<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-01-30 19:15:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241789" ref_strand="+" ref_description="SGN-E241789 [cLEE-10-M7]">
      <seq>atgtctgatcttcaaggacatcaagacatgaatgagagagaatccagtccgagctaggaacaatagctcaccctgaaatctgacgtgatgaagactggttagagttgcggttgagttgaagacgacggtacgtttgctgcactccacaattaacaaaaagaaaacataaaagtaggggtcagtacaaacacgagtactgagtagatatcatcggccaactcagaatagagaacaatatatatcaaataataaaataaaatcaaccataacacttaacaggtgacaacaacaagtaccataaccattgggcacaacccaagaacatctatgaggactcaagcctccacaccatactcatttgggaaacaggttcattaaattgagtacattaacataattcaagattcattctttttactatcgtggtgtcggaacgtgatactccgatcccctaatgctacgtgtcggttcgtgacacccgatcccctaatactacgtgtcggttcgttacacccgatctcctaatactacgtgccgattcgtgacacccgatccattaatactatgtgtcggttcgtgacacccgatccattaatactacgtgtcggttcgtgacacccgatcccctaacctcattcttttagttcatcaagccttcttttataccaagacatcatcattaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3010" stop="1569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2710" g_stop="2083" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2082" i_stop="1926" i_length="157">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1925" g_stop="1869" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="686" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E241789" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2710" e_stop="2083"/>
          <exon e_start="1925" e_stop="1869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCGAACTTCAA-GACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAACTCACCCTGAAATCTGATGCGATGAAGACTAGCTAGAGTTGCGGTTGAGTTGAAGATGACGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAGGGGTCAGTACAAAACACAAGTACTGAGTAGGTATCATCGGCCAACTAAAAATAGAAAGCAATATATATCAGATAATAAGGTAAAATCAACCATAACACTTAACAGGTAACAACAACAAGTACCATAACCATTGGCCACAACCCAAGCACATCTATGAGGTCTCAAGCCTCCACACCATACCCATTTGGGAATCAGGTTCATTAAATTGAGTATATTAATATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTCGGAACGTGACACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTATGTG-CGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGACACCCGATTCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGATACCCGATCCCCTAATGCTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGTCACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGATTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAA</genome_strand>
        <mrna_strand>ATGTCTGATCTTCAAGGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGACGTGATGAAGACTGGTTAGAGTTGCGGTTGAGTTGAAGACGACGGTACGTTTGCTGCACTCCACAATTAACAAAAAGAAAACATAAAAGTAGGGGTCAGTAC-AAACACGAGTACTGAGTAGATATCATCGGCCAACTCAGAATAGAGAACAATATATATCAAATAATAAAATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGAACATCTATGAGGACTCAAGCCTCCACACCATACTCATTTGGGAAACAGGTTCATTAAATTGAGTACATTAACATAATTCAAGATTCATTCTTTTTACTATCGTGGTGTCGGAACGTGATACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTTACACCCGATCTCCTAATACTACGTGCCGATTCGTGACACCCGATCCATTAATACTATGTGTCGGTTCGTGACACCCGATCCATTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTA.............................................................................................................................................................ACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGACATCATCATTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15698" stop="14678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15398" g_stop="14976" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15398" e_stop="14976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCAAAAAAC-AAGTGCCAAACAATGAGAAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGACACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGACAATATGCTGTACAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAGTCGCAATTTGAAGTTGGCTGTTAGGGCT-GAATTTTGACTGCGAAAACTGCTC-TCTTTCTCTCTTTTTGGCTGCTGAAAAACTCTCTGTGTATATG</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351362" ref_strand="+" ref_description="SGN-E351362 [cTOS-12-C6]">
      <seq>ggaaacggttgcattgaatcattctaatgttaggtggtatgtttttggagatgatgatacggtttttttcacggagaatttgttgaagacgctatcgaaatatgatcacggattatggtattatatcggatcgaattcggaacattttttgatgaataaagctttttcgtatgaaatggcgtttggtggtgctggaattgctataagttctccgttagctaaagttcttggaaaagtgtttgatgcatgtatcgaaaggtaccctcacctttttggtagtgatgctaggatttattcatgtttggctgaacttggtgttgggttaacccatgaacccggttttcatcagactatttacaggaaaaagacccctgagaattgtactatcacaatggtgtcacctagaagactagaagaaatcagagttgtttcacaaaagttagaaatcgacagaaatcggttgctatcaccaagaagacaatgttgtgatgtgttaccatctacatcaagaaatgttatggatgtcgcgataagagaatgcaaagaagacgaactgatattcatacatccttagttgtggtgacattcaacaagttgatatttgatggcaaatggntgatgggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="18602" stop="21711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18902" g_stop="19250" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19251" i_stop="20391" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20392" g_stop="20502" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="460" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21245" g_stop="21411" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="627" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E351362" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18902" e_stop="19250"/>
          <exon e_start="20392" e_stop="20502"/>
          <exon e_start="21245" e_stop="21411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAGGTACATTTCTATCGAAATTTTAAAAGTTTGACCAAACATATTATCGAGTCTATTTTAACTAGTTAAAAATGTTACTTACATCATTTTCTATGTTACCTTATTAGAATTGGGTATGATTTGTTACTTCCTCTGTTCCATTTATACATAAAAAATGTGGCTCATTTTAACTTAATTTTAATTGATATTTCAATTTTGAGTGTGTATAGGTAGATTCTGTATATAATTAGACAAGTAGACATACACATCCTACGCAGTGGTGGACCCAGAAATTTTATAAAGGATGTCCAAAATTAGCAATTTATTATGTTAAGAATGTCCAAAATATGTTATTTAATCATTTTACTTGTATATATGCATTTTTTTTCTGACAAAGGGTGTCCAAAATTGGACCTTACCACTATGTGGCTAGGTCGTACGTGACATCCTACATGACGTCCTATGTTGATTAAGTCACGTAGGATATGTATGTCTACATGTTCAACTTTATACAAGTTTAAATATCTACTTATACACATTCAAAATTGGAGGAAATATATGTCAGAACATATTATGTCGTTCCATTTTATTAGCACTTAATAGTTGGTTTCAGAAAATGTTAAAATTTGCTAGTAATTGGAATAAATGAAGTACTACTATAAGTTTTGTGTAGGTGTTTTTATATTTTTCTAAAAGTTAAGTGACACAAACATTTTTTCTTTTTTGGAATTTGTAATACCAGTTAGATGTAAGAGGAAATATGTTTGGAGTATTGGCTGCACATACACTTAGACCATTGGTCTCTCTGCATCATTTAGAGATGAATGATCCTATATTTCCAAACATGACGAAAATGAAATCTCTAGAGCATTTATACAATGCTGCAAAGTACGATCCTCATCGTATTTTGCAGCAAACAGTATGCTACGATCGTTGGTTTACTTGGACAGTTTCTGTATCGTGGGGATACGCTGTTCAAGTCTTCAGCTACAACATCTTCTTGCCTGATGCTCTACGTATACAGGAGAGTTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGGGTAATGTTCCTCTCTATCAAAACATTTCACTATAACAATCGTCTTTTCTATACATATTATGTTATTGGAGGACAAACAATACTGTTATAGAAAGGTTTGACTTTGCTGCTGAGTATTATTCTGTGTTTACCTTCTGAAACTTTTGGTCTAATCAATGACATATATGTTATATGAGGACAAATAGTATTGTTATAGAAAGGTTTGACTATACTGCTGAGTATAATTCTGTGTTTACTTTCTGAAACATTTGGTCAATGACATCTTATGTTATATGAGGACAAACGATACTGTTATAGATAGGTTTGATTGTAATGTTGAGTACCCTTCTGTGTTTTCTTTCTGAAACTTTTGGTCTAATCAATGGCATATTATGTTATATATGAGGATGAACAATACTGTTATAAAAAGGTTTGACCGTACTGTTGAGTACAATTCTATGTTTACTTTCTGAAACATTTGGTCGATGGCATCTTATGTTACATGATGTTACAGATAGATTTGACTGTACTGCTGAATACCATTCTGTGTTTATAAGGATAAACGATACTGTTATAGATAGGTTTGATTGTACTGTGTTGAGTACCATTCTATGTTTACTTTCTGAAACATTTGGTCAATGACATATTATGTTATATGAGGACAAACGATACTGTTATAGAAAGGTTTGACTGTACTATTGAGTATCATTTTGTGTTTACTTTGTGAAACATTTGGTCTGATAAATGACATATTATATATGCAGTTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATAT</genome_strand>
        <mrna_strand>GGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATGGNTGATGGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349288" ref_strand="+" ref_description="SGN-E349288 [cTOS-2-J18]">
      <seq>ttattttccgtggcaaacgagtgatttagctagacattatgactttgatacaaggccatatgaacctgatccttgtaaaagacagcttgtttattttctacataatgtgtctactggaattaatggacagatcaagactatttacaggaaaaagacccctgagaattgtactatcacaatggtgtcacctagaagactagaagaaatcagagttgtttcacaaaagttagaaatcgacagaaatcggttgctatcaccaagaagacaatgttgtgatgtgttaccatctacatcaagaaatgttatggatgtcgcgataagagaatgcaaagaagacgaactgatattcatacatccttagttgtggtgacattcaacaagttgatatttgatggcaaattggtgatgggatatgaaggatttataagaacagaggattttcgcggttatccccaattaagccaatactattttgctttctctaagcataacatctactctcctttgcttgtgaagttgatttaggaaagcagtttaggaaatttaagtatgaacttagtaggattagagtgtacttaaggaaaatggaattataattatatagtatgtaactacaaagctatgcacatctgcataagcaatcaaatgtgaagaaacttgggagttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19956" stop="21976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20256" g_stop="20502" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21245" g_stop="21676" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="679" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E349288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20256" e_stop="20502"/>
          <exon e_start="21245" e_stop="21676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGGGTAATGTTCCTCTCTATCAAAACATTTCACTATAACAATCGTCTTTTCTATACATATTATGTTATTGGAGGACAAACAATACTGTTATAGAAAGGTTTGACTTTGCTGCTGAGTATTATTCTGTGTTTACCTTCTGAAACTTTTGGTCTAATCAATGACATATATGTTATATGAGGACAAATAGTATTGTTATAGAAAGGTTTGACTATACTGCTGAGTATAATTCTGTGTTTACTTTCTGAAACATTTGGTCAATGACATCTTATGTTATATGAGGACAAACGATACTGTTATAGATAGGTTTGATTGTAATGTTGAGTACCCTTCTGTGTTTTCTTTCTGAAACTTTTGGTCTAATCAATGGCATATTATGTTATATATGAGGATGAACAATACTGTTATAAAAAGGTTTGACCGTACTGTTGAGTACAATTCTATGTTTACTTTCTGAAACATTTGGTCGATGGCATCTTATGTTACATGATGTTACAGATAGATTTGACTGTACTGCTGAATACCATTCTGTGTTTATAAGGATAAACGATACTGTTATAGATAGGTTTGATTGTACTGTGTTGAGTACCATTCTATGTTTACTTTCTGAAACATTTGGTCAATGACATATTATGTTATATGAGGACAAACGATACTGTTATAGAAAGGTTTGACTGTACTATTGAGTATCATTTTGTGTTTACTTTGTGAAACATTTGGTCTGATAAATGACATATTATATATGCAGTTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAAAA</genome_strand>
        <mrna_strand>TTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349721" ref_strand="+" ref_description="SGN-E349721 [cTOS-3-P14]">
      <seq>ttattttccgtggcaaacgagtgatttagctagacattatgactttgatacaaggccatatgaacctgatccttgtaaaagacagcttgtttattttctacataatgtgtctactggaattaatggacagatcaagactatttacaggaaaaagacccctgagaattgtactatcacaatggtgtcacctagaagactagaagaaatcagagttgtttcacaaaagttagaaatcgacagaaatcggttgctatcaccaagaagacaatgttgtgatgtgttaccatctacatcaagaaatgttatggatgtcgcgataagagaatgcaaagaagacgaactgatattcatacatccttagttgtggtgacattcaacaagttgatatttgatggcaaattggtgatgggatatgaaggatttataagaacagaggattttcgcggttatccccaattaagccaatactattttgctttctctaagcataacatctactctcctttgcttgtgaagttgatttaggaaagcagtttaggaaatttaagtatgaacttagtaggattagagtgtacttaaggaaaatggaattataattatatagtatgtaactacaaagctatgcacatctgcataagcaatcaaatgtgaagaaacttgggagttaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19956" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20256" g_stop="20502" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21245" g_stop="21674" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="677" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E349721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20256" e_stop="20502"/>
          <exon e_start="21245" e_stop="21674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGGGTAATGTTCCTCTCTATCAAAACATTTCACTATAACAATCGTCTTTTCTATACATATTATGTTATTGGAGGACAAACAATACTGTTATAGAAAGGTTTGACTTTGCTGCTGAGTATTATTCTGTGTTTACCTTCTGAAACTTTTGGTCTAATCAATGACATATATGTTATATGAGGACAAATAGTATTGTTATAGAAAGGTTTGACTATACTGCTGAGTATAATTCTGTGTTTACTTTCTGAAACATTTGGTCAATGACATCTTATGTTATATGAGGACAAACGATACTGTTATAGATAGGTTTGATTGTAATGTTGAGTACCCTTCTGTGTTTTCTTTCTGAAACTTTTGGTCTAATCAATGGCATATTATGTTATATATGAGGATGAACAATACTGTTATAAAAAGGTTTGACCGTACTGTTGAGTACAATTCTATGTTTACTTTCTGAAACATTTGGTCGATGGCATCTTATGTTACATGATGTTACAGATAGATTTGACTGTACTGCTGAATACCATTCTGTGTTTATAAGGATAAACGATACTGTTATAGATAGGTTTGATTGTACTGTGTTGAGTACCATTCTATGTTTACTTTCTGAAACATTTGGTCAATGACATATTATGTTATATGAGGACAAACGATACTGTTATAGAAAGGTTTGACTGTACTATTGAGTATCATTTTGTGTTTACTTTGTGAAACATTTGGTCTGATAAATGACATATTATATATGCAGTTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAA</genome_strand>
        <mrna_strand>TTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354926" ref_strand="+" ref_description="SGN-E354926 [cTOS-19-O17]">
      <seq>agtgatttagctagacattatgactttgatacaaggccatatgaacctgatccttgtaaaagacagcttgtttattttctacataatgtgtctactggaattaatggacagatcaagactatttacaggaaaaagacccctgagaattgtactatcacaatggtgtcacctagaagactagaagaaatcagagttgtttcacaaaagttagaaatcgacagaaatcggttgctatcaccaagaagacaatgttgtgatgtgttaccatctacatcaagaaatgttatggatgtcgcgataagagaatgcaaagaagacgaactgatattcatacatccttagttgtggtgacattcaacaagttgatatttgatggcaaattggtgatgggatatgaaggatttataagaacagaggattttcgcggttatccccaattaagccaatactattttgctttctctaagcataacatctactctcctttgcttgtgaagttgatttaggaaagcagtttaggaaatttaagtatgaacttagtaggattagagtgtacttaaggaaaatggaattataattatatagtatgtaactacaaagctatgcacatctgcataagcaatcaaatgtgaagaaacttgggagttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19975" stop="21976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20275" g_stop="20502" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21245" g_stop="21676" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="660" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E354926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20275" e_stop="20502"/>
