<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-02-02 04:37:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603163" ref_strand="+" ref_description="SGN-U603163 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350862|emb|CAO40977.1| (e_value=3e-53) unnamed; (*ATH) AT1G27210.1 (e_value=8e-52) | Symbol: None | expressed protein | chr1:9455455-9458013 REVERSE | Aliases: T7N9.27, T7N9_27; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=2e-20) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1; ">
      <seq>ttcccttttttccctctaatttttccaccgccactgtaaccgtcgccggcggtaacatcaaccttactccggcgatctacagtactgttcccggcctcactattatctcctgccgacgggatatcttccattttgccatcaatggcgctacagagacaacctagtgatctgaaaaacagagtgaatacttgtctcaatagattgtccgaccgtgatactctcgccgttgctacgaatgagctggagtctatagttagaagtcttaacagtgaaggttttagtgcatttttgacttgtatttcgagtacggactcttccgataaatcgccggtgcgtcggcaatgtgttcggcttatcggagttctctcagcaactcacggagatgctttatcaccgcatctagcgaaaatgctttctactgttctccggggacttcgtgaccctgactcagctgttcgttctgcttgtgtagaagctgtttcgtccattgcgtcagaaattactcaaccgccgttttcgtctattttgaagccgttaatcgacgctattatgcacgagcaggataataattcgcagatcggagcttcgctttgccttgctgcggcaattgaagcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13649" stop="14866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13949" g_stop="14566" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U603163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13949" e_stop="14566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTTTTTCCCTCTAATTTTTCCACCGCCACTGTAACCGTCGCCGGCGGTAACATCAACCTTACTCCGGCGATCTACAGTACTGTTCCCGGCCTCACTATTATCTCCTGCCGACGGGATATCTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTGTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAGTTAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCGCCGGTGCGTCGGCAATGTGTTCGGCTTATCGGAGTTCTCTCAGCAACTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACTGTTCTCCGGAGACTTCGTGACCCTGACTCAGCTGTTCGTTCTGCTTGTGTAGAAGCTGTTTCGTCCATTGCGTCAGAAATTACTCAACCGCCGTTTTCGTCTATTTTGAAGCCGTTAATCGACGCTATTATGCACGAGCAGGATAATAATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCA</genome_strand>
        <mrna_strand>TTCCCTTTTTTCCCTCTAATTTTTCCACCGCCACTGTAACCGTCGCCGGCGGTAACATCAACCTTACTCCGGCGATCTACAGTACTGTTCCCGGCCTCACTATTATCTCCTGCCGACGGGATATCTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTGTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAGTTAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCGCCGGTGCGTCGGCAATGTGTTCGGCTTATCGGAGTTCTCTCAGCAACTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACTGTTCTCCGGGGACTTCGTGACCCTGACTCAGCTGTTCGTTCTGCTTGTGTAGAAGCTGTTTCGTCCATTGCGTCAGAAATTACTCAACCGCCGTTTTCGTCTATTTTGAAGCCGTTAATCGACGCTATTATGCACGAGCAGGATAATAATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563211" ref_strand="+" ref_description="SGN-U563211 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350863|emb|CAO40978.1| (e_value=9e-30) unnamed; (*ATH) AT1G27210.1 (e_value=7e-26) | Symbol: None | expressed protein | chr1:9455455-9458013 REVERSE | Aliases: T7N9.27, T7N9_27; ">
      <seq>caaaatcaaatgttacgagctcctgtaagctggattttagaaaatcccctgatgcaaaagcaaagcacactgtttcacaagcttcttcgttggaggtagcttgtgaagaacagaagagtcaaaattttagagttcaaggttcagtggattcagtgagttgtagcagttcaaactcagaagcaaagtcaactctattcaacagaccaccggatgagaagttccacagatatggtaattcacagtttggatctcgggttattccactctttgaggactacaatgacaacatggatgtacctgctgaggacatcaacgaagatgcattcttgagtcatagagagtacgagaatttctgttctgtcagcaaacagcttgttcagattgaaaatcaacagtccagtttgttagacctcctgcagggatttattggcagctcacgacatggaatgaattccttagagaaacgtgtaaatggtttggagagattacttgatgaaatgcaatatgatttggcaataacaacagggaggatttcagatactgattttacaggaagtacatgcagcatgatccctcgtgcagaatttttgggtcctaagttttggagaagtccagaaaggcaaaactcacaatcaagaatatccttctcaactggaagccaggatgtagcgtatagtccatcagaaactgatgctaccaagcagaacaagaatatatcttcagcaaagcagtttagtatcactccgggtgaagcattacgttctttctccagtcgaagaaaagagagaatagctcgagatggtgaaactgcagggttttgtcatgtcagtaggcttaatggaacgtcattcacaaattgcatacagcagcaaacttgagccttaggttgtgcggacaagaaaatactttagtctcagtgctgaaatatttgaatagtctttgtacttgaaaagaaacaaagctgtttgctgtgaagagaaatcagagaccaagataagttttcaatatctatacctggtcatgaggacaagaaatgagggtgtctgtacagaagttgtcaatgttaagtcctgtttatgcaaatgttattctgttttttgattttagtgatccaatgattgttctgtgaagatgaaatgatattcttccaaaggggagaaagtgcaaatattagtcaaattgaggagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15994" stop="18288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16294" g_stop="16712" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16880" g_stop="17345" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="885" r_length="466" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17346" i_stop="17683" i_length="338">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17684" g_stop="17988" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="1190" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U563211" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16294" e_stop="16712"/>
          <exon e_start="16880" e_stop="17345"/>
          <exon e_start="17684" e_stop="17988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAGGTACATTTCTCTTCTCCTTCCCTCAGCTCTGCTTCGAACATTATATTTAACTTTTGGTCTGCATTTAGTTGATGTCACAACCTGTAGTCTCCCCTATTTAAGAGGAATGATTTGTATATTTGTGCCAAGAGACATGCTGAGCTCAGCCTATTTCTTCTTCATTGCAGGGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAGGTGATTGTCCTCTTTAGCTTGAAATGATGATTGTTTGATTATTGAAGACATACTAGTCTGTTGGTCTCTAATCATCGCAATACTTAAAAGTCTTCTATAATATTATAAGTTTGAATAAATGGTTTGCGCTCTCATCAACTTTTGTAGATTCTTCTTTCACATCGTGTTCTGTATCTTTCAATTCTCATTAACAACATATTTTTGGACTTGATGAAACCTAATCCTCTTGTAGCTTATACAGTCTCTCAATCATATTATGTTCTTTTACAATTATACTCGCCGCTTGAAAGGTTTTTGTTTGTGTTAGTAACTAATGATGATTTCTTCTCTCTTAGCAGGTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTCTGATTCTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTT</genome_strand>
        <mrna_strand>CAAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAAGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG.......................................................................................................................................................................GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAAGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAG..................................................................................................................................................................................................................................................................................................................................................GTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTTTGATTTTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603957" ref_strand="+" ref_description="SGN-U603957 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggattcttcagagcaacgtcgtaagaggaaaaggattttgagaccatcttcaatatcagctcttgtttattttttctctgaaaggccttttgttttatgttttagttttttgatttttgtttttcttttatcttatcatatcccttttagttcctctgtttttcgacctgttttagttgtttcaagattgtcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24319" stop="25115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24619" g_stop="24815" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U603957" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24619" e_stop="24815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCTTCAGAGCAACGTCGTAAGAGGAAAAGGATTTTGAGACCATCTTCAATATCAGCTCTTGTTTATTTTTTCTCTGTAAGGTCTTTTGTTTTATGTTTTAGTTTTTTGATTTTTGTTTTTCTTTTATCTTATCATATCCCTTTTAGTTCCTCTGTTTTTCGACCTGTTTTAGTTGTTTCAAGATTGTCTTTA</genome_strand>
        <mrna_strand>TGGATTCTTCAGAGCAACGTCGTAAGAGGAAAAGGATTTTGAGACCATCTTCAATATCAGCTCTTGTTTATTTTTTCTCTGAAAGGCCTTTTGTTTTATGTTTTAGTTTTTTGATTTTTGTTTTTCTTTTATCTTATCATATCCCTTTTAGTTCCTCTGTTTTTCGACCTGTTTTAGTTGTTTCAAGATTGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602287" ref_strand="+" ref_description="SGN-U602287 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaacaaaaatgagttattcantaaaaatacggagtttgagtgtgtttatggtaaaaatagtactgntgatgatgttggtattgtaaagganaaatcgtattctgtanatgtttatggcgattttgaatttgggggcttttcgttanatgcccgttacctcgggttaattattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24644" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24944" g_stop="25115" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U602287" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24944" e_stop="25115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAATGAGTTATTCAGTAAAAATACGGAGTTTGAGTGTGTTTATGGTAGAAATAGTACTGGTGATGATGTTGGTATTGTAAAGGAGAAATCGTATTCTGTAGATGTTTATGGCGATTTTGAATTT-GGGGC-TTTCGTTAGATGCCCGTTACCTCGGGTTAATTATTCA</genome_strand>
        <mrna_strand>GAACAAAAATGAGTTATTCANTAAAAATACGGAGTTTGAGTGTGTTTATGGTAAAAATAGTACTGNTGATGATGTTGGTATTGTAAAGGANAAATCGTATTCTGTANATGTTTATGGCGATTTTGAATTTGGGGGCTTTTCGTTANATGCCCGTTACCTCGGGTTAATTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566384" ref_strand="+" ref_description="SGN-U566384 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|118486328|gb|ABK95005.1| (e_value=2e-125) unknown; (*ATH) AT1G27200.1 (e_value=4e-124) | Symbol: None | expressed protein, contains Pfam PF01697: Domain of unknown function | chr1:9449536-9451737 REVERSE | Aliases: T7N9.26, T7N9_26; ">
      <seq>gcaatagggatgttgaaaacgggaagtatgatctttgtgtgtgtactatggtgtggaatcaaggttcagcgcttcgtgaatggattacatatcattcttggcttggagttgagaggtggtttatctacgacaataatagcgatgacaatatcaaggatgtgattgaagagcttgagattgagaattacaatgttacacgacatgtttggccgtggatcaagactcaagaagcaggcttttcgcattgtgctcttagagcgaagaaagaatgtaattgggtatcgttcatggatgtggatgagtatttctactttccgtattctactccagggcatcaatgtttgagaagctcaggttacgcgggacaggattcccttcgatccctcgtggcaaatgtatcatcatcttcaccaggaattgcggagattagaacaacttgccatagttttggaccgtctggtctgaattcagctccttctcagggtatcactgttggatatacttgtcgtcttaagagtcccgagagacacaaatcaatcatacgtcccgatgctttggacaccactctcctcaatgtggtgcatcatttccacttgaggaaaggatttagctacatgaatttgccacaaagtactgcagtgataaaccactacaaataccaagtgtgggaggtattcagggcgaaatttttcagacgagtagctacatatgtcgtcgattggcagaacaatcaaaatgaaggatcaagggatagagcacctggtttagggacagaggccattgagccaccaaattggccattacaattctgtgaagtttgggataccggccttcgagactttgttttgtcaaactttgctgatttatcaactggtttgttgccttgggagaagtcttctttctaatcactgaatcccgataactatcgtagagaaaggaagtctagaagccagggctttgttcacctttggacacgagcactattccattctcgggagaaatccgtcttggagattgaacaacaataagatgagtcaacgttcaatctaagctagggagcttgaacaaaggctcaaagccaatcccacggaataataaagcttcacagggtctttctgtccaggggcaagtagtcccgcgtttccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25216" stop="26963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25516" g_stop="26663" g_length="1148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1148" r_length="1148" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U566384" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1148</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25516" e_stop="26663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCACGGAATAGTAAAGCTTCACAGGGTCTTTCTGTCCAGGTGCAGGTAGT-CCGCGTTTGCAGAA</genome_strand>
