<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 20:27:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333072" ref_strand="+" ref_description="SGN-U333072        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:6128539-6133389 FORWARD | Aliases: MEB5.12(evalue: 7e-34, score=140) genbank/nr: gi|53689729|gb|AAU89743.1| At3g17900/MEB5_12-like protein [Solanum tuberosum] (evalue: 4e-44, score=180)">
      <seq>gacatcaccaatgagtcccttcattggttcttctgatgtagcggagagagtgagtattgataagcaaattagtgctgctccgagcaatagctcggtatcagtaaatcaagtaccggaagggaaaaatctttctcaatcagtttcatttagtgagagagccactcccatacctgatgtgcttccaagtggcgattcaggttgtacacatctatggttgcagagcagagttcccttgggatgtgtgcccgctcaatctacagcaaccatcaaacttgaagtacttcccctgacggatggtataatcacacttgattctttacagattgatgtaaaggagaaaggtgtgacatatgttcctgagcattctctgaagatcaatgcaacttcaagcatttccactgggattatctgaggtgactatttacagttttcagacgtcgtaagtggacagaaagatactcatagtggtagtgtcatacgtagatgatatcgtgagtttgatgtaaatttgaggagtccctttgatgtgtgatgattttgtgtagatttataaaatgccaaaggtgagaatggattatgtgaagggattgtgactgtaccttattgtagatgatgttatgttcaatttgaagtaccaactagggggaaaattgaaaagcaaatgataaggataaaaaaaaaacaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="2125" stop="4179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2425" g_stop="2661" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="2735" i_length="74">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2736" g_stop="2839" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="341" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2840" i_stop="3547" i_length="708">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3548" g_stop="3878" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="672" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="689"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U333072" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2425" e_stop="2661"/>
          <exon e_start="2736" e_stop="2839"/>
          <exon e_start="3548" e_stop="3878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATCTTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGCCACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTAGTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTTCCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTGACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAAGTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGTTTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATCCATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCTGTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAACTAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAGTTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAATTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</genome_strand>
        <mrna_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATGTAGCGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG..........................................................................ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323167" ref_strand="+" ref_description="SGN-U323167        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: gi|53689728|gb|AAU89742.1| serine/threonine protein kinase-like [Solanum tuberosum] (evalue: 4e-16, score=87.4)">
      <seq>ggccaaatcggccgaattgattcaaacataaaccccagattcaattttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagcctatctggtttaattatatatagttattataaaaattaagaaggttattaatcttgttatttacaattatgttgagtttatatgcatatatatatatatatatatatatatatatatatatatgtgaaaattcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6694" stop="7947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6994" g_stop="7647" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="668" r_length="653" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U323167" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6994" e_stop="7647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</genome_strand>
        <mrna_strand>ATTGATTC-AAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATGTGAAAATTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318214" ref_strand="+" ref_description="SGN-U318214        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT5G15080.1 | Symbol: None | protein kinase, putative, similar to protein kinase APK1A (Arabidopsis thaliana) Swiss-Prot:Q06548 | chr5:4886131-4888791 FORWARD | Aliases: F2G14.200, F2G14_200 (evalue: 0, score=673) genbank/nr: gi|53689728|gb|AAU89742.1| serine/threonine protein kinase-like [Solanum tuberosum] (evalue: 0, score=850)">
      <seq>ggaggtggggttgttggtggggttttcatgatatttgagtttgattttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtaatatatcgtgatttcaaaacatccaacattctactagatgcggattacaatgccaaactttctgattttggtcttgccaaagatggtcctgagggtgataagacacatgtttctactcgtgtcatgggaacgtatggttatgcagcccctgagtatgtgatgacagggcatctaacgtcaaagagtgacgtctacagttttggggtagttctacttgaaatgataacaggtaggagatcgatggacaagaaccgaccaaatggggaacacaaccttgttgaatgggcacggcctcatcttggtgaaagaagaaggttttacagattggtagaccctagacttgaaggtcatttttcaataaaaggtgctcagaaagctgcacagttggctgctcgttgccttagtcgtgatcccaaagttaggcctatgatgagtgaagtggtagaagccttgaagccattaccaaatcttaaagacatggccagctcatcctactatttccagacaatgcaagcagaccgagttggatcaagtccaagtaccaaaaatggcgttaggacacagggatcattctcgaggaatggacaacaacatcctagaagtctttcaatcccaaatggttctcatgcttctccataccatcaacagtttcctcagaactcaccaaaaccaaacggcaaaacttagtattattggattgacaagtaatctgtttctatcattcttttcgttttctctccagctatgaatatattttgttggccacctcccgttttgtcgttggatgaactggcaaaagggaaggagtgcacaattaacttaagttgtgatctttgaaaatgctgaactcccacttgaaaagaatgtattgtaagcggagctcaagtccatggagtaaatattgtgtcgaatgtacctctccttcagctgattttcgcaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15059" stop="94151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15359" g_stop="15604" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="581" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="717" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19969" g_stop="20105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="854" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76">
            <donor d_prob="0.664" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20182" g_stop="20305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="978" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20306" i_stop="20676" i_length="371">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20677" g_stop="21450" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1752" r_length="774" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21451" i_stop="22842" i_length="1392">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22843" g_stop="22850" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1753" r_stop="1760" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22851" i_stop="23114" i_length="264">
            <donor d_prob="0.655" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23115" g_stop="23144" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1761" r_stop="1790" r_length="30" r_score="0.567"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U318214" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15359" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20105"/>
          <exon e_start="20182" e_stop="20305"/>
          <exon e_start="20677" e_stop="21450"/>
          <exon e_start="22843" e_stop="22850"/>
          <exon e_start="23115" e_stop="23144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAGGTAGGGCTGAGATCTCGTAATTCCTACATTAGTTACCCTTTTGGTCGATTACAGTTTATCTGTATTATGTGGCAGTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTTAAAAGACCAATTTTTCTTTGAATAGTTAACTCCAGCTTATCTATATTATGTGGCACTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTCAAAACACCAAACTTGCTTTGAAAACCTTTCTGTACAAACTCCATAACCTGAGTCACAGACTCACAGTTGAAGAGTTTTCAATATGTTTGTTATTTGTTGACTAAAACTTTCATTGGATGGCTGATAAGTACCTCTCTTACTGATTGTAATTTGTCCTACTCATTTGTCTCAGGGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAAATATTCCTATTTTCGGCCTATATTTTGATCTTGTTCCTTTTAGGCCTGAAAACGTTTAATGTTTGTTCATATATTTTTCAACCTTACATATCAATATTTGACTGTTGCCATAAGTTTGGGATAACTTACAAAATTTTAACATTTTCTCATAACATCATATGATTTTAGAGGTTGCATAAGTTCAAGAGAAATGATGTATGCAACATAGTCTATTATACTCTATACTTGAGTTTTTTTCCTTCAAGGACATGACTACTACCAAAGGAAACCTTTGGTTTGGAGCCATCGATTCTTGTGTTGAGATAGGTTGTCTATATTGCACCCTTAAAAGATAGTGACACGTGAATCTTAAATTCGGTAAGAACACGAGATGTTTTGAACATCGTAAATCTATTGGTGGTGTTGTTTTTGACCTCACACTTGTCCAGTAGAAGGTAGAGTTATCAAAAACCAATGTATCCTTAGCCTGCTGATCACGTAAGTGCATACCTTAATATATATATATGTTGTATCTTTCAAACAACTAATTTTTGTCGAGAGAAATCATAAGATGGATAGCATTGACAAGTTTATTTTTGCACTGACTACATCAATATTGGTGTTTAATTAGTCCATCTATCTACTTTATCATCCAAACTAATTTATTGATATATCAGGTGTATATGCCAAGAGTAAATTTGTGATAGTTACAGATAATAATACTTTCAGAGCTACAATATCATCTTCTTTCAACAACAGTTTAATCTTGGAGTAGTCATCCAGCTGAACATGCCAAGAATTAGCTCCACAGAGTCGAAACATCCAACTGCTTCGCGCTTACTTTCATGCAGCACGACGAGTTAACTGATCCTTGGATGTACTCTCAAATATCTTGTCGGCATTTCCAACTTCAAACCCGTCCCGCCTGTGAAACTCCTCCACCTAAAGAAAGTATCAAAACATAGTTGATCAAAGAGGCGTTTCATCGAAGTGCAAAAAGTCTAGTTTACGTTCAAGCTACCTTACTATTGGAAAAATCATAAAATTGTATACTCCCATGTGGTTGAAAGTAGAACATGTGGATTTAAACTACGCAAAATGCAGCACCGTGAATTTAGTTAAGTCCCAAGAATAGAACCTAAACCTCGAGACTACTTCGAATTAAGATATTACAATAAGCACGTGTTCGAATCCAATCACAACACATGATATCTTTTTTAGTTTTTCAACTCAGCAGACAAATGTTTTCCATTTTAAAGCTTAAGAGTAGGTAGATTTTATTCAATTACATTGCCATACAAGTATTTGAACAACCATAAAGGGTACATGACACGGCGATTATTCTCGTCTATGGTTATGAACAGGTGTTGGACGAACCAAGTCCATGTTATCGATTTATTGCTTTTACTGCAGATAAATATGCAAGAAAATTGAGGGATAACTGGAACTGACCTTTTCTGCTGGTAAATCTTTATATTGCGGTAGTACAAGTCTCTCAGCAAATTCAATGTATGAACAAGGTACTGCTTCTGTAATGCCGTCTGAAAATTCGAAAAAGGTAGAATCTGCTACAGTTGAACTTTGCAGCAAAAGACCATCAGGGCTCACTGGAAAGAAAGAGAATAAATCAAGACTTCTTTGCAATATCAGGAGACCATTTTAAAAGAACAGTTGTCGCTTAAAAGAAACGAGATTTCAAAATCAACGGGTTCCCT</genome_strand>
        <mrna_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGATGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG...................................................................................................................................................................................................................................................................................................................................................................................GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA........................................................................................................................................................................................................................................................................AAAGAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312533" ref_strand="+" ref_description="SGN-U312533        Tomato 200607 #1 [37 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:2160944-2163302 REVERSE | Aliases: F10K1.25, F10K1_25(evalue: 6e-123, score=437) genbank/nr: gi|53689727|gb|AAU89741.1| hypothetical protein [Solanum tuberosum] (evalue: 3e-133, score=478)">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtaaaaaaaaaaaataattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26804" stop="21678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26187" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="684" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="806" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="970" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1125" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22371" g_stop="21979" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1126" r_stop="1518" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1519" polyA_stop="1560"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-U312533" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1518</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="21979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAA</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAAAAAAAAAAAATAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326817" ref_strand="+" ref_description="SGN-U326817        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: AMY3 | Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-26296715 REVERSE | Aliases: T17F3.14, T17F3_14, ATAMY3, AMY3(evalue: 5e-65, score=244) genbank/nr: At1g69830/T17F3_14-like(evalue: 6e-127, score=456)">
      <seq>tgattttcaggtgagatctactgatcggaaaaaatgttgacagttactatagagcctctcgtcggccattatctccggcgaagcccaaagctatatccaaatcagaagaaaacctctcatttttctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggagtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgcaattgaaactcctttgcaaggagacacatttcaagaggtgaagatcgacataagttctaagtggtctatagcagctataaattttgtgttgaaggatgaggaaactggagtttggtatcagcacagaggtcgggacttcaagattcctcttgttatctgccttgacgatgatgctaatatcgttggtgttaaaaaggagtcgaacatatggtcaggatcactaggaaagctgtccaacatactccttaatgcagaagcttctccttctaaaggggaatcaagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29657" stop="32697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29957" g_stop="30256" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="31032" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="431" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31289" g_stop="31343" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="486" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31496" g_stop="31597" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="588" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31598" i_stop="31759" i_length="162">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31760" g_stop="31880" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="709" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443">
            <donor d_prob="0.293" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32324" g_stop="32397" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="783" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U326817" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29957" e_stop="30256"/>
          <exon e_start="30902" e_stop="31032"/>
          <exon e_start="31289" e_stop="31343"/>
          <exon e_start="31496" e_stop="31597"/>
          <exon e_start="31760" e_stop="31880"/>
          <exon e_start="32324" e_stop="32397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAGGTGAGCTTCTGTGCTTAGATGTTTCAACTTTCTTCTGTATGTGTTATGCTGCTAACGAAGCATTCAACAAAAAGCATATTCATGTATGCTGCTGATCTGATCGCTTTAGTTATTACTTTTTTGGTGGTGATGTTTAGGTGTTGGTTTATTTTGATGATGCAGGATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAGGTTGTCCAGGGTACTTTTTGCTGTGAAATGCATACCAAATGTTCATATTTCTTGCCTCTCCCTTACATTCAATCCATGTCATCTCTTTCATGTTAACCTCACTGACTTTCTCCAGAGAAGAAAATGACTTAGATATGTTGAAACATATCTTTTCTAACAATGAAGATTGTTCACCCAGGCTAAAGAAGGGTTATATCTGTTTATGAAATATCTGTTTTTGCACTACTGTACTGTTGTGAATTTATGTACTTAACAAGTTATTTTGTATTATAATAGTTCAATTACTGTAATAGTTTCTAATCAAACCATTCCTCTGCTTAGCTGATATCTCAGCATGGATAGAAAGATCCTTAATGTCTTATCTTATTTGAGTAATTCTGTGACAAATTCAAGTTGTACTGAGAAAAGAAAGTAGAAGTTAAGTTGCTCTTCTTGCATTGCAGGATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</genome_strand>
        <mrna_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTTGACAGTTACTATAGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGAGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG..................................................................................................................................................................GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGTCGGGACTTCAAGATTCCTCTTGTTATCTGCCTTGACGATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTAGGAAAGCTGTCCAACATACTCCTTAATGCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317456" ref_strand="+" ref_description="SGN-U317456        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: AMY3 | Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-26296715 REVERSE | Aliases: T17F3.14, T17F3_14, ATAMY3, AMY3(evalue: 0, score=807) genbank/nr: gi|60652321|gb|AAX33233.1| plastid alpha-amylase [Actinidia chinensis] (evalue: 0, score=829)">
