  N  Y  V  K  D  A  N  A  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  I  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  D  L  A  S  L  S  E  V  N  G  G  K  K  V  N  N  R  W  I  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M   </first_frame>
            <second_frame>  S  L  Y  F  T  Q  K  K  C  I  T  K  F  L  F  L  P  T  S  Y  L  F  F  C  S  H  Y  H  L  S  I :   L  L  W  L  K  M  E  M  N  L  G  T  R  L  R  Q  K  V  M  *  L  D  T  G  I  N  M  C  R  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  L  H  T  S  N  P  F  A  L  Q  Q  I  S  C  A  R  L  I  C  Y  Q  V  S  K  N  T  L  E  I  S  I  L  L  L  T  A  T  K  T  S  P  I  M  V  P  T  N  L  E  S  E  L  T  P  S  K  T  I  L  K  M  H  L  *  I  L  S  D  V  T  V  E  V  L  P  V  I  I  N  L  I  I  T  P  L  M  A  M  *  L  T  K  V  S  I  P  I  A  Q  I  L  Q  G  V  L  A  N  S  L  I  T  P  R  I  P  M  S  L  I  Y  V  S  L  P  I  P  I  K  E  Q  A  G  N  K  N  L  K  L  I  *  N  R  G  I  L  V  A  S  L  S  K  A  M  A  K  M  E  M  V  L  I  V  N  S  P  A  M  G  T  K  L  M  L  Q  P  Q  H  L  K  T  M  V  K  M  Q  M  G  R  I  K  I  L  H  L  I  V  L  M  A  I  I  L  K  T  I  S  K  T  T  A  L  E  V  M  V  H  L  R  L  L  L  T  T  E  M  N  R  M  L  V  M  T  S  L  V  T  M  L  R  M  Q  M  L  V  K  L  I  S  P  I  M  V  N  R  S  M  K  V  P  M  Y  S  L  L  T  E  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  I  T  H  S  K  I  M  S  K  I  Q  L  H  F  P  I  T  T  T  K  L  R  R  I  *  L  R  *  V  R  L  T  V  A  K  R  *  I  T  G  G  L  S  P  G  S  F  S  V  R  R  C  *  R  V  V  Q  S  C  L  C  </second_frame>
            <third_frame>   L  S  I  S  H  K  R  N  A  *  Q  N  S  C  F  F  L  H  L  T  C  S  F  V  L  T  I  I  F  Q   : Y  C  C  G  *  R  W  R  *  I  W  E  P  V  Y  A  K  R  L  C  D  *  I  L  E  *  T  C  V  E  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  T  L  Y  T  P  P  I  L  L  L  F  S  K  S  H  V  R  A  *  S  V  T  K  S  R  K  T  H  W  R  Y  P  F  Y  Y  L  R  Q  Q  K  L  H  Q  L  W  Y  Q  R  T  W  N  R  S  *  H  L  Q  K  L  F  *  R  C  I  C  K  F  F  Q  T  L  R  *  R  F  S  P  *  *  *  I  *  *  L  R  P  *  W  Q  C  N  *  P  K  F  Q  F  L  *  H  K  Y  S  R  G  F  W  P  I  H  *  L  R  P  E  Y  Q  C  P  *  S  T  F  H  C  L  F  R  S  R  N  R  R  G  T  R  I  *  N  L  F  R  T  G  E  F  W  W  P  V  F  Q  K  L  W  Q  K  W  K  W  C  *  *  *  I  H  Q  L  W  E  R  N  *  C  C  S  L  N  I  *  K  L  W  S  K  C  K  W  G  E  S  K  F  Y  I  L  *  Y  *  W  Q  *  S  S  K  Q  F  Q  K  L  R  R  W  R  *  W  S  I  *  D  F  Y  *  L  Q  R  *  I  E  C  W  *  *  Q  V  *  *  L  C  *  G  C  K  C  W  *  S  *  F  H  Q  L  W  S  I  V  Q  *  R  Y  R  C  I  H  Y  L  R  K  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  *  H  I  Q  R  L  C  Q  R  Y  S  Y  I  F  Q  L  P  Q  Q  N  F  A  G  F  S  F  V  E  *  G  *  R  W  Q  K  G  E  *  Q  V  D  *  A  R  E  V  F  P  *  E  D  V  E  E  W  Y  N  H  A  Y  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141167" stop="141259"/>
                    <exon start="141710" stop="142924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLFHTKEMHNKILVSSYILLVLLFSLSSFNIVVAKDGDESGNPFTPKGYVIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALSTHLQSFCSSANLMCAPDLLPSLEKHTGDIHFTTYGNKNFTNYGTNEPGIGVNTFKNYSEDASVNSFRRYGRGSPRDNKFDNYAPDGNVIDQSFNSYSTNTPGGSGQFTNYAPNTNVPDLRFTAYSDQGTGGEQEFKTYLEQGNSGGQSFKSYGKNGNGADSKFTSYGNETNVAASTFKNYGQNANGENQNFTSYSTNGNNPQNNFKNYGVGGNGPSETFTNYRDESNVGDDKFSNYVKDANAGEANFTNYGQSFNEGTDVFITYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="143768" PGL_stop="143445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143768" e_stop="143445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="143768" e_stop="143445" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143768" stop="143445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAATATTCATACTATTCGAAATACCTGTGAATTCATTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGA</gDNA_template>
