<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:27:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6704" ref_strand="+" ref_description="SGN-M6704 C2_At1g25375 [cosii_markers]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaaccttttcgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatgttagtacaaactcgttgatcgtaggggatcattgtgtgggccaaggaagtgctctcttagatagcgcgtctggtggaaatatgcaggattactttcagacaacatacaaattcattgagctctctcctcatgcgttgattcccatgcacggaagaactaatatgtggccaaaacacatgctctgtgggtatctcaaaaaccggagaaacagagaatcaaccatcttaatggcaatagagaatggtgctaaaacattgtttgacatagttgcttacacttatgccgatgttgaccgaagcctctggttttatgcctcatcaaatgtgagactccacgtggatcatctagcagtccagaataaattaccaagtgacttctctttagaaaatttcaatcgcagttgtgctgagtttgctggcatggtgcataaaatataaggaaactttcagaaagcagccccctaagacctgcagttacctttcttcctttaggatttttcaatccaaagttttcaggcaagttatgggctgcgtttcctttttaggtggatattagaatactcaagtagtgcattctcaataaagcatcacacagtcagagcggctttactagtcggtactggagctctggccattggttgcttggctgtatcattctccagaaaaaatgaactcctctctaggtgatgcaaacaattcttgctccggaaggcagatttcgtcaaggaagttaatttaccgtctggctccaggtcatgttctctctcattgtaccagaagctctaggagaagcatgaagatgtttacattagtagtaaaatactcattgatagtgttgtgcgcataactcgccatcattgttctgcatttctgatatttttttgtgattaaagaaaccgattggatcaattagaagtgtaagacaagattattgttaatggatcacacaacttctgagacagttatcatagaaatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29506" stop="37255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29806" g_stop="29858" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30412" g_stop="30591" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31539" g_stop="31614" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32118" g_stop="32195" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32947" g_stop="33032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33560" g_stop="33633" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="547" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33634" i_stop="33935" i_length="302">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33936" g_stop="33981" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="593" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33982" i_stop="34973" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34974" g_stop="35083" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="703" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35084" i_stop="35445" i_length="362">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35446" g_stop="35620" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="878" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36168" g_stop="36287" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="998" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36288" i_stop="36466" i_length="179">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36467" g_stop="36955" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="999" r_stop="1487" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-M6704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29806" e_stop="29858"/>
          <exon e_start="30412" e_stop="30591"/>
          <exon e_start="31539" e_stop="31614"/>
          <exon e_start="32118" e_stop="32195"/>
          <exon e_start="32947" e_stop="33032"/>
          <exon e_start="33560" e_stop="33633"/>
          <exon e_start="33936" e_stop="33981"/>
          <exon e_start="34974" e_stop="35083"/>
          <exon e_start="35446" e_stop="35620"/>
          <exon e_start="36168" e_stop="36287"/>