          <exon e_start="21245" e_stop="21676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGGGTAATGTTCCTCTCTATCAAAACATTTCACTATAACAATCGTCTTTTCTATACATATTATGTTATTGGAGGACAAACAATACTGTTATAGAAAGGTTTGACTTTGCTGCTGAGTATTATTCTGTGTTTACCTTCTGAAACTTTTGGTCTAATCAATGACATATATGTTATATGAGGACAAATAGTATTGTTATAGAAAGGTTTGACTATACTGCTGAGTATAATTCTGTGTTTACTTTCTGAAACATTTGGTCAATGACATCTTATGTTATATGAGGACAAACGATACTGTTATAGATAGGTTTGATTGTAATGTTGAGTACCCTTCTGTGTTTTCTTTCTGAAACTTTTGGTCTAATCAATGGCATATTATGTTATATATGAGGATGAACAATACTGTTATAAAAAGGTTTGACCGTACTGTTGAGTACAATTCTATGTTTACTTTCTGAAACATTTGGTCGATGGCATCTTATGTTACATGATGTTACAGATAGATTTGACTGTACTGCTGAATACCATTCTGTGTTTATAAGGATAAACGATACTGTTATAGATAGGTTTGATTGTACTGTGTTGAGTACCATTCTATGTTTACTTTCTGAAACATTTGGTCAATGACATATTATGTTATATGAGGACAAACGATACTGTTATAGAAAGGTTTGACTGTACTATTGAGTATCATTTTGTGTTTACTTTGTGAAACATTTGGTCTGATAAATGACATATTATATATGCAGTTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAAAA</genome_strand>
        <mrna_strand>AGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279240" ref_strand="+" ref_description="SGN-E279240 [cLEL-4-M21](-)">
      <seq>attaataccataatatctttcatagagttcatggggagtcggactatctgaattaatatttataggaccgggacgggaaaaactagtttcattcacatgcgtaaattcatctgtatttattctaacaagaggaattttagatttagacgaactagcacctttgttagtttttttaactaatttttttactgattctactagaccttttttacttccactttttttagaagactccatgatataaaattataaattataaaatacgaaacttaacaagaacaacttacaagttaaataataaatacaaaaaataaatataagattagagagtggaacgaagttaccaaacgtttgtataagaacaaacgattataatgaaaattaaaatattgatgtcgaaacttgaaatttgaagaagattcctcctgggaaatacaccaaatgaccaaatgatataagttatacacttatacttataaatatgaatgtaatttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40657" stop="39572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40357" g_stop="39893" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E279240" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40357" e_stop="39893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTATATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGACGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAC</genome_strand>
        <mrna_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTGGGAAATACACCAAATGACCAAATGATATAAGTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438066" ref_strand="+" ref_description="SGN-E438066 [cSTA-6-E3]">
      <seq>acattttaaatatacatctggtgggagtggaggttcaacggggggattaaaaaaacatttgattaataagcatagtaaagagtggtttgcatatatatcttctcttaatgtttgtgaaaattctaacattgaaacatcggttagagggtcaaatatggttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40324" stop="41152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40624" g_stop="40852" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E438066" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40624" e_stop="40852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGTGGTTTGCATATATGTCTTCTCTTGAAGTTGGTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGAT</genome_strand>
        <mrna_strand>ACATTTTAAATATACATCTGGTGGGAGTGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAATAAGCATAGTAAAGAGTGGTTTGCATATATATCTTCTCTTAATGTTTGTGAAAATTCTAACATTGAAACATCGGTTAGAGGGTCAAATATGGTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447237" ref_strand="+" ref_description="SGN-E447237 [cSTA-25-K24]">
      <seq>gttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgatcgtgaaaattttgctaaaatggttgttgtttgtggtttaccttttagttttggagaacatccgggttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtaaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggtcgtagtcctaatggttttgattatttaactgttactgcgcattggactgattataattggaatttacaaaaaagaattattggttataaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40481" stop="41677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40781" g_stop="41377" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E447237" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40781" e_stop="41377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAATAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGAAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTG</genome_strand>
        <mrna_strand>GTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGATCGTGAAAATTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGACTGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447233" ref_strand="+" ref_description="SGN-E447233 [cSTA-25-K12]">
      <seq>ttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtcaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40618" stop="41380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40918" g_stop="41080" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E447233" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40918" e_stop="41080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAATAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGT</genome_strand>
        <mrna_strand>TTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTCAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561175" ref_strand="+" ref_description="SGN-E561175 [17126]">
      <seq>tgattatttaactgttactgcgcattggactgattataattggaatttacaaaaaagaattattggttataaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttggttgttagtgacggtgtgaaattatttgaaaatagttgtgataaagttgataatgcttgtttttatatttttcatatgaatagtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40798" stop="41981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41098" g_stop="41681" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E561175" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41098" e_stop="41681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGAAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAATGCATTTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAA</genome_strand>
        <mrna_strand>TGATTATTTAACTGTTACTGCGCATTGGACTGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAGTTGATAATGCTTGTTTTTATATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481787" ref_strand="+" ref_description="SGN-E481787 [cSTD-19-D23]">
      <seq>aaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttggttgttagtgacggtgtgaaattatttgaaaatagttgtgataaagttgataatgcttgtttttatatttttcatatgaatagtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaatatttttgaaatcgttttatgatgctactaaaattttttctggaatgtattatcctactatttctgaaattttaatacatatatgtgagatttcatatatctttgctgaatataaaacacatgaattatttaccattgctattgaagttatgattacaaaatttaagaaatatttttttcctatccctcaaatttatttaaactgcattcttttcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40868" stop="42201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41168" g_stop="41900" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E481787" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41168" e_stop="41900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTCAAAAGAAAAAAACCGAAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAATGCATTTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTACTAAAATTTTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTT-AACTGCACTTCTTTTCAACC</genome_strand>
        <mrna_strand>AAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAGTTGATAATGCTTGTTTTTATATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAATATTTTTGAAATCGTTTTATGATGCTACTAAAATTTTTTCTGGAATGTATTATCCTACTATTTCTGAAATTTTAATACATATATGTGAGATTTCATATATCTTTGCTGAATATAAAACACATGAATTATTTACCATTGCTATTGAAGTTATGATTACAAAATTTAAGAAATATTTTTTTCCTATCCCTCAAATTTATTTAAACTGCA-TTCTTTTCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567920" ref_strand="+" ref_description="SGN-E567920 [12121]">
      <seq>gtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaatatttttgaaatcgttttatgatgctactaaaattttttctggaatgtattatcctactatttctgaaattttaatacatatatgtgagatttcatatatctttgctgaatataaaacacatgaattatttaccattgctattgaagttatgattacaaaatttaagaaatatttttttcctatccctcaaatttatttaactgcaattcttttcaaccccgaatataaagaatatggtgcaaaagctttagttgaatgcatttatcaaaatttagatattaaaccagaagaaacactcgatttggtaacatgtcaaaatagtataaaattacttgctaaagaaatgtatgataaatattgttctttagataatgttgaaaatcctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41160" stop="42371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41460" g_stop="42071" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E567920" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41460" e_stop="42071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAATGCATTTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTACTAAAATTTTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTTAACTGCACTTCTTTTCAACCCCGAATATAAAGAATATGGTACAAAAGCTTTAGTTGAATGCATTTATCAGAATTTAGATATTCAACCTGAAGAAGAACCTGATTTGGTAACATATCAAAATAGTATAAAATACTTTGCAAAAGAAATGTATGATAAATATTCATTCTTAGATAATGTTGAAAATCCTCAAA</genome_strand>
        <mrna_strand>GTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAATATTTTTGAAATCGTTTTATGATGCTACTAAAATTTTTTCTGGAATGTATTATCCTACTATTTCTGAAATTTTAATACATATATGTGAGATTTCATATATCTTTGCTGAATATAAAACACATGAATTATTTACCATTGCTATTGAAGTTATGATTACAAAATTTAAGAAATATTTTTTTCCTATCCCTCAAATTTATTTAACTGCAATTCTTTTCAACCCCGAATATAAAGAATATGGTGCAAAAGCTTTAGTTGAATGCATTTATCAAAATTTAGATATTAAACCAGAAGAAACACTCGATTTGGTAACATGTCAAAATAGTATAAAATTACTTGCTAAAGAAATGTATGATAAATATTGTTCTTTAGATAATGTTGAAAATCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426698" ref_strand="-" ref_description="SGN-E426698 [STM-47-E3]">
      <seq>taatactaatagttgtatagtcccgtaaattctttctctaactcagctatagattgaccgtaatcaactactggtcttggtaaagctcgttgacgatcttgaagttccatgccatcgtcactaccacatccaatggcggaatctatgaaaagttcaaattgactatccaactttggaagtccttgatttctccgctcagcatttatccaatctctaaacaacaccgatatctccaaactgtcttctgctaacgaatatctgtggtctccaatttgaaatcttgccgcgctgaaagctgcctccgaagcaactgatgatccttgaattgcaagcacgtccttcaccatcctactaagttttggaaattgagttccacgagccctccaccagttcaataattgtggtataccttcatcgtttgtaatattatctgaaccctgttcaagatatttaacaaattcacatttattagaagagtcaagaccaagtttatgtttcactctaccatgggcacctacctgaggcatagacatttgaggattttcaacattatctaaagaacaatatttatcataaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42903" stop="41727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42603" g_stop="42028" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E426698" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426698" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42603" e_stop="42028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTAGGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCACATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGCTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGATGCCTCCGAAGCTACTGATGATCCTTGAATTGCAAGCACATCCTTCACCATCCTACTAAGTTTTGGATATTGAGCTCCACGATTTCTCCACCAGTTCAATAGTTCCGGTATACCATTATCGTTTGTAATATCATATGTACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCGTCCATGAGCACCTACTTGATTTGTAGACGTTTGAGGATTTTCAACATTATCTAAGAATGAATATTTATCATAC</genome_strand>
        <mrna_strand>TAATACTAATAGTTGTATAGTCCCGTAAATTCTTTCTCTAACTCAGCTATAGATTGACCGTAATCAACTACTGGTCTTGGTAAAGCTCGTTGACGATCTTGAAGTTCCATGCCATCGTCACTACCACATCCAATGGCGGAATCTATGAAAAGTTCAAATTGACTATCCAACTTTGGAAGTCCTTGATTTCTCCGCTCAGCATTTATCCAATCTCTAAACAACACCGATATCTCCAAACTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGCTGCCTCCGAAGCAACTGATGATCCTTGAATTGCAAGCACGTCCTTCACCATCCTACTAAGTTTTGGAAATTGAGTTCCACGAGCCCTCCACCAGTTCAATAATTGTGGTATACCTTCATCGTTTGTAATATTATCTGAACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCTACCATGGGCACCTACCTGAGGCATAGACATTTGAGGATTTTCAACATTATCTAAAGAACAATATTTATCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 [cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41813" stop="42994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42113" g_stop="42694" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42113" e_stop="42694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACATATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCATCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATGTGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGTCTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACCAATAGTTGTAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATT--A--C-A-T-TCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443600" ref_strand="+" ref_description="SGN-E443600 [cSTA-39-C23]">
      <seq>aatttgtattacaaattacaatttacaactattagtagagtgcatagtttacgcagccaccttctaggaagggttctgtttcaactaagcctcaaatgtaatactaatagttgtatagtcccgtaaattctttctctaactcagctatagattgaccgtaatcaactactggtcttggtaaagctcgttgacgatcttgaagttccatgccatcgtcactaccacatccaatggcggaatctatgaaaagttcaaattgactatccaactttggaagtccttgatttctccgctcagcatttattcaatctcttaacaacaccgatatctccaaactgtcttctgctaacgaatatctgtggtctccaatttgaaatcttgccgcgctgaaagctgccttcgaagcaactgatgatccttgaattgcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="43000" stop="41969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42695" g_stop="42277" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="425" r_length="412" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E443600" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42695" e_stop="42277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAATTTACAACTATTGGTAGAGTACATAGCTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTATGTCTCGAGACTCGAATGTAATACTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTAGGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCACATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGCTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGATGCCTCCGAAGCTACTGATGATCCTTGAATT</genome_strand>