      <seq>agataaggagtttggtgagtgacatttcttctgaaaagagccgaaagacaaaaaatagggaaacacaggaaaccattcttcaagaaattgagaagctggctgctgaagcttatggtatattcagaagttcaatcccaacaatactagaaactgttgtttctgactctgaggttgtacaacctgacgtgaaagtaacttcaggaactggtacaggatttgaaattttgtgccagggttttaattgggaatctcataaatccggaagatggtacaaggagctgcatgataaagctgcagagttatcttcacttggtttcagtgtgatctggttacctccaccaactgactcagtgtcaccagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacagtaaagaaattccatgaagtgggcatcaaggttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtgcagttgttgcagatgatccacatttccagggaaggggcaacaaaagtagtggagataatttccatgctgctcctaacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggctgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtatggctgaaatgctgaatagagcgccagtgttcaaattaccgattgcgtcgaggttgtgggttcaaaatgtttgtatgacgcgttgttgatttcttgcaataagagttaaactcactgcttcaattacagcggtttttggctgcgatttgtgaaatgcttgtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35552" stop="42394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35852" g_stop="36251" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36892" g_stop="37081" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="590" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38724" g_stop="38830" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="697" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39780" g_stop="40029" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="947" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1070" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1238" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41499" g_stop="42082" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1239" r_stop="1822" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U317456" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1822</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35852" e_stop="36251"/>
          <exon e_start="36892" e_stop="37081"/>
          <exon e_start="38724" e_stop="38830"/>
          <exon e_start="39780" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="42082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAGGTGTGTATTTCTCTCTTGATTTTTCTTTGCTGTTGTACCAGCAAAGGAAATTTTTTGGTGATGCTTGTCCTTCACCAGAAGATTAGAAATAATCACAAATTCAGAGAGGATGCAGAGTAGCAAACTGGAATATTTGAGAATTTGCTTGTCCCCCACCGGATGAATAGTATATCCGTTCCTTACTTTGTAATTTGAAATCAATTGCAGTGAGATATTAATCCAGAGAATTCTTTTTACATTAAAATATTTTTAATATGTCAAAATAAGGTTTTCCAAAAGGGTTGTTGGAAAAGGTGAAAGGTCAAGGATAGGACTAATTGAGATTCTTGCTCAAACTAACATTATGGTTCTTTAGCCTTCTAATATGCTAACCTAGAATCCGTGTGCGCGATATATCATTTAGAATACATTAAGATCTTGAAAACTAAATGAAGCACTAAGAACACTATATTTGCATTGTTCACATTTTTTATCCTCAAATATTTCATCTTAGTTACATTACTATCTCTTTCATAATAAGGATATATTTGCCTTTTTACGCTAATACAAAACAGATCCTTGCTTCTCATGGTCCCTCTCCGTTCTTTCCTCTTTTGCCATTCCTCTCAATTTCGTTCTTCAGAAAAGCCTTCCTGTCAATCTCTTTCTATTGTCTTCCGCATTTGATCTCCGGCATCTGCTTCCTTGTTTTCCTATGCCATTTCCTTTTCTTCTGGGAATAACTTCATCATTAGATCGGTGGTGCTATCCATTTAATATACTGCCATCGTACGGTGGAACTTCATTGGTACCACCAACACCAGCTTCAATTGTGGACTAGTAGCGGGAGCCCATGGCTGAACCTTTTTCTTTGTACATTTTTTAACATTCATTGCTTGCTGTAGTCTTTGAAATAATCACAAATTTGTGCAATTGGAAATGGTCCAAGGCAAAAGAATGATTAACGTGTTTGCTATCATTGGATCATTGATACTCAAAATTATCTAGTGAGCGAGAAATCTGAAAAGAAGAAGAGAGTAACTAAGGGGAAACAGGAATGAGAAAAAAAGAAAACTTAAGAGGAAAGAAGTAGGAGATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTAACTTTAAGGGAAATTTGAGAAATGAAAAAATTGAGACAATGCTAACCTACTATGGAAAAACCCATAAATATGGTTTAAACTCCTTGGGGGTTGGGTGAAGCAGACAAGAGAGGCCAAAATCATCATCTTTTACCCATTGGCTGGTGCTCTTATCTTCCTTTCGGAGTGCATTATCTGATTTCTATTTGCTTACTTCCAAAAGTAGACGGCATAAGTGAGGGGAGGTACACTTTCCTATACTCGTTTGATTTTCATTTGTGCTTTTAAATTGGCTGGCTTACTCTTTAAAATATCTATTAATCGCTAAAGCAATGTTCTGCAACTCCTTTACTATGGTTTAGCCAGAATAACTTTGTGGCTAGCATGACATTTTTGCTTCCCTTTCTCTTAATGAGATACGGACTGGTTTTACAAGATCTGTTTAACCAGATGTCTGAACTACCTTCTTTTTTCTACAGGGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATT</genome_strand>
        <mrna_strand>AGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336132" ref_strand="+" ref_description="SGN-U336132        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AMY3 | Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-26296715 REVERSE | Aliases: T17F3.14, T17F3_14, ATAMY3, AMY3(evalue: 1e-68, score=256) genbank/nr: gi|60652321|gb|AAX33233.1| plastid alpha-amylase [Actinidia chinensis] (evalue: 5e-67, score=257)">
      <seq>aaacacaggaaaccatttttcaagaaagagagaagctggctgcagaggcttatggtgtattcacaagttgagtcccaacaatactagaaactgttgtttctgactctgaggttgaacaacctgacgtcaaagtaacttcaggaactggtacaggatttgaaatcttgtgccagggttttaattgggaatctcataaatccggaagatggtacaatgagctgcatgataaagctgcagagctatcttcacttggtttcagtgtgatctggttacctgcaccaactgactcattgtcaccagagggatacatgcctatggatttatataacttaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35612" stop="36549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35912" g_stop="36249" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U336132" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35912" e_stop="36249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCC</genome_strand>
        <mrna_strand>AAACACAGGAAACCATTTTTCAAGAAAGAGAGAAGCTGGCTGCAGAGGCTTATGGTGTATTCACAAGTTGAGTCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGAACAACCTGACGTCAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATCTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAATGAGCTGCATGATAAAGCTGCAGAGCTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTGCACCAACTGACTCATTGTCACCAGAGGGATACATGCCTATGGATTTATATAACTTAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336133" ref_strand="+" ref_description="SGN-U336133        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AMY3 | Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-26296715 REVERSE | Aliases: T17F3.14, T17F3_14, ATAMY3, AMY3(evalue: 1e-15, score=80.5) genbank/nr: gi|60652321|gb|AAX33233.1| plastid alpha-amylase [Actinidia chinensis] (evalue: 2e-14, score=82.8)">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaattggcaaaagttctagcaaacacaaggctgtaaaattcttcagcgtatttatttttttggtacagaacgtctctcttaggttccatttggactcaacttaaaatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39870" stop="41126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40826" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U336133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336131" ref_strand="+" ref_description="SGN-U336131        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AMY3 | Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-26296715 REVERSE | Aliases: T17F3.14, T17F3_14, ATAMY3, AMY3(evalue: 1e-15, score=80.5) genbank/nr: gi|60652321|gb|AAX33233.1| plastid alpha-amylase [Actinidia chinensis] (evalue: 2e-14, score=82.8)">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39870" stop="41018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40718" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U336131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321253" ref_strand="+" ref_description="SGN-U321253        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr1:4931774-4933400 REVERSE | Aliases: F14L17.19, F14L17_19(evalue: 8e-19, score=90.1) genbank/nr: gi|2281330|gb|AAB69758.1| putative pectate lyase Nt59 [Nicotiana tabacum] (evalue: 1e-19, score=99)">
      <seq>ttaataaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaaaaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaaaactgggctaataacaggaaggcactagcagactgtgctaagggatttggtcatggtacaactggtggtaaagatggtagattctatgttgtcaccgatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42506" stop="44278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42806" g_stop="43136" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43978" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="598" r_length="258" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U321253" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42806" e_stop="43136"/>
          <exon e_start="43730" e_stop="43978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG--GA-GAAA-----AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGAC----A--AGAA---TGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGATGCAAGGCATACAATCCAATTGACAAGTGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAAGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321235" ref_strand="+" ref_description="SGN-U321235        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr1:4931774-4933400 REVERSE | Aliases: F14L17.19, F14L17_19(evalue: 2e-89, score=326) genbank/nr: Pectate(evalue: 8e-94, score=347)">
      <seq>ccattgtggatcatcttcgagaagtcgatgatcatcaggttgaaacaagaacttatgatcaacagtaataagacaattgatggcagaggtgtgtctgttcatgttgcatatggaggtggacttaccttacaatttgtgcacaatgtgattgtccacaacattagagttcatcacatcctttctaagaatggtggtatgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttcatttttggggttgacatggagccgaatatttttttttgggggggtcttttacagtaagagaagaagaaaacggctaagacatctatctgttttctctgtttttttcgactattgctttctttcttcttcctagctggtttactctataggtgaaacagtgaagatggggaagaaaacgaaaaaaagtgggttctctggagctcaaagtttatctttttgtaacagaagttttggtttacgattttctnaataaatgtaattttccctgtttgaatttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="43740" stop="46082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44040" g_stop="44426" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44528" g_stop="44770" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="630" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45215" g_stop="45777" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="1192" r_length="562" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1193" polyA_stop="1214"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U321235" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1193</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44040" e_stop="44426"/>
          <exon e_start="44528" e_stop="44770"/>
          <exon e_start="45215" e_stop="45777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCA-TTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACG-AAAAAAGTGGGTTCTCTGGAGCTC-AAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCT-AATAAATGTAATTTTCCCTGTTTGAATTTCA</genome_strand>
        <mrna_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTCATTTTTGGGGTTGACATGGAGCCGAATA-TTTTTTTTTGGGGGGG-TCTTTTACAGTAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCTGTTTTTTT-CGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAACAGTGAAGATGGGGAAGAAAACGAAAAAAAGTGGGTTCTCTGGAGCTCAAAGTTTATCTTTTTGTAACAGAAGTTTTGG--TTTACGATTTTCTNAATAAATGTAATTTTCCCTGTTTGAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328491" ref_strand="+" ref_description="SGN-U328491        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr5:6821992-6825983 FORWARD | Aliases: F5O24.110, F5O24_110(evalue: 2e-49, score=192) genbank/nr: gi|21553596|gb|AAM62689.1| zinc finger protein [Arabidopsis thaliana](evalue: 7e-48, score=193)">
      <seq>cgatccgatgcttcatgcacaaagagtagctgctattaagaaagcaaaggggacacctgccgctaggaaacgtgcctcagaatccatgaaaagttacttccgtgatccagataaccgccgcaagagaagcatatccatgaaaggggtgaaattttactgtagaaattgtggacaggaaggacataggagtaactactgtccagaaattcgagacaatacggatagacattatagatgtggattatgtggaacaaagggtcataacagaagaacttgcttaaagttgagcttaattgtaccgaaaaagacagttaaggttaatcatcattgcagcaagtgtcaaagaagtggccataacagaagaacatgccaccaaaagaatgaattcgacactaaagtggttgcaacaatcaagactcgagtaaagagaacttatagctgcagcgtgtgcttaggaaaaggacacaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatcccttgatgtttcgactttgttttcatatctcgtttaatgcattattctggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgttttaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaatataaaactgttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="47573" stop="45710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47273" g_stop="47234" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47233" i_stop="47142" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47141" g_stop="47039" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="143" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47038" i_stop="46595" i_length="444">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46594" g_stop="46004" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="734" r_length="591" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-U328491" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47273" e_stop="47234"/>
          <exon e_start="47141" e_stop="47039"/>
          <exon e_start="46594" e_stop="46004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAGGTTTGACTTGCTAACTTCATATCTTAATGATTGACCTCTAGCTGTGTGTAACTATAGACATTCACCTTCTTGCCATGACACTTGTTATGCAGAAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAGGTGTAAAAAGTTTTAGCTCATGTCACACTTAAATTAATGATGTTTTTGCTATCTTCTTTGGATATATCATTAGCTGAAACGAAAATGTCGAGTGGCACTCCTTGAATGCTTCTTTAAGGGTCTTAAACTGTTACACTAAAGAAAATAATTGGTGTAAACCACTTTATAATGACTCCATACAATTAGCAGAAATGTACAACACAATATACGTGCAAGCTAGAGGACGTTCTTCTTGAGCTACATCATGGTCTCTATGTTTGTCTGTATACAGGACGTAAAAAGAGATGGTATAGAGAAAAAGAGAGAAAATATTTCATTCTTGTTTCCCTTCATTTACTTGTCACAGTAAGTTGAGTTCACCATTTGGTTTGTGTGGCGTAAATACTGCTGCACATCATTCTTGATATTCTGGTACAACATCTTACTGTCATTTTCTAATCGCAGGGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</genome_strand>
        <mrna_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG............................................................................................AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323781" ref_strand="+" ref_description="SGN-U323781        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr5:6821992-6825983 FORWARD | Aliases: F5O24.110, F5O24_110(evalue: 4e-62, score=213) genbank/nr: gi|21553596|gb|AAM62689.1| zinc finger protein [Arabidopsis thaliana](evalue: 3e-60, score=213)">
      <seq>aaaaacatcaaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccaacacagaagtcaatttgaagatcagcagatcactaaaattggatgattgcagagcctaaatgccaaaactggattatttagtaaaaggatgaagattatccatggcgatccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50139" stop="46965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49839" g_stop="49598" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="461" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="550" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47513" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="683" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47340" g_stop="47265" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="759" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-U323781" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49839" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47513"/>
          <exon e_start="47340" e_stop="47265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</genome_strand>