          <exon e_start="36467" e_stop="36955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGGGTAAGATATGTTTGATCAAGAAACTTCATATCCTTTAACAAATGAATATTTTCACTTGATAAATAATTTGTGGACATGATTACCAATTTTAAATGTAGCTTCCCCCGAAATAGTAATAATAAAAAAATGCAGTTTCCTAGTCCTTTTGAACAATTCTTTTAGCTTTTCTATGATGATACGGAAAACAATCTGTTCAACAAGTCTGTGATTGTGTTGGCCTACTTTGCATTTGTTTGTGATAGCTTCTCAATTTCTTCTCCTTTCTTAAAAATTGCTAATTTGATGTATCCCGTTGGTTTCAGCCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAGGTAAGTAACAATAGCATCTGTATGTTTCTTTTTGTCACTCTGTCATACTTGGAATGCTAATTAGAAGATGATGATTGGTTGTTGGTGTCTTAACTTTTGAAACTTGATTTAAATAAAAGGATCCGACTCTTCAACCAGAAAAAACCCACTATACTTTTCTTTTCCCATATAAAACTCGTTTACTTGTTTTCTTGTCAATGAGCAAGCCTTGCTCATGCATTCTATTAACTTTCTTGAATAGCCTTTTCCTTTCCTCTCTTTAGCCTTTGAAACTTAAATGTGAACTAGCACCTCTACTGAAAGCAGTGAGAATTAAGACTATACCACCACATTTTTCATATTCAAATTTTATATCCAATTCTAGATTGTTGATTCATATCAAAAAGATCAGCTATGAAAGTTTTTAACAGTTTTAGTCAATTGAATGGCAATCTAAATCTAGTATTGTGTCTGTTAAGGGTACTTAGATGGTGAAACTATTATGTTTTTAATATTGTCTTCCACAGGTTCTTTAATCTACATTCAGGTTCCCCTATTAAAATTTGAAAACATTCACTCAAAAATCACTAAAAACTCGCTAAAAAAGTGAATGAATTTCTTTCTGCTAGGGACAGGGGTTCAGCAAGAGTGTTTTAGCTGAATTCTGTAAATCTAACTTTGATAGTTTTATTTACCTTTTACAATAATGCTCATTTTATAATACCTTGTGACAATACTGAATAAGATATGGATTAAAGGAAGTAGGGGGTTGGGGAATCAACAAAAGTGCATTTGTGAATTCTGTAACTTAAATTGCTTTCTAGTTTTATTTTTATTTTCCGATAATGATTTTTGCTGTTTTCAATAACCCTAGTGAATATACAGAAAAAGATTAAGATTAGAGCAACTTGTAGGTGTTCATATCTGTTTCTATTATCATGTTCAACTATGACTTGGTCTTTCTCTTCTTTTTGAAATTCTCAGTATCGGAACTTCAATTTTTTTTTAAACAGGATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAAGTATGAACTTCAGACCTCTTATGACATATTCCATATATGCTTTCACTCAGAGTGCCTTTTCTGTCTATCAGCTATCGGCAAAATCATTGCCGAAGTATATGGTTAACAATTGTGCAGAAACCTTGCTTGTTTCCTTGTTGCTTTCTCCCACCATGTAAATCTTGTAGTCTTGTTTTATTGAACATTATGCTAATATATGTCATTAGCTGTGAAATTTGTTCAGTTAGTTTTATGTTCAATGTTTATTGATGTTGTCTAAGATAGATGTCAATCAAATTATCATTCTCAAAAAATTTATAAAACAGATACACTGATAGATTAAATTGACGCACATCTAATTTATTATTATCTGGGATTGTCAGAAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGTGTATGTATTCTTTGTTCCCTTGTGATTTAACATCAATTCATTATATGTCAGAGCTTATATTTATGATCACTCCTGTTTTGGATGTCAAATTTAAGGTTCAATAATAAGCTTACTAAAACTGGAGTCCTCTTTGGAAATCCGTGACGCTTGGCTGTCTTAGCAGCTTTGAAAGAGCCTCTCTTTACAGTCAAAACTGTCTGTTTCATAGAATTATGGTCCATGGAATGTAGTAGTTTAAACTTTTTTGTACCAGTTTTCACATTAAATGATATGCATGCTTATGTTTCCTGAATGACTTAACCTTGAAGTTGATATAATTGCTTTTAGTCATGTGGAAACTTGTGGTGATCCATAAAATTAGATTCAGCCATTTGAGCCCCGTAGATAATAATTGACGAGAGATTCCATGCTTGCCAACACTTTTATGTCCTGATTTGCTCCATGTCTGGCTTGAGTGTAGACATAAGTGCAATAGTTGGGCCATATATTTATATGCCTTTAGTAACTTAATTGATTAGGATACCAAACTTTTCTGTGTCATGTGCAGGACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAGGTTGGATAACTACTTATTTTCCTTGTAATAGCTAGTTGCTACTGCCTACGTACATTTCATCAGATACAGTCTCGAAAGTAGATCACTATCACAATTATGGACGACTACCTATTTGTTTGTGCACTTGGTTTTTATATTTCCAAAGGGCCTTAGAAGTCATTTCCATCATCGATTTGCAGGATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG..............................................................................................................................................................................................................................................................................................................CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA..........................................................................................................................................................................................................................................................................................................................................................................AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAG...................................................................................................................................................................................GATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8622-2" ref_strand="+" ref_description="SGN-M8622-2 C2_At5g08720-2 [cosii_markers]">