        <mrna_strand>GCAATAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAATCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCACGGAATAATAAAGCTTCACAGGGTCTTTCTGTCCAGGGGCAAGTAGTCCCGCGTTT-CCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586494" ref_strand="+" ref_description="SGN-U586494 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15223445|ref|NP_174039.1| (e_value=2e-28) leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]; (*ATH) AT1G27190.1 (e_value=2e-30) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to CLV1 receptor kinase GB:AAB58929 GI:2160756 from (Arabidopsis thaliana) | chr1:9446644-9448715 REVERSE | Aliases: T7N9.25, T7N9_25; (*SWP) sp|O04567|Y1719_ARATH (e_value=1e-29) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190; ">
      <seq>gaggcacagccttcttcattcttgtttttgccccgttcttcttcctaatctctcctcattccacttctctacactcaaccaatccacaatgacagcaaaatcaactaaccccatcttcttcttcactctgttcttcctcattttcacattaaccccatctttttccattgagaatgatgttaaatgtcttgaaggtatcaaatctgcatttcctgaccctttaaacaagctctcatcttggtcattctcaaatacttctgtagcttcaatttgtaaacttgttggtgtttcttgctggaatgagaaagaaaatcgccttctttctcttcaacttccttcaatgtctttatctggggcactcccatcttcccttcagttctgatcttctattcaatctcttgatctctctggtaactctttttccggtccaatcccagttcaaatctgctcatggttaccttatctcgtcaatctcgatctctccagcaactatttctacggttccataccccctgagttcatcaactgcaaattactaaacacccttctgctaaatgacaacaaactcactgggtcaatcccatttgagatcggcaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="36064" stop="37261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36363" g_stop="36961" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U586494" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36363" e_stop="36961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGCC-TCTTCATTCTTGTTTTTGCTCTGTTCTTCTTCCTAATCTCTTCTCATTCCACTTCTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCT</genome_strand>
        <mrna_strand>GAGGCACAGCCTTCTTCATTCTTGTTTTTGCCCCGTTCTTCTTCCTAATCTCTCCTCATTCCACTTCTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTCCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGGGCACTCCCATCTTCCCTTCAGTTCTGATCTTCTATTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTACGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTACTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594571" ref_strand="+" ref_description="SGN-U594571 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118487838|gb|ABK95742.1| (e_value=3e-11) unknown; ">
      <seq>agtttaccgaaacttaagaggagatctgcgaattcagaaacctccaaatcgaaacttcatcggcggtgagaaaacggagatacaatcaattctatggattctccattttcgccggcaatttatctcttcatcatcatctccttctccttctcctttcttttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaaggttttctctcttatttccttcgtattgataattgatcattgttttagatttgaattttatgcatctttatcatcagttagctgaggcgtatttgcttgtagatttatatgatcaattaggtaggaagaactccaattttgcttgttttaggaaaaaatatgcctgaatagaccaaatgaaaacagttgatgaatcagattgtagttgatcgatagtactttggaggtagagaaacgtgtagagtgtagacagttgacactactttggaggtagagaaacgtgtagagtatgtgcagancttactactaccttggangtagagaaatgggtagagtatatgcagaactgaccactaccttngangtagagatgtgaagttgtttctganagaccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40013" stop="41358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40311" g_stop="41058" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U594571" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40311" e_stop="41058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACCGAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCA</genome_strand>
        <mrna_strand>AGTTTACCGAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGANCTTACTACTACCTTGGANGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTNGANGTAGAGATGTGAAGTTGTTTCTGANAGACCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567719" ref_strand="+" ref_description="SGN-U567719 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157350868|emb|CAO40983.1| (e_value=2e-55) unnamed; (*ATH) AT1G69980.1 (e_value=4e-38) | Symbol: None | expressed protein | chr1:26360043-26361330 REVERSE | Aliases: F20P5.28, F20P5_28; ">
      <seq>aaaacttaagaggagatctgcgaattcagaaacctccaaatcgaaacttcatcggcggtgagaaaacggagatacaatcaattctatggattctccattttcgccggcaatttatctcttcatcatcatctccttctccttctcctttcttttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtgattatgctgggtttactgattgtcagtggttcaaccatatacttcagaaaacggcgagcaggcgctgtatctggtgctgggcctgtcagacttccaactagttctcgattctaactaaaaatctgtacgtttgcagcttaggattcttttttaatcttcttactttcttgattcaaggttgcaatcctagtagatttgttgtttaacatgtttgaatgcttgtaaaatgttgtagtaattgattctatcaattttatagttagaagaaaatagagagtttgaagagtaactcgatactagatatccagtttgtactgtatagtccttcgaaccttttgaatccagaacattctaagtctactattttcccttcgaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40020" stop="43540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40319" g_stop="40661" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41718" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="652" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42862" g_stop="43244" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="1035" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U567719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40319" e_stop="40661"/>
          <exon e_start="41410" e_stop="41718"/>
          <exon e_start="42862" e_stop="43244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAACTTTCTGGGTTTTGTTTCCTGAATGCGTGAAACGAACCACTCCTTTGGTGGGGCAAAGTTACCTAGTACATGTTTTGGTGAGAGATAGCAAGTATCCGATCGAATAATTAAGGTATACACAAGTTGGTTAGGACACCATTGCTATCAATTAAAAAAATGATGTGAACCATTTTACAAGCTTGCCTTAGGTATTGGCTGCTCTTATACTGCATAGGGATAAACGAGTTGTGTGGTGTTATTCTCTTTAGAAGTGTGAGATTTTTTAGGTAAAGTCAAAGCTAATTGGGAGATCTTTATCGTGTTTTCATGGATTAACATGTTCATTTCCTTCTTCACGCGTGACTGAACTTTCAAAGTTAGCTGTCTCACTGTGTTTCGATATAATCATAAGAAGGATGATTCTCCCACACAACTTGTGTCAAAAGAAGACCTATTATACTTGCAGAACAGCTCTGTAAAAGAACCTCATGGCTTGAGTTCAAAAACAAGCTCTTTCTTATTCTGTAAATATTTTGGATTTAATTGAGAATATGCCTGATTCTTATGCCAAGCGGTTTAATTGGATCTGCATTATGTAGGTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGTTTAACATGTTTGAATGCTTGTAAAATGTTGTAGTAATTGATTCTATCAATTTTATAGTTAGAAGAAAATAGAGAGTTTGAAGAGTAACTCGATACTAGATATCCAGTTTGTACTGTATAGTCCTTCGAACCTTTTGAATCCAGAACATTCTAAGTCTACTATTTTCCCTTCGCATCTT</genome_strand>
        <mrna_strand>AAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGTTTAACATGTTTGAATGCTTGTAAAATGTTGTAGTAATTGATTCTATCAATTTTATAGTTAGAAGAAAATAGAGAGTTTGAAGAGTAACTCGATACTAGATATCCAGTTTGTACTGTATAGTCCTTCGAACCTTTTGAATCCAGAACATTCTAAGTCTACTATTTTCCCTTCGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594570" ref_strand="+" ref_description="SGN-U594570 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350868|emb|CAO40983.1| (e_value=4e-24) unnamed; (*ATH) AT1G69980.1 (e_value=3e-14) | Symbol: None | expressed protein | chr1:26360043-26361330 REVERSE | Aliases: F20P5.28, F20P5_28; ">
      <seq>gaaaaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacaattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtaagtacatactttttctgctttacataactgtcttgtggagaattatccaatttacattctgcaacctgtttagctgtttctttcaatatggttgctggttttagtattcagaaatcatttcactgctatccaaaagcaaaacatgaaattggatgattgtgagatccatatattagaactaaacaagttttaatagtgaaagttgatgaggcactttatagaaaaagaacgtaagttattgaggtatagagaagtaattgaagaccactcaagttaattgaaggactttgaaaggaaggaaggaggcttaatgcatttcctctctaaatgtgaaaaaatataactaggtaagtagaggggcatattgcaattcgtgaaactttcaaagaaatatttgaataatctgttatcagaaaatggagaggatattatcaggacttattatccccaatttctgtagattcctcttggattgtcatgtgtagtcaaaatataactttaggtttgaaaagttcgatactattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41108" stop="42546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41410" g_stop="42246" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="842" r_length="838" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U594570" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41410" e_stop="42246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGG-TTGAAAAGTTCGATACTATTAA</genome_strand>
        <mrna_strand>AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACAATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTTGAAAAGTTCGATACTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567355" ref_strand="+" ref_description="SGN-U567355 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|34398261|gb|AAQ67225.1| (e_value=3e-165) protein phosphatase 2A catalytic subunit [Lycopersicon esculentum]; (*ATH) AT1G10430.1 (e_value=4e-164)  Symbol: None | serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1), identical to SP:Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr p... ; (*SWP) sp|Q0E2S4|PP2A3_ORYSJ (e_value=3e-159) Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A3; ">
      <seq>gacagtagagagaagcttcgcatgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttggaagtatttcactgatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacacttgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggataagaatgttgtaacagtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcagaatttccttcagtttgacccagctccacgacagattgagcctgatactacaaggaagactccagactacttcttgtaatccgaatacttgagctgactgtttgtagcccatcagtatcgtatcttgtagatgtgtctttaaaaaaaaaggttatgttatttgaggattagtatcatcatcattgttttgtttggagtttgctctgctgctggcttttaacatatgcccgtagattcgccagagttttgacaaaaagcccttagtgtctcttgtctcgtataattttttgcaaaaagaagcagcaataacatggtacattgtgatttgttattaaagtttatcgtagaaagcaggttctttcaggtaccaatttctctgccaatggctattggcgcctgaatctgttgatagaaccaattaatttaggttttggctttccttataaaacattttttaccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48832" stop="43259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48533" g_stop="48006" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47052" i_length="954">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47051" g_stop="46987" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="593" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="702" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="780" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="972" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44115" g_stop="43558" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1530" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-U567355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48533" e_stop="48006"/>
          <exon e_start="47051" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATGGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTT</genome_strand>
        <mrna_strand>GACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATAGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567351" ref_strand="+" ref_description="SGN-U567351 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|34398263|gb|AAQ67226.1| (e_value=0) protein phosphatase 2A catalytic subunit [Lycopersicon esculentum]; (*ATH) AT1G10430.1 (e_value=2e-179)  Symbol: None | serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1), identical to SP:Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr p... ; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=2e-178) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2; ">
      <seq>agtagagagaagcttcgcatgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttggaagtatttcactgatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacacttgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggataagaatgttgtaacagtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcagaatttccttcagtttgacccagctccacgacagattgagcctgatactacaaggaagactccagactacttcttgtaatccgaatacttgagctgactgtttgtagcccatcagtatcgtatcttgtagatgtgtctttaaaaaaaaaggttatgttatttgaggattagtatcatcatcattgttttgtttggagtttgctctgctgctggcttttaacatatcccgtagattcgccagagttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48830" stop="43470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48530" g_stop="48006" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="640" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="749" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="827" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1019" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44115" g_stop="43770" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1020" r_stop="1364" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-U567351" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1365</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48530" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGAC</genome_strand>
        <mrna_strand>AGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATAT-CCCGTAGATTCGCCAGAGTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597308" ref_strand="+" ref_description="SGN-U597308 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggacaaacgtgtttcttgaattctatgcagcaaaaacatgtacttaggtaatgtaaatgagaagggagcaatacttctggagaaccaatgatggccttctcatccccatgctatttgacaagacatgtttgttcattgctttggttttccagctcctgtgaaccttgatcactgataatgattagttttttttctttcttatttcttagtattttgggggatttaaccctcaccaacaggtgaaaattcaggtagccaaccaactggactactaaaattcccaaggattaggttgattaagctttttatagaaattggtctagttgaactgctgggataatgtaagaactattataattgttcctggcgagtgaggttaccataacaagcaaaattgtttataagggtctatgcgaagatcatgtctgcctgaagtcaagctcctattattgccactgaccacccctagtctctgaagtcatgaagctctttgaatagaaaaacttagcaatcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="46519" stop="45403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46220" g_stop="45703" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-U597308" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46220" e_stop="45703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATT</genome_strand>
        <mrna_strand>GGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599368" ref_strand="+" ref_description="SGN-U599368 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gattgaagtacttgaaaatggaggtgttacaacaaaaatgaattatgttgatgatcaagttatgaaaaatagcaaagtagtgatgaaaacacacaaaagatcaagtggtgctcatcatgttcatcaaaaaattgatttcaatttggtgagtaaaagaagagttcctaatggtcctgacccaatccacaacagaagagctcggagttctcgtagaccaccaggccaagcttccaaaggaaaactcaacattaagccataattaacaaattaggccaaattagataattaaggtttgtgagatgtgttttttttttttttttgaaaaaaaaaaaaacttgtatgtaattgttgaaaaagggaagtctctatacatattgtcagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90383" stop="93650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90683" g_stop="90874" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90875" i_stop="93159" i_length="2285">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93160" g_stop="93350" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="385" r_length="193" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U599368" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90683" e_stop="90874"/>
          <exon e_start="93160" e_stop="93350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAGGTTTGTCTTTACTTTATTTCTTTATGGAGCTTTTTTTCTCTCTATAAACTTAATTGTCAAAAACATATCTGGATTATCGAGAGTTTTACATACTAATTATATATTAATTGTTCACTTGTCATATCAGAACTATTGTTATCTATGTAGTTATAAAACATACTTTAAGATGTTTAGTTTTCTTACTTGAACTATCACCGTCGTTCATGTACGAAAAGAGAACACGTGATAGTTGAAGTGTGTGTTTAACGAAAGTGGTGATAGTGTCTGTTGAAAAAGGAAATGATTGATAGTTAAAGTATAAAATTTGCGAAAAAATAATATTTAGCTATAAATCAATACTTCTTTAAAGTTGAATATTCTAAATAATTTGATAGTATGAAAAAAAATATGTATATTAATTACATATATGCCCTCACAAACCACATCTTATATAGTTTTTATAAAATATTTACATTATATATAGTATTGATCATATAAATTTTTATATTATAGTGTAGTTTAACCTATTTAGCCGATTTTCTATGTTCTCAATCAACATTTAATAAGTATAAGAGTGACATGTAATGGAAAAATTCTTTTAAACAATTTAATTGTATAAGTTATTATAATTATAATTATAATTATGATCGTCTAATGAGCATTTGATATTAATAATTGATATTTTCAGAAGTTTGGCTCACTTCTAGATGCAATTAGCTAGTGGAAGTAATAAAAAAACTATATTTTAAGACTTCCAAGAGATTTTGCCAATTATAAAAGTAAATTTGAAGTTATATTAAAACAAAAAAAAGTAACTCTATCATATAAATTTTAAAAAAAATCTCTTCAAAGCTATAGATTGTTCTAATAATTATTAATTTTTCTTCCTTTTTTTGGGAATAATTCATCAATTATTTTGAATGAAAAATTTCATATTAATTGATATAGTTCCATGTTCTTTCCCAAATTAAAAGAACAAGACCAATTCAACTTTCTTATGAGGAAAAATTTAATTTCGGATTAATTATCATACTGTTCATTTATTAGCTCATTTCATTTTTATTAATTCATTTTAGTCACCAAAATCGTGATTGATATCGTAGCTTAAATCAATCCATGAAAATCTTATTAAAATATTTTAAAAGGATATAATTTTATCTTATATGTTATATATAGTCATAAATAAAAAAATAGTTTTATTAGGTATTAAAAAATTATTTTATAAAAATATTTAAAACTGAGTATAAATTCAGCGAGTTAGATTTTGACCTATTTTTTAAAGCTCATTTCAACTCATATAACTTTTTACTCGTCTATTTATTAACTCAAAATATTTTAACCCGTTCAAATTAAGTTCGATCGATCTTATTTATTTTACGTAGAGCCCATAAAAGATGTATTTTTGAGACAAAAGTAGTAGGGTTTGCATGCTTAACTGTTACATCAAGTACTCCCACTCTTAGATTCTGTTCAAAGTTTTTGTTTACTGAATTTGTGTAACTTTAAGTTAATGAATAAATAAAATAAAAGGAATTAATTTAGAAAAAAGAAAAAGTATCTGTGTTCTGTTTTGTTGTCTTTCACTTTATTTATTCTCTTATAATTATAAATGAATAATAAAGCTAGCTTAATTATCATGATAATTAATTAACCTTTTCATTTTGTTTTCTATGCAATTTACGAGGTTCTAATTAATTAATTAACCTTTTCATGACATCTCTTTTTTTTTCCTTTTGCTTTCTTTTTTACCCTTTATCACTAAAAAAAAGCTTTTTCATCACTATAGATGCAAATCATATAAATATCTTACATATCAAAAGAATATTTTCTTAACCAAATTTAATTTTCATATATTAACGTTAGAGTCGGAATCAGTATTAAGTTTTGTTAGGGGTTCACAATTAATATTTTTATAATTTTCTAGTACAAATATAAGATATACAGAAAAGATACTGAGTTCGTTTGAATATACAAACCTCGCCTAATTAACGTGTGTGATCAACTCATCTAAGAATTTAAATTTTTATAGCCAAACATGTAAAAAATAAAAAAATTTATAATGGGTGATGATAAGAATATATCGCACTCAGAATTTTGTTTGCTCTAATACTATATTAAAGTACGTAATCTCAAGCTATAATCCCTAACTAAAAAGCTCTAAGTTGATTGAAACTTCTCGTAATTTGTTGTTAATCCATAGCTAAATGAAGTTAACGTGAAAATTTTGTTATTCAGCTACGAAATTTTATCTATGACGTTTGTGTATGTAACTAAATTTATTTATATCTAATTATTTTTTTTAACAGAAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTT-TTTTTTTTTTTTG-AAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</genome_strand>
        <mrna_strand>GATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTTTTTTTTTTTTTTTGAAAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599856" ref_strand="+" ref_description="SGN-U599856 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350870|emb|CAO40985.1| (e_value=4e-59) unnamed; (*ATH) AT1G27180.1 (e_value=1e-47) | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr1:9439846-9445993 FORWARD | Aliases: T7N9.24, T7N9_24; (*SWP) sp|Q9RBS2|POPC_RALSO (e_value=3e-20) Protein popC OS=Ralstonia solanacearum GN=popC; ">
      <seq>gcttctaaacatgaagggttgtaagaatcttttggcatttccagatgatgtgtctggattgaaacgtcttgaagtacttatcctatctgattgctcaagtctaacaaaattaccagaggacttaggtggctggaaatccttgagagagcttcttcttgatggtaccgcaataacagagctacctaactctatcttccgcctgaagaatcttcagatgttgaatttaaatgattgctggtctttgaagttgttgcctacagctatcgggaatctaagttcgctgagctctctatctcttagtggatcagctttaaaggaattgcctgattcaattggaaatttgaaagatcttgaggaattaagtttgagaatgtgcaagggactcatctcacttcctgattccctcggaaatcttagatcattaatacgactttatcttgacaacagctccataaaagaattgccaccttctgttggttcattatctcaattgaagttcctttcactcagcaattgcaagtcctttagtgagttgcccaatttcaagaatagcttctcgtcattgattaggctttgtctacaagggacctcagttagtgaacaaagtttccagttaggaagcttcgagtcccttgagattcttgagctggggtactgcacttcaatcagatctttatctagctcaattggaaagatgtcatgtttaactactttggacctacataatacatcaatttctgagttgccagacgagatatgtttattggaaaaactttgggagctgaacctgaacaactgtttgaatcttcaacatcttccggcttcaattggaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-aOi_i/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="118119" stop="119332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118418" g_stop="119255" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-U599856" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118418" e_stop="119255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGAATCTTCAACATCTTCCGGCTTCAATTGGAAGCCTT</genome_strand>