        <mrna_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320703" ref_strand="+" ref_description="SGN-U320703        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding protein-related, similar to DNA-binding protein p24 GI:9651810 from (Solanum tuberosum) | chr1:4929118-4930888 REVERSE | Aliases: F14L17.18, F14L17_18(evalue: 1e-84, score=310) genbank/nr: gi|9651810|gb|AAF91282.1| DNA-binding protein p24 [Solanum tuberosum](evalue: 1e-131, score=473)">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaggggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgactgaaattggatctatcatcagccttggggcaaaagattcatgtgagtttttccatgatccaaacaaaggaagaagtgatgaaggtagagtcaggaaagtgttgaaggttgagccacttccagatggctccggtcacttctttaatctcagtgttcagaacaagcttattaatttggacgagaacatttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttctggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttctaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaatgtatttggctctttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50193" stop="54299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50874" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51854" g_stop="51951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52060" g_stop="52152" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="573" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52382" g_stop="52476" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="668" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52699" g_stop="52772" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="742" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52773" i_stop="52870" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52871" g_stop="52959" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="831" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53604" g_stop="53999" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1227" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1229" polyA_stop="1256"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U320703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1227</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50874"/>
          <exon e_start="51854" e_stop="51951"/>
          <exon e_start="52060" e_stop="52152"/>
          <exon e_start="52382" e_stop="52476"/>
          <exon e_start="52699" e_stop="52772"/>
          <exon e_start="52871" e_stop="52959"/>
          <exon e_start="53604" e_stop="53999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTAATGCCTTCTTCCTTCATTCTATTACAGTGAAAATTGGACATCTATTTTGAACTATAGAACATGACTTGTTTGCCTTCCATCCTAAATGAAAACAGGTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG..............................................................................................................................................................................................................................TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA..................................................................................................GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328316" ref_strand="+" ref_description="SGN-U328316        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G15130.1 | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain; TMV response-related gene product, Nicotiana tabacum, EMBL:AB024510 | chr5:4904429-4906882 FORWARD | Aliases: F8M21.20, F8M21_20 (evalue: 1e-49, score=192) genbank/nr: DNA-binding(evalue: 5e-53, score=210)">
      <seq>gaaagatagagcaatggattctactaagaaggatgaagataagctaaattcaacaaaatgtgagatatatgaagccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaatacaaagaatattattgcaacaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtacttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggcttgagcttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaacgacgagtattgatacaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatacgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggacaaaaaatagctaaagggaatccatgccctagggcttactatcgttgcaccgtctccccctcatgcccagtcaggaaacacgttcaaagatgttctaaagacacgtccattttgaccactacatatgaaggaacacataatccccccctttcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="56983" stop="59636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57283" g_stop="57313" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57975" g_stop="58490" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58644" g_stop="58757" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="661" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58758" i_stop="59257" i_length="500">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59258" g_stop="59336" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="740" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U328316" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57283" e_stop="57313"/>
          <exon e_start="57975" e_stop="58490"/>
          <exon e_start="58644" e_stop="58757"/>
          <exon e_start="59258" e_stop="59336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAGGTACTACTAGCAGCTCGATTAGTTGGTTAGCTATACTTGAACTTTTACGTTATTGATGGGCGTTTGATTTTTAACCTTGTAATTCCCTCCGTCATTTCCCCTTAATTCCTCTACCCCTATCTAATAATGTTAAGAAAACAATAAATAGAAATGTACTATTACTTTTTCTTAATAATTAAAAAATTTTATACCGTCAGCATATATATAAATCTTCTATTCGAGGTGTATAATCAAGAAATTGTCCATACAATTATTTTTTTTTAAAAAAATGATTTGCTTTAGTCATTGGTTATCAAATTGGTTCATATTTTAAATTTTCAACTTAGAAATAAAGAATTTAAAGTTGGGATATTGAGGAGTTCTTCAAATTTCAACTTCTATAATTCAAGTTTTTGCCTTTACAAAATTTAACTATTTTTTTCGAGTAAAATTCACGTCCAAACATATTAAACGTCTATCTCTGACCCCTTTTTTTTCTCATGTTTTGTGATCTACGATAGGTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</genome_strand>
        <mrna_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCCCCCCCTTTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331256" ref_strand="+" ref_description="SGN-U331256        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>actacaaacctcatcaagtactattcttcatcatccaattcctactccacattgtgtaataatatcaaaagtgaaattggaccttcttcatatctagggaggccatgttattctaatcagccttatattacttcaaaagaacaatcagaacatgatcgttcagtacagtgccggagtcagaatttttgatgaattaattcaaaaaaaaatgcaaaagtatcacataggatttgatcatgtgacctaaaatgaattttggactactttttgtacattaaagtagaatcttcttttatacgaaaggaagactatttttgtttttattttatatgtacggtataatttttttgcaaaagatatttctttatcaacttatagaaatcctcaacaattgtatttatatgacactatttactttttagtctctcataaaaaaaggtctttttcatattcggaaaaaattgaactttaaaacttcccatgttgctcttagcaacatgtttttaagactcttttaaactccgtgcctaatcgggttcaacataagatgaaatggattaagtactaatgaagagtagtagtaatagatttttctaacggtgaattagtgagaaatttgtgttatacaacatgtttttccatttatttccaccaaatcagttcactgggaatatgctagattctcaatgaaatagtaaattttctaattttattgtatgagagcattactatttttcatcaattcaatcaaaatatcagtgaacatatcatgaccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="59279" stop="60660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59579" g_stop="60366" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U331256" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59579" e_stop="60366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAA-CTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</genome_strand>
        <mrna_strand>ACTACAAACCTCATCAAGTACT-ATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320718" ref_strand="+" ref_description="SGN-U320718        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to putative receptor-like protein kinase GI:2947063 from (Arabidopsis thaliana) | chr1:4924272-4926789 FORWARD | Aliases: F14L17.16, F14L17_16(evalue: 2e-98, score=356) genbank/nr: gi|15223744|ref|NP_172891.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana](evalue: 2e-96, score=356)">
      <seq>ctcactctattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttaggaccaaagtttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaacttgttggtccaatgcctgcttttctgttttcacttccagcaattcagtctattagtattgctaagaatcagcttagtggtgctcttccaggaagtgtgtcttgtagcaacaatctaaaatttgtcgatttttcgagtaatttattgattggaaagttgcctacttgtcttggatcaagttcaagaaacaggacagtgattaatgtttggaattgtttgtcaagtactagtactaagtctcaacatccacatacattttgtgagaaacaagctatagctgttaagccccctccaagaactagtggtgaaaaggaacaatccacagttaagcttggtgttgttttaggacttattgctggtattgttgtagttgtgggtgcatttggtttgctgatctttttcattgtgaagaaggttatgagaaatagagttgaaagttatagaaatgacagctttgcttttgagaagaattcaaccctttcaaaaactactgatggagggaaggcaaggaggacaatgagaatggtatcattaggacttccaccatatcatgttttcactttagaggaaatggaagaagcaacaaacagttttgatccaactaatctggttggagaaggttcccagggtcagctatatagaggttggcttagagatggatcagtggtcctagtaaaatgtctgaaattgaagcagaagcattcacctcaaattctgcagcagcacatggagatgatatcaaagctaaggcatcgacatttagtcagtgttcttggacactgtgttgttacttaccaagatcatccaaatacagctagcactgtatttattgtgcttgaaaacgtcgtcaatggatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64535" stop="61629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64235" g_stop="62886" g_length="1350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1350" r_length="1350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62885" i_stop="62598" i_length="288">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62597" g_stop="62464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1484" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62463" i_stop="62156" i_length="308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62155" g_stop="61929" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1485" r_stop="1711" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-U320718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64235" e_stop="62886"/>
          <exon e_start="62597" e_stop="62464"/>
          <exon e_start="62155" e_stop="61929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAGGTATATTTCCTTAATGAATCTTGAATAATGATAAGGGTCTATCGGAAATAGCCTCTCTACCTCCCGAGGTAGGGGTAAGGTCTGCGAACACTCCCCCGCTAGACCCCACACACTGTGTATGTTGTTGTTGTTGAATCTTGAATAGTGATATCGGAAACAACCTCTCTACCTCCCTAGGCAGGGGTAAGGTCTGACCCCACTTGTGGAATTACGCGGGGTATGTCGTTGAATCTTGAATAGTGATAGTGCATCATTATGACAATTTTTTCGATAACTTGATTTAATCAGGGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAGGTAAAAATGTTGATTCATTATAAAAAGCAAAATGAAAATGATATTTATTACTATATCCTGTCCATATTATTCGTCATTTTGGACGTTGAACGATTCGAATCTAGTCAAATACATAATCTACATGAGTATACGAGTCCGTAGATACTCATATTGCTATACTTTTAGTCTAGACCCAAAAAGTCAGACCCGAACAACTGTTGACATTTTAGAAAAACTAAAGATAGTAATATGGATATGCTTTTCATAAATCTTGGTGAATACAAACTTTGTGTTTTGAACATTGGGATTGATGTTATTATTAATGACAGCTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</genome_strand>
        <mrna_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG................................................................................................................................................................................................................................................................................................GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG....................................................................................................................................................................................................................................................................................................................CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326611" ref_strand="+" ref_description="SGN-U326611        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr1:4917583-4921591 REVERSE | Aliases: None(evalue: 1e-38, score=156) genbank/nr: IQ(evalue: 7e-41, score=170)">
      <seq>aacaaactttaccctgcttgttgttgagtgccgtttgtctctttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatggtcaagaggagccaaattctagtcaggaatggcttgtccgttggactatatcacagatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="70430" stop="75655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70730" g_stop="70806" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70979" g_stop="71024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="123" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72130" g_stop="72237" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="231" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72898" g_stop="73179" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="513" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74136" g_stop="74336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="714" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74842" g_stop="74922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="795" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75247" g_stop="75355" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="904" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U326611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70730" e_stop="70806"/>
          <exon e_start="70979" e_stop="71024"/>
          <exon e_start="72130" e_stop="72237"/>
          <exon e_start="72898" e_stop="73179"/>
          <exon e_start="74136" e_stop="74336"/>
          <exon e_start="74842" e_stop="74922"/>
          <exon e_start="75247" e_stop="75355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</genome_strand>
        <mrna_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327539" ref_strand="+" ref_description="SGN-U327539        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, very low similarity to SP:P12036 Neurofilament triplet H protein {Homo sapiens}; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr2:788707-790945 FORWARD | Aliases: T20F6.7, T20F6_7(evalue: 3e-26, score=115) genbank/nr: IQ(evalue: 3e-28, score=128)">
      <seq>tccgggaaaaaaaacatcaaaatgctgaagcagacattgctatgtcaaagcacagtgtaaggaaagtacattctaaaaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaatgaggatttttgtactaaccatgataataatgaaggaagtgagagcaacaaggttaacagaagagtttctttacctgcaaagcatgatgtcgatgcaagtacacccacaacaagaaaggtgcccagctacatggctccaaccaagtctgctaaagctaagctgaaggagcaagcctcaccaaggtttgggcaagatgtggctgagaagaatgccgtaaccagacgtcattctttaccgtcccctatgaatggaaagcttagttcatcaccatcaccacgggtgcagaggctggtccaagctagtgctaaagaaggaatcaagatcgacagatctttatcgtcttcaagggatggtactgataagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="75081" stop="76539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75381" g_stop="76231" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U327539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75381" e_stop="76231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGG-AAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</genome_strand>
        <mrna_strand>TCCGGGAAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTTAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="96966" stop="98214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97266" g_stop="97914" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97266" e_stop="97914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATAGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTACCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCTAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-dBMIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="97625" stop="99032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97925" g_stop="98732" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97925" e_stop="98732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCCTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2425" PGL_stop="3878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2425" e_stop="2661"/>
            <exon e_start="2736" e_stop="2839"/>
            <exon e_start="3548" e_stop="3878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="0.987"/>
          <exon-intron don_prob="0.710" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="2425" e_stop="2661" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="2662" i_stop="2735" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2736" e_stop="2839" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.710" acc_prob="0.991">
            <gDNA_intron_boundary i_start="2840" i_stop="3547" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3548" e_stop="3878" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2425" stop="2661"/>
              <exon start="2736" stop="2839"/>
              <exon start="3548" stop="3878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG : ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG : GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</gDNA_template>
            <first_frame> D  I  T  N  E  S  L  H  W  F  F  *  F  Y  G  E  S  E  Y  *  *  A  N  *  C  C  S  E  Q  *  L  G  I  S  K  S  S  T  G  R  E  K  S  F  S  I  S  F  I  *  *  E  S  H  S  H  T  *  C  A  S  K  W  R  F  R  L  Y  T  S  M  V  A  E  Q  S  S  L  G  :  M  C  A  R  S  I  Y  S  N  H  Q  T  *  S  T  S  P  D  G  W  Y  N  H  T  *  F  F  T  D  *  C  K  G  E  R :   C  D  I  C  S  *  A  F  S  E  D  Q  C  N  F  K  H  F  H  W  D  Y  L  R  *  L  F  T  V  F  R  R  R  K  W  T  E  R  Y  S  *  W  *  C  H  T  *  M  I  S  *  V  *  C  K  F  E  E  S  L  *  C  V  M  I  L  C  R  F  I  K  C  Q  R  *  E  W  I  M  *  R  D  C  D  C  T  L  L  *  M  M  L  C  S  I  *  S  T  N  *  G  E  N  *  K  A  N  D  K  D </first_frame>