      <seq>aagttcttcactttcacttcactctatgtattctctgcatttccatttcacaatcagaccaaaaaactatgaaatcaacaacaaattttcatcaatttgttcatggaaatcgagtttctcgtctttggaatacgttaaattcgatttgaagaatgagaattttaaaacttattattacagaaaaggggattttttaggaggagatgcaatgggagtagagaaaaatgttggatgtgaagtggaagttgtttcgtggagagaacgaaagattaaagctgagattttggtgaatgctgatgttgattctgtttggaatgctcttactgattatgaaaggctcgctgattttgtcccaaatcttgtcagcagtaggagaattccttgtccacatcctggacgtatttggttggagcaaagaggtatccaacgatcactctattggcacatagaagctcgtgttgtattggatctccaagaattcatcaaatcgaataatgttcgcgagctccatttctctatggttgacggtgacttcaagaagtttgaaggcaaatggtctgtgagagttggaacaaggtcttcaacagctatactaagttatgaagttagtgtcataccaaggttcaactttcctgccatattcttggagaggattatcaggtcagacctcccggtaaatcttcaagcgttgtcctgtagagctgaaaacagttatcaaggttatcagagtgttaccaaagaagaacctggttcttaccttatttnncactagacagatattgatcatgtcatttcccacgaaaataaatcttccggtgaacacttaaaggacaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62220" stop="64848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62520" g_stop="62888" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63898" g_stop="64018" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="490" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64111" g_stop="64196" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="576" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64304" g_stop="64494" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="767" r_length="191" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-M8622-2" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8622-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62520" e_stop="62888"/>
          <exon e_start="63898" e_stop="64018"/>
          <exon e_start="64111" e_stop="64196"/>
          <exon e_start="64304" e_stop="64494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAAACCAAAAAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAGGTAATAGATGCAATGTATCTCCTTTTTGCTAATAAATGATGTTTGTGTTGTAAATCGGAGCGAGGATTTGAAGCTTATGAGTTTGGGATTTTAGGGGGGGAGTTGGAGTGGTTAGTTGCTAGTTGAGACTAAGTTGAGCTTAGGGGTGAAGCTAGATAGGGTCGAGAGGTTCATCTAAATACCCTTCGTCGAAAAATTACACTATTTATACATGGTTGATTTTTTTTATATGTATATATATAGTAGACGTTGAACTTTCTTTCGGCTTCTTTGTGTGTTTATTTATTCATATTTCGAACCTATTTCAGTGAAAATTCTGGCTCCGCCATTGGTTGAGATGTTTAGATGTGCACTCTCAAAGTTATAGTGCTTTATGTGTGAGTTGAGGACAAGTTTGAGTGTGTGTTTACGTATTATGACTTCTTTACATATTGAATGTATTCTTAAAACAAATATAGGATTTGAATCAAAACTAATGTTTTTGGCAAAATCAACATCCTACACTCTACATTCGATCTTGTTACCAAGGGGTGTGAACTAGTGATCAATGAAGTGAGTGGAGAACCGTGAGGTCTTATGCTTAAATTAATACAGAGGCACAAAAAATGCTATGTGGTTTCTTCCTATAGCATTGATAGATAGAGTTACTTGGATATCTATATTAGTGAGGAGCTAACAGGTACCTAGAGGAATAGTCAGGTGCGGGCAAGCTAGCTCAAACACCTCATTTTGTTTTTCGTGAAGTTCGTACTTTGGTACAACTTGAGACATGCCTACAACTTACTGCAATGAGAGGCTGTCTTTGGCCTTTATTCTTCTGGTACAATTCGGAATAAACATATTCGGTACAAACAGTAGAGATGGATATCTGTTACGGGCGTCTCTAGAGTCTTTGCTGACATTCATATTATCTTGAAGTTCTCTGTTTGTCATATCGTCATGGTTCTGATGATTTTTTGGGATATACTTTGCACTACACACTGATGCATGAATCACTTGTTAATCACAGTAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCCGTAAGCTTATGAAATCTCTGTGTATGATAGTTCATCTGAGTTGGGTGTCTAAACCAAGAGCTGTGTTTTACATTACTCTTGTATAAATTTAGGATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAGGTATGATCTTTATCGAAGCAGACAGAACTTTGTTGTTCCTAATTTTCCTTTTATGTTGTCTTCAAGAATAATGCAGAGATCGACCTGCAAATGCCTTTTCTTTTCAGGTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATC</genome_strand>
        <mrna_strand>AAGTTCTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAGACCAAAAAACTATGAAATCAACAACAAATTTTCATCAATTTGTTCATGGAAATCGAGTTTCTCGTCTTTGGAATACGTTAAATTCGATTTGAAGAATGAGAATTTTAAAACTTATTATTACAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTTTGGAATGCTCTTACTGATTATGAAAGGCTCGCTGATTTTGTCCCAAATCTTGTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAGAATTCCTTGTCCACATCCTGGACGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCACTCTATTGGCACATAGAAGCTCGTGTTGTATTGGATCTCCAAGAATTCATCAAATCG............................................................................................AATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCTGTGAGAGTTGGAACAAG...........................................................................................................GTCTTCAACAGCTATACTAAGTTATGAAGTTAGTGTCATACCAAGGTTCAACTTTCCTGCCATATTCTTGGAGAGGATTATCAGGTCAGACCTCCCGGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAGTGTTACCAAAGAAGAACCTGGTTCTTACCTTATTTNNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8622" ref_strand="+" ref_description="SGN-M8622 C2_At5g08720 [cosii_markers]">