        <mrna_strand>GCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGAATCTTCAACATCTTCCGGCTTCAATTGGAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13949" PGL_stop="14566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13949" e_stop="14566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13949" e_stop="14566" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13949" stop="14566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTTTTTTCCCTCTAATTTTTCCACCGCCACTGTAACCGTCGCCGGCGGTAACATCAACCTTACTCCGGCGATCTACAGTACTGTTCCCGGCCTCACTATTATCTCCTGCCGACGGGATATCTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTGTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAGTTAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCGCCGGTGCGTCGGCAATGTGTTCGGCTTATCGGAGTTCTCTCAGCAACTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACTGTTCTCCGGAGACTTCGTGACCCTGACTCAGCTGTTCGTTCTGCTTGTGTAGAAGCTGTTTCGTCCATTGCGTCAGAAATTACTCAACCGCCGTTTTCGTCTATTTTGAAGCCGTTAATCGACGCTATTATGCACGAGCAGGATAATAATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCA</gDNA_template>
            <first_frame> F  P  F  F  P  L  I  F  P  P  P  L  *  P  S  P  A  V  T  S  T  L  L  R  R  S  T  V  L  F  P  A  S  L  L  S  P  A  D  G  I  S  S  I  L  P  S  M  A  L  Q  R  Q  P  S  D  L  K  N  R  V  N  T  C  L  N  R  L  S  D  R  D  T  L  A  V  A  T  N  E  L  E  S  I  V  R  S  L  N  S  E  G  F  S  A  F  L  T  C  I  S  S  T  D  S  S  D  K  S  P  V  R  R  Q  C  V  R  L  I  G  V  L  S  A  T  H  G  D  A  L  S  P  H  L  A  K  M  L  S  T  V  L  R  R  L  R  D  P  D  S  A  V  R  S  A  C  V  E  A  V  S  S  I  A  S  E  I  T  Q  P  P  F  S  S  I  L  K  P  L  I  D  A  I  M  H  E  Q  D  N  N  S  Q  I  G  A  S  L  C  L  A  A  A  I  E  A  S </first_frame>
            <second_frame>  S  L  F  S  L  *  F  F  H  R  H  C  N  R  R  R  R  *  H  Q  P  Y  S  G  D  L  Q  Y  C  S  R  P  H  Y  Y  L  L  P  T  G  Y  L  P  F  C  H  Q  W  R  Y  R  D  N  L  V  I  *  K  T  E  *  I  L  V  S  I  D  C  P  T  V  I  L  S  P  L  L  R  M  S  W  S  L  *  L  E  V  L  T  V  K  V  L  V  H  F  *  L  V  F  R  V  R  T  L  P  I  N  R  R  C  V  G  N  V  F  G  L  S  E  F  S  Q  Q  L  T  E  M  L  Y  H  R  I  *  R  K  C  F  L  L  F  S  G  D  F  V  T  L  T  Q  L  F  V  L  L  V  *  K  L  F  R  P  L  R  Q  K  L  L  N  R  R  F  R  L  F  *  S  R  *  S  T  L  L  C  T  S  R  I  I  I  R  R  S  E  L  R  F  A  L  L  R  Q  L  K  H   </second_frame>
            <third_frame>   P  F  F  P  S  N  F  S  T  A  T  V  T  V  A  G  G  N  I  N  L  T  P  A  I  Y  S  T  V  P  G  L  T  I  I  S  C  R  R  D  I  F  H  F  A  I  N  G  A  T  E  T  T  *  *  S  E  K  Q  S  E  Y  L  S  Q  *  I  V  R  P  *  Y  S  R  R  C  Y  E  *  A  G  V  Y  S  *  K  S  *  Q  *  R  F  *  C  I  F  D  L  Y  F  E  Y  G  L  F  R  *  I  A  G  A  S  A  M  C  S  A  Y  R  S  S  L  S  N  S  R  R  C  F  I  T  A  S  S  E  N  A  F  Y  C  S  P  E  T  S  *  P  *  L  S  C  S  F  C  L  C  R  S  C  F  V  H  C  V  R  N  Y  S  T  A  V  F  V  Y  F  E  A  V  N  R  R  Y  Y  A  R  A  G  *  *  F  A  D  R  S  F  A  L  P  C  C  G  N  *  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13988" stop="14566"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPAVTSTLLRRSTVLFPASLLSPADGISSILPSMALQRQPSDLKNRVNTCLNRLSDRDTLAVATNELESIVRSLNSEGFSAFLTCISSTDSSDKSPVRRQCVRLIGVLSATHGDALSPHLAKMLSTVLRRLRDPDSAVRSACVEAVSSIASEITQPPFSSILKPLIDAIMHEQDNNSQIGASLCLAAAIEAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16294" PGL_stop="17988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16294" e_stop="16712"/>
            <exon e_start="16880" e_stop="17345"/>
            <exon e_start="17684" e_stop="17988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.902" acc_prob="0.987" e_score="0.998"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="16294" e_stop="16712" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="16880" e_stop="17345" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17346" i_stop="17683" i_length="338"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="17684" e_stop="17988" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16294" stop="16712"/>
              <exon start="16880" stop="17345"/>
              <exon start="17684" stop="17988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG : GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAG : GTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTCTGATTCTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTT</gDNA_template>
            <first_frame> Q  N  Q  M  L  R  A  P  V  S  W  I  L  E  N  P  L  M  Q  K  Q  S  T  L  F  H  R  L  L  R  W  R  *  L  V  K  N  R  R  V  K  I  L  E  F  K  V  Q  W  I  Q  *  V  V  A  V  Q  T  Q  K  Q  S  Q  L  Y  S  T  D  H  R  M  R  S  S  T  D  M  V  I  H  S  L  D  L  G  L  F  H  S  L  R  T  T  M  T  T  W  M  Y  L  L  R  T  S  T  K  M  H  S  *  V  I  E  S  T  R  I  S  V  L  S  A  N  S  L  F  R  L  K  I  N  S  P  V  C  *  T  S  C  R :   D  L  L  A  A  H  D  M  E  *  I  P  *  R  N  V  *  M  V  W  R  D  Y  L  M  K  C  N  M  I  W  Q  *  Q  Q  G  G  F  Q  I  L  I  L  Q  E  V  H  A  A  *  S  L  V  Q  N  F  W  V  L  S  F  G  E  V  Q  K  G  K  T  H  N  Q  E  Y  P  S  Q  L  E  A  R  M  *  R  I  V  H  Q  K  L  M  L  P  S  R  T  R  I  Y  L  Q  Q  S  S  L  V  S  L  R  V  K  H  Y  V  L  S  P  V  E  E  K  R  E  *  L  E  M  V  K  L  Q  G  F  V  M  S  V  G  L  M  E  R  H  S  Q  I  A  Y  S  S  K  L  E  P  *  :  V  V  R  T  R  K  Y  F  S  L  S  A  E  I  F  E  *  S  L  Y  L  K  R  N  K  A  V  C  C  E  E  K  S  E  T  K  I  S  F  Q  Y  L  Y  L  V  M  R  T  R  N  E  G  V  C  T  E  V  V  N  V  K  S  C  L  C  K  C  Y  S  V  F  *  F  *  *  S  N  D  C  S  V  K  M  K  *  Y  S  S  K  G  E  K  V  Q  I  L  V  K  L  R  S   </first_frame>
            <second_frame>  K  I  K  C  Y  E  L  L  *  A  G  F  *  K  I  P  *  C  K  S  K  A  H  C  F  T  G  F  F  V  G  G  S  L  *  R  T  E  E  S  K  F  *  S  S  R  F  S  G  F  S  E  L  *  Q  F  K  L  R  S  K  V  N  S  I  Q  Q  T  T  G  *  E  V  P  Q  I  W  *  F  T  V  W  I  S  G  Y  S  T  L  *  G  L  Q  *  Q  H  G  C  T  C  *  G  H  Q  R  R  C  I  L  E  S  *  R  V  R  E  F  L  F  C  Q  Q  T  A  C  S  D  *  K  S  T  V  Q  F  V  R  P  P  A   : G  I  Y  W  Q  L  T  T  W  N  E  F  L  R  E  T  C  K  W  F  G  E  I  T  *  *  N  A  I  *  F  G  N  N  N  R  E  D  F  R  Y  *  F  Y  R  K  Y  M  Q  H  D  P  S  C  R  I  F  G  S  *  V  L  E  K  S  R  R  A  K  L  T  I  K  N  I  L  L  N  W  K  P  G  C  S  V  *  S  I  R  N  *  C  Y  Q  A  E  Q  E  Y  I  F  S  K  A  V  *  Y  H  S  G  *  S  I  T  F  F  L  Q  S  K  K  R  E  N  S  S  R  W  *  N  C  R  V  L  S  C  Q  *  A  *  W  N  V  I  H  K  L  H  T  A  A  N  L  S  L  R :   L  C  G  Q  E  N  T  L  V  S  V  L  K  Y  L  N  S  L  C  T  *  K  E  T  K  L  F  A  V  K  R  N  Q  R  P  R  *  V  F  N  I  Y  T  W  S  *  G  Q  E  M  R  V  S  V  Q  K  L  S  M  L  S  P  V  Y  A  N  V  I  L  F  S  D  S  S  D  P  M  I  V  L  *  R  *  N  D  I  L  P  K  G  R  K  C  K  Y  *  S  N  *  G  V  </second_frame>
            <third_frame>   K  S  N  V  T  S  S  C  K  L  D  F  R  K  S  P  D  A  K  A  K  H  T  V  S  Q  A  S  S  L  E  V  A  C  E  E  Q  K  S  Q  N  F  R  V  Q  G  S  V  D  S  V  S  C  S  S  S  N  S  E  A  K  S  T  L  F  N  R  P  P  D  E  K  F  H  R  Y  G  N  S  Q  F  G  S  R  V  I  P  L  F  E  D  Y  N  D  N  M  D  V  P  A  E  D  I  N  E  D  A  F  L  S  H  R  E  Y  E  N  F  C  S  V  S  K  Q  L  V  Q  I  E  N  Q  Q  S  S  L  L  D  L  L  Q  :  G  F  I  G  S  S  R  H  G  M  N  S  L  E  K  R  V  N  G  L  E  R  L  L  D  E  M  Q  Y  D  L  A  I  T  T  G  R  I  S  D  T  D  F  T  G  S  T  C  S  M  I  P  R  A  E  F  L  G  P  K  F  W  R  S  P  E  G  Q  N  S  Q  S  R  I  S  F  S  T  G  S  Q  D  V  A  Y  S  P  S  E  T  D  A  T  K  Q  N  K  N  I  S  S  A  K  Q  F  S  I  T  P  G  E  A  L  R  S  F  S  S  R  R  K  E  R  I  A  R  D  G  E  T  A  G  F  C  H  V  S  R  L  N  G  T  S  F  T  N  C  I  Q  Q  Q  T  *  A  L   : G  C  A  D  K  K  I  L  *  S  Q  C  *  N  I  *  I  V  F  V  L  E  K  K  Q  S  C  L  L  *  R  E  I  R  D  Q  D  K  F  S  I  S  I  P  G  H  E  D  K  K  *  G  C  L  Y  R  S  C  Q  C  *  V  L  F  M  Q  M  L  F  C  F  L  I  L  V  I  Q  *  L  F  C  E  D  E  M  I  F  F  Q  R  G  E  S  A  N  I  S  Q  I  E  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16296" stop="16712"/>
                    <exon start="16880" stop="17338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNVTSSCKLDFRKSPDAKAKHTVSQASSLEVACEEQKSQNFRVQGSVDSVSCSSSNSEAKSTLFNRPPDEKFHRYGNSQFGSRVIPLFEDYNDNMDVPAEDINEDAFLSHREYENFCSVSKQLVQIENQQSSLLDLLQGFIGSSRHGMNSLEKRVNGLERLLDEMQYDLAITTGRISDTDFTGSTCSMIPRAEFLGPKFWRSPEGQNSQSRISFSTGSQDVAYSPSETDATKQNKNISSAKQFSITPGEALRSFSSRRKERIARDGETAGFCHVSRLNGTSFTNCIQQQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24619" PGL_stop="24815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24619" e_stop="24815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="24619" e_stop="24815" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24619" stop="24815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATTCTTCAGAGCAACGTCGTAAGAGGAAAAGGATTTTGAGACCATCTTCAATATCAGCTCTTGTTTATTTTTTCTCTGTAAGGTCTTTTGTTTTATGTTTTAGTTTTTTGATTTTTGTTTTTCTTTTATCTTATCATATCCCTTTTAGTTCCTCTGTTTTTCGACCTGTTTTAGTTGTTTCAAGATTGTCTTTA</gDNA_template>
            <first_frame> W  I  L  Q  S  N  V  V  R  G  K  G  F  *  D  H  L  Q  Y  Q  L  L  F  I  F  S  L  *  G  L  L  F  Y  V  L  V  F  *  F  L  F  F  F  Y  L  I  I  S  L  L  V  P  L  F  F  D  L  F  *  L  F  Q  D  C  L   </first_frame>
            <second_frame>  G  F  F  R  A  T  S  *  E  E  K  D  F  E  T  I  F  N  I  S  S  C  L  F  F  L  C  K  V  F  C  F  M  F  *  F  F  D  F  C  F  S  F  I  L  S  Y  P  F  *  F  L  C  F  S  T  C  F  S  C  F  K  I  V  F  </second_frame>
            <third_frame>   D  S  S  E  Q  R  R  K  R  K  R  I  L  R  P  S  S  I  S  A  L  V  Y  F  F  S  V  R  S  F  V  L  C  F  S  F  L  I  F  V  F  L  L  S  Y  H  I  P  F  S  S  S  V  F  R  P  V  L  V  V  S  R  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24621" stop="24815"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSSEQRRKRKRILRPSSISALVYFFSVRSFVLCFSFLIFVFLLSYHIPFSSSVFRPVLVVSRLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24944" PGL_stop="25115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24944" e_stop="25115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="24944" e_stop="25115" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24944" stop="25115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAAAATGAGTTATTCAGTAAAAATACGGAGTTTGAGTGTGTTTATGGTAGAAATAGTACTGGTGATGATGTTGGTATTGTAAAGGAGAAATCGTATTCTGTAGATGTTTATGGCGATTTTGAATTTGGGGCTTTCGTTAGATGCCCGTTACCTCGGGTTAATTATTCA</gDNA_template>