            <second_frame>  T  S  P  M  S  P  F  I  G  S  S  D  F  T  E  R  V  S  I  D  K  Q  I  S  A  A  P  S  N  S  S  V  S  V  N  Q  V  P  E  G  K  N  L  S  Q  S  V  S  F  S  E  R  A  T  P  I  P  D  V  L  P  S  G  D  S  G  C  T  H  L  W  L  Q  S  R  V  P  L  G :   C  V  P  A  Q  S  T  A  T  I  K  L  E  V  L  P  L  T  D  G  I  I  T  L  D  S  L  Q  I  D  V  K  E  K   : G  V  T  Y  V  P  E  H  S  L  K  I  N  A  T  S  S  I  S  T  G  I  I  *  G  D  Y  L  Q  F  S  D  V  V  S  G  Q  K  D  T  H  S  G  S  V  I  R  R  *  Y  R  E  F  D  V  N  L  R  S  P  F  D  V  *  *  F  C  V  D  L  *  N  A  K  G  E  N  G  L  C  E  G  I  V  T  V  P  Y  C  R  *  C  Y  V  Q  F  E  V  P  T  R  G  K  I  E  K  Q  M  I  R   </second_frame>
            <third_frame>   H  H  Q  *  V  P  S  L  V  L  L  I  L  R  R  E  *  V  L  I  S  K  L  V  L  L  R  A  I  A  R  Y  Q  *  I  K  Y  R  K  G  K  I  F  L  N  Q  F  H  L  V  R  E  P  L  P  Y  L  M  C  F  Q  V  A  I  Q  V  V  H  I  Y  G  C  R  A  E  F  P  W   : D  V  C  P  L  N  L  Q  Q  P  S  N  L  K  Y  F  P  *  R  M  V  *  S  H  L  I  L  Y  R  L  M  *  R  R  K  :  V  *  H  M  F  L  S  I  L  *  R  S  M  Q  L  Q  A  F  P  L  G  L  S  E  V  T  I  Y  S  F  Q  T  S  *  V  D  R  K  I  L  I  V  V  V  S  Y  V  D  D  I  V  S  L  M  *  I  *  G  V  P  L  M  C  D  D  F  V  *  I  Y  K  M  P  K  V  R  M  D  Y  V  K  G  L  *  L  Y  L  I  V  D  D  V  M  F  N  L  K  Y  Q  L  G  G  K  L  K  S  K  *  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2426" stop="2661"/>
                    <exon start="2736" stop="2839"/>
                    <exon start="3548" stop="3618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPMSPFIGSSDFTERVSIDKQISAAPSNSSVSVNQVPEGKNLSQSVSFSERATPIPDVLPSGDSGCTHLWLQSRVPLGCVPAQSTATIKLEVLPLTDGIITLDSLQIDVKEKGVTYVPEHSLKINATSSISTGII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6994" PGL_stop="7647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6994" e_stop="7647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="6994" e_stop="7647" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6994" stop="7647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</gDNA_template>
            <first_frame> N  Y  S  K  H  K  P  Q  I  Q  F  F  L  K  K  K  H  I  P  N  G  L  F  Y  Y  *  L  F  F  M  E  I  H  V  L  N  S  H  I  I  S  C  S  W  L  C  F  F  S  E  N  I  V  D  D  E  F  K  R  *  R  R  L  Y  T  I  F  R  T  I  S  K  I  *  R  R  L  Y  T  I  F  R  I  I  S  E  I  L  R  *  K  *  K  E  R  V  S  K  E  *  F  V  S  Y  A  T  K  R  D  S  N  S  S  F  W  T  I  T  *  T  Q  W  R  W  *  L  I  *  L  S  L  K  V  N  *  L  L  N  N  K  E  *  L  C  Y  N  H  I  *  F  H  L  D  I  I  F  H  N  M  I  C  N  N  T  I  I  I  D  *  L  K  S  L  S  G  L  I  I  Y  S  Y  Y  K  N  *  E  G  Y  *  S  C  Y  L  Q  L  C  *  V  Y  M  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  M  K  I  Q  I </first_frame>
            <second_frame>  I  I  Q  N  I  N  P  R  F  N  F  F  *  K  K  N  I  F  L  M  A  Y  S  T  T  N  Y  S  S  W  K  F  M  Y  L  I  L  T  L  S  L  V  L  G  Y  A  S  S  V  R  I  S  S  T  M  N  S  K  D  E  D  A  Y  T  L  F  S  E  P  S  P  K  Y  E  D  A  Y  T  L  F  S  E  S  S  P  R  Y  Y  D  E  N  E  K  K  E  F  Q  K  S  N  L  F  H  M  L  P  K  G  T  L  I  P  P  S  G  P  S  R  R  H  N  G  D  G  D  L  S  N  Y  P  *  K  L  I  N  C  L  I  I  K  N  N  Y  V  I  I  I  Y  S  F  I  W  I  *  Y  F  I  T  *  Y  V  T  I  L  L  L  *  T  D  *  R  A  Y  L  V  *  L  Y  I  V  I  I  K  I  K  K  V  I  N  L  V  I  Y  N  Y  V  E  F  I  C  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  K  F  K   </second_frame>
            <third_frame>   L  F  K  T  *  T  P  D  S  I  F  F  K  K  K  T  Y  S  *  W  L  I  L  L  L  I  I  L  H  G  N  S  C  T  *  F  S  H  Y  L  L  F  L  A  M  L  L  Q  *  E  Y  R  R  R  *  I  Q  K  M  K  T  L  I  H  Y  F  Q  N  H  L  Q  N  M  K  T  L  I  H  Y  F  Q  N  H  L  R  D  I  T  M  K  M  K  R  K  S  F  K  R  V  I  C  F  I  C  Y  Q  K  G  L  *  F  L  L  L  D  H  H  V  D  T  M  E  M  V  T  Y  L  I  I  L  K  S  *  L  I  A  *  *  *  R  I  I  M  L  *  S  Y  I  V  S  F  G  Y  N  I  S  *  H  D  M  *  Q  Y  Y  Y  Y  R  L  I  E  E  P  I  W  F  N  Y  I  *  L  L  *  K  L  R  R  L  L  I  L  L  F  T  I  M  L  S  L  Y  A  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  E  N  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7034" stop="7387"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNIFLMAYSTTNYSSWKFMYLILTLSLVLGYASSVRISSTMNSKDEDAYTLFSEPSPKYEDAYTLFSESSPRYYDENEKKEFQKSNLFHMLPKGTLIPPSGPSRRHNGDGDLSNYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15359" PGL_stop="23144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15359" e_stop="15604"/>
            <exon e_start="17236" e_stop="17570"/>
            <exon e_start="17676" e_stop="17811"/>
            <exon e_start="19969" e_stop="20105"/>
            <exon e_start="20182" e_stop="20305"/>
            <exon e_start="20677" e_stop="21450"/>
            <exon e_start="22843" e_stop="22850"/>
            <exon e_start="23115" e_stop="23144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.959" e_score="0.993"/>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.567"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15359" e_stop="15604" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.938">
            <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17236" e_stop="17570" e_length="335"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17676" e_stop="17811" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="19969" e_stop="20105" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.664" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20182" e_stop="20305" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="20306" i_stop="20676" i_length="371"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20677" e_stop="21450" e_length="774"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21451" i_stop="22842" i_length="1392"/>
          </intron>
          <exon e_serial="7" e_score="0.625">
            <gDNA_exon_boundary e_start="22843" e_stop="22850" e_length="8"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22851" i_stop="23114" i_length="264"/>
          </intron>
          <exon e_serial="8" e_score="0.567">
            <gDNA_exon_boundary e_start="23115" e_stop="23144" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15359" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20105"/>
              <exon start="20182" stop="20305"/>
              <exon start="20677" stop="21450"/>
              <exon start="22843" stop="22850"/>
              <exon start="23115" stop="23144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG : AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG : GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA : GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG : GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG : GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA : ATAAATAT : AAACGAGATTTCAAAATCAACGGGTTCCCT</gDNA_template>
            <first_frame> G  G  G  V  V  G  G  V  F  M  I  F  E  F  D  F  R  Y  C  K  I  W  D  *  V  V  M  V  K  R  G  S  L  G  M  *  R  N  Q  R  G  R  R  R  K  R  L  L  K  R  K  L  D  V  G  L  S  C  G  L  L  V  A  V  S  L  Q  D  L  K  L  I  A  P  *  V  A  S  V  L  T  V  :  K  V  N  L  Q  M  T  Q  A  E  T  N  L  L  H  Q  L  S  H  L  R  L  P  A  M  R  K  V  I  H  P  P  P  N  L  K  R  S  L  K  F  L  L  G  F  E  N  S  H  L  T  I  *  S  W  Q  Q  E  T  S  D  Q  S  P  F  L  V  K  G  V  S  D  V  S  S  R  G  G  S  K  R  M  A  Q  H  L  L  N  Q  G  Q  G  L  L  L  L  *  K  L  *  I  M  M  D  F  R  V  T  K  N  G  W :   L  K  *  I  S  W  V  I  S  F  T  L  I  W  L  N  *  L  V  T  A  L  K  M  I  R  D  C  *  F  M  N  L  C  L  E  E  A  W  K  I  I  C  S  G  :  D  P  C  L  F  L  G  L  S  A  *  R  L  L  W  V  L  Q  K  V  L  L  F  F  T  R  K  Q  K  D  Q  *  Y  I  V  I  S  K  H  P  T  F  Y  *  T  R :   I  T  M  P  N  F  L  I  L  V  L  P  K  M  V  L  R  V  I  R  H  M  F  L  L  V  S  W  E  R  M  V  M  Q  P  L  S  M  *  *  Q  :  G  I  *  R  Q  R  V  T  S  T  V  L  G  *  F  Y  L  K  *  *  Q  V  G  D  R  W  T  R  T  D  Q  M  G  N  T  T  L  L  N  G  H  G  L  I  L  V  K  E  E  G  F  T  D  W  *  T  L  D  L  K  V  I  F  Q  *  K  V  L  R  K  L  H  S  W  L  L  V  A  L  V  V  I  P  K  L  G  L  *  *  V  K  W  *  K  P  *  S  H  Y  Q  I  L  K  T  W  P  A  H  P  T  I  S  R  Q  C  K  Q  T  E  L  D  Q  V  Q  V  P  K  M  A  L  G  H  R  D  H  S  R  G  M  D  N  N  I  L  E  V  F  Q  S  Q  M  V  L  M  L  L  H  T  I  N  S  F  L  R  T  H  Q  N  Q  T  A  K  L  S  I  I  G  L  T  S  N  L  F  L  S  F  F  S  F  S  L  Q  L  *  I  Y  F  V  G  H  L  P  F  C  R  W  M  N  W  Q  K  G  R  S  A  Q  L  T  *  V  V  I  F  E  N  A  E  L  P  L  E  K  N  V  L  *  A  E  L  K  S  M  E  *  I  L  C  R  M  Y  L  S  F  S  *  F  S  Q  :  I  N  I :   N  E  I  S  K  S  T  G  S   </first_frame>
            <second_frame>  E  V  G  L  L  V  G  F  S  *  Y  L  S  L  I  L  G  I  A  K  Y  G  I  R  W  *  W  *  K  G  G  V  L  G  C  R  E  I  K  G  E  E  E  E  R  G  C  *  R  G  N  W  M  L  D  *  V  V  V  Y  W  *  L  Y  L  F  K  I  *  S  *  *  L  H  K  W  H  Q  Y  S  L  * :   K  *  I  Y  K  *  H  K  Q  R  P  T  C  C  T  N  Y  L  I  Y  D  Y  Q  Q  C  G  K  *  F  I  H  L  Q  T  *  R  G  A  *  S  F  F  S  A  S  K  I  R  I  *  R  F  E  V  G  N  K  K  L  Q  T  R  V  P  S  W  *  R  G  F  R  M  C  L  Q  G  V  D  R  R  E  W  H  S  T  C  *  T  R  D  R  A  Y  C  C  C  E  N  S  K  S  *  W  T  S  G  S  Q  R  M  A   : G  *  S  E  F  P  G  *  S  R  S  P  *  F  G  *  T  D  W  L  L  H  *  R  *  S  E  T  V  S  L  *  I  Y  A  S  R  K  L  G  K  S  S  V  Q  E :   I  H  A  S  S  L  V  Y  P  H  E  D  C  S  G  C  C  K  R  S  C  F  S  S  R  G  S  R  K  T  S  N  I  S  *  F  Q  N  I  Q  H  S  T  R  R   : G  L  Q  C  Q  T  F  *  F  W  S  C  Q  R  W  S  *  G  *  *  D  T  C  F  Y  S  C  H  G  N  V  W  L  C  S  P  *  V  C  D  D  R :   A  S  N  V  K  E  *  R  L  Q  F  W  G  S  S  T  *  N  D  N  R  *  E  I  D  G  Q  E  P  T  K  W  G  T  Q  P  C  *  M  G  T  A  S  S  W  *  K  K  K  V  L  Q  I  G  R  P  *  T  *  R  S  F  F  N  K  R  C  S  E  S  C  T  V  G  C  S  L  P  *  S  *  S  Q  S  *  A  Y  D  E  *  S  G  R  S  L  E  A  I  T  K  S  *  R  H  G  Q  L  I  L  L  F  P  D  N  A  S  R  P  S  W  I  K  S  K  Y  Q  K  W  R  *  D  T  G  I  I  L  E  E  W  T  T  T  S  *  K  S  F  N  P  K  W  F  S  C  F  S  I  P  S  T  V  S  S  E  L  T  K  T  K  R  Q  N  L  V  L  L  D  *  Q  V  I  C  F  Y  H  S  F  R  F  L  S  S  Y  E  Y  I  L  L  A  T  S  R  F  V  V  G  *  T  G  K  R  E  G  V  H  N  *  L  K  L  *  S  L  K  M  L  N  S  H  L  K  R  M  Y  C  K  R  S  S  S  P  W  S  K  Y  C  V  E  C  T  S  P  S  A  D  F  R  K :   *  I   : *  T  R  F  Q  N  Q  R  V  P  </second_frame>
            <third_frame>   R  W  G  C  W  W  G  F  H  D  I  *  V  *  F  *  V  L  Q  N  M  G  L  G  G  D  G  E  K  G  E  S  W  D  V  E  K  S  K  G  K  K  K  K  E  V  V  E  E  E  T  G  C  W  T  K  L  W  F  I  G  S  C  I  S  S  R  S  K  V  D  S  S  I  S  G  I  S  T  H  C   : E  S  K  S  T  N  D  T  S  R  D  Q  P  V  A  P  I  I  S  S  T  T  T  S  N  A  E  S  N  S  S  T  S  K  L  E  E  E  L  K  V  S  S  R  L  R  K  F  A  F  N  D  L  K  L  A  T  R  N  F  R  P  E  S  L  L  G  E  G  G  F  G  C  V  F  K  G  W  I  E  E  N  G  T  A  P  V  K  P  G  T  G  L  T  V  A  V  K  T  L  N  H  D  G  L  Q  G  H  K  E  W  L  :  A  E  V  N  F  L  G  D  L  V  H  P  N  L  V  K  L  I  G  Y  C  I  E  D  D  Q  R  L  L  V  Y  E  F  M  P  R  G  S  L  E  N  H  L  F  R   : R  S  M  P  L  P  W  S  I  R  M  K  I  A  L  G  A  A  K  G  L  A  F  L  H  E  E  A  E  R  P  V  I  Y  R  D  F  K  T  S  N  I  L  L  D  A  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  D  G  P  E  G  D  K  T  H  V  S  T  R  V  M  G  T  Y  G  Y  A  A  P  E  Y  V  M  T   : G  H  L  T  S  K  S  D  V  Y  S  F  G  V  V  L  L  E  M  I  T  G  R  R  S  M  D  K  N  R  P  N  G  E  H  N  L  V  E  W  A  R  P  H  L  G  E  R  R  R  F  Y  R  L  V  D  P  R  L  E  G  H  F  S  I  K  G  A  Q  K  A  A  Q  L  A  A  R  C  L  S  R  D  P  K  V  R  P  M  M  S  E  V  V  E  A  L  K  P  L  P  N  L  K  D  M  A  S  S  S  Y  Y  F  Q  T  M  Q  A  D  R  V  G  S  S  P  S  T  K  N  G  V  R  T  Q  G  S  F  S  R  N  G  Q  Q  H  P  R  S  L  S  I  P  N  G  S  H  A  S  P  Y  H  Q  Q  F  P  Q  N  S  P  K  P  N  G  K  T  *  Y  Y  W  I  D  K  *  S  V  S  I  I  L  F  V  F  S  P  A  M  N  I  F  C  W  P  P  P  V  L  S  L  D  E  L  A  K  G  K  E  C  T  I  N  L  S  C  D  L  *  K  C  *  T  P  T  *  K  E  C  I  V  S  G  A  Q  V  H  G  V  N  I  V  S  N  V  P  L  L  Q  L  I  F  A   : N  K  Y  :  K  R  D  F  K  I  N  G  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15409" stop="15604"/>
                    <exon start="17236" stop="17570"/>
                    <exon start="17676" stop="17811"/>
                    <exon start="19969" stop="20105"/>
                    <exon start="20182" stop="20305"/>
                    <exon start="20677" stop="21197"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQNMGLGGDGEKGESWDVEKSKGKKKKEVVEEETGCWTKLWFIGSCISSRSKVDSSISGISTHCESKSTNDTSRDQPVAPIISSTTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLVDPRLEGHFSIKGAQKAAQLAARCLSRDPKVRPMMSEVVEALKPLPNLKDMASSSYYFQTMQADRVGSSPSTKNGVRTQGSFSRNGQQHPRSLSIPNGSHASPYHQQFPQNSPKPNGKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26504" PGL_stop="21979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26187"/>
            <exon e_start="25338" e_stop="25189"/>
            <exon e_start="25082" e_stop="24867"/>
            <exon e_start="24308" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="21979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26187" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25338" e_stop="25189" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25082" e_stop="24867" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24308" e_stop="24187" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="22371" e_stop="21979" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAA</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q   </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26187"/>
                    <exon start="25338" stop="25189"/>
                    <exon start="25082" stop="24867"/>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29957" PGL_stop="32397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29957" e_stop="30256"/>
            <exon e_start="30902" e_stop="31032"/>
            <exon e_start="31289" e_stop="31343"/>
            <exon e_start="31496" e_stop="31597"/>
            <exon e_start="31760" e_stop="31880"/>
            <exon e_start="32324" e_stop="32397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.963" e_score="0.980"/>
          <exon-intron don_prob="0.922" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.829" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.945" e_score="0.967"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="29957" e_stop="30256" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.963">
            <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="30902" e_stop="31032" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31289" e_stop="31343" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31496" e_stop="31597" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31598" i_stop="31759" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="31760" e_stop="31880" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.945">