        <mrna_strand>AATTACAATTTACAACTATTAGTAGAGTGCATAGTTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTA-------AGCCTCAAATGTAATACTAATAGTTGTATAGTCCCGTAAATTCTTTCTCTAACTCAGCTATAGATTGACCGTAATCAACTACTGGTCTTGGTAAAGCTCGTTGACGATCTTGAAGTTCCATGCCATCGTCACTACCACATCCAATGGCGGAATCTATGAAAAGTTCAAATTGACTATCCAACTTTGGAAGTCCTTGATTTCTCCGCTCAGCATTTATTCAATCTCTTAACAACACCGATATCTCCAAACTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGCTGCCTTCGAAGCAACTGATGATCCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="56036" stop="55227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55736" g_stop="55518" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55736" e_stop="55518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCACACCATATTTCAGGGTGAGCTAAAGCTTCTAGCTTGGACTGGATCTTCCTCTCCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGATGTTTATGTATTTTAGCTTCTTAGATACTCTTAAATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59149" stop="60461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59449" g_stop="60161" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59449" e_stop="60161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAACTCCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGTTCTAATAAAGCCTTTGCTTAGCAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59149" stop="60344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59449" g_stop="60044" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59449" e_stop="60044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59149" stop="60274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59449" g_stop="59974" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59449" e_stop="59974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59220" stop="60498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59520" g_stop="60199" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59520" e_stop="60199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAACTCCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGTTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGTGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59220" stop="60178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59520" g_stop="59878" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59520" e_stop="59878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60141" stop="61071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60441" g_stop="60771" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60441" e_stop="60771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGATAACGTCACAGTTTTAGCATTACAATCAAAAAATGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGAAAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="61070" stop="62387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61369" g_stop="62083" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61369" e_stop="62083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATTCGCTCTTGTGGACTGAAATAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATAAGCAGTAACCGACATCCTACCTTGCTCTAGGCACAAGAACTTATATCTTTTCCTATCTCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCGGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATCGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGGGCATCCATGCGGGGAGCCACAGTAGCCGTATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGAGGCAATTCCTCATTATGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACTGCGCTATTATCAGAT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="61072" stop="62337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61372" g_stop="62035" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61372" e_stop="62035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAATAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATAAGCAGTAACCGACATCCTACCTTGCTCTAGGCACAAGAACTTATATCTTTTCCTATCTCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCGGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATCGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGGGCATCCATGCGGGGAGCCACAGTAGCCGTATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGAGGCAATT-CCTCATTATGTACTTGTTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="62391" stop="61239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62091" g_stop="61539" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62091" e_stop="61539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAG-CCATCTGATAATAGCGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACATAATGAGGAATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATACGGCTACTGTGGCTCCCCGCATGGATGCCCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="62750" stop="61865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62450" g_stop="62165" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62450" e_stop="62165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCAATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTCTTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAAATGGTTAGAACTAGAGCAACGACTGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="63126" stop="62317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62826" g_stop="62608" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62826" e_stop="62608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCACACCACATTTCAGGGTGAGCTAAAGCTTCTAGCTTTGACTGGATCTTTCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTAGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="65853" stop="67193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66153" g_stop="66893" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66153" e_stop="66893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGATACTGGTGCCGCCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTG-CGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="65917" stop="67246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66212" g_stop="66946" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66212" e_stop="66946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTCAAGCGCA-TTTTCCTCATCAAGACGAGTACAAAGGAAAGTTTGCGTCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="65917" stop="67205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66212" g_stop="66906" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66212" e_stop="66906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTCAAGCGCATTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692794" ref_strand="+" ref_description="SGN-E692794 [LH_Ea09K08]">
      <seq>tctttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttatttggattgcactatagtttttctttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90355" stop="88103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90056" g_stop="89839" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88689" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="670" r_length="452" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88688" i_stop="88521" i_length="168">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.495" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88520" g_stop="88403" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="788" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E692794" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90056" e_stop="89839"/>
          <exon e_start="89141" e_stop="88689"/>
          <exon e_start="88520" e_stop="88403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTATATTTTTTTTTCTTTTTTTTAGTTCTCTCTGTTGTCTCAAAGACTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAATGAGCGGATATCAAATTTTTATAGATAAATAAAAAATAAAAGTTGATATTTGGATTGCACTATAGTTTTTCTTTCTTTTTT</genome_strand>
        <mrna_strand>TCTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAG........................................................................................................................................................................CGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTGGATTGCACTATAGTTTTTCTTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696634" ref_strand="+" ref_description="SGN-E696634 [LH_Ea09K08](-)">
      <seq>actttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacccattcatggaattactcctcaatgtaaccaaagatattgagaattaccccatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaaggtttatagataactaaaaaataaaagttgttattttaaagggactatagtttttctttcttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90356" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90056" g_stop="89839" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88569" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="789" r_length="571" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88568" i_stop="88464" i_length="105">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88443" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="810" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E696634" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90056" e_stop="89839"/>
          <exon e_start="89141" e_stop="88569"/>
          <exon e_start="88463" e_stop="88443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTATATTTTTTTTTCTTTTTTTTAGTTCTCTCTGTTGTCTCAAAGACTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAATGAGCGGATATCAAATTTTTATAGATAAATAAAAAATAAAA</genome_strand>
        <mrna_strand>ACTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACCCATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCCCATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAAGGTTTATAGATAACTAAAAAATAAAAGTTGTTATTTTAAAGGGACTATAGTTTTTCTT-TCTTTTTTA.........................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693157" ref_strand="+" ref_description="SGN-E693157 [LH_Ea10J11]">
      <seq>ccttgtgccgaattcggcacgaggtataactttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttatttgaattgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90360" stop="88293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90057" g_stop="89839" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="246" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88590" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="797" r_length="551" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E693157" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90057" e_stop="89839"/>
          <exon e_start="89141" e_stop="88590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTA</genome_strand>
        <mrna_strand>AACTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTGAATTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694161" ref_strand="+" ref_description="SGN-E694161 [LH_Ea03D07](-)">
      <seq>ataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaatttttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaagggagcgaatatctaatttttatagataactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90336" stop="24387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90036" g_stop="89839" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88606" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="734" r_length="536" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E694161" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90036" e_stop="89839"/>
          <exon e_start="89141" e_stop="88606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTC-AAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGT</genome_strand>
        <mrna_strand>ATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAGGGAGCGAATATCTAATTTTTATAGATAACTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689492" ref_strand="+" ref_description="SGN-E689492 [LH_Ea01A18]">
      <seq>catgtagatatatcatatcataaaagaaaaatgagcctccccgtaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatacatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgctattagcgggagtgctttgaaatatcttgaaacaaaaataaaacgagcgaatatctaatttttatacataacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90352" stop="88312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90055" g_stop="89839" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88610" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="748" r_length="531" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E689492" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90055" e_stop="89839"/>
          <exon e_start="89141" e_stop="88610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGG</genome_strand>
        <mrna_strand>CATGTAGATATATCATATCATAAAAGAAAAATGAGCCTCCCCGTAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATACATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGCTATTAGCGGGAGTGCTTTGAAATATCTTGAAACAAAAATAAAACGAGCGAATATCTAATTTTTATACATAACTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690321" ref_strand="+" ref_description="SGN-E690321 [LH_Ea03D07]">
      <seq>tataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaatttttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90336" stop="88312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90037" g_stop="89839" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88611" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="730" r_length="531" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E690321" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90037" e_stop="89839"/>
          <exon e_start="89141" e_stop="88611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTC-AAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAG</genome_strand>
        <mrna_strand>TATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693332" ref_strand="+" ref_description="SGN-E693332 [LH_Ea01A18](-)">