            <first_frame> E  Q  K  *  V  I  Q  *  K  Y  G  V  *  V  C  L  W  *  K  *  Y  W  *  *  C  W  Y  C  K  G  E  I  V  F  C  R  C  L  W  R  F  *  I  W  G  F  R  *  M  P  V  T  S  G  *  L  F  </first_frame>
            <second_frame>  N  K  N  E  L  F  S  K  N  T  E  F  E  C  V  Y  G  R  N  S  T  G  D  D  V  G  I  V  K  E  K  S  Y  S  V  D  V  Y  G  D  F  E  F  G  A  F  V  R  C  P  L  P  R  V  N  Y  S </second_frame>
            <third_frame>   T  K  M  S  Y  S  V  K  I  R  S  L  S  V  F  M  V  E  I  V  L  V  M  M  L  V  L  *  R  R  N  R  I  L  *  M  F  M  A  I  L  N  L  G  L  S  L  D  A  R  Y  L  G  L  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0115F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25516" PGL_stop="26663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25516" e_stop="26663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="25516" e_stop="26663" e_length="1148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25516" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCACGGAATAGTAAAGCTTCACAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCGTTTGCAGAA</gDNA_template>
            <first_frame> E  G  G  M  L  K  T  G  S  M  I  F  V  C  V  L  W  C  G  I  K  V  Q  R  F  V  N  G  L  H  I  I  L  G  L  E  L  R  G  G  L  S  T  T  I  I  A  M  T  I  S  R  M  *  L  K  S  L  R  L  R  I  T  M  L  H  D  M  F  G  R  G  S  R  L  K  K  Q  A  F  R  I  V  L  L  E  R  R  K  N  V  I  G  Y  R  S  W  M  W  M  S  I  S  T  F  R  I  L  L  Q  G  I  N  V  *  E  A  Q  V  T  R  D  R  I  P  F  D  P  S  W  Q  M  Y  H  H  L  H  Q  E  L  R  R  L  E  Q  L  A  I  V  L  D  R  L  V  *  I  Q  L  L  L  R  V  S  L  L  D  I  L  V  V  L  R  V  P  R  D  T  N  Q  S  Y  V  P  M  L  W  T  P  L  S  S  M  W  C  I  I  S  T  *  G  K  D  L  A  T  *  I  C  H  K  V  L  Q  *  *  T  T  T  N  T  K  C  G  R  Y  S  G  R  N  F  S  D  E  *  L  H  M  S  S  I  G  R  T  I  K  M  K  D  Q  G  I  E  H  L  V  *  G  Q  R  P  L  S  H  Q  I  G  H  Y  N  S  V  K  F  G  I  P  A  F  E  T  L  F  C  Q  T  L  L  I  Y  Q  L  V  C  C  L  G  R  S  L  L  S  N  H  *  V  P  I  T  I  V  E  K  G  S  L  E  A  R  A  L  F  T  F  G  H  E  H  Y  S  I  L  G  R  N  P  S  W  R  L  N  N  N  K  M  S  Q  R  S  I  *  A  R  E  L  E  Q  R  L  K  A  N  P  T  E  *  *  S  F  T  G  S  F  C  P  G  A  G  S  P  R  L  Q   </first_frame>
            <second_frame>  K  E  G  C  *  K  R  E  V  *  S  L  C  V  Y  Y  G  V  E  S  R  F  S  A  S  *  M  D  Y  I  S  F  L  A  W  S  *  E  V  V  Y  L  R  Q  *  *  R  *  Q  Y  Q  G  C  D  *  R  A  *  D  *  E  L  Q  C  Y  T  T  C  L  A  V  D  Q  D  S  R  S  R  L  F  A  L  C  S  *  S  E  E  R  M  *  L  G  I  V  H  G  C  G  *  V  F  L  L  S  V  F  Y  S  R  A  S  M  F  E  K  L  R  L  R  G  T  G  F  P  S  I  P  R  G  K  C  I  I  I  F  T  R  N  C  G  D  *  N  N  L  P  *  F  W  T  V  W  S  E  F  S  S  F  S  G  Y  H  C  W  I  Y  L  S  S  *  E  S  R  E  T  Q  I  N  H  T  S  R  C  F  G  H  H  S  P  Q  C  G  A  S  F  P  L  E  E  R  I  *  L  H  E  F  A  T  K  Y  C  S  D  K  P  L  Q  I  P  S  V  G  G  I  Q  G  E  I  F  Q  T  S  S  Y  I  C  R  R  L  A  E  Q  S  K  *  R  I  K  G  *  S  T  W  F  R  D  R  G  H  *  A  T  K  L  A  I  T  I  L  *  S  L  G  Y  R  P  S  R  L  C  F  V  K  L  C  *  F  I  N  W  F  V  A  L  G  E  V  F  F  L  I  T  E  S  R  *  L  S  *  R  K  E  V  *  K  P  G  L  C  S  P  L  D  T  S  T  I  P  F  S  G  E  I  R  L  G  D  *  T  T  I  R  *  V  N  V  Q  S  K  L  G  S  L  N  K  G  S  K  P  I  P  R  N  S  K  A  S  Q  G  L  S  V  Q  V  Q  V  V  R  V  C  R  </second_frame>
            <third_frame>   R  R  D  V  E  N  G  K  Y  D  L  C  V  C  T  M  V  W  N  Q  G  S  A  L  R  E  W  I  T  Y  H  S  W  L  G  V  E  R  W  F  I  Y  D  N  N  S  D  D  N  I  K  D  V  I  E  E  L  E  I  E  N  Y  N  V  T  R  H  V  W  P  W  I  K  T  Q  E  A  G  F  S  H  C  A  L  R  A  K  K  E  C  N  W  V  S  F  M  D  V  D  E  Y  F  Y  F  P  Y  S  T  P  G  H  Q  C  L  R  S  S  G  Y  A  G  Q  D  S  L  R  S  L  V  A  N  V  S  S  S  S  P  G  I  A  E  I  R  T  T  C  H  S  F  G  P  S  G  L  N  S  A  P  S  Q  G  I  T  V  G  Y  T  C  R  L  K  S  P  E  R  H  K  S  I  I  R  P  D  A  L  D  T  T  L  L  N  V  V  H  H  F  H  L  R  K  G  F  S  Y  M  N  L  P  Q  S  T  A  V  I  N  H  Y  K  Y  Q  V  W  E  V  F  R  A  K  F  F  R  R  V  A  T  Y  V  V  D  W  Q  N  N  Q  N  E  G  S  R  D  R  A  P  G  L  G  T  E  A  I  E  P  P  N  W  P  L  Q  F  C  E  V  W  D  T  G  L  R  D  F  V  L  S  N  F  A  D  L  S  T  G  L  L  P  W  E  K  S  S  F  *  S  L  S  P  D  N  Y  R  R  E  R  K  S  R  S  Q  G  F  V  H  L  W  T  R  A  L  F  H  S  R  E  K  S  V  L  E  I  E  Q  Q  *  D  E  S  T  F  N  L  S  *  G  A  *  T  K  A  Q  S  Q  S  H  G  I  V  K  L  H  R  V  F  L  S  R  C  R  *  S  A  F  A  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25518" stop="26420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDVENGKYDLCVCTMVWNQGSALREWITYHSWLGVERWFIYDNNSDDNIKDVIEELEIENYNVTRHVWPWIKTQEAGFSHCALRAKKECNWVSFMDVDEYFYFPYSTPGHQCLRSSGYAGQDSLRSLVANVSSSSPGIAEIRTTCHSFGPSGLNSAPSQGITVGYTCRLKSPERHKSIIRPDALDTTLLNVVHHFHLRKGFSYMNLPQSTAVINHYKYQVWEVFRAKFFRRVATYVVDWQNNQNEGSRDRAPGLGTEAIEPPNWPLQFCEVWDTGLRDFVLSNFADLSTGLLPWEKSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="36363" PGL_stop="36961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36363" e_stop="36961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="36363" e_stop="36961" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36363" stop="36961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCACAGCCTCTTCATTCTTGTTTTTGCTCTGTTCTTCTTCCTAATCTCTTCTCATTCCACTTCTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCT</gDNA_template>
            <first_frame> Q  A  Q  P  L  H  S  C  F  C  S  V  L  L  P  N  L  F  S  F  H  F  S  T  L  N  Q  S  T  M  T  A  K  S  T  N  P  I  F  F  F  T  L  F  F  L  I  F  T  L  T  P  S  F  S  I  E  N  D  V  K  C  L  E  G  I  K  S  A  F  S  D  P  L  N  K  L  S  S  W  S  F  S  N  T  S  V  A  S  I  C  K  L  V  G  V  S  C  W  N  E  K  E  N  R  L  L  S  L  Q  L  P  S  M  S  L  S  G  S  L  P  S  S  L  Q  F  C  S  S  L  Q  S  L  D  L  S  G  N  S  F  S  G  P  I  P  V  Q  I  C  S  W  L  P  Y  L  V  N  L  D  L  S  S  N  Y  F  S  G  S  I  P  P  E  F  I  N  C  K  F  L  N  T  L  L  L  N  D  N  K  L  T  G  S  I  P  F  E  I  G  R   </first_frame>
            <second_frame>  K  H  S  L  F  I  L  V  F  A  L  F  F  F  L  I  S  S  H  S  T  S  L  H  S  T  N  P  Q  *  Q  Q  N  Q  L  T  P  S  S  S  S  L  C  S  S  S  F  S  H  *  P  H  L  F  P  L  R  M  M  L  N  V  L  K  V  S  N  L  H  F  L  T  L  *  T  S  S  H  L  G  H  S  Q  I  L  L  *  L  Q  F  V  N  L  L  V  F  L  A  G  M  R  K  K  I  A  F  F  L  F  N  F  L  Q  C  L  Y  L  V  H  S  H  L  P  F  S  S  V  L  L  F  N  L  L  I  S  L  V  T  L  F  P  V  Q  S  Q  F  K  S  A  H  G  Y  L  I  S  S  I  S  I  S  P  A  T  I  S  P  V  P  Y  P  L  S  S  S  T  A  N  S  *  T  P  F  C  *  M  T  T  N  S  L  G  Q  S  H  L  R  S  A  G  </second_frame>
            <third_frame>   S  T  A  S  S  F  L  F  L  L  C  S  S  S  *  S  L  L  I  P  L  L  Y  T  Q  P  I  H  N  D  S  K  I  N  *  P  H  L  L  L  H  S  V  L  P  H  F  H  I  N  P  I  F  F  H  *  E  *  C  *  M  S  *  R  Y  Q  I  C  I  F  *  P  F  K  Q  A  L  I  L  V  I  L  K  Y  F  C  S  F  N  L  *  T  C  W  C  F  L  L  E  *  E  R  K  S  P  S  F  S  S  T  S  F  N  V  F  I  W  F  T  P  I  F  P  S  V  L  F  F  S  S  I  S  *  S  L  W  *  L  F  F  R  S  N  P  S  S  N  L  L  M  V  T  L  S  R  Q  S  R  S  L  Q  Q  L  F  L  R  F  H  T  P  *  V  H  Q  L  Q  I  P  K  H  P  S  A  K  *  Q  Q  T  H  W  V  N  P  I  *  D  R  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36363" stop="36959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAQPLHSCFCSVLLPNLFSFHFSTLNQSTMTAKSTNPIFFFTLFFLIFTLTPSFSIENDVKCLEGIKSAFSDPLNKLSSWSFSNTSVASICKLVGVSCWNEKENRLLSLQLPSMSLSGSLPSSLQFCSSLQSLDLSGNSFSGPIPVQICSWLPYLVNLDLSSNYFSGSIPPEFINCKFLNTLLLNDNKLTGSIPFEIGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40311" PGL_stop="43244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40311" e_stop="41058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="40311" e_stop="41058" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40311" stop="41058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTACCGAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCA</gDNA_template>
            <first_frame> N  L  P  K  L  K  R  R  S  A  N  S  E  T  S  K  S  K  L  H  R  R  *  E  N  G  D  T  I  N  S  M  D  S  P  F  S  P  A  I  Y  L  F  I  I  I  S  F  S  F  S  F  L  L  V  S  S  S  P  N  S  S  L  G  L  D  A  I  Y  N  G  E  A  E  Q  R  D  E  S  G  I  I  R  R  R  H  L  M  S  F  K  E  T  P  I  G  T  N  I  T  Y  D  C  S  P  S  G  P  C  V  P  C  S  Y  S  E  K  V  F  S  L  I  S  F  V  L  I  I  D  H  C  F  R  F  E  F  Y  A  S  L  S  S  V  S  *  G  V  F  A  C  R  F  I  *  S  I  R  *  E  E  L  Q  F  C  L  F  *  E  K  I  C  L  N  R  P  N  E  N  S  *  *  I  R  L  *  L  I  D  S  T  L  E  V  E  K  R  V  E  C  R  Q  L  T  L  L  W  R  *  R  N  V  *  S  M  C  R  P  Y  Y  Y  L  G  G  R  E  M  G  R  V  Y  A  E  L  T  T  T  L  E  V  E  M  *  S  C  F  *  *  T  L  </first_frame>
            <second_frame>  I  Y  R  N  L  R  G  D  L  R  I  Q  K  P  P  N  R  N  F  I  G  G  E  K  T  E  I  Q  S  I  L  W  I  L  H  F  R  R  Q  F  I  S  S  S  S  S  P  S  P  S  P  F  F  *  F  L  H  L  R  I  H  P  *  G  S  T  Q  S  I  M  A  K  R  N  K  E  M  K  A  E  S  *  G  V  D  I  *  *  A  L  R  R  R  L  L  V  Q  I  S  L  M  I  V  L  L  L  V  L  V  F  L  A  R  T  P  K  R  F  S  L  L  F  P  S  Y  *  *  L  I  I  V  L  D  L  N  F  M  H  L  Y  H  Q  L  A  E  A  Y  L  L  V  D  L  Y  D  Q  L  G  R  K  N  S  N  F  A  C  F  R  K  K  Y  A  *  I  D  Q  M  K  T  V  D  E  S  D  C  S  *  S  I  V  L  W  R  *  R  N  V  *  S  V  D  S  *  H  Y  F  G  G  R  E  T  C  R  V  C  A  D  L  T  T  T  L  E  V  E  K  W  V  E  Y  M  Q  N  *  P  L  P  W  R  *  R  C  E  V  V  S  D  R  P  S </second_frame>