            <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="32324" e_stop="32397" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29957" stop="30256"/>
              <exon start="30902" stop="31032"/>
              <exon start="31289" stop="31343"/>
              <exon start="31496" stop="31597"/>
              <exon start="31760" stop="31880"/>
              <exon start="32324" stop="32397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG : GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG : TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG : GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG : GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG : GATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</gDNA_template>
            <first_frame> *  F  S  G  E  I  Y  *  S  E  K  M  S  T  V  T  M  E  P  L  V  G  H  Y  L  R  R  S  P  K  L  Y  P  N  Q  K  K  T  S  H  F  S  L  N  F  S  R  R  P  L  S  G  T  A  T  L  R  F  C  D  Y  R  R  S  R  T  V  P  I  R  A  S  S  T  D  A  A  V  I  E  T  S  E  Q  S  D  V  V  F  K  E  T  F  S  L  K  R  P  E  R  :  A  E  G  K  I  S  I  R  L  D  K  G  K  D  E  E  N  W  N  L  T  V  G  C  S  L  P  G  K  W  I  L  H  W  G  V  H  Y  T  D  D  T  G  S :   E  W  D  Q  P  P  P  E  M  R  P  S  G  S  I  A  I  K  :  D  Y  A  I  E  T  P  L  Q  G  D  T  F  Q  E  V  K  I  D  I  S  S  K  W  S  I  A  A  I  N  F  V  L  K  :  D  E  E  T  G  V  W  Y  Q  H  R  G  R  D  F  K  I  P  L  V  D  C  L  D  N  D  A  N  I  V  G  V  K  K  E  S  N  I  W  S   : G  S  L  G  K  L  S  N  I  L  L  N  P  E  A  S  P  S  K  G  E  S  S  S  N </first_frame>
            <second_frame>  D  F  Q  V  R  S  T  D  R  K  K  C  R  Q  L  L  W  S  L  S  S  A  I  I  S  G  E  A  Q  S  Y  I  Q  I  R  R  K  P  L  I  F  L  *  I  S  L  G  G  H  S  P  V  P  Q  L  *  D  S  A  I  I  G  V  A  G  R  Y  L  S  E  L  A  P  P  M  L  P  S  L  R  R  R  N  S  R  T  *  F  L  R  R  L  S  R  *  N  D  R  K  G :   L  K  E  R  Y  P  S  D  W  I  R  G  R  M  K  R  I  G  T  S  L  W  D  V  V  C  Q  G  N  G  S  F  T  G  G  S  I  I  Q  M  T  L  A   : V  N  G  I  N  L  L  Q  R  C  G  R  Q  V  Q  L  P  *  R :   I  M  Q  L  K  L  L  C  K  E  T  H  F  K  R  *  R  S  T  *  V  L  S  G  L  *  Q  L  *  I  L  C  *  R :   M  R  K  L  E  F  G  I  S  T  E  G  G  T  S  R  F  L  L  L  T  A  L  T  M  M  L  I  S  L  V  L  K  R  S  R  T  Y  G  Q  :  D  H  *  E  S  C  P  T  Y  S  L  I  Q  K  L  L  L  L  K  G  N  Q  A  A   </second_frame>
            <third_frame>   I  F  R  *  D  L  L  I  G  K  N  V  D  S  Y  Y  G  A  S  R  R  P  L  S  P  A  K  P  K  A  I  S  K  S  E  E  N  L  S  F  F  S  K  F  L  S  E  A  T  L  R  Y  R  N  F  E  I  L  R  L  S  A  *  P  D  G  T  Y  Q  S  *  L  H  R  C  C  R  H  *  D  V  G  T  V  G  R  S  F  *  G  D  F  L  V  E  T  T  G  K   : G  *  R  K  D  I  H  Q  I  G  *  G  E  G  *  R  E  L  E  P  H  C  G  M  *  F  A  R  E  M  D  P  S  L  G  G  P  L  Y  R  *  H  W  Q  :  *  M  G  S  T  S  S  R  D  A  A  V  R  F  N  C  H  K   : G  L  C  N  *  N  S  F  A  R  R  H  I  S  R  G  E  D  R  H  K  F  *  V  V  Y  S  S  Y  K  F  C  V  E   : G  *  G  N  W  S  L  V  S  A  Q  R  A  G  L  Q  D  S  S  C  *  L  P  *  Q  *  C  *  Y  R  W  C  *  K  G  V  E  H  M  V  R :   I  T  R  K  A  V  Q  H  T  P  *  S  R  S  F  S  F  *  R  G  I  K  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29981" stop="30256"/>
                    <exon start="30902" stop="31032"/>
                    <exon start="31289" stop="31343"/>
                    <exon start="31496" stop="31597"/>
                    <exon start="31760" stop="31880"/>
                    <exon start="32324" stop="32397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKMSTVTMEPLVGHYLRRSPKLYPNQKKTSHFSLNFSRRPLSGTATLRFCDYRRSRTVPIRASSTDAAVIETSEQSDVVFKETFSLKRPERAEGKISIRLDKGKDEENWNLTVGCSLPGKWILHWGVHYTDDTGSEWDQPPPEMRPSGSIAIKDYAIETPLQGDTFQEVKIDISSKWSIAAINFVLKDEETGVWYQHRGRDFKIPLVDCLDNDANIVGVKKESNIWSGSLGKLSNILLNPEASPSKGESSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35852" PGL_stop="42082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35852" e_stop="36251"/>
            <exon e_start="36892" e_stop="37081"/>
            <exon e_start="38724" e_stop="38830"/>
            <exon e_start="39780" e_stop="40029"/>
            <exon e_start="40152" e_stop="40274"/>
            <exon e_start="41244" e_stop="41411"/>
            <exon e_start="41499" e_stop="42082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.856" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35852" e_stop="36251" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36892" e_stop="37081" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38724" e_stop="38830" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39780" e_stop="40029" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40152" e_stop="40274" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41244" e_stop="41411" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.828" acc_prob="0.856">
            <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="41499" e_stop="42082" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35852" stop="36251"/>
              <exon start="36892" stop="37081"/>
              <exon start="38724" stop="38830"/>
              <exon start="39780" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="42082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35912" stop="36249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG : ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG : GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG : GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT : GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG : GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG : GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATT</gDNA_template>
            <first_frame> R  *  G  V  W  *  V  T  F  L  L  K  R  A  E  R  Q  K  I  G  K  H  R  K  P  F  F  K  K  L  R  S  W  L  L  K  L  M  V  Y  S  E  V  Q  S  Q  Q  Y  *  K  L  L  F  L  T  L  R  L  Y  N  L  T  *  K  *  L  Q  E  L  V  Q  D  L  K  F  C  A  R  V  L  I  G  N  L  I  N  P  E  D  G  T  R  S  C  M  I  K  L  Q  S  Y  L  H  L  V  S  V  *  S  G  Y  L  H  Q  L  T  Q  C  H  Q  R  D  T  C  L  G  I  Y  I  T  *  I  P   : D  M  V  V  L  M  N  *  K  L  Q  *  R  N  S  M  K  W  A  S  R  F  L  V  M  L  S  *  I  I  D  V  Q  V  N  G  I  K  M  V  Y  G  I  S  L  V  V  G  *  I  G  M  S  V  Q  L  L  Q  M  I  H  I  S  R :   E  G  A  T  K  V  V  E  I  I  S  M  L  L  L  T  L  I  I  P  R  N  S  *  E  R  I  S  G  N  G  Y  S  G  *   : G  R  R  L  V  M  M  D  G  G  L  I  L  F  V  G  F  G  V  V  M  *  R  I  T  W  K  Q  L  N  L  T  S  L  *  A  S  F  G  I  P  S  F  I  L  M  E  R  W  I  T  I  K  M  R  I  G  R  E  L  L  T  G  L  M  L  L  M  E  L  Q  E  H  L  T  *  Q  R  R  E  F  F  I  L :   Q  L  R  D  V  N  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R :   V  I  G  D  F  L  V  G  K  R  C  K  V  M  P  I  S  *  L  T  L  E  P  R  Q  S  S  L  I  T  F  S  L  V  T  D  L  K  *  E  I  L  Y  H  S  E  S  G  T  R  L  T  V  G  V  W :   W  I  S  Q  K  P  K  G  M  F  T  Q  Q  L  L  T  I  S  W  L  S  K  *  D  Q  A  T  T  S  L  Q  V  G  I  R  D  G  K  R  L  L  R  V  T  I  I  R  F  G  N  C  H  E  N  N  R  L  L  S  L  L  P  I  F  C  Y  L  *  M  L  G  V  S  I  E  *  L  E  M  E  T  V  N  V  V  K  K  L  Y  C  S  G  L  Y  L  A  L  L  Q  H  K  L  K  L  L  E  L  K  *  Q  E  Y  E  Q  S  G  N  N  C  C  *  Y  C  C  I  W  K  N  S  P  C  T  L  Y  I  V  W  *  K  L  Y  M  I  G  T  N  H  Y  I  I  L  P  F  Q  K  I  N  R  H  C  R  N  C  M  M  *  R  T  S  V  Q  L  I  R  H  I  G  D  K  T  P  F  *  R  I  N  T  K  M  Y  V  L  L  Y  </first_frame>
            <second_frame>  D  K  E  F  G  E  *  H  F  F  *  K  E  P  K  D  K  K  *  G  N  T  G  N  H  S  S  R  N  *  E  A  G  C  *  S  L  W  Y  I  Q  K  F  N  P  N  N  T  R  N  C  C  F  *  L  *  G  C  T  T  *  R  E  S  N  F  R  N  W  Y  R  I  *  N  F  V  P  G  F  *  L  G  I  S  *  I  R  K  M  V  Q  G  A  A  *  *  S  C  R  V  I  F  T  W  F  Q  C  D  L  V  T  S  T  N  *  L  S  V  T  R  G  I  H  A  *  G  F  I  *  L  K  F  Q  :  I  W  *  F  *  *  I  E  S  Y  S  K  E  I  P  *  S  G  H  Q  G  S  W  *  C  C  L  K  S  *  M  C  K  *  T  E  S  K  W  Y  M  E  Y  L  W  W  S  V  K  L  G  *  A  C  S  C  C  R  *  S  T  F  P   : G  K  G  Q  Q  K  *  W  R  *  F  P  C  C  S  *  H  *  S  F  P  G  I  R  E  K  G  Y  Q  G  M  V  T  L  A  E  :  G  G  D  W  L  *  W  M  E  A  *  F  C  S  W  V  L  G  W  L  C  E  G  L  L  G  S  N  *  T  L  L  R  C  R  R  V  L  G  F  P  R  L  Y  L  W  R  D  G  S  Q  S  R  C  A  *  A  E  N  Y  *  L  D  *  C  Y  *  W  N  C  R  S  I  *  R  D  N  E  G  N  S  S  F   : C  N  *  E  M  *  I  L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T   : G  S  L  E  I  S  W  W  E  R  D  A  R  L  C  L  Y  P  D  S  P  W  N  P  V  S  L  L  *  S  H  F  L  W  L  P  I  *  N  R  K  S  Y  I  T  Q  K  A  E  Q  D  *  L  S  E  F   : G  G  Y  H  K  S  R  K  G  C  L  R  S  S  Y  *  R  *  A  G  C  Q  N  R  T  R  P  L  R  A  S  K  W  A  S  E  M  E  N  G  C  *  G  *  Q  L  *  G  L  G  I  V  M  K  T  I  A  F  F  P  C  Y  R  Y  S  A  I  C  K  C  L  G  L  A  L  S  D  W  R  W  K  Q  *  M  S  *  K  S  C  T  A  A  D  C  I  *  L  C  C  N  T  N  *  S  C  W  S  *  N  S  K  S  M  N  S  L  V  I  I  A  V  N  I  V  V  F  G  K  I  H  H  V  H  Y  T  *  S  G  K  N  C  I  *  *  V  P  T  T  T  L  Y  C  L  F  R  R  *  I  G  I  V  E  T  V  *  C  K  E  L  L  Y  N  L  F  A  I  L  A  I  R  R  L  F  S  V  *  I  L  K  C  M  Y  C  C  I </second_frame>
            <third_frame>   I  R  S  L  V  S  D  I  S  S  E  K  S  R  K  T  K  N  R  E  T  Q  E  T  I  L  Q  E  I  E  K  L  A  A  E  A  Y  G  I  F  R  S  S  I  P  T  I  L  E  T  V  V  S  D  S  E  V  V  Q  P  D  V  K  V  T  S  G  T  G  T  G  F  E  I  L  C  Q  G  F  N  W  E  S  H  K  S  G  R  W  Y  K  E  L  H  D  K  A  A  E  L  S  S  L  G  F  S  V  I  W  L  P  P  P  T  D  S  V  S  P  E  G  Y  M  P  R  D  L  Y  N  L  N  S  R :   Y  G  S  F  D  E  L  K  V  T  V  K  K  F  H  E  V  G  I  K  V  L  G  D  V  V  L  N  H  R  C  A  S  E  R  N  Q  N  G  I  W  N  I  F  G  G  R  L  N  W  D  E  R  A  V  V  A  D  D  P  H  F  Q  :  G  R  G  N  K  S  S  G  D  N  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  K  D  I  R  E  W  L  L  W  L  R :   E  E  I  G  Y  D  G  W  R  L  D  F  V  R  G  F  W  G  G  Y  V  K  D  Y  L  E  A  T  E  P  Y  F  A  V  G  E  F  W  D  S  L  V  Y  T  Y  G  E  M  D  H  N  Q  D  A  H  R  Q  R  I  I  D  W  I  N  A  T  N  G  T  A  G  A  F  D  V  T  T  K  G  I  L  H  S  :  A  I  E  R  C  E  Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  :  G  H  W  R  F  P  G  G  K  E  M  Q  G  Y  A  Y  I  L  T  H  P  G  T  P  S  V  F  F  D  H  I  F  S  G  Y  R  S  E  I  G  N  L  I  S  L  R  K  R  N  K  I  N  C  R  S  L  :  V  D  I  T  K  A  E  R  D  V  Y  A  A  V  I  D  D  K  L  A  V  K  I  G  P  G  H  Y  E  P  P  S  G  H  Q  R  W  K  T  A  A  E  G  N  N  Y  K  V  W  E  L  S  *  K  Q  S  P  S  F  P  V  T  D  I  L  L  F  V  N  A  W  G  *  H  *  V  T  G  D  G  N  S  E  C  R  K  K  A  V  L  Q  R  I  V  S  S  F  A  A  T  Q  I  E  V  V  G  A  K  I  A  R  V  *  T  V  W  *  *  L  L  L  I  L  L  Y  L  E  K  F  T  M  Y  T  I  H  S  L  V  K  T  V  Y  D  R  Y  Q  P  L  H  Y  I  A  F  S  E  D  K  *  A  L  *  K  L  Y  D  V  K  N  F  C  T  T  Y  S  P  Y  W  R  *  D  A  F  L  A  Y  K  Y  *  N  V  C  I  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35854" stop="36251"/>
                    <exon start="36892" stop="37081"/>
                    <exon start="38724" stop="38830"/>
                    <exon start="39780" stop="40029"/>
                    <exon start="40152" stop="40274"/>
                    <exon start="41244" stop="41411"/>
                    <exon start="41499" stop="41657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSLVSDISSEKSRKTKNRETQETILQEIEKLAAEAYGIFRSSIPTILETVVSDSEVVQPDVKVTSGTGTGFEILCQGFNWESHKSGRWYKELHDKAAELSSLGFSVIWLPPPTDSVSPEGYMPRDLYNLNSRYGSFDELKVTVKKFHEVGIKVLGDVVLNHRCASERNQNGIWNIFGGRLNWDERAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIREWLLWLREEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEFWDSLVYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSAIERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYILTHPGTPSVFFDHIFSGYRSEIGNLISLRKRNKINCRSLVDITKAERDVYAAVIDDKLAVKIGPGHYEPPSGHQRWKTAAEGNNYKVWELS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40170" e_stop="40826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40170" e_stop="40826" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</gDNA_template>
            <first_frame> Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  V  K  Y  A  L  *  L  S  E  D  *  R  S  S  S  F  N  L  D  Q  *  *  K  V  F  F  M  R  R  Q  I  V  Q  H  I  H  W  P  E  P  T  I  P  F  L  I  I  Q  L  I  Y  H  L  F  P  A  *  V  W  L  D  C  S  S  V  R  A  K  C  T  L  N  P  G  S  C  L  *  M  L  F  T  V  R  Y  H  D  E  M  *  T  L  *  L  L  Y  *  L  *  C  I  A  V  T  T  I  R  K  N  S  S  P  W  K  S  V  K  K  Q  N  P  S  P  A  *  S  S  T  L  I  L  F  G  F  F  A  L  D  V  P  *  F  A  C  Q  Y  L  N  W  Q  K  F  *  Q  T  Q  G  C  K  I  L  Q  R  I  Y  F  F  G  T  E  R  L  S  *  V  P  F  G  L  N  L  K  S  M </first_frame>
            <second_frame>  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R  *  N  M  L  F  S  Y  Q  R  T  R  E  A  P  L  L  I  L  I  N  D  K  R  F  F  L  *  G  G  R  *  F  S  I  S  T  G  R  N  Q  L  Y  L  S  *  S  F  N  *  F  T  T  F  F  L  L  K  C  G  W  I  A  Q  A  *  E  L  N  V  L  *  I  L  A  A  A  Y  K  C  Y  L  Q  L  D  I  M  M  K  C  K  P  C  S  F  S  I  D  S  S  A  *  L  *  P  P  L  G  R  I  V  P  L  G  N  Q  L  R  N  K  I  L  V  Q  P  S  H  Q  L  *  F  C  L  V  S  L  L  L  M  F  H  N  L  L  V  N  I  *  I  G  K  S  S  S  K  H  K  A  V  K  F  F  S  V  F  I  F  L  V  Q  N  V  S  L  R  F  H  L  D  S  T  *  N  Q   </second_frame>
            <third_frame>   L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T  G  K  I  C  S  L  V  I  R  G  L  E  K  L  L  F  *  S  *  S  M  I  K  G  F  F  Y  E  E  A  D  S  S  A  Y  P  L  A  G  T  N  Y  T  F  L  D  H  S  I  N  L  P  P  F  S  C  L  S  V  V  G  L  L  K  R  E  S  *  M  Y  F  E  S  W  Q  L  P  I  N  A  I  Y  S  *  I  S  *  *  N  V  N  P  V  A  S  L  L  T  L  V  H  S  C  D  H  H  *  E  E  *  F  P  L  E  I  S  *  E  T  K  S  *  S  S  L  V  I  N  F  D  F  V  W  F  L  C  S  *  C  S  I  I  C  L  S  I  S  K  L  A  K  V  L  A  N  T  R  L  *  N  S  S  A  Y  L  F  F  W  Y  R  T  S  L  L  G  S  I  W  T  Q  L  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0058L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42806" PGL_stop="43978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42806" e_stop="43136"/>
            <exon e_start="43730" e_stop="43978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.915"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="42806" e_stop="43136" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="43730" e_stop="43978" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42806" stop="43136"/>
              <exon start="43730" stop="43978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACAAAAAAAAGGAGAAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA : AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</gDNA_template>
            <first_frame> L  I  K  S  K  T  T  K  S  W  V  F  P  P  K  A  A  G  G  S  R  K  K  K  D  K  Q  K  Q  K  K  G  E  K  K  N  I  C  Y  K  K  K  W  P  L  L  V  L  I  I  Q  L  F  F  C  F  P  F  S  V  F  L  L  *  S  Q  N  Y  M  L  I  L  L  I  L  I  L  I  W  K  K  E  L  K  K  P  S  N  L  L  L  L  L  I  M  K  I  L  R  V  S  L  K  F  S  T  K  K  L  E   : K  H  F  S  M  A  Q  G  G  I  *  R  K  K  I  K  R  T  R  M  T  R  M  I  R  K  V  M  K  K  V  L  M  V  A  R  H  T  I  Q  L  T  N  V  G  D  V  T  K  T  G  L  I  T  G  R  H  *  Q  T  V  L  G  D  L  V  M  V  Q  L  V  V  K  M  V  D  S  M  L  S  P  I  H  </first_frame>