      <seq>gtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatccctgttcatgttgagacaaagggcgaaaataatttagttactttgcccatagaatatgaaaagaaaaatgctaatgtgccagatccacacccattcatggaattactcctcaatgtaaccaaagatattgagaattaccccatcaagtgatccataaatattatacccaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatcctgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtatcccaaatgcttggatttaagctgtttcaaagtcttgtaatgatatgtgttatgattagcgggtgtgctttgaaatatctgggggcgctaaaaggcgagcgaatatctaatttttntnataactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90351" stop="88198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90051" g_stop="89839" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88614" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="738" r_length="525" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E693332" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90051" e_stop="89839"/>
          <exon e_start="89141" e_stop="88614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATA</genome_strand>
        <mrna_strand>GTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCCCTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGCCCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACCCATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCCCATCAAGTGATCCATAAATATTATACCCAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATCCTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATCCCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATGATATGTGTTATGATTAGCGGGTGTGCTTTGAAATATCTGGGGGCGCTAA-AAGGCGAGCGAATATCTAATTTTTNT-NATAACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95424" stop="96509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95724" g_stop="96209" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95724" e_stop="96209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATGGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGTGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGGCTCGTTTAATTGCTAAAGGCTACAATCAGGAGTATGGGTTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95850" stop="96749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96150" g_stop="96449" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96150" e_stop="96449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATTGCTAAAGGCTACAATCAGGAGTATGGGTTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCATG-CCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287991" ref_strand="+" ref_description="SGN-E287991 [cLES-7-K8]">
      <seq>cagataaaaagggagcagaattttgagatctctcgattgaagaggggcttcgaggcatccgaagaggcgcaaagacaattgatcatcgaaagagcaacacttcgccatcaacttgaagcagcagaagggcgagaggccctcttgaggaataatctgggtaatcatcaggctttgttaaatgactgtcatcaaaacatgggaagggctagacttcaagttcatcaactagcagagcaaacctcctatgttattagaaatcagcgccgtatgaatgatcaagaagtggttgagcaagaacggaccattgttccccatttgccgaaggtgtttctgaatttgtatgagaccttgggaggaaaaagaaagccccaagaaagtgatgaagattgaagaaaagttttagttgtttttgttgttcgtttcattttgtttgttgaaagacttagtttctagtttaaaatttggtgtttagggatattatgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="108844" stop="107758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108544" g_stop="108058" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E287991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108544" e_stop="108058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGAT</genome_strand>
        <mrna_strand>CAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244442" ref_strand="+" ref_description="SGN-E244442 [cLEF-3-G20]">
      <seq>atgcgtcaactagccagagttcaagaaatcccacccaatgatgatatgagtaagtttgcatatgacactccaccaagttttgcttttaacagcgaagagattatgaagatttggtacgggagtattatttctgagctaagtgaaatggttgtggagaaagataaaggaaaggtggttcctgggtacctatcgtggtttcgtgatccgatgacatttggtgacactcctgaaggatccagcagaaaaagaagagatcaacatataataagacaattgaaaaaagagttggagaaggccaaagcaaccattgcacggctagaagtacaagtccaaagaagaaaaaatcacaagttagagttgcaagatgtggaaggagaattgaagcatgcagagggaagactagcccgatttggaggaggaattggataatagaatccacttggcacgacagataaaaagggagcagaattttgagatctctcgattgaagagggggtttcaggcatccgaagaggcgcaaagacaattgatcatcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="109291" stop="108154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108991" g_stop="108454" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E244442" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108991" e_stop="108454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAGGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCAAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGA-TTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAA</genome_strand>
        <mrna_strand>ATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAAGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCTAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGATTTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGGTTTCAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311061" ref_strand="+" ref_description="SGN-E311061 [cLEZ-17-F20]">
      <seq>aaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127094" stop="128206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127394" g_stop="127906" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E311061" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127394" e_stop="127906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</genome_strand>
        <mrna_strand>AAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309030" ref_strand="+" ref_description="SGN-E309030 [cLEZ-1-C23](-)">
      <seq>attataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127104" stop="128119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127404" g_stop="127819" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E309030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127404" e_stop="127819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGG</genome_strand>
        <mrna_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309029" ref_strand="+" ref_description="SGN-E309029 [cLEZ-1-C23]">
      <seq>ttataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127105" stop="128291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127405" g_stop="128000" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-E309029" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127405" e_stop="128000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAATCTAAGACT</genome_strand>
        <mrna_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266076" ref_strand="+" ref_description="SGN-E266076 [cLEI-6-E24]">
      <seq>aatgtcactagtaagacaagtacattagtgaactgaaaacagaacaattacataaacaattcttgtaccattaaatatcacataaataatctttccaaaaggaaagcttcaaatacatatatgatcacacaatacacaatacatttttaacaagcctcgtgctcaaggctttttaggcacttaaggcattttcggctttgacaaagttggcaattcaagcttaggaatgacaggaatctcgagttttggtaaagttggaagttcaacctttgaaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-AHkHv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128271" stop="127393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127971" g_stop="127693" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-E266076" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127971" e_stop="127693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTAC-A-TAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</genome_strand>
        <mrna_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTACCATTAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>46</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2710" PGL_stop="1869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2710" e_stop="2083"/>
            <exon e_start="1925" e_stop="1869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.916"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="2710" e_stop="2083" e_length="628"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2082" i_stop="1926" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="1925" e_stop="1869" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2710" stop="2083"/>
              <exon start="1925" stop="1869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCCGAACTTCAAGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAACTCACCCTGAAATCTGATGCGATGAAGACTAGCTAGAGTTGCGGTTGAGTTGAAGATGACGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAGGGGTCAGTACAAAACACAAGTACTGAGTAGGTATCATCGGCCAACTAAAAATAGAAAGCAATATATATCAGATAATAAGGTAAAATCAACCATAACACTTAACAGGTAACAACAACAAGTACCATAACCATTGGCCACAACCCAAGCACATCTATGAGGTCTCAAGCCTCCACACCATACCCATTTGGGAATCAGGTTCATTAAATTGAGTATATTAATATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTCGGAACGTGACACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTATGTGCGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGACACCCGATTCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTA : ACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAA</gDNA_template>
            <first_frame> M  S  E  L  Q  D  I  K  T  *  M  R  E  N  P  V  R  A  R  N  N  N  S  P  *  N  L  M  R  *  R  L  A  R  V  A  V  E  L  K  M  T  V  R  L  L  H  S  T  N  N  K  E  K  T  Y  K  *  G  S  V  Q  N  T  S  T  E  *  V  S  S  A  N  *  K  *  K  A  I  Y  I  R  *  *  G  K  I  N  H  N  T  *  Q  V  T  T  T  S  T  I  T  I  G  H  N  P  S  T  S  M  R  S  Q  A  S  T  P  Y  P  F  G  N  Q  V  H  *  I  E  Y  I  N  I  I  Q  D  S  F  S  L  F  L  L  C  R  N  V  T  L  R  S  P  N  A  T  C  R  F  V  T  P  D  P  L  I  L  C  A  V  R  D  T  R  S  P  N  T  M  C  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T   : N  L  I  L  L  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  </first_frame>
            <second_frame>  C  P  N  F  K  T  S  R  H  E  *  E  R  I  Q  S  E  L  G  T  I  T  H  P  E  I  *  C  D  E  D  *  L  E  L  R  L  S  *  R  *  R  Y  V  C  C  T  P  Q  I  T  K  R  K  H  T  S  R  G  Q  Y  K  T  Q  V  L  S  R  Y  H  R  P  T  K  N  R  K  Q  Y  I  S  D  N  K  V  K  S  T  I  T  L  N  R  *  Q  Q  Q  V  P  *  P  L  A  T  T  Q  A  H  L  *  G  L  K  P  P  H  H  T  H  L  G  I  R  F  I  K  L  S  I  L  I  *  F  K  I  H  S  L  Y  S  S  C  V  G  T  *  H  S  D  P  L  M  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  S  V  R  D  T  R  F  P  N  T  M  C  R  F  V  T  P  D  P  L  :  T  S  F  F  *  F  I  K  P  S  F  I  P  R  H  H  H  *  Q </second_frame>
            <third_frame>   V  R  T  S  R  H  Q  D  M  N  E  R  E  S  S  P  S  *  E  Q  *  L  T  L  K  S  D  A  M  K  T  S  *  S  C  G  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  E  N  I  Q  V  G  V  S  T  K  H  K  Y  *  V  G  I  I  G  Q  L  K  I  E  S  N  I  Y  Q  I  I  R  *  N  Q  P  *  H  L  T  G  N  N  N  K  Y  H  N  H  W  P  Q  P  K  H  I  Y  E  V  S  S  L  H  T  I  P  I  W  E  S  G  S  L  N  *  V  Y  *  Y  N  S  R  F  I  L  F  I  P  L  V  S  E  R  D  T  P  I  P  *  C  Y  V  S  V  R  D  T  R  S  P  N  T  M  C  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  M  C  R  F  V  T  P  D  S  L  I  L  C  V  G  S  *  H  P  I  H  * :   P  H  S  F  S  S  S  S  L  L  L  Y  Q  G  I  I  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2332" stop="2132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEYINIIQDSFSLFLLCRNVTLRSPNATCRFVTPDPLILCAVRDTRSPNTMCRFVTPDPLILCVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15398" PGL_stop="14976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15398" e_stop="14976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="15398" e_stop="14976" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15398" stop="14976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCAAAAAACAAGTGCCAAACAATGAGAAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGACACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGACAATATGCTGTACAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAGTCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTGACTGCGAAAACTGCTCTCTTTCTCTCTTTTTGGCTGCTGAAAAACTCTCTGTGTATATG</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  K  K  Q  V  P  N  N  E  K  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  Y  K  N  Q  L  N  R  T  R  N  E  A  G  V  A  I  *  S  W  L  L  G  L  N  F  D  C  E  N  C  S  L  S  L  F  L  A  A  E  K  L  S  V  Y  M </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  K  N  K  C  Q  T  M  R  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  D  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  T  I  C  C  T  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  L  T  A  K  T  A  L  F  L  S  F  W  L  L  K  N  S  L  C  I   </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  Q  K  T  S  A  K  Q  *  E  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  T  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  Q  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  S  R  N  L  K  L  A  V  R  A  E  F  *  L  R  K  L  L  S  F  S  L  F  G  C  *  K  T  L  C  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18902" PGL_stop="21676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20256" e_stop="20502"/>
            <exon e_start="21245" e_stop="21676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20256" e_stop="20502" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21245" e_stop="21676" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20256" stop="20502"/>
              <exon start="21245" stop="21676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20256" stop="20502"/>
              <exon start="21245" stop="21674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20275" stop="20502"/>