            <first_frame> N  K  I  F  I  L  F  E  I  P  V  N  S  L  *  *  I  C  I  Q  F  I  I  S  P  S  W  T  N  K  S  E  H  S  Y  L  G  E  D  I  T  L  S  K  Y  R  E  I  T  *  Q  M  *  I  D  S  F  N  T  F  G  *  N  P  N  K  K  M  *  I  F  I  K  I  P  F  F  P  R  L  N  L  Q  L  P  K  S  C  H  S  Q  R  S  S  D  K  P  L  F  S  R  V  L  T  R  V  Q  * </first_frame>
            <second_frame>  I  K  Y  S  Y  Y  S  K  Y  L  *  I  H  Y  N  K  Y  A  Y  S  L  L  F  L  L  H  G  Q  I  K  V  N  I  V  T  *  G  R  I  L  L  C  P  N  I  E  R  L  H  N  K  C  K  S  T  V  L  I  H  S  V  K  T  Q  T  R  K  C  K  Y  L  L  K  S  R  F  S  P  G  L  I  C  S  C  P  S  H  V  I  L  K  D  P  V  T  N  L  Y  F  P  G  S  *  P  E  C  N   </second_frame>
            <third_frame>   *  N  I  H  T  I  R  N  T  C  E  F  I  I  I  N  M  H  T  V  Y  Y  F  S  F  M  D  K  *  K  *  T  *  L  L  R  G  G  Y  Y  F  V  Q  I  *  R  D  Y  I  T  N  V  N  R  Q  F  *  Y  I  R  L  K  P  K  Q  E  N  V  N  I  Y  *  N  P  V  F  P  Q  A  *  S  A  V  A  Q  V  M  S  F  S  K  I  Q  *  Q  T  S  I  F  P  G  P  D  P  S  A  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143659" stop="143459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRILLCPNIERLHNKCKSTVLIHSVKTQTRKCKYLLKSRFSPGLICSCPSHVILKDPVTNLYFPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="145573" PGL_stop="146877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145573" e_stop="145647"/>
            <exon e_start="146377" e_stop="146877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145573" e_stop="145647" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="145648" i_stop="146376" i_length="729"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="146377" e_stop="146877" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145573" stop="145647"/>
              <exon start="146377" stop="146877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGAT : GTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAAAGTTTCAACAGCTATAGCACAAATACT</gDNA_template>
            <first_frame> K  E  M  H  T  K  I  L  L  P  S  C  I  L  L  L  L  L  F  T  L  S  S  L  D  :  V  V  V  A  K  D  G  D  E  S  G  N  P  F  T  P  K  G  Y  L  I  R  Y  W  N  K  H  V  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  F  T  T  H  L  Q  S  F  C  S  S  A  N  L  M  C  A  L  D  L  L  P  S  L  E  K  H  K  G  D  V  H  F  V  S  Y  G  D  K  N  F  T  N  Y  G  T  K  E  S  G  L  G  F  N  S  F  K  N  Y  T  E  E  E  N  F  P  V  N  S  F  R  R  Y  G  R  D  S  P  H  D  N  Q  F  D  N  Y  G  A  P  G  G  N  T  P  V  Q  S  F  N  S  Y  S  T  N  T </first_frame>
            <second_frame>  K  K  C  I  P  K  F  F  F  L  P  A  S  Y  F  F  F  C  S  H  Y  H  L  W  M :   L  L  W  L  K  M  E  M  N  L  G  T  R  L  R  Q  K  V  I  *  L  D  T  G  I  N  M  S  Q  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  L  H  T  S  N  P  F  A  L  Q  Q  I  S  C  V  R  L  I  C  Y  Q  V  L  K  N  T  K  E  M  S  I  L  S  L  T  V  T  R  T  L  P  I  T  V  P  K  N  L  V  S  D  S  T  L  S  R  T  I  Q  R  K  K  I  S  L  *  I  L  S  G  A  T  V  E  I  L  L  M  I  I  N  L  T  T  M  V  P  L  V  A  I  R  L  S  K  V  S  T  A  I  A  Q  I   </second_frame>
            <third_frame>   R  N  A  Y  Q  N  S  S  S  F  L  H  L  T  S  S  F  V  H  T  I  I  F  G   : C  C  C  G  *  R  W  R  *  I  W  E  P  V  Y  A  K  R  L  S  D  *  I  L  E  *  T  C  L  K  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  I  H  Y  T  P  P  I  L  L  L  F  S  K  S  H  V  C  A  *  F  V  T  K  S  *  K  T  Q  R  R  C  P  F  C  L  L  R  *  Q  E  L  Y  Q  L  R  Y  Q  R  I  W  S  R  I  Q  L  F  Q  E  L  Y  R  G  R  K  F  P  C  E  F  F  Q  A  L  R  *  R  F  S  S  *  *  S  I  *  Q  L  W  C  P  W  W  Q  Y  A  C  P  K  F  Q  Q  L  *  H  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145573" stop="145647"/>