            <second_frame>  *  *  N  Q  K  L  P  N  L  G  F  F  P  P  R  L  Q  V  V  A  E  K  K  K  T  N  K  N  K  K  K  E  K  K  K  I  S  A  T  K  K  N  G  L  Y  *  F  *  *  F  S  Y  F  S  V  F  P  F  L  F  F  F  Y  N  P  K  I  I  C  *  Y  C  *  F  *  S  L  F  G  K  K  S  *  R  S  P  P  I  F  S  C  C  L  *  *  K  S  *  G  C  H  S  N  F  Q  Q  R  S  W  R  :  N  T  S  Q  W  H  K  E  A  F  E  G  K  R  *  R  G  Q  E  *  Q  G  *  *  G  R  *  *  K  K  C  *  W  L  Q  G  I  Q  S  N  *  Q  M  L  E  M  *  Q  K  L  G  *  *  Q  E  G  T  S  R  L  C  *  G  I  W  S  W  Y  N  W  W  *  R  W  *  I  L  C  C  H  R  S  I </second_frame>
            <third_frame>   N  K  I  K  N  Y  Q  I  L  G  F  S  P  Q  G  C  R  W  *  Q  K  K  K  R  Q  T  K  T  K  K  R  R  K  K  K  Y  L  L  Q  K  K  M  A  S  I  S  F  N  N  S  V  I  F  L  F  S  L  F  C  F  S  S  I  I  P  K  L  Y  A  N  I  A  D  F  D  P  Y  L  E  K  R  A  E  E  A  L  Q  S  S  L  A  A  Y  N  E  N  P  E  G  V  T  Q  I  F  N  K  E  V  G  E :   T  L  L  N  G  T  R  R  H  L  K  E  K  D  K  E  D  K  N  D  K  D  D  K  E  G  D  E  K  S  V  D  G  C  K  A  Y  N  P  I  D  K  C  W  R  C  D  K  N  W  A  N  N  R  K  A  L  A  D  C  A  R  G  F  G  H  G  T  T  G  G  K  D  G  R  F  Y  V  V  T  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42865" stop="43136"/>
                    <exon start="43730" stop="43976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRQTKTKKRRKKKYLLQKKMASISFNNSVIFLFSLFCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPEGVTQIFNKEVGETLLNGTRRHLKEKDKEDKNDKDDKEGDEKSVDGCKAYNPIDKCWRCDKNWANNRKALADCARGFGHGTTGGKDGRFYVVTDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44040" PGL_stop="45777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44040" e_stop="44426"/>
            <exon e_start="44528" e_stop="44770"/>
            <exon e_start="45215" e_stop="45777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.542" e_score="0.988"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="44040" e_stop="44426" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="44528" e_stop="44770" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="45215" e_stop="45777" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44040" stop="44426"/>
              <exon start="44528" stop="44770"/>
              <exon start="45215" stop="45777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC : GTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG : GTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCATTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTCTCTGGAGCTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCTAATAAATGTAATTTTCCCTGTTTGAATTTCA</gDNA_template>
            <first_frame> P  L  W  I  I  F  E  K  S  M  I  I  R  L  K  Q  E  L  M  I  N  S  N  K  T  I  D  G  R  G  V  S  V  H  V  A  Y  G  G  G  L  T  L  Q  F  V  H  N  V  I  V  H  N  I  R  V  H  H  I  L  S  K  N  G  G  M  I  R  D  S  V  K  H  I  G  L  R  T  V  S  D  G  D  A  I  S  L  F  G  A  N  R  I  W  I  D  H  C  T  L  T  K  G  A  D  G  L  L  D  A  I  M  A  S  T  A  I  T  I  S  N  C  K  F  N  H  H  N  D  :  V  M  L  L  G  A  N  D  A  F  P  Q  D  K  I  M  Q  V  T  V  A  F  N  R  F  G  K  G  C  I  Q  R  M  P  R  C  R  W  G  F  F  H  V  V  N  N  D  Y  A  K  W  E  M  Y  A  I  G  G  T  A  N  P  T  I  I  S  Q  G  N  R  F  K  A  A  D  N  P  N  T  K  E  :  V  T  N  R  N  G  A  P  E  A  L  W  R  N  W  Q  W  R  S  E  G  D  L  F  K  N  G  A  F  F  R  E  S  G  P  E  I  K  S  T  P  F  T  E  H  T  T  I  Q  F  E  P  A  K  F  V  G  R  L  T  R  K  A  G  V  I  Q  C  K  I  G  K  A  C  *  A  C  Y  M  Y  N  V  I  L  I  I  I  H  K  T  Y  C  T  F  H  F  G  V  Y  M  E  P  N  I  F  F  L  G  G  F  F  Y  S  K  R  R  R  K  R  L  R  H  L  S  V  F  S  V  F  F  R  L  L  L  S  F  F  F  L  A  G  L  L  Y  R  *  S  S  E  D  G  E  E  N  E  K  S  G  F  S  G  A  Q  V  Y  L  F  V  T  E  V  L  V  F  T  I  F  *  *  M  *  F  S  L  F  E  F   </first_frame>
            <second_frame>  H  C  G  S  S  S  R  S  R  *  S  S  G  *  N  K  N  L  *  S  T  V  I  R  Q  L  M  A  E  V  C  L  F  M  L  H  M  E  V  D  L  P  Y  N  L  C  T  M  *  L  S  T  T  L  E  F  I  T  S  F  L  R  M  V  V  *  L  E  I  L  L  N  I  L  V  L  G  Q  *  V  M  V  M  L  F  P  F  S  V  L  T  V  S  G  *  I  I  V  L  *  P  R  V  L  M  D  S  S  M  Q  S  W  L  P  L  L  S  P  F  L  T  A  N  S  T  I  T  T  T :   L  C  F  W  E  Q  T  M  P  S  H  K  I  K  S  C  K  L  Q  L  H  S  I  G  S  E  R  D  V  F  K  G  C  Q  G  A  G  G  D  S  S  T  L  S  T  T  T  T  P  N  G  K  C  M  L  L  V  A  Q  L  T  P  P  S  L  A  R  V  T  V  S  R  L  P  T  I  P  T  L  K  R :   *  Q  T  G  M  V  P  Q  K  L  C  G  E  T  G  N  G  D  P  R  V  I  C  S  R  T  E  P  S  L  G  S  L  D  Q  K  S  R  A  L  H  S  Q  N  I  P  Q  S  N  L  S  L  L  N  L  *  V  D  S  L  A  R  L  V  *  S  S  A  R  L  E  K  H  A  R  H  V  I  C  T  M  *  Y  *  L  *  Y  I  K  H  I  V  H  F  I  L  G  F  T  W  S  R  I  F  F  F  W  G  G  S  F  T  A  R  E  E  E  N  G  *  D  I  Y  L  F  S  Q  F  F  S  D  Y  C  F  L  S  S  S  *  L  V  Y  S  I  G  E  A  V  K  M  G  K  K  T  K  K  V  G  S  L  E  L  K  F  I  F  L  *  Q  K  F  W  F  L  R  F  S  N  K  C  N  F  P  C  L  N  F  </second_frame>
            <third_frame>   I  V  D  H  L  R  E  V  D  D  H  Q  V  E  T  R  T  Y  D  Q  Q  *  *  D  N  *  W  Q  R  C  V  C  S  C  C  I  W  R  W  T  Y  L  T  I  C  A  Q  C  D  C  P  Q  H  *  S  S  S  H  P  F  *  E  W  W  Y  D  *  R  F  C  *  T  Y  W  S  *  D  S  E  *  W  *  C  Y  F  P  F  R  C  *  P  Y  L  D  R  S  L  Y  F  N  Q  G  C  *  W  T  P  R  C  N  H  G  F  H  C  Y  H  H  F  *  L  Q  I  Q  P  S  Q  R   : R  Y  A  F  G  S  K  R  C  L  P  T  R  *  N  H  A  S  Y  S  C  I  Q  *  V  R  K  G  M  Y  S  K  D  A  K  V  Q  V  G  I  L  P  R  C  Q  Q  R  L  R  Q  M  G  N  V  C  Y  W  W  H  S  *  P  H  H  H  *  P  G  *  P  F  Q  G  C  R  Q  S  Q  H  *  R   : G  D  K  P  E  W  C  P  R  S  F  V  E  K  L  A  M  E  I  R  G  *  F  V  Q  E  R  S  L  L  *  G  V  W  T  R  N  Q  E  H  S  I  H  R  T  Y  H  N  P  I  *  A  C  *  I  C  R  *  T  H  S  Q  G  W  C  N  P  V  Q  D  W  K  S  M  L  G  M  L  Y  V  Q  C  N  I  N  Y  N  T  *  N  I  L  Y  I  S  F  W  G  L  H  G  A  E  Y  F  F  F  G  G  V  L  L  Q  Q  E  K  K  K  T  A  K  T  S  I  C  F  L  S  F  F  P  T  I  A  F  F  L  L  P  S  W  F  T  L  *  V  K  Q  *  R  W  G  R  K  R  K  K  W  V  L  W  S  S  S  L  S  F  C  N  R  S  F  G  F  Y  D  F  L  I  N  V  I  F  P  V  *  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44040" stop="44426"/>
                    <exon start="44528" stop="44770"/>
                    <exon start="45215" stop="45439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLWIIFEKSMIIRLKQELMINSNKTIDGRGVSVHVAYGGGLTLQFVHNVIVHNIRVHHILSKNGGMIRDSVKHIGLRTVSDGDAISLFGANRIWIDHCTLTKGADGLLDAIMASTAITISNCKFNHHNDVMLLGANDAFPQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAIGGTANPTIISQGNRFKAADNPNTKEVTNRNGAPEALWRNWQWRSEGDLFKNGAFFRESGPEIKSTPFTEHTTIQFEPAKFVGRLTRKAGVIQCKIGKAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45440" stop="45652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACYMYNVILIIIHKTYCTFHFGVYMEPNIFFLGGFFYSKRRRKRLRHLSVFSVFFRLLLSFFFLAGLLYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="49839" PGL_stop="46004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49839" e_stop="49598"/>
            <exon e_start="49201" e_stop="49146"/>
            <exon e_start="48341" e_stop="48179"/>
            <exon e_start="48063" e_stop="47975"/>
            <exon e_start="47645" e_stop="47513"/>
            <exon e_start="47340" e_stop="47234"/>
            <exon e_start="47141" e_stop="47039"/>
            <exon e_start="46594" e_stop="46004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49839" e_stop="49598" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49201" e_stop="49146" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.814">
            <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48341" e_stop="48179" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.740">
            <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48063" e_stop="47975" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47645" e_stop="47513" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.888">
            <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47340" e_stop="47234" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.712">
            <gDNA_intron_boundary i_start="47233" i_stop="47142" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47141" e_stop="47039" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47038" i_stop="46595" i_length="444"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="46594" e_stop="46004" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49839" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47513"/>
              <exon start="47340" stop="47265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47273" stop="47234"/>
              <exon start="47141" stop="47039"/>
              <exon start="46594" stop="46004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG : GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG : GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG : GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG : TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA : TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG : AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG : GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</gDNA_template>
            <first_frame> K  N  I  K  K  K  I  K  S  P  F  *  V  T  S  S  I  *  R  N  S  H  V  Q  C  Q  Q  Q  Y  G  H  Q  C  C  L  N  G  D  I  V  T  R  I  C  I  I  G  Y  Y  H  L  Q  K  L  N  L  A  S  F  I  Y  L  F  Y  L  L  S  L  I  I  M  I  L  Y  H  P  S  N  K  I  R :   L  C  M  T  L  Q  R  S  F  L  D  L  M  L  I  C  S  Q   : G  R  S  F  L  V  H  R  V  R  D  H  G  L  A  Q  M  D  S  I  *  E  N  C  L  V  Q  A  A  E  E  E  A  T  L  H  V  L  N  V  E  S  R  D  P  T  *  I  V  R  C  V  M  E  R :   V  *  *  L  V  I  S  V  V  E  I  V  S  F  G  K  S  L  S  M  N  G  L  G  R  K  L  D  Q   : V  H  L  *  K  *  K  K  T  M  K  W  T  T  *  T  *  S  L  T  R  R  E  K  P  S  V  S  T  N  L  P  T  Q  K  S  I  *  R  S  A  D  H  *  N :   W  M  I  A  E  P  K  C  Q  N  W  I  I  *  *  K  D  E  D  Y  P  W  R  S  D  A  S  C  T  K  S  S  C  Y  *   : E  S  K  G  D  T  C  R  *  E  T  C  L  R  I  H  E  K  L  L  P  *  S  R  *  P  P  Q  E  K  H  I  H  E  R :   G  E  I  L  L  *  K  L  W  T  G  R  T  *  E  *  L  L  S  R  N  S  R  Q  Y  G  *  T  L  *  M  W  I  M  W  N  K  G  S  *  Q  K  N  L  L  K  V  E  L  N  C  T  E  K  D  S  *  G  *  S  S  L  Q  Q  V  S  K  K  W  P  *  Q  K  N  M  P  P  K  E  *  I  R  H  *  S  G  C  N  N  Q  D  S  S  K  E  N  L  *  L  Q  R  V  L  R  K  R  T  Q  R  Q  D  M  S  S  *  K  Q  L  Q  K  Q  I  V  I  C  K  E  I  P  *  C  F  D  F  V  F  I  S  R  L  M  H  Y  S  G  F  S  S  S  V  L  V  H  V  I  D  L  P  F  N  S  D  I  S  S  F  *  M  F  V  R  L  K  T  L  D  Q  F  A  L  R  L  W  K  N  L  S  *  I  *  N  C  Y  K  Y  H   </first_frame>
            <second_frame>  K  T  S  K  R  K  *  N  L  H  F  K  S  L  L  Q  F  E  E  I  L  M  Y  N  V  N  N  N  M  V  I  N  V  A  S  M  E  I  L  *  Q  E  F  A  L  L  D  I  T  T  F  K  N  *  T  *  L  L  L  F  T  Y  F  I  F  F  H  *  *  *  *  F  C  I  T  H  Q  T  K  S   : G  Y  V  *  P  F  R  G  A  F  W  T  *  C  *  F  A  A  K  :  E  G  H  F  *  F  I  E  S  E  I  M  V  W  P  K  W  T  V  Y  K  R  T  A  L  S  K  L  Q  R  K  R  L  H  F  M  Y  *  M  W  N  R  E  I  Q  L  R  L  F  V  V  *  W  K   : G  Y  D  N  L  S  S  V  W  W  R  L  C  H  L  G  R  V  Y  R  *  T  A  L  G  E  S  S  I  K  :  F  T  F  K  S  K  R  R  R  *  S  G  R  L  R  H  K  A  *  R  E  E  K  N  Q  A  C  L  P  I  S  Q  H  R  S  Q  F  E  D  Q  Q  I  T  K   : I  G  *  L  Q  S  L  N  A  K  T  G  L  F  S  K  R  M  K  I  I  H  G  D  P  M  L  H  A  Q  R  V  A  A  I  K  :  K  A  K  G  T  P  A  A  R  K  R  A  S  E  S  M  K  S  Y  F  R  D  P  D  N  R  R  K  R  S  I  S  M  K   : G  V  K  F  Y  C  R  N  C  G  Q  E  G  H  R  S  N  Y  C  P  E  I  R  D  N  T  D  R  H  Y  R  C  G  L  C  G  T  K  G  H  N  R  R  T  C  L  K  L  S  L  I  V  P  K  K  T  V  K  V  N  H  H  C  S  K  C  Q  R  S  G  H  N  R  R  T  C  H  Q  K  N  E  F  D  T  K  V  V  A  T  I  K  T  R  V  K  R  T  Y  S  C  S  V  C  L  G  K  G  H  N  A  R  T  C  L  H  K  S  N  S  K  S  R  *  L  F  V  R  K  S  L  D  V  S  T  L  F  S  Y  L  V  *  C  I  I  L  V  F  P  L  L  C  L  Y  M  *  S  I  S  H  S  I  L  I  F  L  R  F  K  C  L  F  D  *  K  L  W  I  N  L  L  *  G  C  G  K  I  C  L  E  Y  K  T  V  I  N  I  I  </second_frame>
            <third_frame>   K  H  Q  K  E  N  K  I  S  I  L  S  H  F  F  N  L  K  K  F  S  C  T  M  S  T  T  I  W  S  S  M  L  P  Q  W  R  Y  C  N  K  N  L  H  Y  W  I  L  P  P  S  K  T  K  L  S  F  F  Y  L  P  I  L  S  S  F  T  N  N  N  D  S  V  S  P  I  K  Q  N  Q  :  A  M  Y  D  P  S  E  E  L  F  G  L  D  A  D  L  Q  P  R :   K  V  I  S  S  S  S  S  P  R  S  W  F  G  P  N  G  Q  Y  I  R  E  L  P  C  P  S  C  R  G  R  G  Y  T  S  C  T  E  C  G  I  E  R  S  N  L  D  C  S  L  C  N  G  K  :  G  M  I  T  C  H  Q  C  G  G  D  C  V  I  W  E  E  S  I  D  E  R  P  W  E  K  A  R  S  S :   S  P  L  K  V  K  E  D  D  E  V  D  D  L  D  I  K  L  D  A  K  R  K  T  K  R  V  Y  Q  S  P  N  T  E  V  N  L  K  I  S  R  S  L  K  :  L  D  D  C  R  A  *  M  P  K  L  D  Y  L  V  K  G  *  R  L  S  M  A  I  R  C  F  M  H  K  E  *  L  L  L  R :   K  Q  R  G  H  L  P  L  G  N  V  P  Q  N  P  *  K  V  T  S  V  I  Q  I  T  A  A  R  E  A  Y  P  *  K  :  G  *  N  F  T  V  E  I  V  D  R  K  D  I  G  V  T  T  V  Q  K  F  E  T  I  R  I  D  I  I  D  V  D  Y  V  E  Q  R  V  I  T  E  E  L  A  *  S  *  A  *  L  Y  R  K  R  Q  L  R  L  I  I  I  A  A  S  V  K  E  V  A  I  T  E  E  H  A  T  K  R  M  N  S  T  L  K  W  L  Q  Q  S  R  L  E  *  R  E  L  I  A  A  A  C  A  *  E  K  D  T  T  P  G  H  V  F  I  K  A  T  P  K  A  D  S  Y  L  *  G  N  P  L  M  F  R  L  C  F  H  I  S  F  N  A  L  F  W  F  F  L  F  C  A  C  T  C  D  R  S  P  I  Q  F  *  Y  F  F  V  L  N  V  C  S  I  E  N  S  G  S  I  C  S  K  V  V  E  K  S  V  L  N  I  K  L  L  *  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49837" stop="49598"/>
                    <exon start="49201" stop="49146"/>
                    <exon start="48341" stop="48179"/>
                    <exon start="48063" stop="47975"/>
                    <exon start="47645" stop="47513"/>
                    <exon start="47340" stop="47320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHQKENKISILSHFFNLKKFSCTMSTTIWSSMLPQWRYCNKNLHYWILPPSKTKLSFFYLPILSSFTNNNDSVSPIKQNQAMYDPSEELFGLDADLQPRKVISSSSSPRSWFGPNGQYIRELPCPSCRGRGYTSCTECGIERSNLDCSLCNGKGMITCHQCGGDCVIWEESIDERPWEKARSSSPLKVKEDDEVDDLDIKLDAKRKTKRVYQSPNTEVNLKISRSLKLDDCRA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47332" stop="47234"/>
                    <exon start="47141" stop="47039"/>
                    <exon start="46594" stop="46227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQSLNAKTGLFSKRMKIIHGDPMLHAQRVAAIKKAKGTPAARKRASESMKSYFRDPDNRRKRSISMKGVKFYCRNCGQEGHRSNYCPEIRDNTDRHYRCGLCGTKGHNRRTCLKLSLIVPKKTVKVNHHCSKCQRSGHNRRTCHQKNEFDTKVVATIKTRVKRTYSCSVCLGKGHNARTCLHKSNSKSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="50493" PGL_stop="53999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50493" e_stop="50874"/>
            <exon e_start="51854" e_stop="51951"/>
            <exon e_start="52060" e_stop="52152"/>
            <exon e_start="52382" e_stop="52476"/>
            <exon e_start="52699" e_stop="52772"/>
            <exon e_start="52871" e_stop="52959"/>