            <third_frame>   F  T  E  T  *  E  E  I  C  E  F  R  N  L  Q  I  E  T  S  S  A  V  R  K  R  R  Y  N  Q  F  Y  G  F  S  I  F  A  G  N  L  S  L  H  H  H  L  L  L  L  L  L  S  F  S  F  F  I  S  E  F  I  P  R  A  R  R  N  L  *  W  R  S  G  T  K  R  *  K  R  N  H  K  A  *  T  S  D  E  L  *  G  D  A  Y  W  Y  K  Y  H  L  *  L  F  S  F  W  S  L  C  S  L  L  V  L  R  K  G  F  L  S  Y  F  L  R  I  D  N  *  S  L  F  *  I  *  I  L  C  I  F  I  I  S  *  L  R  R  I  C  L  *  I  Y  M  I  N  *  V  G  R  T  P  I  L  L  V  L  G  K  N  M  P  E  *  T  K  *  K  Q  L  M  N  Q  I  V  V  D  R  *  Y  F  G  G  R  E  T  C  R  V  *  T  V  D  T  T  L  E  V  E  K  R  V  E  Y  V  Q  T  L  L  L  P  W  R  *  R  N  G  *  S  I  C  R  T  D  H  Y  L  G  G  R  D  V  K  L  F  L  I  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40380" stop="40745"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGDTINSMDSPFSPAIYLFIIISFSFSFLLVSSSPNSSLGLDAIYNGEAEQRDESGIIRRRHLMSFKETPIGTNITYDCSPSGPCVPCSYSEKVFSLISFVLIIDHCFRFEFYASLSSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41410" e_stop="42246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="41410" e_stop="42246" e_length="837"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41410" stop="42246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAA</gDNA_template>
            <first_frame> K  D  E  K  Y  R  C  S  E  T  G  Y  R  I  P  F  N  C  I  E  I  K  A  S  T  K  E  V  K  N  K  K  G  K  K  K  R  S  A  L  E  D  T  Y  T  A  V  R  P  H  A  M  K  H  N  E  Q  A  L  T  S  S  V  R  Q  R  N  L  L  D  D  S  S  S  S  K  S  G  I  H  T  Y  I  T  Y  R  S  C  V  L  S  I  N  E  E  K  L  S  V  L  G  F  E  V  S  T  Y  F  F  C  F  T  *  L  S  C  G  E  L  S  N  L  H  S  A  T  C  L  A  V  S  F  N  M  V  A  G  F  S  I  Q  K  S  F  H  C  Y  P  K  A  K  H  E  I  G  *  L  *  D  P  Y  I  R  T  K  Q  V  L  I  V  K  V  D  E  A  L  Y  R  K  R  T  *  V  I  E  V  *  R  S  N  *  R  P  L  K  L  I  E  G  L  *  K  E  G  R  R  L  N  A  F  P  L  *  M  *  K  N  I  T  R  *  V  E  G  H  I  A  I  R  E  T  F  K  E  I  F  E  *  S  V  I  R  K  W  R  G  Y  Y  Q  D  L  L  S  P  I  S  V  D  S  S  W  I  V  M  C  S  Q  N  I  T  L  G  *  K  V  R  Y  Y  * </first_frame>
            <second_frame>  K  M  K  S  I  G  A  V  K  L  D  I  V  S  L  S  T  V  *  R  L  K  L  V  Q  R  K  *  K  T  R  K  E  R  R  S  D  L  L  W  R  T  H  I  L  Q  *  G  H  M  P  *  S  T  M  N  K  L  L  P  P  R  *  D  K  E  I  C  W  T  I  H  P  R  Q  R  V  E  Y  I  R  I  *  L  I  G  A  V  F  F  Q  *  M  R  R  S  C  Q  Y  L  G  L  R  *  V  H  T  F  S  A  L  H  N  C  L  V  E  N  Y  P  I  Y  I  L  Q  P  V  *  L  F  L  S  I  W  L  L  V  L  V  F  R  N  H  F  T  A  I  Q  K  Q  N  M  K  L  D  D  C  E  I  H  I  L  E  L  N  K  F  *  *  *  K  L  M  R  H  F  I  E  K  E  R  K  L  L  R  Y  R  E  V  I  E  D  H  S  S  *  L  K  D  F  E  R  K  E  G  G  L  M  H  F  L  S  K  C  E  K  I  *  L  G  K  *  R  G  I  L  Q  F  V  K  L  S  K  K  Y  L  N  N  L  L  S  E  N  G  E  D  I  I  R  T  Y  Y  P  Q  F  L  *  I  P  L  G  L  S  C  V  V  K  I  *  L  *  V  E  K  F  D  T  I   </second_frame>
            <third_frame>   R  *  K  V  *  V  Q  *  N  W  I  S  Y  P  F  Q  L  Y  R  D  *  S  *  Y  K  G  S  E  K  Q  E  R  K  E  E  A  I  C  F  G  G  H  I  Y  C  S  K  A  T  C  H  E  A  Q  *  T  S  S  Y  L  L  G  K  T  K  K  F  A  G  R  F  I  L  V  K  E  W  N  T  Y  V  Y  N  L  *  E  L  C  S  F  N  K  *  G  E  A  V  S  T  W  V  *  G  K  Y  I  L  F  L  L  Y  I  T  V  L  W  R  I  I  Q  F  T  F  C  N  L  F  S  C  F  F  Q  Y  G  C  W  F  *  Y  S  E  I  I  S  L  L  S  K  S  K  T  *  N  W  M  I  V  R  S  I  Y  *  N  *  T  S  F  N  S  E  S  *  *  G  T  L  *  K  K  N  V  S  Y  *  G  I  E  K  *  L  K  T  T  Q  V  N  *  R  T  L  K  G  R  K  E  A  *  C  I  S  S  L  N  V  K  K  Y  N  *  V  S  R  G  A  Y  C  N  S  *  N  F  Q  R  N  I  *  I  I  C  Y  Q  K  M  E  R  I  L  S  G  L  I  I  P  N  F  C  R  F  L  L  D  C  H  V  *  S  K  Y  N  F  R  L  K  S  S  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41410" stop="41748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDEKYRCSETGYRIPFNCIEIKASTKEVKNKKGKKKRSALEDTYTAVRPHAMKHNEQALTSSVRQRNLLDDSSSSKSGIHTYITYRSCVLSINEEKLSVLGFEVSTYFFCFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40319" e_stop="40661"/>
            <exon e_start="41410" e_stop="41718"/>
            <exon e_start="42862" e_stop="43244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.972" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.837" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="40319" e_stop="40661" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41410" e_stop="41718" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.837">
            <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="42862" e_stop="43244" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40319" stop="40661"/>
              <exon start="41410" stop="41718"/>
              <exon start="42862" stop="43244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTTAAGAGGAGATCTGCGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG : AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG : GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGTTTAACATGTTTGAATGCTTGTAAAATGTTGTAGTAATTGATTCTATCAATTTTATAGTTAGAAGAAAATAGAGAGTTTGAAGAGTAACTCGATACTAGATATCCAGTTTGTACTGTATAGTCCTTCGAACCTTTTGAATCCAGAACATTCTAAGTCTACTATTTTCCCTTCGCATCTT</gDNA_template>
            <first_frame> E  T  *  E  E  I  C  E  F  R  N  L  Q  I  E  T  S  S  A  V  R  K  R  R  Y  N  Q  F  Y  G  F  S  I  F  A  G  N  L  S  L  H  H  H  L  L  L  L  L  L  S  F  S  F  F  I  S  E  F  I  P  R  A  R  R  N  L  *  W  R  S  G  T  K  R  *  K  R  N  H  K  A  *  T  S  D  E  L  *  G  D  A  Y  W  Y  K  Y  H  L  *  L  F  S  F  W  S  L  C  S  L  L  V  L  R  K   : E  R  *  K  V  *  V  Q  *  N  W  I  S  Y  P  F  Q  L  Y  R  D  *  S  *  Y  K  G  S  E  K  Q  E  R  K  E  E  A  I  C  F  G  G  H  I  Y  C  S  K  A  T  C  H  E  A  Q  *  T  S  S  Y  L  L  G  K  T  K  K  F  A  G  R  F  I  L  V  K  E  W  N  T  Y  V  Y  N  L  *  E  L  C  S  F  N  K  *  G  E  A  V  S  T  W  V  *   : G  D  Y  A  G  F  T  D  C  Q  W  F  N  H  I  L  Q  K  T  A  S  R  R  C  I  W  C  W  A  C  Q  T  S  N  *  F  S  I  L  T  K  N  L  Y  V  C  S  L  G  F  F  F  N  L  L  T  F  L  I  Q  G  C  N  P  S  R  F  V  V  *  H  V  *  M  L  V  K  C  C  S  N  *  F  Y  Q  F  Y  S  *  K  K  I  E  S  L  K  S  N  S  I  L  D  I  Q  F  V  L  Y  S  P  S  N  L  L  N  P  E  H  S  K  S  T  I  F  P  S  H  L </first_frame>
            <second_frame>  K  L  K  R  R  S  A  N  S  E  T  S  K  S  K  L  H  R  R  *  E  N  G  D  T  I  N  S  M  D  S  P  F  S  P  A  I  Y  L  F  I  I  I  S  F  S  F  S  F  L  L  V  S  S  S  P  N  S  S  L  G  L  D  A  I  Y  N  G  E  A  E  Q  R  D  E  S  G  I  I  R  R  R  H  L  M  S  F  K  E  T  P  I  G  T  N  I  T  Y  D  C  S  P  S  G  P  C  V  P  C  S  Y  S  E  K  :  K  D  E  K  Y  R  C  S  E  T  G  Y  R  I  P  F  N  C  I  E  I  K  A  S  T  K  E  V  K  N  K  K  G  K  K  K  R  S  A  L  E  D  T  Y  T  A  V  R  P  H  A  M  K  H  N  E  Q  A  L  T  S  S  V  R  Q  R  N  L  L  D  D  S  S  S  S  K  S  G  I  H  T  Y  I  T  Y  R  S  C  V  L  S  I  N  E  E  K  L  S  V  L  G  F  E  :  V  I  M  L  G  L  L  I  V  S  G  S  T  I  Y  F  R  K  R  R  A  G  A  V  S  G  A  G  P  V  R  L  P  T  S  S  R  F  *  L  K  I  C  T  F  A  A  *  D  S  F  L  I  F  L  L  S  *  F  K  V  A  I  L  V  D  L  L  F  N  M  F  E  C  L  *  N  V  V  V  I  D  S  I  N  F  I  V  R  R  K  *  R  V  *  R  V  T  R  Y  *  I  S  S  L  Y  C  I  V  L  R  T  F  *  I  Q  N  I  L  S  L  L  F  S  L  R  I   </second_frame>
            <third_frame>   N  L  R  G  D  L  R  I  Q  K  P  P  N  R  N  F  I  G  G  E  K  T  E  I  Q  S  I  L  W  I  L  H  F  R  R  Q  F  I  S  S  S  S  S  P  S  P  S  P  F  F  *  F  L  H  L  R  I  H  P  *  G  S  T  Q  S  I  M  A  K  R  N  K  E  M  K  A  E  S  *  G  V  D  I  *  *  A  L  R  R  R  L  L  V  Q  I  S  L  M  I  V  L  L  L  V  L  V  F  L  A  R  T  P  K  R :   K  M  K  S  I  G  A  V  K  L  D  I  V  S  L  S  T  V  *  R  L  K  L  V  Q  R  K  *  K  T  R  K  E  R  R  S  D  L  L  W  R  T  H  I  L  Q  *  G  H  M  P  *  S  T  M  N  K  L  L  P  P  R  *  D  K  E  I  C  W  T  I  H  P  R  Q  R  V  E  Y  I  R  I  *  L  I  G  A  V  F  F  Q  *  M  R  R  S  C  Q  Y  L  G  L  R :   *  L  C  W  V  Y  *  L  S  V  V  Q  P  Y  T  S  E  N  G  E  Q  A  L  Y  L  V  L  G  L  S  D  F  Q  L  V  L  D  S  N  *  K  S  V  R  L  Q  L  R  I  L  F  *  S  S  Y  F  L  D  S  R  L  Q  S  *  *  I  C  C  L  T  C  L  N  A  C  K  M  L  *  *  L  I  L  S  I  L  *  L  E  E  N  R  E  F  E  E  *  L  D  T  R  Y  P  V  C  T  V  *  S  F  E  P  F  E  S  R  T  F  *  V  Y  Y  F  P  F  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40380" stop="40661"/>
                    <exon start="41410" stop="41718"/>
                    <exon start="42862" stop="42978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGDTINSMDSPFSPAIYLFIIISFSFSFLLVSSSPNSSLGLDAIYNGEAEQRDESGIIRRRHLMSFKETPIGTNITYDCSPSGPCVPCSYSEKKDEKYRCSETGYRIPFNCIEIKASTKEVKNKKGKKKRSALEDTYTAVRPHAMKHNEQALTSSVRQRNLLDDSSSSKSGIHTYITYRSCVLSINEEKLSVLGFEVIMLGLLIVSGSTIYFRKRRAGAVSGAGPVRLPTSSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48533" PGL_stop="43558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48533" e_stop="48006"/>
            <exon e_start="47051" e_stop="46987"/>
            <exon e_start="45244" e_stop="45136"/>
            <exon e_start="45052" e_stop="44975"/>
            <exon e_start="44442" e_stop="44251"/>
            <exon e_start="44115" e_stop="43558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.791" e_score="0.998"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48533" e_stop="48006" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.791">
            <gDNA_intron_boundary i_start="48005" i_stop="47052" i_length="954"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47051" e_stop="46987" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45136" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.977">
            <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45052" e_stop="44975" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44251" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="44115" e_stop="43558" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48533" stop="48006"/>