                    <exon start="146377" stop="146877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEMHTKILLPSCILLLLLFTLSSLDVVVAKDGDESGNPFTPKGYLIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNAFTTHLQSFCSSANLMCALDLLPSLEKHKGDVHFVSYGDKNFTNYGTKESGLGFNSFKNYTEEENFPVNSFRRYGRDSPHDNQFDNYGAPGGNTPVQSFNSYSTNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="147207" PGL_stop="148019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147207" e_stop="148019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="147207" e_stop="148019" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147207" stop="148019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</gDNA_template>
            <first_frame> W  R  *  W  S  I  *  G  F  *  *  L  Q  R  S  I  E  C  W  R  *  H  V  H  N  L  C  *  G  C  K  W  R  *  S  E  F  H  Q  L  W  S  I  I  Q  *  R  Y  *  C  I  H  Y  L  R  K  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  Q  H  F  Q  R  L  C  Q  R  Y  C  Y  I  F  Q  L  P  Q  Q  N  F  A  G  F  S  F  V  E  *  G  *  R  W  Q  K  G  E  *  Q  V  D  *  A  R  E  V  F  P  G  E  D  V  E  E  W  Y  N  H  A  Y  A  R  Y  K  G  *  D  A  *  K  V  L  F  A  P  G  D  C  C  E  I  T  F  F  Y  F  K  D  *  *  A  E  E  N  F  P  C  G  Q  *  F  T  G  G  K  D  D  W  R  C  A  E  *  V  *  K  S  T  E  P  W  G  D  E  T  M  C  *  F  S  *  R  Y  D  *  F  R  N  I  S  V  G  S  *  C  G  G  S  N  N  *  E  Y  K  W  I  K  G  E  Y  H  D  W  I  N  K  R  N  Q  W  W  K  S  Y  Q  I  S  I  M  S  S  N  A  V  P  F  L  I  V  L  L  S  F  G  S  *  S  P  S  L </first_frame>
            <second_frame>  G  G  N  G  P  S  E  A  F  N  S  Y  R  D  Q  S  N  V  G  D  D  T  F  T  T  Y  V  K  D  A  N  G  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  T  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  D  L  A  S  L  S  E  V  N  G  G  K  K  V  N  N  R  W  I  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M  P  D  I  K  D  K  M  P  K  R  S  F  L  P  R  A  I  A  A  K  L  P  F  S  T  S  K  I  D  E  L  K  K  I  F  H  A  A  N  D  S  Q  V  A  K  M  I  G  D  A  L  S  E  C  E  R  A  P  S  P  G  E  T  K  Q  C  V  N  S  A  E  D  M  I  D  F  A  T  S  V  L  G  R  N  V  V  V  R  T  T  E  N  T  N  G  S  K  G  N  I  M  I  G  S  I  K  G  I  N  G  G  K  V  T  K  S  V  S  C  H  Q  T  L  Y  P  S  L  L  Y  Y  C  H  S  V  P  K  V  R  V   </second_frame>
            <third_frame>   E  V  M  V  H  L  R  L  L  I  V  T  E  I  N  R  M  L  E  M  T  R  S  Q  P  M  L  R  M  Q  M  A  V  K  R  I  S  P  T  M  V  N  H  S  M  K  V  L  M  Y  S  L  L  T  E  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  T  T  L  S  K  I  M  S  K  I  L  L  H  F  P  I  T  T  T  K  L  R  R  I  *  L  R  *  V  R  L  T  V  A  K  R  *  I  T  G  G  L  S  P  G  S  F  S  G  R  R  C  *  R  V  V  Q  S  C  L  C  Q  I  *  R  I  R  C  L  K  G  P  F  C  P  G  R  L  L  R  N  Y  L  F  L  L  Q  R  L  M  S  *  R  K  F  S  M  R  P  M  I  H  R  W  Q  R  *  L  A  M  R  *  V  S  V  K  E  H  R  A  L  G  R  R  N  N  V  L  I  Q  L  K  I  *  L  I  S  Q  H  Q  C  W  V  V  M  W  W  F  E  Q  L  R  I  Q  M  D  Q  R  G  I  S  *  L  D  Q  *  K  E  S  M  V  E  K  L  P  N  Q  Y  H  V  I  K  R  C  T  L  P  Y  C  I  T  V  I  R  F  L  K  S  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147208" stop="148017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGNGPSEAFNSYRDQSNVGDDTFTTYVKDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 46936 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 28040 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1475 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 05:47:36
-->