            <exon e_start="53604" e_stop="53999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50493" e_stop="50874" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51854" e_stop="51951" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.822">
            <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52060" e_stop="52152" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52382" e_stop="52476" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52699" e_stop="52772" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.984">
            <gDNA_intron_boundary i_start="52773" i_stop="52870" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52959" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.898">
            <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53604" e_stop="53999" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50874"/>
              <exon start="51854" stop="51951"/>
              <exon start="52060" stop="52152"/>
              <exon start="52382" stop="52476"/>
              <exon start="52699" stop="52772"/>
              <exon start="52871" stop="52959"/>
              <exon start="53604" stop="53999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG : GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT : TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG : GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG : TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA : GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT : TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</gDNA_template>
            <first_frame> K  I  C  A  Y  T  L  L  *  *  S  L  L  Q  E  G  V  F  P  N  S  T  F  D  S  C  F  S  K  I  L  V  K  R  L  N  L  C  Y  P  F  C  L  K  S  L  V  A  M  S  V  F  S  L  S  A  S  P  A  S  G  F  S  L  N  P  T  K  T  S  S  Y  L  S  F  S  S  S  I  N  T  I  F  A  P  L  T  S  N  T  T  K  S  F  S  G  L  T  Y  K  A  A  L  P  R  N  L  S  L  T  C  R  H  S  D  Y  F  E  P  Q  Q  Q  Q  Q  Q  L  Q   : G  A  S  T  P  K  V  F  V  G  Y  S  I  Y  K  G  K  A  A  L  T  V  E  P  R  S  P  E  F  S  P  L  D  :  S  G  A  F  K  L  S  K  E  G  M  V  M  L  Q  F  A  P  A  A  G  V  R  Q  Y  D  W  S  R  K  Q  :  V  F  S  L  S  V  T  E  I  G  S  I  I  S  L  G  A  K  D  S  C  E  F  F  H  D  P  N  K  G  R  S :   D  E  G  R  V  R  K  V  L  K  V  E  P  L  P  D  G  S  G  H  F  F  N  L   : S  V  Q  N  K  L  I  N  L  D  E  N  I  Y  I  P  V  T  K  A  E  F  A  V  L  V  S  A  F  N  :  F  V  M  P  Y  L  L  G  W  H  T  A  V  N  S  F  K  P  E  D  A  S  R  S  N  N  T  N  P  R  S  G  A  E  L  E  W  N  R  *  F  W  *  R  Y  E  H  V  A  C  T  T  I  A  G  A  I  C  S  F  I  P  W  I  D  I  L  Y  E  P  S  F  T  C  T  L  Q  *  V  L  I  D  D  S  S  I  N  S  L  L  V  M  L  I  Y  C  K  L  C  F  I  V  *  Q  *  K  L  I  N  *  L  S  *  F  L  L  N  V  K  S  S  L  V  F  V  K  C  I  W  L  F  I </first_frame>
            <second_frame>  K  F  V  L  I  H  Y  S  N  R  A  C  S  K  K  G  S  F  Q  I  P  L  L  I  L  V  L  A  K  F  L  *  K  D  *  I  F  V  T  P  F  A  *  N  L  L  *  P  C  L  S  S  L  F  L  L  P  L  L  Q  V  L  V  *  T  L  L  K  P  L  L  I  S  L  F  P  L  P  L  I  P  F  L  L  L  *  L  P  T  Q  Q  K  A  F  L  V  *  P  I  K  Q  L  C  L  E  I  F  L  *  H  V  A  I  L  I  I  L  N  P  N  S  N  S  S  S  Y  R  :  G  H  L  R  L  R  F  L  L  D  T  Q  Y  T  K  G  R  Q  L  S  L  W  S  L  G  H  Q  S  S  H  L  *  I :   Q  G  P  S  S  C  Q  K  R  V  W  *  C  F  N  L  H  P  L  L  V  F  V  N  M  I  G  V  E  S  R :   S  S  R  C  Q  *  L  K  L  D  L  S  S  A  L  G  Q  K  I  H  V  S  F  S  M  I  Q  T  K  E  E   : V  M  K  V  E  S  G  K  C  *  R  L  S  H  F  Q  M  A  P  V  T  S  L  I  S  :  V  F  R  T  S  L  L  I  W  T  R  T  F  T  S  Q  L  Q  R  Q  S  S  Q  F  L  S  P  H  S  I :   L  L  C  H  T  F  *  V  G  T  L  L  *  I  P  S  S  L  K  T  P  V  A  Q  T  I  L  I  Q  D  Q  V  L  N  L  N  G  I  D  S  S  G  E  G  M  S  T  L  P  V  L  R  L  Q  G  Q  Y  V  P  S  S  P  G  S  T  F  C  M  N  P  H  S  L  A  P  S  N  E  F  *  S  T  I  V  V  L  T  L  F  L  *  C  *  F  T  V  S  C  V  L  L  C  S  S  R  N  S  L  T  D  Y  P  D  S  C  *  M  *  N  P  V  *  F  L  L  N  V  F  G  S  L   </second_frame>
            <third_frame>   N  L  C  L  Y  T  T  L  I  E  L  A  P  R  R  G  L  S  K  F  H  F  *  F  L  F  *  Q  N  S  C  K  K  I  E  S  L  L  P  L  L  P  K  I  S  C  S  H  V  C  L  L  S  F  C  F  P  C  F  R  F  *  S  K  P  Y  *  N  L  F  L  S  L  F  F  L  F  H  *  Y  H  F  C  S  F  N  F  Q  H  N  K  K  L  F  W  F  D  L  *  S  S  F  A  *  K  S  F  F  N  M  S  P  F  *  L  F  *  T  P  T  A  T  A  A  A  T  G :   G  I  Y  A  *  G  F  C  W  I  L  N  I  Q  R  E  G  S  S  H  C  G  A  S  V  T  R  V  L  T  F  R   : F  R  G  L  Q  A  V  K  R  G  Y  G  D  A  S  I  C  T  R  C  W  C  S  S  I  *  L  E  *  K  A   : G  L  L  A  V  S  D  *  N  W  I  Y  H  Q  P  W  G  K  R  F  M  *  V  F  P  *  S  K  Q  R  K  K  :  *  *  R  *  S  Q  E  S  V  E  G  *  A  T  S  R  W  L  R  S  L  L  *  S  Q :   C  S  E  Q  A  Y  *  F  G  R  E  H  L  H  P  S  Y  K  G  R  V  R  S  S  C  L  R  I  Q   : F  C  Y  A  I  P  F  R  L  A  H  C  C  K  F  L  Q  A  *  R  R  Q  S  L  K  Q  Y  *  S  K  I  R  C  *  T  *  M  E  S  I  V  L  V  K  V  *  A  R  C  L  Y  Y  D  C  R  G  N  M  F  L  H  P  L  D  R  H  F  V  *  T  L  I  H  L  H  P  P  M  S  S  N  R  R  *  *  Y  *  L  S  S  C  N  A  D  L  L  *  V  V  F  Y  C  V  A  V  E  T  H  *  L  I  I  L  I  P  V  E  C  E  I  Q  S  S  F  C  *  M  Y  L  A  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50523" stop="50874"/>
                    <exon start="51854" stop="51951"/>
                    <exon start="52060" stop="52152"/>
                    <exon start="52382" stop="52476"/>
                    <exon start="52699" stop="52772"/>
                    <exon start="52871" stop="52959"/>
                    <exon start="53604" stop="53723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLQEGVFPNSTFDSCFSKILVKRLNLCYPFCLKSLVAMSVFSLSASPASGFSLNPTKTSSYLSFSSSINTIFAPLTSNTTKSFSGLTYKAALPRNLSLTCRHSDYFEPQQQQQQLQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSKEGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNTNPRSGAELEWNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="57283" PGL_stop="59336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57283" e_stop="57313"/>
            <exon e_start="57975" e_stop="58490"/>
            <exon e_start="58644" e_stop="58757"/>
            <exon e_start="59258" e_stop="59336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.872" e_score="0.991"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57283" e_stop="57313" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57975" e_stop="58490" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="58644" e_stop="58757" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.872">
            <gDNA_intron_boundary i_start="58758" i_stop="59257" i_length="500"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="59258" e_stop="59336" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57283" stop="57313"/>
              <exon start="57975" stop="58490"/>
              <exon start="58644" stop="58757"/>
              <exon start="59258" stop="59336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGATAGAGCAATGGATTCTACTAAGAAG : GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG : ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAG : GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</gDNA_template>
            <first_frame> E  R  *  S  N  G  F  Y  *  E   : G  *  R  *  A  K  F  N  K  M  *  D  I  *  S  Q  R  R  K  *  K  A  K  K  D  V  I  *  N  D  E  *  L  *  I  F  G  N  V  F  S  R  H  I  N  S  K  K  Y  K  E  Y  Y  C  N  K  *  *  Y  S  *  R  K  R  T  S  G  T  C  F  F  E  L  R  E  K  *  *  Y  F  K  R  V  D  Q  E  G  V  I  I  *  *  S  K  *  K  *  *  K  P  *  *  I  I  I  *  W  A  *  A  W  I  R  L  *  I  H  S  R  K  *  F  R  G  A  K  E  G  E  Y  K  *  *  T  T  S  I  D  T  K  L  P  S  I  G  L  L  W  R  R  I  F  A  A  N  S  S  K  E  G  *  S  I  Y  T  G  C  V  *  H  Y  Y   : D  E  *  W  M  S  M  E  K  I  W  T  K  N  S  *  R  E  S  M  P  *  G  L  L  S  L  H  R  L  P  L  M  P  S  Q  E  T   : G  S  K  M  F  *  R  H  V  H  F  D  H  Y  I  *  R  N  T  *  S  P  P  S  I  F   </first_frame>
            <second_frame>  K  D  R  A  M  D  S  T  K  K  :  D  E  D  K  L  N  S  T  K  C  E  I  Y  E  A  K  E  E  N  E  R  L  K  R  M  L  S  K  M  M  N  D  Y  K  S  L  E  M  Y  F  Q  G  I  L  T  Q  K  N  T  K  N  I  I  A  T  S  N  N  I  H  E  E  K  E  Q  V  E  L  V  S  L  S  L  G  R  N  S  S  T  S  R  E  L  I  K  K  E  L  L  Y  D  D  Q  N  K  S  N  K  N  H  S  K  L  L  F  D  G  L  E  L  G  L  G  C  K  F  T  Q  E  N  S  F  E  G  P  K  K  E  N  I  N  N  E  R  R  V  L  I  Q  N  Y  L  P  S  D  Y  C  G  E  E  F  L  Q  Q  I  P  Q  K  K  A  R  V  S  I  R  A  V  C  D  T  I  T  :  M  N  D  G  C  Q  W  R  K  Y  G  Q  K  I  A  K  G  N  P  C  P  R  A  Y  Y  R  C  T  V  S  P  S  C  P  V  R  K  Q  :  V  Q  R  C  S  K  D  T  S  I  L  T  T  T  Y  E  G  T  H  N  H  P  L  P  F  S  </second_frame>
            <third_frame>   K  I  E  Q  W  I  L  L  R  R :   M  K  I  S  *  I  Q  Q  N  V  R  Y  M  K  P  K  K  K  M  K  G  *  K  G  C  Y  L  K  *  *  M  I  I  N  L  W  K  C  I  F  K  A  Y  *  L  K  K  I  Q  R  I  L  L  Q  Q  V  I  I  F  M  K  K  K  N  K  W  N  L  F  L  *  A  *  G  E  I  V  V  L  Q  E  S  *  S  R  R  S  Y  Y  M  M  I  K  I  K  V  I  K  T  I  V  N  Y  Y  L  M  G  L  S  L  D  *  V  V  N  S  L  K  K  I  V  S  R  G  Q  R  R  R  I  *  I  M  N  D  E  Y  *  Y  K  I  T  F  H  R  I  T  V  A  K  N  F  C  S  K  F  L  K  R  R  L  E  Y  L  Y  G  L  C  V  T  L  L  R :   *  M  M  D  V  N  G  E  N  M  D  K  K  *  L  K  G  I  H  A  L  G  L  T  I  V  A  P  S  P  P  H  A  Q  S  G  N  R :   F  K  D  V  L  K  T  R  P  F  *  P  L  H  M  K  E  H  I  I  T  P  F  H  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57284" stop="57313"/>
                    <exon start="57975" stop="58490"/>
                    <exon start="58644" stop="58757"/>
                    <exon start="59258" stop="59335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAMDSTKKDEDKLNSTKCEIYEAKEENERLKRMLSKMMNDYKSLEMYFQGILTQKNTKNIIATSNNIHEEKEQVELVSLSLGRNSSTSRELIKKELLYDDQNKSNKNHSKLLFDGLELGLGCKFTQENSFEGPKKENINNERRVLIQNYLPSDYCGEEFLQQIPQKKARVSIRAVCDTITMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRCSKDTSILTTTYEGTHNHPLPFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="59579" PGL_stop="60366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59579" e_stop="60366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="59579" e_stop="60366" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59579" stop="60366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACAAACTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</gDNA_template>
            <first_frame> T  T  N  S  S  S  T  N  S  S  S  S  N  S  Y  S  T  L  C  N  N  I  K  S  E  I  G  P  S  S  Y  L  G  R  P  C  Y  S  N  Q  P  Y  I  T  S  K  E  Q  S  E  H  D  R  S  V  Q  C  R  S  Q  N  F  *  *  I  N  S  K  K  N  A  K  V  S  H  R  I  *  S  C  D  L  K  *  I  L  D  Y  F  L  Y  I  K  V  E  S  S  F  I  R  K  E  D  Y  F  C  F  Y  F  I  C  T  V  *  F  F  C  K  R  Y  F  F  I  N  L  *  K  S  S  T  I  V  F  I  *  H  Y  L  L  F  S  L  S  *  K  K  V  F  F  I  F  G  K  N  *  T  L  K  L  P  M  L  L  L  A  T  C  F  *  D  S  F  K  L  R  A  *  S  G  S  T  *  D  E  M  D  *  V  L  M  K  S  S  S  N  R  F  F  *  R  *  I  S  E  K  F  V  L  Y  N  M  F  F  H  L  F  P  P  N  Q  F  T  G  N  M  L  D  S  Q  *  N  S  K  F  S  N  F  I  V  *  E  H  Y  Y  F  S  S  I  Q  S  K  Y  Q  *  T  Y  H  D  H  R  D  C   </first_frame>
            <second_frame>  L  Q  T  H  Q  V  L  I  L  H  H  P  I  P  T  P  H  C  V  I  I  S  K  V  K  L  D  L  L  H  I  *  G  G  H  V  I  L  I  S  L  I  L  L  Q  K  N  N  Q  N  M  I  V  Q  Y  S  A  G  V  R  I  F  D  E  L  I  Q  K  K  M  Q  K  Y  H  I  G  F  D  H  V  T  *  N  E  F  W  T  T  F  C  T  L  K  *  N  L  L  L  Y  E  R  K  T  I  F  V  F  I  L  Y  V  R  Y  N  F  F  A  K  D  I  S  L  S  T  Y  R  N  P  Q  Q  L  Y  L  Y  D  T  I  Y  F  L  V  S  H  K  K  R  S  F  S  Y  S  E  K  I  E  L  *  N  F  P  C  C  S  *  Q  H  V  F  K  T  L  L  N  S  V  P  N  R  V  Q  H  K  M  K  W  I  K  Y  *  *  R  V  V  V  I  D  F  S  N  G  E  L  V  R  N  L  C  Y  T  T  C  F  S  I  Y  F  H  Q  I  S  S  L  G  I  C  *  I  L  N  E  I  V  N  F  L  I  L  L  Y  E  S  I  T  I  F  H  Q  F  N  Q  N  I  S  E  H  I  M  T  I  E  T  A  </second_frame>
            <third_frame>   Y  K  L  I  K  Y  *  F  F  I  I  Q  F  L  L  H  I  V  *  *  Y  Q  K  *  N  W  T  F  F  I  S  R  E  A  M  L  F  *  S  A  L  Y  Y  F  K  R  T  I  R  T  *  S  F  S  T  V  P  E  S  E  F  L  M  N  *  F  K  K  K  C  K  S  I  T  *  D  L  I  M  *  P  K  M  N  F  G  L  L  F  V  H  *  S  R  I  F  F  Y  T  K  G  R  L  F  L  F  L  F  Y  M  Y  G  I  I  F  L  Q  K  I  F  L  Y  Q  L  I  E  I  L  N  N  C  I  Y  M  T  L  F  T  F  *  S  L  I  K  K  G  L  F  H  I  R  K  K  L  N  F  K  T  S  H  V  A  L  S  N  M  F  L  R  L  F  *  T  P  C  L  I  G  F  N  I  R  *  N  G  L  S  T  N  E  E  *  *  *  *  I  F  L  T  V  N  *  *  E  I  C  V  I  Q  H  V  F  P  F  I  S  T  K  S  V  H  W  E  Y  A  R  F  S  M  K  *  *  I  F  *  F  Y  C  M  R  A  L  L  F  F  I  N  S  I  K  I  S  V  N  I  S  *  P  *  R  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0058L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="64235" PGL_stop="61929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64235" e_stop="62886"/>
            <exon e_start="62597" e_stop="62464"/>
            <exon e_start="62155" e_stop="61929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64235" e_stop="62886" e_length="1350"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62885" i_stop="62598" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62597" e_stop="62464" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="62463" i_stop="62156" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62155" e_stop="61929" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64235" stop="62886"/>
              <exon start="62597" stop="62464"/>
              <exon start="62155" stop="61929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG : GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG : CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</gDNA_template>
            <first_frame> L  T  L  L  *  I  L  E  L  Y  H  S  S  T  S  Q  K  N  F  K  K  S  A  H  S  F  V  S  S  K  D  C  F  F  W  G  F  *  V  F  *  L  *  R  V  C  C  F  L  V  C  F  C  F  F  K  F  H  F  H  H  L  S  *  F  L  Q  K  V  E  S  F  F  K  F  N  S  F  L  K  I  H  L  F  F  N  N  G  I  N  G  Q  I  F  V  L  S  H  N  L  L  L  L  L  S  L  V  L  V  I  I  *  L  S  *  Q  L  L  V  T  K  N  P  L  L  S  L  *  N  P  H  L  H  K  P  F  L  G  N  F  Q  L  I  H  F  S  L  L  L  L  S  F  L  V  *  K  S  Y  L  *  C  L  L  V  C  G  V  H  C  L  L  R  L  V  G  Y  I  H  L  R  Y  L  I  L  V  Q  I  S  F  L  V  R  F  H  H  L  *  *  I  *  R  T  *  N  L  L  F  *  L  E  I  C  L  M  E  V  Y  Q  I  *  K  G  *  S  Y  L  K  S  W  I  *  V  V  I  I  *  D  Q  S  F  H  L  *  V  I  T  I  T  I  I  L  S  H  *  I  *  V  T  I  S  L  D  Q  K  Y  L  M  D  S  T  S  L  L  I  C  K  I  L  I  C  L  L  T  N  L  L  V  Q  C  L  L  F  C  F  H  F  Q  Q  F  S  L  L  V  L  L  R  I  S  L  V  V  L  F  Q  E  V  C  L  V  A  T  I  *  N  L  S  I  F  R  V  I  Y  *  L  E  S  C  L  L  V  L  D  Q  V  Q  E  T  G  Q  *  L  M  F  G  I  V  C  Q  V  L  V  L  S  L  N  I  H  I  H  F  V  R  N  K  L  *  L  L  S  P  L  Q  E  L  V  V  K  R  N  N  P  Q  L  S  L  V  L  F  *  D  L  L  L  V  L  L  *  L  W  V  H  L  V  C  *  S  F  S  L  *  R  R  L  *  E  I  E  L  K  V  I  E  M  T  A  L  L  L  R  R  I  Q  P  F  Q  K  L  L  M  E  :  G  R  Q  G  G  Q  *  E  W  Y  H  *  D  F  H  H  I  M  F  S  L  *  R  K  W  K  K  Q  Q  T  V  L  I  Q  L  I  W  L  E  K  V  P  R  V  S :   Y  I  E  V  G  L  E  M  D  Q  W  S  *  *  N  V  *  N  *  S  R  S  I  H  L  K  F  C  S  S  T  W  R  *  Y  Q  S  *  G  I  D  I  *  S  V  F  L  D  T  V  L  L  L  T  K  I  I  Q  I  Q  L  A  L  Y  L  L  C  L  K  T  S  S  M  D  L  </first_frame>