              <exon start="21245" stop="21676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG : TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAATAAAAAAAAAA</gDNA_template>
            <first_frame> L  F  S  V  A  N  E  *  F  S  *  T  L  *  L  *  Y  K  A  I  *  T  *  S  L  *  K  T  A  C  L  F  S  T  *  C  V  Y  W  N  *  W  T  D  Q  D  Y  L  Q  E  K  D  P  *  E  L  Y  Y  H  N  G  V  T  *  K  T  R  R  N  Q  S  C  F  T  K  V  R  N  R  Q  K  S   : V  A  I  T  K  K  T  M  L  *  C  V  T  I  Y  I  K  K  C  Y  G  C  R  D  K  R  M  Q  R  R  R  T  D  I  H  T  S  L  V  V  V  T  F  N  K  L  I  F  D  G  K  L  V  M  G  Y  E  G  F  I  R  T  E  D  F  R  G  Y  P  Q  L  S  Q  Y  Y  F  A  F  S  K  H  N  I  Y  S  P  L  L  V  K  L  I  *  E  S  S  L  G  N  L  S  M  N  L  V  G  L  E  C  T  *  G  K  W  N  Y  N  Y  I  V  C  N  Y  K  A  M  H  I  C  I  S  N  Q  M  *  R  N  L  G  V  N  K  K  K  </first_frame>
            <second_frame>  Y  F  P  W  Q  T  S  D  L  A  R  H  Y  D  F  D  T  R  P  Y  E  P  D  P  C  K  R  Q  L  V  Y  F  L  H  N  V  S  T  G  I  N  G  Q  I  K  T  I  Y  R  K  K  T  P  E  N  C  T  I  T  M  V  S  P  R  R  L  E  E  I  R  V  V  S  Q  K  L  E  I  D  R  N  R  :  L  L  S  P  R  R  Q  C  C  D  V  L  P  S  T  S  R  N  V  M  D  V  A  I  R  E  C  K  E  D  E  L  I  F  I  H  P  *  L  W  *  H  S  T  S  *  Y  L  M  A  N  W  *  W  D  M  K  D  L  *  E  Q  R  I  F  A  V  I  P  N  *  A  N  T  I  L  L  S  L  S  I  T  S  T  L  L  C  L  *  S  *  F  R  K  A  V  *  E  I  *  V  *  T  *  *  D  *  S  V  L  K  E  N  G  I  I  I  I  *  Y  V  T  T  K  L  C  T  S  A  *  A  I  K  C  E  E  T  W  E  L  I  K  K  K </second_frame>
            <third_frame>   I  F  R  G  K  R  V  I  *  L  D  I  M  T  L  I  Q  G  H  M  N  L  I  L  V  K  D  S  L  F  I  F  Y  I  M  C  L  L  E  L  M  D  R  S  R  L  F  T  G  K  R  P  L  R  I  V  L  S  Q  W  C  H  L  E  D  *  K  K  S  E  L  F  H  K  S  *  K  S  T  E  I  G :   C  Y  H  Q  E  D  N  V  V  M  C  Y  H  L  H  Q  E  M  L  W  M  S  R  *  E  N  A  K  K  T  N  *  Y  S  Y  I  L  S  C  G  D  I  Q  Q  V  D  I  *  W  Q  I  G  D  G  I  *  R  I  Y  K  N  R  G  F  S  R  L  S  P  I  K  P  I  L  F  C  F  L  *  A  *  H  L  L  S  F  A  C  E  V  D  L  G  K  Q  F  R  K  F  K  Y  E  L  S  R  I  R  V  Y  L  R  K  M  E  L  *  L  Y  S  M  *  L  Q  S  Y  A  H  L  H  K  Q  S  N  V  K  K  L  G  S  *  *  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20257" stop="20502"/>
                    <exon start="21245" stop="21358"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFPWQTSDLARHYDFDTRPYEPDPCKRQLVYFLHNVSTGINGQIKTIYRKKTPENCTITMVSPRRLEEIRVVSQKLEIDRNRLLSPRRQCCDVLPSTSRNVMDVAIRECKEDELIFIHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18902" e_stop="19250"/>
            <exon e_start="20392" e_stop="20502"/>
            <exon e_start="21245" e_stop="21411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18902" e_stop="19250" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19251" i_stop="20391" i_length="1141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20392" e_stop="20502" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="21245" e_stop="21411" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18902" stop="19250"/>
              <exon start="20392" stop="20502"/>
              <exon start="21245" stop="21411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAG : ACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG : TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATAT</gDNA_template>
            <first_frame> G  N  G  C  I  E  S  F  *  C  *  V  V  C  F  W  R  *  *  Y  G  F  F  H  G  E  F  V  E  D  A  I  E  I  *  S  R  I  M  V  L  Y  R  I  E  F  G  T  F  F  D  E  *  S  F  F  V  *  N  G  V  W  W  C  W  N  C  Y  K  F  S  V  S  *  S  S  W  K  S  V  *  C  M  Y  R  K  V  P  S  P  F  W  *  *  C  *  D  L  F  M  F  G  *  T  W  C  W  V  N  P  *  T  R  F  S  S   : D  Y  L  Q  E  K  D  P  *  E  L  Y  Y  H  N  G  V  T  *  K  T  R  R  N  Q  S  C  F  T  K  V  R  N  R  Q  K  S   : V  A  I  T  K  K  T  M  L  *  C  V  T  I  Y  I  K  K  C  Y  G  C  R  D  K  R  M  Q  R  R  R  T  D  I  H  T  S  L  V  V  V  T  F  N  K  L  I  F  D  G  K  L  V  M  G  Y </first_frame>
            <second_frame>  E  T  V  A  L  N  H  S  N  V  R  W  Y  V  F  G  D  D  D  T  V  F  F  T  E  N  L  L  K  T  L  S  K  Y  D  H  G  L  W  Y  Y  I  G  S  N  S  E  H  F  L  M  N  K  A  F  S  Y  E  M  A  F  G  G  A  G  I  A  I  S  S  P  L  A  K  V  L  G  K  V  F  D  A  C  I  E  R  Y  P  H  L  F  G  S  D  A  R  I  Y  S  C  L  A  E  L  G  V  G  L  T  H  E  P  G  F  H  Q  :  T  I  Y  R  K  K  T  P  E  N  C  T  I  T  M  V  S  P  R  R  L  E  E  I  R  V  V  S  Q  K  L  E  I  D  R  N  R  :  L  L  S  P  R  R  Q  C  C  D  V  L  P  S  T  S  R  N  V  M  D  V  A  I  R  E  C  K  E  D  E  L  I  F  I  H  P  *  L  W  *  H  S  T  S  *  Y  L  M  A  N  W  *  W  D   </second_frame>
            <third_frame>   K  R  L  H  *  I  I  L  M  L  G  G  M  F  L  E  M  M  I  R  F  F  S  R  R  I  C  *  R  R  Y  R  N  M  I  T  D  Y  G  I  I  S  D  R  I  R  N  I  F  *  *  I  K  L  F  R  M  K  W  R  L  V  V  L  E  L  L  *  V  L  R  *  L  K  F  L  E  K  C  L  M  H  V  S  K  G  T  L  T  F  L  V  V  M  L  G  F  I  H  V  W  L  N  L  V  L  G  *  P  M  N  P  V  F  I  R :   L  F  T  G  K  R  P  L  R  I  V  L  S  Q  W  C  H  L  E  D  *  K  K  S  E  L  F  H  K  S  *  K  S  T  E  I  G :   C  Y  H  Q  E  D  N  V  V  M  C  Y  H  L  H  Q  E  M  L  W  M  S  R  *  E  N  A  K  K  T  N  *  Y  S  Y  I  L  S  C  G  D  I  Q  Q  V  D  I  *  W  Q  I  G  D  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18903" stop="19250"/>
                    <exon start="20392" stop="20502"/>
                    <exon start="21245" stop="21358"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVALNHSNVRWYVFGDDDTVFFTENLLKTLSKYDHGLWYYIGSNSEHFLMNKAFSYEMAFGGAGIAISSPLAKVLGKVFDACIERYPHLFGSDARIYSCLAELGVGLTHEPGFHQTIYRKKTPENCTITMVSPRRLEEIRVVSQKLEIDRNRLLSPRRQCCDVLPSTSRNVMDVAIRECKEDELIFIHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40357" PGL_stop="39893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40357" e_stop="39893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="40357" e_stop="39893" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40357" stop="39893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTATATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGACGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAC</gDNA_template>
            <first_frame> I  N  T  I  I  S  F  I  E  F  M  G  S  R  T  I  *  I  N  I  Y  R  T  G  T  G  K  T  S  F  I  H  M  R  K  F  I  Y  I  Y  S  N  K  R  N  F  R  F  R  R  T  S  T  F  V  S  F  F  N  *  F  F  Y  *  F  Y  *  T  F  F  T  S  T  F  F  R  R  L  H  D  I  K  L  *  I  I  K  Y  E  T  *  Q  E  Q  L  T  S  *  I  I  N  T  K  N  K  Y  K  I  R  E  W  N  E  V  T  K  R  L  Y  K  N  K  R  L  *  *  K  L  K  Y  *  C  R  N  L  K  F  E  D  D  S  S  S  E  I  H  Q  M  T  K  *  Y  K  L  Y </first_frame>
            <second_frame>  L  I  P  *  Y  L  S  *  S  S  W  G  V  G  L  S  E  L  I  F  I  G  P  G  R  E  K  L  V  S  F  T  C  V  N  S  S  I  F  I  L  T  R  G  I  L  D  L  D  E  L  A  P  L  L  V  F  L  T  N  F  F  T  D  S  T  R  P  F  L  L  P  L  F  L  E  D  S  M  I  *  N  Y  K  L  *  N  T  K  L  N  K  N  N  L  Q  V  K  *  *  I  Q  K  I  N  I  R  L  E  S  G  T  K  L  P  N  V  C  I  R  T  N  D  Y  N  E  N  *  N  I  D  V  E  T  *  N  L  K  T  I  P  P  P  K  Y  T  K  *  P  N  D  I  S  Y   </second_frame>
            <third_frame>   *  Y  H  N  I  F  H  R  V  H  G  E  S  D  Y  L  N  *  Y  L  *  D  R  D  G  K  N  *  F  H  S  H  A  *  I  H  L  Y  L  F  *  Q  E  E  F  *  I  *  T  N  *  H  L  C  *  F  F  *  L  I  F  L  L  I  L  L  D  L  F  Y  F  H  F  F  *  K  T  P  *  Y  K  I  I  N  Y  K  I  R  N  L  T  R  T  T  Y  K  L  N  N  K  Y  K  K  *  I  *  D  *  R  V  E  R  S  Y  Q  T  F  V  *  E  Q  T  I  I  M  K  I  K  I  L  M  S  K  L  E  I  *  R  R  F  L  L  R  N  T  P  N  D  Q  M  I  *  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40332" stop="40114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSWGVGLSELIFIGPGREKLVSFTCVNSSIFILTRGILDLDELAPLLVFLTNFFTDSTRPFLLPLFLEDSMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40624" PGL_stop="42071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40624" e_stop="42071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="40624" e_stop="42071" e_length="1448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40624" stop="40852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40918" stop="41080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41098" stop="41681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41168" stop="41900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41460" stop="42071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGTGGTTTGCATATATGTCTTCTCTTGAAGTTGGTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAATAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGAAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAATGCATTTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTACTAAAATTTTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTTAACTGCACTTCTTTTCAACCCCGAATATAAAGAATATGGTACAAAAGCTTTAGTTGAATGCATTTATCAGAATTTAGATATTCAACCTGAAGAAGAACCTGATTTGGTAACATATCAAAATAGTATAAAATACTTTGCAAAAGAAATGTATGATAAATATTCATTCTTAGATAATGTTGAAAATCCTCAAA</gDNA_template>
            <first_frame> T  F  *  I  Y  I  W  W  D  G  R  F  N  G  G  I  K  K  T  F  D  *  Q  A  *  *  R  V  V  C  I  Y  V  F  S  *  S  W  W  K  L  *  C  *  R  I  G  *  R  I  K  Y  G  S  K  *  V  K  Y  F  E  P  K  W  S  S  Y  T  S  N  L  *  Q  G  S  *  S  *  K  L  C  *  N  G  C  C  L  W  F  T  F  *  F  W  R  T  S  G  F  Y  C  L  Y  S  *  N  I  *  S  *  F  S  R  F  I  N  K  H  G  K  K  R  Y  F  R  I  S  R  K  T  L  S  I  F  T  C  L  F  *  T  N  G  L  *  S  C  Y  Y  Y  *  Y  G  S  *  S  *  W  F  *  L  F  N  C  Y  C  A  L  D  R  L  *  L  E  F  T  K  K  N  Y  W  L  *  N  L  S  K  E  K  N  R  N  L  Y  C  Y  Y  C  V  G  N  F  R  F  F  W  S  L  *  *  S  R  *  Y  Y  F  R  *  C  L  C  *  F  K  C  Y  *  F  A  R  T  *  T  L  S  Y  *  *  I  C  F  S  C  *  M  C  R  A  Y  I  K  F  G  C  *  *  R  C  E  I  I  *  K  *  L  *  *  N  *  *  C  L  F  L  H  F  S  Y  E  *  *  *  *  N  *  S  I  *  R  T  L  *  C  I  *  T  S  V  *  K  S  S  E  A  C  K  N  *  M  E  F  L  L  *  Y  A  *  S  C  L  C  I  *  A  T  Y  Y  Y  A  I  *  *  S  *  C  L  S  *  I  *  N  *  *  *  *  L  G  *  S  K  *  T  *  N  I  F  E  I  I  L  *  C  Y  *  N  F  F  W  N  I  L  S  Y  Y  F  *  N  F  N  T  H  M  *  D  F  I  Y  F  F  *  I  *  N  K  Y  F  I  H  L  C  Y  *  S  Y  D  Y  K  I  *  K  I  F  F  S  Y  S  S  N  L  F  N  C  T  S  F  Q  P  R  I  *  R  I  W  Y  K  S  F  S  *  M  H  L  S  E  F  R  Y  S  T  *  R  R  T  *  F  G  N  I  S  K  *  Y  K  I  L  C  K  R  N  V  *  *  I  F  I  L  R  *  C  *  K  S  S   </first_frame>
            <second_frame>  H  F  K  Y  T  S  G  G  T  G  G  S  T  G  G  L  K  K  H  L  I  N  K  H  S  K  E  W  F  A  Y  M  S  S  L  E  V  G  G  N  C  N  V  E  E  S  V  R  G  S  N  M  V  Q  S  E  L  N  T  S  N  P  S  G  P  L  T  H  R  T  Y  N  K  D  R  D  R  E  N  F  A  K  M  V  V  V  C  G  L  P  F  S  F  G  E  H  P  G  F  I  A  Y  I  R  E  T  Y  N  P  S  F  Q  G  L  S  I  S  M  V  K  R  D  I  F  E  F  Q  E  K  H  C  Q  Y  L  R  A  Y  F  E  L  M  D  C  R  V  A  I  T  T  D  M  G  R  S  P  N  G  F  D  Y  L  T  V  T  A  H  W  I  D  Y  N  W  N  L  Q  K  R  I  I  G  Y  K  I  C  Q  K  K  K  T  E  I  Y  I  A  T  T  V  L  E  I  L  D  F  F  G  L  C  D  K  V  V  S  I  T  L  D  N  A  S  A  N  L  N  A  I  N  L  L  E  P  R  L  C  P  I  S  K  Y  A  F  H  V  R  C  A  A  H  I  L  N  L  V  V  S  D  G  V  K  L  F  E  N  S  C  D  K  I  D  N  A  C  F  Y  I  F  H  M  N  S  S  S  R  I  N  Q  F  K  E  L  C  N  A  F  K  L  P  F  R  K  V  P  K  H  V  K  T  R  W  N  S  F  Y  D  M  L  E  V  A  Y  A  Y  R  Q  P  I  T  T  L  F  N  N  H  N  A  Y  P  E  F  K  I  N  D  S  D  W  D  E  V  N  E  L  R  I  F  L  K  S  F  Y  D  A  T  K  I  F  S  G  I  Y  Y  P  T  I  S  E  I  L  I  H  I  C  E  I  S  S  I  F  S  E  Y  K  T  N  T  L  F  T  S  A  I  E  V  M  I  T  K  F  K  K  Y  F  F  P  I  P  Q  I  Y  L  T  A  L  L  F  N  P  E  Y  K  E  Y  G  T  K  A  L  V  E  C  I  Y  Q  N  L  D  I  Q  P  E  E  E  P  D  L  V  T  Y  Q  N  S  I  K  Y  F  A  K  E  M  Y  D  K  Y  S  F  L  D  N  V  E  N  P  Q  </second_frame>