              <exon start="47051" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG : GTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT : GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG : ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG : GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG : GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATGGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTT</gDNA_template>
            <first_frame> H  S  R  E  K  L  R  M  N  G  D  E  F  Q  K  Q  E  M  I  Q  R  L  K  P  *  F  L  H  Q  C  S  N  R  *  F  L  F  D  F  N  L  R  R  A  K  T  P  I  L  L  V  N  F  I  A  I  G  F  Y  L  D  S  I  *  G  L  L  G  L  F  L  L  I  E  A  V  R  N  I  *  A  G  D  C  R  G  *  F  C  L  K  K  C  R  R  T  R  M  *  I  G  R  S  S  N  *  W  S  A  S  R  Y  R  R  R  R  *  R  R  C  V  N  K  Q  G  R  Y  *  W  R  N  G  M  C  N  R  *  N  V  R  *  R  C  A  V  I  S  M  D  S  F  T  I  *  L  S  F  F  E  S  A  A  T  L  L  I  L  I  I  S  S  W  E  I  M  L  :  V  R  Y  R  D  R  I  T  I  L  R  G  N  H  E  S  R  Q  I  T  Q  V :   Y  G  F  Y  D  E  C  L  R  K  Y  G  N  A  N  V  W  K  Y  F  T  D  L  F  D  Y  L  P  L  T  A  L  I  E  S  Q  :  I  F  C  L  H  G  G  L  S  P  S  L  D  T  L  D  N  I  R  A  L  D  R  I  Q  E  :  V  P  H  E  G  P  M  C  D  L  L  W  S  D  P  D  D  R  C  G  W  G  I  S  P  R  G  A  G  Y  T  F  G  Q  D  I  A  S  Q  F  N  H  T  N  G  L  S  L  I  S  R  A  H  Q  L  V  M  E  G  F  N  W  C  Q  :  D  K  N  V  V  T  V  F  S  A  P  N  Y  C  Y  R  C  G  N  M  A  A  I  L  E  I  S  E  N  M  E  Q  N  F  L  Q  F  D  P  A  P  R  Q  I  E  P  D  T  T  R  K  T  P  D  Y  F  L  *  S  E  Y  L  S  *  L  F  V  A  H  Q  Y  R  I  L  *  M  C  L  *  K  K  R  L  C  Y  L  R  I  S  I  I  I  I  V  L  F  G  V  C  S  A  A  G  F  *  H  M  P  V  D  S  P  E  F  *  Q  K  A  L  S  V  S  C  L  V  *  F  F  A  K  R  S  S  N  N  M  V  H  C  D  L  L  L  K  F  I  V  E  S  R  F  F  Q  V  P  I  S  L  P  M  A  I  G  A  *  I  C  *  W  N  Q  L  I  *  V  L  A  F  L  I  K  H  F  L  P  F </first_frame>
            <second_frame>  T  V  E  R  S  F  A  *  M  E  T  N  F  R  N  R  R  *  F  R  D  *  N  P  S  F  F  I  N  V  P  I  V  N  F  C  L  I  L  I  F  G  V  Q  K  L  R  F  C  W  S  I  S  *  Q  L  D  F  T  S  I  R  S  E  D  F  W  V  F  F  C  *  S  K  R  *  G  I  F  R  Q  V  I  V  E  D  N  F  V  *  K  N  A  V  A  R  G  C  R  S  A  D  R  A  I  D  G  V  Q  A  V  I  G  G  G  G  E  D  V  V  *  T  S  K  G  D  T  S  G  G  M  E  C  A  T  G  E  M  S  G  D  G  V  R  *  Y  P  W  T  V  L  R  S  D  *  A  F  S  N  R  R  Q  R  S  *  Y  *  L  S  L  H  G  R  L  C  W :   F  V  I  E  I  E  S  Q  F  L  G  E  T  M  K  A  D  R  S  L  K   : C  M  V  F  M  M  N  V  *  G  S  M  E  M  P  M  F  G  S  I  S  L  I  S  L  I  I  Y  H  *  R  H  S  *  R  V  R :   Y  S  V  C  M  E  D  S  H  H  P  L  I  H  L  I  T  S  E  H  W  T  V  Y  K  R :   C  H  M  K  G  R  C  V  I  S  Y  G  L  I  Q  T  I  A  V  V  G  E  Y  H  L  G  G  L  V  T  H  L  D  R  I  *  H  L  S  L  I  T  L  M  V  S  H  *  F  L  E  P  I  S  L  S  W  K  V  L  I  G  V  R :   I  R  M  L  *  Q  Y  L  V  L  Q  T  I  V  I  A  V  V  I  W  L  Q  S  *  K  *  V  K  T  W  S  R  I  S  F  S  L  T  Q  L  H  D  R  L  S  L  I  L  Q  G  R  L  Q  T  T  S  C  N  P  N  T  *  A  D  C  L  *  P  I  S  I  V  S  C  R  C  V  F  K  K  K  G  Y  V  I  *  G  L  V  S  S  S  L  F  C  L  E  F  A  L  L  L  A  F  N  I  C  P  *  I  R  Q  S  F  D  K  K  P  L  V  S  L  V  S  Y  N  F  L  Q  K  E  A  A  I  T  W  Y  I  V  I  C  Y  *  S  L  S  *  K  A  G  S  F  R  Y  Q  F  L  C  Q  W  L  L  A  P  E  S  V  D  G  T  N  *  F  R  F  W  L  S  L  *  N  I  F  Y  H   </second_frame>
            <third_frame>   Q  *  R  E  A  S  H  E  W  R  R  I  S  E  T  G  D  D  S  E  I  E  T  L  V  S  S  S  M  F  Q  S  L  I  S  V  *  F  *  S  S  A  C  K  N  S  D  S  V  G  Q  F  H  S  N  W  I  L  P  R  F  D  L  R  T  F  G  S  F  F  A  N  R  S  G  E  E  Y  L  G  R  *  L  *  R  I  I  L  F  E  K  M  P  S  H  A  D  V  D  R  Q  I  E  Q  L  M  E  C  K  P  L  S  E  A  E  V  K  T  L  C  E  Q  A  R  A  I  L  V  E  E  W  N  V  Q  P  V  K  C  P  V  T  V  C  G  D  I  H  G  Q  F  Y  D  L  I  E  L  F  R  I  G  G  N  A  P  D  T  N  Y  L  F  M  G  D  Y  V   : G  S  L  *  R  *  N  H  N  S  *  G  K  P  *  K  P  T  D  H  S  S  :  V  W  F  L  *  *  M  F  E  E  V  W  K  C  Q  C  L  E  V  F  H  *  S  L  *  L  S  T  I  D  G  T  H  R  E  S   : D  I  L  F  A  W  R  T  L  T  I  P  *  Y  T  *  *  H  P  S  T  G  P  Y  T  R   : G  A  T  *  R  A  D  V  *  S  P  M  V  *  S  R  R  S  L  W  L  G  N  I  T  S  G  G  W  L  H  I  W  T  G  Y  S  I  S  V  *  S  H  *  W  S  L  T  D  F  *  S  P  S  A  C  H  G  R  F  *  L  V  S   : G  *  E  C  C  N  S  I  *  C  S  K  L  L  L  S  L  W  *  Y  G  C  N  P  R  N  K  *  K  H  G  A  E  F  P  S  V  *  P  S  S  T  T  D  *  A  *  Y  Y  K  E  D  S  R  L  L  L  V  I  R  I  L  E  L  T  V  C  S  P  S  V  S  Y  L  V  D  V  S  L  K  K  K  V  M  L  F  E  D  *  Y  H  H  H  C  F  V  W  S  L  L  C  C  W  L  L  T  Y  A  R  R  F  A  R  V  L  T  K  S  P  *  C  L  L  S  R  I  I  F  C  K  K  K  Q  Q  *  H  G  T  L  *  F  V  I  K  V  Y  R  R  K  Q  V  L  S  G  T  N  F  S  A  N  G  Y  W  R  L  N  L  L  M  E  P  I  N  L  G  F  G  F  P  Y  K  T  F  F  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48071" stop="48006"/>
                    <exon start="47051" stop="46987"/>
                    <exon start="45244" stop="45136"/>
                    <exon start="45052" stop="44975"/>
                    <exon start="44442" stop="44251"/>
                    <exon start="44115" stop="43942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFFESAATLLILIISSWEIMLVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEISENMEQNFLQFDPAPRQIEPDTTRKTPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46220" e_stop="45703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="46220" e_stop="45703" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46220" stop="45703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATT</gDNA_template>
            <first_frame> R  Q  T  C  F  L  N  S  M  Q  Q  K  H  V  L  R  *  C  K  *  E  G  S  N  T  S  G  E  P  M  M  A  F  S  S  P  C  Y  L  T  R  H  V  C  S  L  L  W  F  S  S  S  C  E  P  *  S  L  I  M  I  S  F  F  S  F  L  F  L  S  I  L  G  D  L  T  L  T  N  R  *  K  F  R  *  P  T  N  W  T  T  K  I  P  K  D  *  V  D  *  A  F  Y  R  N  W  S  S  *  T  A  G  I  M  *  E  L  L  *  L  F  L  A  S  E  V  T  I  T  S  K  I  V  Y  K  G  L  C  E  D  H  V  C  L  K  S  S  S  Y  Y  C  H  *  P  P  L  V  S  E  V  M  K  L  F  E  *  K  N  L  A  I  K   </first_frame>
            <second_frame>  D  K  R  V  S  *  I  L  C  S  K  N  M  Y  L  G  N  V  N  E  K  G  A  I  L  L  E  N  Q  *  W  P  S  H  P  H  A  I  *  Q  D  M  F  V  H  C  F  G  F  P  A  P  V  N  L  D  H  *  *  *  L  V  F  F  L  S  Y  F  L  V  F  W  G  I  *  P  S  P  T  G  E  N  S  G  S  Q  P  T  G  L  L  K  F  P  R  I  R  L  I  K  L  F  I  E  I  G  L  V  E  L  L  G  *  C  K  N  Y  Y  N  C  S  W  R  V  R  L  P  *  Q  A  K  L  F  I  R  V  Y  A  K  I  M  S  A  *  S  Q  A  P  I  I  A  T  D  H  P  *  S  L  K  S  *  S  S  L  N  R  K  T  *  Q  S  N  </second_frame>
            <third_frame>   T  N  V  F  L  E  F  Y  A  A  K  T  C  T  *  V  M  *  M  R  R  E  Q  Y  F  W  R  T  N  D  G  L  L  I  P  M  L  F  D  K  T  C  L  F  I  A  L  V  F  Q  L  L  *  T  L  I  T  D  N  D  *  F  F  F  F  L  I  S  *  Y  F  G  G  F  N  P  H  Q  Q  V  K  I  Q  V  A  N  Q  L  D  Y  *  N  S  Q  G  L  G  *  L  S  F  L  *  K  L  V  *  L  N  C  W  D  N  V  R  T  I  I  I  V  P  G  E  *  G  Y  H  N  K  Q  N  C  L  *  G  S  M  R  R  S  C  L  P  E  V  K  L  L  L  L  P  L  T  T  P  S  L  *  S  H  E  A  L  *  I  E  K  L  S  N  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0115F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48530" e_stop="48006"/>
            <exon e_start="47101" e_stop="46987"/>
            <exon e_start="45244" e_stop="45136"/>
            <exon e_start="45052" e_stop="44975"/>
            <exon e_start="44442" e_stop="44251"/>
            <exon e_start="44115" e_stop="43770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48530" e_stop="48006" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.943">
            <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47101" e_stop="46987" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45136" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.977">
            <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45052" e_stop="44975" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44251" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="44115" e_stop="43770" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48530" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG : ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT : GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG : ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG : GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG : GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGAC</gDNA_template>
            <first_frame> S  R  E  K  L  R  M  N  G  D  E  F  Q  K  Q  E  M  I  Q  R  L  K  P  *  F  L  H  Q  C  S  N  R  *  F  L  F  D  F  N  L  R  R  A  K  T  P  I  L  L  V  N  F  I  A  I  G  F  Y  L  D  S  I  *  G  L  L  G  L  F  L  L  I  E  A  V  R  N  I  *  A  G  D  C  R  G  *  F  C  L  K  K  C  R  R  T  R  M  *  I  G  R  S  S  N  *  W  S  A  S  R  Y  R  R  R  R  *  R  R  C  V  N  K  Q  G  R  Y  *  W  R  N  G  M  C  N  R  *  N  V  R  *  R  C  A  V  I  S  M  D  S  F  T  I  *  L  S  F  F  E  S  A  A  T  L  L  I  L  I  I  S  S  W  E  I  M  L  :  T  V  D  T  I  L  S  R  L  S  H  Y  W  L  L  *  R  F  V  I  E  I  E  S  Q  F  L  G  E  T  M  K  A  D  R  S  L  K   : C  M  V  F  M  M  N  V  *  G  S  M  E  M  P  M  F  G  S  I  S  L  I  S  L  I  I  Y  H  *  R  H  S  *  R  V  R :   Y  S  V  C  M  E  D  S  H  H  P  L  I  H  L  I  T  S  E  H  W  T  V  Y  K  R :   C  H  M  K  G  R  C  V  I  S  Y  G  L  I  Q  T  I  A  V  V  G  E  Y  H  L  G  G  L  V  T  H  L  D  R  I  *  H  L  S  L  I  T  L  M  V  S  H  *  F  L  E  P  I  S  L  S  W  K  V  L  I  G  V  R :   I  R  M  L  *  Q  Y  L  V  L  Q  T  I  V  I  A  V  V  I  W  L  Q  S  *  K  *  V  K  T  W  S  R  I  S  F  S  L  T  Q  L  H  D  R  L  S  L  I  L  Q  G  R  L  Q  T  T  S  C  N  P  N  T  *  A  D  C  L  *  P  I  S  I  V  S  C  R  C  V  F  K  K  K  G  Y  V  I  *  G  L  V  S  S  S  L  F  C  L  E  F  A  L  L  L  A  F  N  I  C  P  *  I  R  Q  S  F  D </first_frame>