            <second_frame>  S  L  Y  Y  R  F  L  N  Y  I  I  L  Q  L  H  K  K  I  L  K  K  V  L  T  L  L  *  A  Q  K  I  V  F  F  G  D  F  E  S  F  S  Y  E  G  C  V  V  S  W  F  V  F  V  F  S  S  S  I  F  I  I  S  V  S  S  C  R  K  *  N  P  F  S  N  S  T  V  S  *  K  S  T  C  S  S  T  M  E  *  M  D  K  F  L  F  Y  P  T  I  S  F  S  C  Y  H  L  F  W  *  S  Y  N  *  V  N  N  C  W  *  Q  K  I  P  F  *  V  F  K  I  L  I  S  T  S  P  F  W  E  I  F  N  *  F  I  F  H  C  C  Y  *  A  F  *  F  K  K  A  I  F  S  V  S  W  F  V  G  F  I  A  C  *  D  *  *  V  T  F  T  *  G  T  *  Y  *  F  K  F  H  S  W  *  D  S  I  I  Y  S  E  F  K  E  P  E  I  S  C  F  S  *  K  F  V  *  W  K  C  T  R  S  E  R  V  K  V  T  *  R  V  G  F  E  W  *  *  F  R  T  K  V  S  I  F  R  *  L  Q  *  Q  *  S  C  L  I  E  F  E  *  Q  F  L  *  I  R  N  T  *  W  I  Q  Q  V  Y  S  F  A  K  S  *  F  V  F  *  Q  T  C  W  S  N  A  C  F  S  V  F  T  S  S  N  S  V  Y  *  Y  C  *  E  S  A  *  W  C  S  S  R  K  C  V  L  *  Q  Q  S  K  I  C  R  F  F  E  *  F  I  D  W  K  V  A  Y  L  S  W  I  K  F  K  K  Q  D  S  D  *  C  L  E  L  F  V  K  Y  *  Y  *  V  S  T  S  T  Y  I  L  *  E  T  S  Y  S  C  *  A  P  S  K  N  *  W  *  K  G  T  I  H  S  *  A  W  C  C  F  R  T  Y  C  W  Y  C  C  S  C  G  C  I  W  F  A  D  L  F  H  C  E  E  G  Y  E  K  *  S  *  K  L  *  K  *  Q  L  C  F  *  E  E  F  N  P  F  K  N  Y  *  W  R :   E  G  K  E  D  N  E  N  G  I  I  R  T  S  T  I  S  C  F  H  F  R  G  N  G  R  S  N  K  Q  F  *  S  N  *  S  G  W  R  R  F  P  G  S   : A  I  *  R  L  A  *  R  W  I  S  G  P  S  K  M  S  E  I  E  A  E  A  F  T  S  N  S  A  A  A  H  G  D  D  I  K  A  K  A  S  T  F  S  Q  C  S  W  T  L  C  C  Y  L  P  R  S  S  K  Y  S  *  H  C  I  Y  C  A  *  K  R  R  Q  W  I  S </second_frame>
            <third_frame>   H  S  I  I  D  S  *  I  I  S  F  F  N  F  T  K  K  F  *  K  K  C  S  L  F  C  E  L  K  R  L  F  F  L  G  I  L  S  L  L  A  M  K  G  V  L  F  L  G  L  F  L  F  F  Q  V  P  F  S  S  S  Q  L  V  P  A  E  S  R  I  L  F  Q  I  Q  Q  F  L  E  N  P  P  V  L  Q  Q  W  N  K  W  T  N  F  C  F  I  P  Q  S  P  S  L  V  I  T  C  S  G  N  H  I  T  E  L  T  I  V  G  N  K  K  S  P  F  E  S  L  K  S  S  S  P  Q  A  L  S  G  K  F  S  I  D  S  F  F  T  V  V  T  K  L  S  S  L  K  K  L  S  L  V  S  L  G  L  W  G  S  L  P  A  K  I  S  R  L  H  S  L  E  V  L  N  I  S  S  N  F  I  L  G  E  I  P  S  S  I  V  N  L  K  N  L  K  S  L  V  L  A  R  N  L  F  N  G  S  V  P  D  L  K  G  L  K  L  L  E  E  L  D  L  S  G  N  N  L  G  P  K  F  P  S  L  G  D  Y  N  N  N  N  L  V  S  L  N  L  S  N  N  F  F  R  S  E  I  P  N  G  F  N  K  F  T  H  L  Q  N  L  D  L  S  S  N  K  L  V  G  P  M  P  A  F  L  F  S  L  P  A  I  Q  S  I  S  I  A  K  N  Q  L  S  G  A  L  P  G  S  V  S  C  S  N  N  L  K  F  V  D  F  S  S  N  L  L  I  G  K  L  P  T  C  L  G  S  S  S  R  N  R  T  V  I  N  V  W  N  C  L  S  S  T  S  T  K  S  Q  H  P  H  T  F  C  E  K  Q  A  I  A  V  K  P  P  P  R  T  S  G  E  K  E  Q  S  T  V  K  L  G  V  V  L  G  L  I  A  G  I  V  V  V  V  G  A  F  G  L  L  I  F  F  I  V  K  K  V  M  R  N  R  V  E  S  Y  R  N  D  S  F  A  F  E  K  N  S  T  L  S  K  T  T  D  G   : G  K  A  R  R  T  M  R  M  V  S  L  G  L  P  P  Y  H  V  F  T  L  E  E  M  E  E  A  T  N  S  F  D  P  T  N  L  V  G  E  G  S  Q  G  Q  :  L  Y  R  G  W  L  R  D  G  S  V  V  L  V  K  C  L  K  L  K  Q  K  H  S  P  Q  I  L  Q  Q  H  M  E  M  I  S  K  L  R  H  R  H  L  V  S  V  L  G  H  C  V  V  T  Y  Q  D  H  P  N  T  A  S  T  V  F  I  V  L  E  N  V  V  N  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64176" stop="62886"/>
                    <exon start="62597" stop="62464"/>
                    <exon start="62155" stop="61931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKCSLFCELKRLFFLGILSLLAMKGVLFLGLFLFFQVPFSSSQLVPAESRILFQIQQFLENPPVLQQWNKWTNFCFIPQSPSLVITCSGNHITELTIVGNKKSPFESLKSSSPQALSGKFSIDSFFTVVTKLSSLKKLSLVSLGLWGSLPAKISRLHSLEVLNISSNFILGEIPSSIVNLKNLKSLVLARNLFNGSVPDLKGLKLLEELDLSGNNLGPKFPSLGDYNNNNLVSLNLSNNFFRSEIPNGFNKFTHLQNLDLSSNKLVGPMPAFLFSLPAIQSISIAKNQLSGALPGSVSCSNNLKFVDFSSNLLIGKLPTCLGSSSRNRTVINVWNCLSSTSTKSQHPHTFCEKQAIAVKPPPRTSGEKEQSTVKLGVVLGLIAGIVVVVGAFGLLIFFIVKKVMRNRVESYRNDSFAFEKNSTLSKTTDGGKARRTMRMVSLGLPPYHVFTLEEMEEATNSFDPTNLVGEGSQGQLYRGWLRDGSVVLVKCLKLKQKHSPQILQQHMEMISKLRHRHLVSVLGHCVVTYQDHPNTASTVFIVLENVVNGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="70730" PGL_stop="75355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70730" e_stop="70806"/>
            <exon e_start="70979" e_stop="71024"/>
            <exon e_start="72130" e_stop="72237"/>
            <exon e_start="72898" e_stop="73179"/>
            <exon e_start="74136" e_stop="74336"/>
            <exon e_start="74842" e_stop="74922"/>
            <exon e_start="75247" e_stop="75355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70730" e_stop="70806" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70979" e_stop="71024" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.877">
            <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72130" e_stop="72237" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.932">
            <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72898" e_stop="73179" e_length="282"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.758">
            <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74136" e_stop="74336" e_length="201"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74842" e_stop="74922" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75247" e_stop="75355" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70730" stop="70806"/>
              <exon start="70979" stop="71024"/>
              <exon start="72130" stop="72237"/>
              <exon start="72898" stop="73179"/>
              <exon start="74136" stop="74336"/>
              <exon start="74842" stop="74922"/>
              <exon start="75247" stop="75355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG : TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG : GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG : AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG : GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG : GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG : CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</gDNA_template>
            <first_frame> N  K  L  Y  P  A  C  C  *  V  P  F  V  S  L  L  S  S  S  *  R  *  A  K  K  C :   *  T  R  V  F  V  K  V  T  I  F  A  L  F  E  :  V  L  T  L  W  A  I  K  L  I  T  M  G  K  S  P  G  K  W  L  R  S  L  L  P  G  K  K  S  S  K  S  G  T  S  K  :  K  S  S  N  E  K  A  S  V  I  S  T  N  A  A  L  S  G  S  S  V  H  L  P  L  I  S  E  P  V  A  C  N  A  G  G  I  K  E  D  S  N  F  E  K  G  G  V  T  N  E  V  I  L  P  S  I  E  R  D  G  D  E  Q  N  T  C  L  T  L  P  E  D  T  E  K  M  R  L  E  Q  A  A  T  K  A  Q  A  I  V  R  G  Y  L  :  A  R  R  A  F  L  R  L  K  G  T  I  R  L  Q  A  A  V  R  G  H  L  V  R  R  Q  A  V  A  T  L  Y  C  I  H  G  I  V  K  L  Q  A  N  I  R  G  Q  I  A  R  R  S  S  I  G  C  E  L  I  T  K  Q  G  L  E  K  Q  :  D  A  K  Q  L  D  Y  Q  R  A  N  A  S  K  L  A  R  E  L  S  T  N  G  F  T  T  K  :  L  L  A  S  L  P  T  G  M  P  L  H  L  H  Y  G  Q  E  E  P  N  S  S  Q  E  W  L  V  R  W  T  I  S  Q  I  W  </first_frame>
            <second_frame>  T  N  F  T  L  L  V  V  E  C  R  L  S  L  Y  S  L  L  L  E  D  E  Q  R  N   : V  K  Q  G  F  L  L  K  L  Q  S  L  L  C  L  R :   F  L  R  C  G  Q  S  N  L  L  L  W  E  N  L  L  E  S  G  S  G  H  C  C  Q  G  K  S  L  P  N  L  A  H  Q  R :   N  L  Q  M  R  K  H  L  *  F  P  P  M  R  H  C  P  V  R  L  S  I  C  H  *  Y  L  N  Q  L  L  V  M  L  V  E  *  K  K  T  R  T  L  R  K  E  G  S  L  M  R  *  F  S  L  L  S  S  E  M  E  T  N  R  I  L  V  L  P  Y  L  R  I  L  R  K  *  G  L  S  K  Q  L  Q  R  H  K  L  L  L  G  V  I  W :   L  A  E  H  F  L  G  S  R  G  P  *  G  Y  K  L  Q  Y  V  A  I  W  S  E  G  R  L  L  L  H  Y  T  V  Y  M  A  L  S  N  F  K  Q  I  S  V  A  R  L  L  D  V  P  V  L  A  V  N  *  *  P  N  K  D  L  K  N  R :   M  P  N  N  W  I  I  R  E  L  M  H  P  N  *  H  G  S  Y  P  L  T  D  S  L  Q  S :   Y  L  L  H  Y  L  L  E  C  L  Y  T  S  I  M  V  K  R  S  Q  I  L  V  R  N  G  L  S  V  G  L  Y  H  R  F  G </second_frame>
            <third_frame>   Q  T  L  P  C  L  L  L  S  A  V  C  L  F  T  L  F  F  L  K  M  S  K  E  M  :  L  N  K  G  F  C  *  S  Y  N  L  C  S  V  *   : G  S  Y  V  V  G  N  Q  T  Y  Y  Y  G  K  I  S  W  K  V  A  Q  V  I  V  A  R  E  K  V  F  Q  I  W  H  I  K   : E  I  F  K  *  E  S  I  C  N  F  H  Q  C  G  I  V  R  F  V  C  P  S  A  I  D  I  *  T  S  C  L  *  C  W  W  N  K  R  R  L  E  L  *  E  R  R  G  H  *  *  G  D  S  P  F  Y  R  A  R  W  R  R  T  E  Y  L  S  Y  L  T  *  G  Y  *  E  N  E  A  *  A  S  S  Y  K  G  T  S  Y  C  *  G  L  S   : G  S  P  S  I  S  *  A  Q  G  D  H  K  A  T  S  C  S  T  W  P  S  G  Q  K  A  G  C  C  Y  I  I  L  Y  T  W  H  C  Q  T  S  S  K  Y  P  W  P  D  C  *  T  F  Q  Y  W  L  *  T  N  N  Q  T  R  T  *  K  T   : G  C  Q  T  I  G  L  S  E  S  *  C  I  Q  T  S  T  G  A  I  H  *  R  I  H  Y  K   : A  T  C  F  I  T  Y  W  N  A  S  T  P  P  L  W  S  R  G  A  K  F  *  S  G  M  A  C  P  L  D  Y  I  T  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70983" stop="71024"/>
                    <exon start="72130" stop="72237"/>
                    <exon start="72898" stop="73179"/>
                    <exon start="74136" stop="74336"/>
                    <exon start="74842" stop="74922"/>
                    <exon start="75247" stop="75354"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRVFVKVTIFALFEVLTLWAIKLITMGKSPGKWLRSLLPGKKSSKSGTSKKSSNEKASVISTNAALSGSSVHLPLISEPVACNAGGIKEDSNFEKGGVTNEVILPSIERDGDEQNTCLTLPEDTEKMRLEQAATKAQAIVRGYLARRAFLRLKGTIRLQAAVRGHLVRRQAVATLYCIHGIVKLQANIRGQIARRSSIGCELITKQGLEKQDAKQLDYQRANASKLARELSTNGFTTKLLASLPTGMPLHLHYGQEEPNSSQEWLVRWTISQIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="75381" PGL_stop="76231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75381" e_stop="76231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="75381" e_stop="76231" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75381" stop="76231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGGGAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</gDNA_template>
            <first_frame> S  G  K  K  T  S  K  C  *  S  R  H  C  Y  V  K  A  Q  C  K  E  S  T  F  *  K  N  A  E  R  F  K  S  F  H  F  F  G  V  R  K  E  E  I  K  S  F  G  K  L  C  S  S  E  S  R  K  *  D  *  E  G  K  T  *  F  K  E  N  V  Q  P  Y  I  G  K  T  S  S  V  *  G  *  H  *  A  K  K  A  K  S  *  Q  I  I  K  H  G  I  *  *  T  I  E  K  F  R  R  D  S  *  K  F  Y  *  C  G  P  T  S  R  S  G  G  R  Y  Y  H  S  F  G  Y  P  F  C  I  *  Y  S  S  Q  I  D  Y  *  C  C  G  S  E  I  D  H  *  *  Q  R  G  *  Y  S  C  R  E  *  G  F  L  Y  *  P  *  *  *  *  R  K  *  E  Q  Q  G  *  Q  K  S  F  F  T  C  K  A  *  C  R  C  K  Y  T  H  N  K  K  G  A  Q  L  H  G  S  N  Q  V  C  *  S  *  A  E  G  A  S  L  T  K  V  W  A  R  C  G  *  E  E  C  R  N  Q  T  S  F  F  T  V  P  Y  E  W  K  A  E  F  I  T  I  T  T  G  A  E  A  G  P  S  *  C  *  R  R  N  Q  D  R  Q  I  F  I  V  F  K  G  W  Y   </first_frame>
            <second_frame>  P  G  K  K  H  Q  N  A  E  A  D  I  A  M  S  K  H  S  V  R  K  V  H  S  K  K  M  Q  N  G  S  N  H  S  T  S  S  G  S  E  K  K  K  S  S  H  L  V  N  S  V  L  Q  N  P  G  S  E  I  K  K  V  K  H  S  L  K  K  T  S  S  P  I  L  E  K  P  V  Q  S  E  V  D  T  E  R  K  R  Q  S  H  D  K  S  S  S  M  A  S  D  E  P  L  K  N  S  E  G  T  V  E  N  S  T  N  V  A  P  P  P  V  V  V  D  D  T  I  T  H  L  D  I  L  S  V  S  D  T  H  H  K  S  T  T  D  A  A  D  Q  K  S  I  T  D  N  R  E  D  D  T  P  V  A  N  E  D  F  C  T  N  H  D  N  N  E  G  S  E  S  N  K  V  N  R  R  V  S  L  P  A  K  H  D  V  D  A  S  T  P  T  T  R  K  V  P  S  Y  M  A  P  T  K  S  A  K  A  K  L  K  E  Q  A  S  P  R  F  G  Q  D  V  A  E  K  N  A  V  T  R  R  H  S  L  P  S  P  M  N  G  K  L  S  S  S  P  S  P  R  V  Q  R  L  V  Q  A  S  A  K  E  G  I  K  I  D  R  S  L  S  S  S  R  D  G  T  </second_frame>
            <third_frame>   R  E  K  N  I  K  M  L  K  Q  T  L  L  C  Q  S  T  V  *  G  K  Y  I  L  K  K  C  R  T  V  Q  I  I  P  L  L  R  G  Q  K  R  R  N  Q  V  I  W  *  T  L  F  F  R  I  Q  E  V  R  L  R  R  *  N  I  V  *  R  K  R  P  A  L  Y  W  K  N  Q  F  S  L  R  L  T  L  S  E  K  G  K  V  M  T  N  H  Q  A  W  H  L  M  N  H  *  K  I  Q  K  G  Q  L  K  I  L  L  M  W  P  H  L  P  *  W  W  T  I  L  S  L  I  W  I  S  F  L  Y  L  I  L  I  T  N  R  L  L  M  L  R  I  R  N  R  S  L  I  T  E  R  M  I  L  L  S  R  M  R  I  F  V  L  T  M  I  I  M  K  E  V  R  A  T  R  L  T  E  E  F  L  Y  L  Q  S  M  M  S  M  Q  V  H  P  Q  Q  E  R  C  P  A  T  W  L  Q  P  S  L  L  K  L  S  *  R  S  K  P  H  Q  G  L  G  K  M  W  L  R  R  M  P  *  P  D  V  I  L  Y  R  P  L  *  M  E  S  *  V  H  H  H  H  H  G  C  R  G  W  S  K  L  V  L  K  K  E  S  R  S  T  D  L  Y  R  L  Q  G  M  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75382" stop="76230"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKKHQNAEADIAMSKHSVRKVHSKKMQNGSNHSTSSGSEKKKSSHLVNSVLQNPGSEIKKVKHSLKKTSSPILEKPVQSEVDTERKRQSHDKSSSMASDEPLKNSEGTVENSTNVAPPPVVVDDTITHLDILSVSDTHHKSTTDAADQKSITDNREDDTPVANEDFCTNHDNNEGSESNKVNRRVSLPAKHDVDASTPTTRKVPSYMAPTKSAKAKLKEQASPRFGQDVAEKNAVTRRHSLPSPMNGKLSSSPSPRVQRLVQASAKEGIKIDRSLSSSRDGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97266" PGL_stop="97914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97266" e_stop="97914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="97266" e_stop="97914" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97266" stop="97914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATAGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTACCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCTAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  S  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  Y  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  *  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  I  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  T  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  *  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  L  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97267" stop="97914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDIVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFTAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="97925" PGL_stop="98732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97925" e_stop="98732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="97925" e_stop="98732" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97925" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCCTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  P  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  N  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97927" stop="98730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 184456 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 8783 bytes was the average size of a spliced alignment
$ 26128 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1536 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 20:27:43
-->