            <third_frame>   I  L  N  I  H  L  V  G  R  E  V  Q  R  G  D  *  K  N  I  *  L  T  S  I  V  K  S  G  L  H  I  C  L  L  L  K  L  V  E  I  V  M  L  K  N  R  L  E  D  Q  I  W  F  K  V  S  *  I  L  R  T  Q  V  V  L  L  H  I  E  P  I  T  R  I  V  I  V  K  T  L  L  K  W  L  L  F  V  V  Y  L  L  V  L  E  N  I  R  V  L  L  L  I  F  V  K  H  I  I  L  V  F  K  V  Y  Q  *  A  W  *  K  E  I  F  S  N  F  K  K  N  I  V  N  I  Y  V  P  I  L  N  *  W  I  V  E  L  L  L  L  L  I  W  V  V  V  L  M  V  L  I  I  *  L  L  L  R  I  G  S  I  I  I  G  I  Y  K  K  E  L  L  V  I  K  F  V  K  R  K  K  P  K  F  I  L  L  L  L  C  W  K  F  *  I  F  L  V  F  V  I  K  S  L  V  L  L  *  I  M  P  L  L  I  *  M  L  L  I  C  *  N  L  D  F  V  L  L  V  N  M  L  F  M  L  D  V  P  R  I  Y  *  I  W  L  L  V  T  V  *  N  Y  L  K  I  V  V  I  K  L  I  M  L  V  F  T  F  F  I  *  I  V  V  V  E  L  I  N  L  K  N  F  V  M  H  L  N  F  R  L  E  K  F  R  S  M  *  K  L  D  G  I  P  F  M  I  C  L  K  L  L  M  H  I  G  N  L  L  L  R  Y  L  I  I  I  M  L  I  L  N  L  K  L  M  I  V  I  G  M  K  *  M  N  L  E  Y  F  *  N  H  F  M  M  L  L  K  F  F  L  E  Y  I  I  L  L  F  L  K  F  *  Y  T  Y  V  R  F  H  L  F  F  L  N  I  K  Q  I  L  Y  S  P  L  L  L  K  L  *  L  Q  N  L  K  N  I  F  F  L  F  L  K  F  I  *  L  H  F  F  S  T  P  N  I  K  N  M  V  Q  K  L  *  L  N  A  F  I  R  I  *  I  F  N  L  K  K  N  L  I  W  *  H  I  K  I  V  *  N  T  L  Q  K  K  C  M  I  N  I  H  S  *  I  M  L  K  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40625" stop="42070"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFKYTSGGTGGSTGGLKKHLINKHSKEWFAYMSSLEVGGNCNVEESVRGSNMVQSELNTSNPSGPLTHRTYNKDRDRENFAKMVVVCGLPFSFGEHPGFIAYIRETYNPSFQGLSISMVKRDIFEFQEKHCQYLRAYFELMDCRVAITTDMGRSPNGFDYLTVTAHWIDYNWNLQKRIIGYKICQKKKTEIYIATTVLEILDFFGLCDKVVSITLDNASANLNAINLLEPRLCPISKYAFHVRCAAHILNLVVSDGVKLFENSCDKIDNACFYIFHMNSSSRINQFKELCNAFKLPFRKVPKHVKTRWNSFYDMLEVAYAYRQPITTLFNNHNAYPEFKINDSDWDEVNELRIFLKSFYDATKIFSGIYYPTISEILIHICEISSIFSEYKTNTLFTSAIEVMITKFKKYFFPIPQIYLTALLFNPEYKEYGTKALVECIYQNLDIQPEEEPDLVTYQNSIKYFAKEMYDKYSFLDNVENPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42695" PGL_stop="42028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42695" e_stop="42028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="42695" e_stop="42028" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42695" stop="42277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42603" stop="42028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426698" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCAATTTACAACTATTGGTAGAGTACATAGCTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTATGTCTCGAGACTCGAATGTAATACTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTAGGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCACATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGCTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGATGCCTCCGAAGCTACTGATGATCCTTGAATTGCAAGCACATCCTTCACCATCCTACTAAGTTTTGGATATTGAGCTCCACGATTTCTCCACCAGTTCAATAGTTCCGGTATACCATTATCGTTTGTAATATCATATGTACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCGTCCATGAGCACCTACTTGATTTGTAGACGTTTGAGGATTTTCAACATTATCTAAGAATGAATATTTATCATAC</gDNA_template>
            <first_frame> N  F  N  L  Q  L  L  V  E  Y  I  A  Y  A  A  T  F  *  E  G  F  C  F  N  Y  V  S  R  L  E  C  N  T  N  S  C  I  V  P  *  I  L  F  L  T  Q  L  G  I  D  C  D  Q  L  L  V  L  V  K  L  V  D  D  L  E  F  R  C  H  H  H  Y  H  I  Q  *  L  N  L  *  K  V  Q  I  D  Y  L  T  L  E  V  L  D  F  Y  A  Q  H  L  S  S  L  *  I  T  L  I  S  P  G  C  L  L  L  T  N  I  C  G  L  Q  F  E  I  L  P  R  *  K  M  P  P  K  L  L  M  I  L  E  L  Q  A  H  P  S  P  S  Y  *  V  L  D  I  E  L  H  D  F  S  T  S  S  I  V  P  V  Y  H  Y  R  L  *  Y  H  M  Y  P  V  Q  D  I  *  Q  I  H  I  Y  *  K  S  Q  D  Q  V  Y  V  S  L  V  H  E  H  L  L  D  L  *  T  F  E  D  F  Q  H  Y  L  R  M  N  I  Y  H   </first_frame>
            <second_frame>  I  S  I  Y  N  Y  W  *  S  T  *  L  T  Q  P  P  S  R  K  G  S  V  S  T  M  S  R  D  S  N  V  I  L  I  V  V  *  S  R  K  S  S  F  *  L  S  *  G  L  I  V  I  N  F  W  S  W  *  S  S  L  T  I  L  N  F  D  A  I  I  T  T  T  S  N  S  *  I  Y  E  K  F  K  L  T  I  *  L  W  K  S  L  I  S  T  L  S  I  Y  P  V  S  K  *  H  *  Y  L  Q  A  V  F  C  *  R  I  S  V  V  S  N  L  K  S  C  R  A  E  R  C  L  R  S  Y  *  *  S  L  N  C  K  H  I  L  H  H  P  T  K  F  W  I  L  S  S  T  I  S  P  P  V  Q  *  F  R  Y  T  I  I  V  C  N  I  I  C  T  L  F  K  I  F  N  K  F  T  F  I  R  R  V  K  T  K  F  M  F  H  S  S  M  S  T  Y  L  I  C  R  R  L  R  I  F  N  I  I  *  E  *  I  F  I  I  </second_frame>
            <third_frame>   F  Q  F  T  T  I  G  R  V  H  S  L  R  S  H  L  L  G  R  V  L  F  Q  L  C  L  E  T  R  M  *  Y  *  *  L  Y  S  P  V  N  P  L  S  N  S  A  R  D  *  L  *  S  T  S  G  L  G  K  A  R  *  R  S  *  I  S  M  P  S  S  L  P  H  P  I  A  E  S  M  K  S  S  N  *  L  S  N  F  G  S  P  *  F  L  R  S  A  F  I  Q  S  L  N  N  T  D  I  S  R  L  S  S  A  N  E  Y  L  W  S  P  I  *  N  L  A  A  L  K  D  A  S  E  A  T  D  D  P  *  I  A  S  T  S  F  T  I  L  L  S  F  G  Y  *  A  P  R  F  L  H  Q  F  N  S  S  G  I  P  L  S  F  V  I  S  Y  V  P  C  S  R  Y  L  T  N  S  H  L  L  E  E  S  R  P  S  L  C  F  T  R  P  *  A  P  T  *  F  V  D  V  *  G  F  S  T  L  S  K  N  E  Y  L  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42113" PGL_stop="42694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42113" e_stop="42694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="42113" e_stop="42694" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42113" stop="42694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACATATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCATCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATGTGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGTCTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACCAATAGTTGTAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  T  Y  D  I  T  N  D  N  G  I  P  E  L  L  N  W  W  R  N  R  G  A  Q  Y  P  K  L  S  R  M  V  K  D  V  L  A  I  Q  G  S  S  V  A  S  E  A  S  F  S  A  A  R  F  Q  I  G  D  H  R  Y  S  L  A  E  D  S  L  E  I  S  V  L  F  R  D  W  I  N  A  E  R  R  N  Q  G  L  P  K  L  D  S  Q  F  E  L  F  I  D  S  A  I  G  C  G  S  D  D  G  I  E  I  Q  D  R  Q  R  A  L  P  R  P  E  V  D  H  N  Q  S  L  A  E  L  E  R  G  F  T  G  L  Y  N  Y  *  Y  Y  I  R  V  S  R  H  S  *  N  R  T  L  P  R  R  W  L  R  K  L  C  T  L  P  I  V  V  N  *  N </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  L  N  I  L  N  R  V  H  M  I  L  Q  T  I  M  V  Y  R  N  Y  *  T  G  G  E  I  V  E  L  N  I  Q  N  L  V  G  W  *  R  M  C  L  Q  F  K  D  H  Q  *  L  R  R  H  L  S  A  R  Q  D  F  K  L  E  T  T  D  I  R  *  Q  K  T  A  W  R  Y  Q  C  Y  L  E  T  G  *  M  L  S  V  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  S  *  I  Q  L  L  D  V  V  V  M  M  A  S  K  F  K  I  V  N  E  L  Y  Q  D  Q  K  L  I  T  I  N  P  *  L  S  *  K  E  D  L  R  D  Y  T  T  I  S  I  T  F  E  S  R  D  I  V  E  T  E  P  F  L  E  G  G  C  V  S  Y  V  L  Y  Q  *  L  *  I  E   </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  *  I  S  *  T  G  Y  I  *  Y  Y  K  R  *  W  Y  T  G  T  I  E  L  V  E  K  S  W  S  S  I  S  K  T  *  *  D  G  E  G  C  A  C  N  S  R  I  I  S  S  F  G  G  I  F  Q  R  G  K  I  S  N  W  R  P  Q  I  F  V  S  R  R  Q  P  G  D  I  S  V  I  *  R  L  D  K  C  *  A  *  K  S  R  T  S  K  V  R  *  S  I  *  T  F  H  R  F  S  Y  W  M  W  *  *  *  W  H  R  N  S  R  S  S  T  S  F  T  K  T  R  S  *  S  Q  S  I  P  S  *  V  R  K  R  I  Y  G  T  I  Q  L  L  V  L  H  S  S  L  E  T  *  L  K  Q  N  P  S  *  K  V  A  A  *  A  M  Y  S  T  N  S  C  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42113" stop="42598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGLDSSNKCEFVKYLEQGTYDITNDNGIPELLNWWRNRGAQYPKLSRMVKDVLAIQGSSVASEASFSAARFQIGDHRYSLAEDSLEISVLFRDWINAERRNQGLPKLDSQFELFIDSAIGCGSDDGIEIQDRQRALPRPEVDHNQSLAELERGFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="55736" PGL_stop="55518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55736" e_stop="55518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="55736" e_stop="55518" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55736" stop="55518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTCACACCATATTTCAGGGTGAGCTAAAGCTTCTAGCTTGGACTGGATCTTCCTCTCCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGATGTTTATGTATTTTAGCTTCTTAGATACTCTTAAATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  S  H  H  I  S  G  *  A  K  A  S  S  L  D  W  I  F  L  S  M  S  *  C  L  E  V  P  A  W  T  R  C  L  C  I  L  A  S  *  I  L  L  N  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  R  H  T  I  F  Q  G  E  L  K  L  L  A  W  T  G  S  S  S  P  C  L  D  A  L  K  F  R  H  G  L  D  V  Y  V  F  *  L  L  R  Y  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   V  T  P  Y  F  R  V  S  *  S  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  M  F  M  Y  F  S  F  L  D  T  L  K  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59449" PGL_stop="60199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59449" e_stop="60199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="59449" e_stop="60199" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59449" stop="60161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59449" stop="60044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59449" stop="59974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59520" stop="60199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59520" stop="59878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAACTCCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGTTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGTGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  M  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  Y  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  F  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  K  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  K  Q  V  I  Y  A  R  N  G  I  L  V  V  N  S  Y  L  V  Q  L  P  I  V  Y  A  H  P  K  T  P  I  L  F  L  H  K  *  Y  R  S  T  P  R  R  C  T  C  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  I  H  S  I  R  G  Y  R  N  G  V  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  W  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  Y  T  I  T  P  S  F  E  T  T  C  P  K  K  D  T  S  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  L  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  L  L  I  V  T  L  F  N  C  R  *  S  M  H  I  L  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  V  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  G  S  I  L  *  G  G  I  E  M  G  *  V </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  I  P  S  P  H  P  S  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  *  T  F  P  I  P  F  S  N  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  L  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  Q  T  S  H  L  C  E  E  W  D  T  C  C  *  *  L  P  C  S  T  A  D  S  L  C  T  S  *  N  S  H  P  F  S  S  Q  I  I  P  E  H  P  K  E  M  H  L  F  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R  D  P  F  Y  K  G  V  *  K  W  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59713" stop="59952"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGIRKTKRHYYKFVMPIPSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59645" stop="59842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60441" PGL_stop="60771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60441" e_stop="60771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="60441" e_stop="60771" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60441" stop="60771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGATAACGTCACAGTTTTAGCATTACAATCAAAAAATGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGAAAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAATCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  I  T  S  Q  F  *  H  Y  N  Q  K  M  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  *  K  S  Q  E  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  I  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  G  Q  I  I  Q  N  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  K  K  C  K  I  R  R  K  P  N  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  M  S  I  S  L  H  K  S  H  R  K  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  *  F  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  V  K  *  Y  K  I  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  D  N  V  T  V  L  A  L  Q  S  K  N  A  K  F  G  E  S  Q  I  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  S  I  K  V  T  G  K  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  N  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  K  S  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60572" stop="60769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLSIKVTGKDLYTFSTITDSPTGVETRIGMSSNSQFNLRPVANEEDTYENVDPGSNNTKSMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61369" PGL_stop="62083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61369" e_stop="62083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="61369" e_stop="62083" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61369" stop="62083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61372" stop="62035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAATTCGCTCTTGTGGACTGAAATAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATAAGCAGTAACCGACATCCTACCTTGCTCTAGGCACAAGAACTTATATCTTTTCCTATCTCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCGGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATCGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGGGCATCCATGCGGGGAGCCACAGTAGCCGTATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGAGGCAATTCCTCATTATGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCGCTATTATCAGAT</gDNA_template>