            <second_frame>  V  E  R  S  F  A  *  M  E  T  N  F  R  N  R  R  *  F  R  D  *  N  P  S  F  F  I  N  V  P  I  V  N  F  C  L  I  L  I  F  G  V  Q  K  L  R  F  C  W  S  I  S  *  Q  L  D  F  T  S  I  R  S  E  D  F  W  V  F  F  C  *  S  K  R  *  G  I  F  R  Q  V  I  V  E  D  N  F  V  *  K  N  A  V  A  R  G  C  R  S  A  D  R  A  I  D  G  V  Q  A  V  I  G  G  G  G  E  D  V  V  *  T  S  K  G  D  T  S  G  G  M  E  C  A  T  G  E  M  S  G  D  G  V  R  *  Y  P  W  T  V  L  R  S  D  *  A  F  S  N  R  R  Q  R  S  *  Y  *  L  S  L  H  G  R  L  C  * :   P  W  I  L  F  C  R  D  C  L  T  I  G  C  F  E  G  S  L  *  R  *  N  H  N  S  *  G  K  P  *  K  P  T  D  H  S  S  :  V  W  F  L  *  *  M  F  E  E  V  W  K  C  Q  C  L  E  V  F  H  *  S  L  *  L  S  T  I  D  G  T  H  R  E  S   : D  I  L  F  A  W  R  T  L  T  I  P  *  Y  T  *  *  H  P  S  T  G  P  Y  T  R   : G  A  T  *  R  A  D  V  *  S  P  M  V  *  S  R  R  S  L  W  L  G  N  I  T  S  G  G  W  L  H  I  W  T  G  Y  S  I  S  V  *  S  H  *  W  S  L  T  D  F  *  S  P  S  A  C  H  G  R  F  *  L  V  S   : G  *  E  C  C  N  S  I  *  C  S  K  L  L  L  S  L  W  *  Y  G  C  N  P  R  N  K  *  K  H  G  A  E  F  P  S  V  *  P  S  S  T  T  D  *  A  *  Y  Y  K  E  D  S  R  L  L  L  V  I  R  I  L  E  L  T  V  C  S  P  S  V  S  Y  L  V  D  V  S  L  K  K  K  V  M  L  F  E  D  *  Y  H  H  H  C  F  V  W  S  L  L  C  C  W  L  L  T  Y  A  R  R  F  A  R  V  L   </second_frame>
            <third_frame>   *  R  E  A  S  H  E  W  R  R  I  S  E  T  G  D  D  S  E  I  E  T  L  V  S  S  S  M  F  Q  S  L  I  S  V  *  F  *  S  S  A  C  K  N  S  D  S  V  G  Q  F  H  S  N  W  I  L  P  R  F  D  L  R  T  F  G  S  F  F  A  N  R  S  G  E  E  Y  L  G  R  *  L  *  R  I  I  L  F  E  K  M  P  S  H  A  D  V  D  R  Q  I  E  Q  L  M  E  C  K  P  L  S  E  A  E  V  K  T  L  C  E  Q  A  R  A  I  L  V  E  E  W  N  V  Q  P  V  K  C  P  V  T  V  C  G  D  I  H  G  Q  F  Y  D  L  I  E  L  F  R  I  G  G  N  A  P  D  T  N  Y  L  F  M  G  D  Y  V   : D  R  G  Y  Y  S  V  E  T  V  S  L  L  V  A  L  K  V  R  Y  R  D  R  I  T  I  L  R  G  N  H  E  S  R  Q  I  T  Q  V :   Y  G  F  Y  D  E  C  L  R  K  Y  G  N  A  N  V  W  K  Y  F  T  D  L  F  D  Y  L  P  L  T  A  L  I  E  S  Q  :  I  F  C  L  H  G  G  L  S  P  S  L  D  T  L  D  N  I  R  A  L  D  R  I  Q  E  :  V  P  H  E  G  P  M  C  D  L  L  W  S  D  P  D  D  R  C  G  W  G  I  S  P  R  G  A  G  Y  T  F  G  Q  D  I  A  S  Q  F  N  H  T  N  G  L  S  L  I  S  R  A  H  Q  L  V  M  E  G  F  N  W  C  Q  :  D  K  N  V  V  T  V  F  S  A  P  N  Y  C  Y  R  C  G  N  M  A  A  I  L  E  I  S  E  N  M  E  Q  N  F  L  Q  F  D  P  A  P  R  Q  I  E  P  D  T  T  R  K  T  P  D  Y  F  L  *  S  E  Y  L  S  *  L  F  V  A  H  Q  Y  R  I  L  *  M  C  L  *  K  K  R  L  C  Y  L  R  I  S  I  I  I  I  V  L  F  G  V  C  S  A  A  G  F  *  H  M  P  V  D  S  P  E  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48279" stop="48006"/>
                    <exon start="47101" stop="46987"/>
                    <exon start="45244" stop="45136"/>
                    <exon start="45052" stop="44975"/>
                    <exon start="44442" stop="44251"/>
                    <exon start="44115" stop="43942"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIILFEKMPSHADVDRQIEQLMECKPLSEAEVKTLCEQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEISENMEQNFLQFDPAPRQIEPDTTRKTPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="90683" PGL_stop="93350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90683" e_stop="90874"/>
            <exon e_start="93160" e_stop="93350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90683" e_stop="90874" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90875" i_stop="93159" i_length="2285"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="93160" e_stop="93350" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90683" stop="90874"/>
              <exon start="93160" stop="93350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAG : AAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTTTTTTTTTTTTTTGAAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</gDNA_template>
            <first_frame> D  *  S  T  *  K  W  R  C  Y  N  K  N  E  L  C  *  *  S  S  Y  E  K  *  Q  S  S  D  E  N  T  Q  K  I  K  W  C  S  S  C  S  S  K  N  *  F  Q  F  G  E  *  K  K  S  S  *  W  S  *  P  N  P  Q  Q  :  K  S  S  E  F  S  *  T  T  R  P  S  F  Q  R  K  T  Q  H  *  A  I  I  N  K  L  G  Q  I  R  *  L  R  F  V  R  C  V  F  F  F  F  *  K  K  K  N  L  Y  V  I  V  E  K  G  K  S  L  Y  I  L  S  D   </first_frame>
            <second_frame>  I  E  V  L  E  N  G  G  V  T  T  K  M  N  Y  V  D  D  Q  V  M  K  N  S  K  V  V  M  K  T  H  K  R  S  S  G  A  H  H  V  H  Q  K  I  D  F  N  L  V  S  K  R  R  V  P  N  G  P  D  P  I  H  N  R :   R  A  R  S  S  R  R  P  P  G  Q  A  S  K  G  K  L  N  I  K  P  *  L  T  N  *  A  K  L  D  N  *  G  L  *  D  V  F  F  F  F  F  E  K  K  K  T  C  M  *  L  L  K  K  G  S  L  Y  T  Y  C  Q  M  </second_frame>
            <third_frame>   L  K  Y  L  K  M  E  V  L  Q  Q  K  *  I  M  L  M  I  K  L  *  K  I  A  K  *  *  *  K  H  T  K  D  Q  V  V  L  I  M  F  I  K  K  L  I  S  I  W  *  V  K  E  E  F  L  M  V  L  T  Q  S  T  T   : E  E  L  G  V  L  V  D  H  Q  A  K  L  P  K  E  N  S  T  L  S  H  N  *  Q  I  R  P  N  *  I  I  K  V  C  E  M  C  F  F  F  F  L  K  K  K  K  L  V  C  N  C  *  K  R  E  V  S  I  H  I  V  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90684" stop="90874"/>
                    <exon start="93160" stop="93226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVLENGGVTTKMNYVDDQVMKNSKVVMKTHKRSSGAHHVHQKIDFNLVSKRRVPNGPDPIHNRRARSSRRPPGQASKGKLNIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="118418" PGL_stop="119255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118418" e_stop="119255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="118418" e_stop="119255" e_length="838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118418" stop="119255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGAATCTTCAACATCTTCCGGCTTCAATTGGAAGCCTT</gDNA_template>
            <first_frame> P  S  K  H  E  G  L  *  E  S  F  G  I  S  R  *  C  V  W  I  E  T  S  *  S  T  Y  P  I  *  L  L  K  S  N  K  I  T  R  G  L  R  W  L  E  I  L  E  R  A  S  S  *  W  Y  R  N  N  R  A  T  *  L  Y  L  P  P  E  E  S  S  D  V  E  F  K  *  L  L  V  F  E  V  V  A  Y  S  Y  R  E  S  K  F  A  E  L  S  I  S  *  W  I  S  F  K  G  I  A  *  F  N  W  K  F  E  R  S  *  G  I  K  F  E  N  V  Q  G  T  H  L  T  S  *  F  P  R  K  S  *  I  I  N  T  T  L  S  *  Q  Q  L  H  K  R  I  A  T  F  C  W  F  I  I  S  I  E  V  P  F  T  Q  Q  L  Q  V  L  *  *  V  A  Q  F  Q  E  *  L  L  V  I  D  *  A  L  S  T  R  D  L  S  *  *  T  K  F  P  V  R  K  L  R  V  P  *  D  S  *  A  G  V  L  H  F  N  Q  I  F  I  *  L  N  W  K  D  V  M  F  N  Y  F  G  P  T  *  Y  I  N  F  *  V  A  R  R  D  M  F  I  G  K  T  L  G  A  E  P  E  Q  L  F  E  S  S  T  S  S  G  F  N  W  K  P  </first_frame>
            <second_frame>  L  L  N  M  K  G  C  K  N  L  L  A  F  P  D  D  V  S  G  L  K  R  L  E  V  L  I  L  S  D  C  S  S  L  T  K  L  P  E  D  L  G  G  W  K  S  L  R  E  L  L  L  D  G  T  A  I  T  E  L  P  N  S  I  F  R  L  K  N  L  Q  M  L  N  L  N  D  C  W  S  L  K  L  L  P  T  A  I  G  N  L  S  S  L  S  S  L  S  L  S  G  S  A  L  K  E  L  P  D  S  I  G  N  L  K  D  L  E  E  L  S  L  R  M  C  K  G  L  I  S  L  P  D  S  L  G  N  L  R  S  L  I  R  L  Y  L  D  N  S  S  I  K  E  L  P  P  S  V  G  S  L  S  Q  L  K  F  L  S  L  S  N  C  K  S  F  S  E  L  P  N  F  K  N  S  F  S  S  L  I  R  L  C  L  Q  G  T  S  V  S  E  Q  S  F  Q  L  G  S  F  E  S  L  E  I  L  E  L  G  Y  C  T  S  I  R  S  L  S  S  S  I  G  K  M  S  C  L  T  T  L  D  L  H  N  T  S  I  S  E  L  P  D  E  I  C  L  L  E  K  L  W  E  L  N  L  N  N  C  L  N  L  Q  H  L  P  A  S  I  G  S  L </second_frame>
            <third_frame>   F  *  T  *  R  V  V  R  I  F  W  H  F  Q  M  M  C  L  D  *  N  V  L  K  Y  L  S  Y  L  I  A  Q  V  *  Q  N  Y  Q  R  T  *  V  A  G  N  P  *  E  S  F  F  L  M  V  P  Q  *  Q  S  Y  L  T  L  S  S  A  *  R  I  F  R  C  *  I  *  M  I  A  G  L  *  S  C  C  L  Q  L  S  G  I  *  V  R  *  A  L  Y  L  L  V  D  Q  L  *  R  N  C  L  I  Q  L  E  I  *  K  I  L  R  N  *  V  *  E  C  A  R  D  S  S  H  F  L  I  P  S  E  I  L  D  H  *  Y  D  F  I  L  T  T  A  P  *  K  N  C  H  L  L  L  V  H  Y  L  N  *  S  S  F  H  S  A  I  A  S  P  L  V  S  C  P  I  S  R  I  A  S  R  H  *  L  G  F  V  Y  K  G  P  Q  L  V  N  K  V  S  S  *  E  A  S  S  P  L  R  F  L  S  W  G  T  A  L  Q  S  D  L  Y  L  A  Q  L  E  R  C  H  V  *  L  L  W  T  Y  I  I  H  Q  F  L  S  C  Q  T  R  Y  V  Y  W  K  N  F  G  S  *  T  *  T  T  V  *  I  F  N  I  F  R  L  Q  L  E  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118419" stop="119255"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNMKGCKNLLAFPDDVSGLKRLEVLILSDCSSLTKLPEDLGGWKSLRELLLDGTAITELPNSIFRLKNLQMLNLNDCWSLKLLPTAIGNLSSLSSLSLSGSALKELPDSIGNLKDLEELSLRMCKGLISLPDSLGNLRSLIRLYLDNSSIKELPPSVGSLSQLKFLSLSNCKSFSELPNFKNSFSSLIRLCLQGTSVSEQSFQLGSFESLEILELGYCTSIRSLSSSIGKMSCLTTLDLHNTSISELPDEICLLEKLWELNLNNCLNLQHLPASIGSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 25 chains have been computed
$ 
$ memory statistics:
$ 28736 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2052 bytes was the average size of a spliced alignment
$ 16944 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1694 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 25 backtrace matrices have been allocated
$ 
$ date finished: 2010-02-02 04:37:31
-->