            <first_frame> T  N  S  L  L  W  T  E  I  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  S  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  S  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  G  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  W  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  R  Q  F  L  I  M  Y  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  C  A  I  I  R  </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  *  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  *  A  V  T  D  I  L  P  C  S  R  H  K  N  L  Y  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  A  S  M  R  G  A  T  V  A  V  C  C  T  S  G  T  *  G  A  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  L  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  L  S  D </second_frame>
            <third_frame>   E  F  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  K  Q  *  P  T  S  Y  L  A  L  G  T  R  T  Y  I  F  S  Y  L  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  R  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  I  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  S  A  L  *  S  D  E  E  T  C  L  F  P  M  G  H  P  C  G  E  P  Q  *  P  Y  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  E  A  I  P  H  Y  V  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  L  R  Y  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61681" stop="61935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVGILRFSTLEDWRFQFQELTEKFMLIICHYRPCSQTRKRAYFQWGIHAGSHSSRMLYLRNLRCWCRKHWRCLTLIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62091" PGL_stop="61539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62091" e_stop="61539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="62091" e_stop="61539" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62091" stop="61539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCATCTGATAATAGCGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACATAATGAGGAATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATACGGCTACTGTGGCTCCCCGCATGGATGCCCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  S  D  N  S  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  H  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  T  A  T  V  A  P  R  M  D  A  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  H  L  I  I  A  Q  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  I  M  R  N  C  L  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  I  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  R  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  P  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  A  I  *  *  *  R  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  *  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  Y  G  Y  C  G  S  P  H  G  C  P  I  G  N  R  H  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  M  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62085" stop="61540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDNSAVTPPPTEEVVREGEEGETEQVHNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQHTATVAPRMDAPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="62450" PGL_stop="62165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62450" e_stop="62165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="62450" e_stop="62165" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCAATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTCTTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAAATGGTTAGAACTAGAGCAACGACTGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  Q  F  F  L  S  F  F  R  A  I  T  W  V  Q  F  L  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  N  S  F  F  L  S  F  V  L  L  L  G  S  N  S  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  K  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  L  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  N  G  *  N  *  S  N  D  C  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62401" stop="62165"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFNSFFLSFVLLLGSNSYLGDTNWYLTIFTLFRKWLELEQRLRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="62826" PGL_stop="62608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62826" e_stop="62608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="62826" e_stop="62608" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62826" stop="62608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTCACACCACATTTCAGGGTGAGCTAAAGCTTCTAGCTTTGACTGGATCTTTCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTAGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  S  H  H  I  S  G  *  A  K  A  S  S  F  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  C  L  C  I  L  A  S  *  I  L  L  D  L  V  I  *  S  R  C  S  S  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  R  H  T  T  F  Q  G  E  L  K  L  L  A  L  T  G  S  F  S  S  C  L  D  A  L  K  F  R  H  G  L  A  V  Y  V  F  *  L  L  R  Y  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   V  T  P  H  F  R  V  S  *  S  F  *  L  *  L  D  L  S  L  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  F  S  N  L  K  *  M  F  *  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="66153" PGL_stop="66946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66153" e_stop="66946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="66153" e_stop="66946" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66153" stop="66893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66212" stop="66946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66212" stop="66906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATTTGATACTGGTGCCGCCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTCAAGCGCATTTTCCTCATCAAGACGAGTACAAAGGAAAGTTTGCGTCAAACTG</gDNA_template>
            <first_frame> R  F  D  T  G  A  A  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  G  R  F  *  W  T  Q  I  H  F  G  C  H  *  L  F  H  Q  V  G  G  S  S  L  L  Q  V  S  N  Q  K  S  G  G  R  F  C  P  Q  Q  S  D  M  Q  I  R  G  S  R  I  H  H  Y  R  *  R  C  K  S  Q  Q  P  F  D  E  R  D  M  *  T  I  *  D  Y  S  L  K  V  N  C  L  S  P  P  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  K  D  F  E  E  N  D  *  Q  T  A  R  L  T  *  N  F  A  I  C  S  T  V  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  G  I  W  N  R  G  S  R  A  C  *  S  R  D  T  I  L  K  D  H  P  R  S  G  V  K  Q  R  *  V  G  *  Q  M  D  *  S  T  S  F  D  *  *  E  E  N  G  R  R  L  P  W  P  V  V  *  T  K  N  D  S  C  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  Q  A  H  F  P  H  Q  D  E  Y  K  G  K  F  A  S  N   </first_frame>
            <second_frame>  D  L  I  L  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  E  M  D  V  I  G  P  I  E  P  A  A  F  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  F  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  *  R  S  T  A  Y  H  P  Q  M  N  G  A  V  E  D  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  *  H  E  I  L  P  Y  A  L  P  C  Y  Q  T  T  V  K  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  W  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  L  I  K  T  S  T  K  E  S  L  R  Q  T  </second_frame>
            <third_frame>   I  *  Y  W  C  R  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  K  W  M  S  S  V  L  *  S  R  P  L  L  M  D  T  D  S  F  W  L  P  L  I  I  S  P  S  G  W  K  Q  P  L  T  S  Q  *  P  K  K  W  W  P  I  L  S  A  T  I  *  Y  A  D  S  G  F  Q  N  S  S  L  P  I  T  V  Q  I  S  T  A  I  *  *  K  R  Y  V  N  N  L  R  L  F  I  E  G  Q  L  L  I  T  P  K  *  T  E  L  *  R  T  P  T  R  T  S  K  R  F  *  G  K  *  L  T  N  S  E  V  D  M  K  F  C  H  M  L  Y  R  V  I  K  R  R  S  K  H  R  L  G  L  L  H  T  C  W  Y  M  E  Q  R  Q  S  C  L  L  K  S  R  Y  H  P  *  G  S  S  K  K  R  S  *  A  T  L  S  G  L  A  N  G  L  I  N  *  L  *  L  M  R  R  E  W  S  P  F  A  M  A  S  C  I  D  K  E  *  L  V  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  S  S  A  F  S  S  S  R  R  V  Q  R  K  V  C  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66580" stop="66945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEILPYALPCYQTTVKTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKWIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFLIKTSTKESLRQT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66154" stop="66477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLILVPPHELNAMSSPWPFVAWEMDVIGPIEPAAFNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPEFIITDNGANLNSHLMKEICEQFKIIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90057" PGL_stop="88403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90057" e_stop="89839"/>
            <exon e_start="89141" e_stop="88569"/>
            <exon e_start="88463" e_stop="88443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="90057" e_stop="89839" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="89141" e_stop="88569" e_length="573"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88568" i_stop="88464" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="88463" e_stop="88443" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90057" stop="89839"/>
              <exon start="89141" stop="88590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90056" stop="89839"/>
              <exon start="89141" stop="88569"/>
              <exon start="88463" stop="88443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90055" stop="89839"/>
              <exon start="89141" stop="88610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90051" stop="89839"/>
              <exon start="89141" stop="88614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90037" stop="89839"/>
              <exon start="89141" stop="88611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90036" stop="89839"/>
              <exon start="89141" stop="88606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATG : ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTTAAATAATGTATTTTGAAGAAATCATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTATATTTTTTTTTCTTTTTTTTA : ATAGATAAATAAAAAATAAAA</gDNA_template>
            <first_frame> N  F  V  I  Y  H  I  I  E  E  K  *  A  S  M  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  H  T  I  S  P  P  C  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  L  L  S  F  G  T  S  S  M  :  M  E  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  T  S  *  L  K  K  R  *  L  K  E  I  Y  W  S  I  T  N  H  F  T  S  L  F  M  L  R  Q  R  G  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  W  N  *  S  S  M  *  P  K  I  L  R  I  T  T  S  S  N  T  *  I  L  Y  T  R  T  L  *  K  C  R  Q  V  Y  V  K  F  F  K  *  C  I  L  K  K  S  Y  E  Y  D  N  I  F  K  *  L  K  Q  C  I  P  N  A  W  I  *  A  V  V  S  K  S  C  N  N  M  C  C  Y  *  R  M  C  F  E  M  S  C  N  K  N  K  T  S  G  Y  L  I  F  I  D  K  *  K  I  K  V  V  I  *  I  A  L  Y  F  F  F  F  F  L  :  I  D  K  *  K  I  K </first_frame>
            <second_frame>  T  L  *  Y  I  I  S  *  K  K  N  E  P  P  W  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  T  P  Y  L  H  H  V  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  C  Y  L  L  E  L  H  P  * :   W  K  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  Q  A  N  *  K  K  D  N  *  R  R  Y  I  G  V  L  Q  I  I  L  H  H  C  S  C  *  D  K  G  G  K  *  F  S  Y  F  D  H  R  I  *  K  E  K  C  *  C  A  R  S  T  H  I  H  G  I  N  P  Q  C  N  Q  R  Y  *  E  L  P  H  Q  V  I  H  K  Y  Y  T  Q  G  L  F  E  N  V  D  K  Y  M  S  N  S  L  N  N  V  F  *  R  N  H  M  N  T  I  T  F  L  N  S  *  N  N  V  Y  Q  M  L  G  F  K  L  L  S  Q  S  L  V  I  I  C  V  V  I  S  G  C  A  L  K  C  L  V  T  K  I  K  R  A  D  I  *  F  L  *  I  N  K  K  *  R  L  L  F  E  L  H  Y  I  F  F  S  F  F  * :   *  I  N  K  K  *   </second_frame>
            <third_frame>   L  C  D  I  S  Y  H  R  R  K  M  S  L  H  G  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  H  H  I  S  T  M  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  N  K  L  I  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  V  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  N  V  P  D  P  H  T  F  M  E  L  I  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  H  K  D  S  L  K  M  S  T  S  I  C  Q  I  L  *  I  M  Y  F  E  E  I  I  *  I  R  *  H  F  *  I  V  K  T  M  Y  T  K  C  L  D  L  S  C  C  L  K  V  L  *  *  Y  V  L  L  L  A  D  V  L  *  N  V  L  *  Q  K  *  N  E  R  I  S  N  F  Y  R  *  I  K  N  K  G  C  Y  L  N  C  T  I  F  F  F  L  F  F   : N  R  *  I  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90055" stop="89839"/>
                    <exon start="89141" stop="88876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCDISYHRRKMSLHGKLVSEIEIKCDGDIFYEVYRHRPHHISTMSPNNIQNVDVHEGEWGTVDSVIFWNFIHDGKEVVAKEKVEEIDEENKLIKKKIIEGDILEYYKSFYITVHVETKGENNLVTLIIEYEKKNANVPDPHTFMELILNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90056" e_stop="89839"/>
            <exon e_start="89141" e_stop="88689"/>
            <exon e_start="88520" e_stop="88403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.495" e_score="0.945"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90056" e_stop="89839" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="89141" e_stop="88689" e_length="453"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.495">
            <gDNA_intron_boundary i_start="88688" i_stop="88521" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="88520" e_stop="88403" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90056" stop="89839"/>
              <exon start="89141" stop="88689"/>
              <exon start="88520" stop="88403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATG : ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTTAAATAATGTATTTTGAAGAAATCATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAG : CGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAATGAGCGGATATCAAATTTTTATAGATAAATAAAAAATAAAAGTTGATATTTGGATTGCACTATAGTTTTTCTTTCTTTTTT</gDNA_template>
            <first_frame> T  L  *  Y  I  I  S  *  K  K  N  E  P  P  W  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  T  P  Y  L  H  H  V  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  C  Y  L  L  E  L  H  P  * :   W  K  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  Q  A  N  *  K  K  D  N  *  R  R  Y  I  G  V  L  Q  I  I  L  H  H  C  S  C  *  D  K  G  G  K  *  F  S  Y  F  D  H  R  I  *  K  E  K  C  *  C  A  R  S  T  H  I  H  G  I  N  P  Q  C  N  Q  R  Y  *  E  L  P  H  Q  V  I  H  K  Y  Y  T  Q  G  L  F  E  N  V  D  K  Y  M  S  N  S  L  N  N  V  F  *  R  N  H  M  N  T  I  T  F  L  N  S  *  N  N  V  Y  Q  M  L  G  F  K  L  L  S  Q  S  L  V  I  I  C  V  V  I  S :   G  C  A  L  K  Y  L  V  T  K  I  K  *  A  D  I  K  F  L  *  I  N  K  K  *  K  L  I  F  G  L  H  Y  S  F  S  F  F  F </first_frame>
            <second_frame>  L  C  D  I  S  Y  H  R  R  K  M  S  L  H  G  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  H  H  I  S  T  M  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  N  K  L  I  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  V  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  N  V  P  D  P  H  T  F  M  E  L  I  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  H  K  D  S  L  K  M  S  T  S  I  C  Q  I  L  *  I  M  Y  F  E  E  I  I  *  I  R  *  H  F  *  I  V  K  T  M  Y  T  K  C  L  D  L  S  C  C  L  K  V  L  *  *  Y  V  L  L  L   : A  G  V  L  *  N  I  L  *  Q  K  *  N  E  R  I  S  N  F  Y  R  *  I  K  N  K  S  *  Y  L  D  C  T  I  V  F  L  S  F   </second_frame>
            <third_frame>   F  V  I  Y  H  I  I  E  E  K  *  A  S  M  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  H  T  I  S  P  P  C  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  L  L  S  F  G  T  S  S  M  :  M  E  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  T  S  *  L  K  K  R  *  L  K  E  I  Y  W  S  I  T  N  H  F  T  S  L  F  M  L  R  Q  R  G  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  W  N  *  S  S  M  *  P  K  I  L  R  I  T  T  S  S  N  T  *  I  L  Y  T  R  T  L  *  K  C  R  Q  V  Y  V  K  F  F  K  *  C  I  L  K  K  S  Y  E  Y  D  N  I  F  K  *  L  K  Q  C  I  P  N  A  W  I  *  A  V  V  S  K  S  C  N  N  M  C  C  Y  *  :  R  V  C  F  E  I  S  C  N  K  N  K  M  S  G  Y  Q  I  F  I  D  K  *  K  I  K  V  D  I  W  I  A  L  *  F  F  F  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90055" stop="89839"/>
                    <exon start="89141" stop="88876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCDISYHRRKMSLHGKLVSEIEIKCDGDIFYEVYRHRPHHISTMSPNNIQNVDVHEGEWGTVDSVIFWNFIHDGKEVVAKEKVEEIDEENKLIKKKIIEGDILEYYKSFYITVHVETKGENNLVTLIIEYEKKNANVPDPHTFMELILNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="95724" PGL_stop="96449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95724" e_stop="96449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="95724" e_stop="96449" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95724" stop="96209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96150" stop="96449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATGGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGTGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGGCTCGTTTAATTGCTAAAGGCTACAATCAGGAGTATGGGTTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCATGCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  M  V  N  Q  Q  P  T  M  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  V  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  G  T  R  L  V  *  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  M  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  W  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  C  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  *  Q  Y  F  Q  V  Q  G  S  F  N  C  *  R  L  Q  S  G  V  W  V  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  C  P  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  G  E  P  T  T  Y  Y  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  C  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  A  R  L  I  A  K  G  Y  N  Q  E  Y  G  F  D  Y  S  E  T  F  S  L  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  H  A  P  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95726" stop="96442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPESPPPVPPPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDGEPTTYYVASKNAYWRHAMDDEFKALTDQKTCVLVPKPHGRHPVGCKWVYKIKHNADDSISRYKARLIAKGYNQEYGFDYSETFSLVIRQETIRLVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKHAPVLGTHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="108991" PGL_stop="108058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108991" e_stop="108058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="108991" e_stop="108058" e_length="934"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108991" stop="108454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108544" stop="108058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAGGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCAAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGATTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGAT</gDNA_template>
            <first_frame> M  R  Q  L  A  R  V  Q  E  I  P  P  N  D  D  M  S  K  F  A  Y  D  T  P  P  G  F  A  F  N  S  E  E  I  M  K  I  W  Y  G  S  I  I  S  E  L  S  E  M  V  V  E  K  D  K  G  K  V  V  P  G  Y  L  S  W  F  R  D  P  M  T  F  G  D  T  P  E  G  S  S  R  K  R  R  D  Q  H  I  I  R  Q  L  K  K  E  L  E  K  A  K  A  T  I  A  R  Q  E  V  Q  V  Q  R  R  K  N  H  K  L  E  L  Q  D  V  E  G  E  L  K  H  A  E  G  R  L  A  R  L  E  E  E  L  D  N  R  I  H  L  A  R  Q  I  K  R  E  Q  N  F  E  I  S  R  L  K  R  G  F  E  A  S  E  E  A  Q  R  Q  L  I  I  E  R  A  T  L  R  H  Q  L  E  A  A  E  G  R  E  A  L  L  R  N  N  L  G  N  H  Q  A  L  L  N  D  C  H  Q  N  M  G  R  A  R  L  Q  V  H  Q  L  A  E  Q  T  S  Y  V  I  R  N  Q  R  R  M  N  D  Q  E  V  V  E  Q  E  R  T  I  V  P  H  L  P  K  V  F  L  N  L  Y  E  T  L  G  G  K  R  K  P  Q  E  S  D  E  D  *  R  K  V  L  V  V  F  V  V  R  F  I  L  F  V  E  R  L  S  F  *  F  K  I  W  C  L  G  I  L  C  *  </first_frame>
            <second_frame>  C  V  N  *  P  E  F  K  K  S  H  P  M  M  I  *  V  S  L  H  M  T  L  H  Q  V  L  L  L  T  A  K  R  L  *  R  F  G  T  G  V  L  F  L  S  *  V  K  W  L  W  R  K  I  K  E  R  W  F  L  G  T  Y  R  G  F  V  I  R  *  H  L  V  T  L  L  K  D  P  A  E  K  E  E  I  N  I  *  *  D  N  *  K  K  S  W  R  R  P  K  Q  P  L  H  G  K  K  Y  K  S  K  E  E  K  I  T  S  *  S  C  K  M  W  K  E  N  *  S  M  Q  R  E  D  *  P  D  W  R  R  N  W  I  I  E  S  T  W  H  D  R  *  K  G  S  R  I  L  R  S  L  D  *  R  G  A  S  R  H  P  K  R  R  K  D  N  *  S  S  K  E  Q  H  F  A  I  N  L  K  Q  Q  K  G  E  R  P  S  *  G  I  I  W  V  I  I  R  L  C  *  M  T  V  I  K  T  W  E  G  L  D  F  K  F  I  N  *  Q  S  K  P  P  M  L  L  E  I  S  A  V  *  M  I  K  K  W  L  S  K  N  G  P  L  F  P  I  C  R  R  C  F  *  I  C  M  R  P  W  E  E  K  E  S  P  K  K  V  M  K  I  E  E  K  F  *  L  F  L  L  F  V  S  F  C  L  L  K  D  L  V  S  S  L  K  F  G  V  *  G  Y  Y  V  D </second_frame>
            <third_frame>   A  S  T  S  Q  S  S  R  N  P  T  Q  *  *  Y  E  *  V  C  I  *  H  S  T  R  F  C  F  *  Q  R  R  D  Y  E  D  L  V  R  E  Y  Y  F  *  A  K  *  N  G  C  G  E  R  *  R  K  G  G  S  W  V  P  I  V  V  S  *  S  D  D  I  W  *  H  S  *  R  I  Q  Q  K  K  K  R  S  T  Y  N  K  T  I  E  K  R  V  G  E  G  Q  S  N  H  C  T  A  R  S  T  S  P  K  K  K  K  S  Q  V  R  V  A  R  C  G  R  R  I  E  A  C  R  G  K  T  S  P  I  G  G  G  I  G  *  *  N  P  L  G  T  T  D  K  K  G  A  E  F  *  D  L  S  I  E  E  G  L  R  G  I  R  R  G  A  K  T  I  D  H  R  K  S  N  T  S  P  S  T  *  S  S  R  R  A  R  G  P  L  E  E  *  S  G  *  S  S  G  F  V  K  *  L  S  S  K  H  G  K  G  *  T  S  S  S  S  T  S  R  A  N  L  L  C  Y  *  K  S  A  P  Y  E  *  S  R  S  G  *  A  R  T  D  H  C  S  P  F  A  E  G  V  S  E  F  V  *  D  L  G  R  K  K  K  A  P  R  K  *  *  R  L  K  K  S  F  S  C  F  C  C  S  F  H  F  V  C  *  K  T  *  F  L  V  *  N  L  V  F  R  D  I  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108991" stop="108155"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRQLARVQEIPPNDDMSKFAYDTPPGFAFNSEEIMKIWYGSIISELSEMVVEKDKGKVVPGYLSWFRDPMTFGDTPEGSSRKRRDQHIIRQLKKELEKAKATIARQEVQVQRRKNHKLELQDVEGELKHAEGRLARLEEELDNRIHLARQIKREQNFEISRLKRGFEASEEAQRQLIIERATLRHQLEAAEGREALLRNNLGNHQALLNDCHQNMGRARLQVHQLAEQTSYVIRNQRRMNDQEVVEQERTIVPHLPKVFLNLYETLGGKRKPQESDED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="127394" PGL_stop="128000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127394" e_stop="128000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="127394" e_stop="128000" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127394" stop="127906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127404" stop="127819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127405" stop="128000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAATCTAAGACT</gDNA_template>
            <first_frame> K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  F  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  I  P  *  N  S  K  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  I  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  E  N  A  L  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  C  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  Q  E  L  F  M  *  L  F  C  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  L  F  V  I  *  D  </first_frame>
            <second_frame>  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  L  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  F  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  E  I  P  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  S  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  K  M  P  *  V  P  K  K  P  *  A  R  G  L  L  K  M  Y  C  V  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  V  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  Y  L  *  S  K  T </second_frame>
            <third_frame>   K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  C  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  N  S  L  K  F  Q  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  E  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  T  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  F  I  C  N  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127404" stop="127793"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLEEFITWLYTMAYKYIPSFFLLLFVTLFLTSSYVIQVEARNFLEVTIPELPKPELPHLPEIPTLPKLEFPEIPKPELPTLPKPEFPEIPKPEFPSFSKVELPTLPKLEIPVIPKLELPTLSKPKMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="127971" PGL_stop="127693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127971" e_stop="127693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="127971" e_stop="127693" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127971" stop="127693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTACATAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</gDNA_template>
            <first_frame> N  V  T  S  K  T  S  T  L  V  N  *  K  Q  N  N  Y  I  N  N  S  C  T  *  I  S  H  K  *  S  F  Q  K  E  S  F  K  Y  I  Y  D  H  T  I  H  N  T  F  L  T  S  L  V  L  K  A  F  *  A  L  K  A  F  S  A  L  T  K  L  A  I  Q  A  *  E  *  Q  E  S  R  V  L  V  K  L  E  V  Q  P  L  K  M  M </first_frame>
            <second_frame>  M  S  L  V  R  Q  V  H  *  *  T  E  N  R  T  I  T  *  T  I  L  V  H  K  Y  H  I  N  N  L  S  K  R  K  A  S  N  T  Y  M  I  T  Q  Y  T  I  H  F  *  Q  A  S  C  S  R  L  F  R  H  L  R  H  F  R  L  *  Q  S  W  Q  F  K  L  R  N  D  R  N  L  E  F  W  *  S  W  K  F  N  L  *  K  *   </second_frame>
            <third_frame>   C  H  *  *  D  K  Y  I  S  E  L  K  T  E  Q  L  H  K  Q  F  L  Y  I  N  I  T  *  I  I  F  P  K  G  K  L  Q  I  H  I  *  S  H  N  T  Q  Y  I  F  N  K  P  R  A  Q  G  F  L  G  T  *  G  I  F  G  F  D  K  V  G  N  S  S  L  G  M  T  G  I  S  S  F  G  K  V  G  S  S  T  F  E  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 382 chains have been computed
$ 
$ memory statistics:
$ 356560 bytes spliced alignments in total
$ 46 spliced alignments have been stored
$ 7751 bytes was the average size of a spliced alignment
$ 28304 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1415 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 485 backtrace matrices have been allocated
$ 
$ date finished: 2010-01-30 19:23:47
-->