      <seq>ctgggcgtatttggttggagcaaagaggtatccaacgatctctctattggcacatagaagctcgcgttgtattggatctccaagaattcattaaatccgataatgttcgcgagctccatttctctatggttgacggtgacttcaagaagtttgaaggcaaatggtcagtgagagttggaacaaggtcttcaacggctatactaagttatgaagttagtgtcataccgaggttcaactttccagccattttcttggagaggattatcaggtcagacctccccgtaaatcttcaagcgttgtcctgtagagctgaaaacagttatcaaggttatcagaatgttaccaaagaggaacctggttcttaccttattgatcatgtcatatcccacgaaaataaatcttcgggtgaacacttgaaggaaaagtttgtcaaagccacttttggcccgtcgacaccagttacaagtgacgtgactaataattggggaatatttgggaaaacttgcagacttgacaagccatgtgtggtggatgaagtccatctccgaagatttgatggtctactggaaaatggaggtgttcatcgttgcgttgttgctagtattacagtaaaagctccagttcgcgaagtatggaatgttttgactgcttatgaaagtcttcccgagatagttccgaatttagcaatcagtaagatcttatcacgagacaacaacaaagttcgcattcttcaggaaggatgcaagggtcttctatacatggttctgcatgcacgtgtcgttctagacttatctgaactcatataacaagaaattagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63621" stop="65502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63921" g_stop="64018" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64111" g_stop="64196" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="184" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64304" g_stop="64685" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="566" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.395" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64779" g_stop="64879" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="667" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64880" i_stop="64959" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64960" g_stop="65026" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="734" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65027" i_stop="65114" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65115" g_stop="65202" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="822" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-M8622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63921" e_stop="64018"/>
          <exon e_start="64111" e_stop="64196"/>
          <exon e_start="64304" e_stop="64685"/>
          <exon e_start="64779" e_stop="64879"/>
          <exon e_start="64960" e_stop="65026"/>
          <exon e_start="65115" e_stop="65202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCCGTAAGCTTATGAAATCTCTGTGTATGATAGTTCATCTGAGTTGGGTGTCTAAACCAAGAGCTGTGTTTTACATTACTCTTGTATAAATTTAGGATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAGGTATGATCTTTATCGAAGCAGACAGAACTTTGTTGTTCCTAATTTTCCTTTTATGTTGTCTTCAAGAATAATGCAGAGATCGACCTGCAAATGCCTTTTCTTTTCAGGTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTGGTAATTAAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGTAGTCCCTTTGATAAATTGATTTTGGAAGTGAAGGAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGAGTAAGTTTTCAGGACTTTCTTCTAATATAATTTCTGGCTTTTTCATCATACTAACGGTAATTCATCCCAAACTGTTGCAGGATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAGGTAAATGACAGAGTGAATAATACGTTGTGTATTGCAATGAGATATGTTTCTCGAATATTAGGTGATGCTTCTACTTGTCCATTTCCAGGAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTG</genome_strand>
        <mrna_strand>CTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCC............................................................................................GATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAG...........................................................................................................GTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG.............................................................................................GAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGA................................................................................GATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAG........................................................................................GAAGGATGCAAGGGTCTTCTATACATGGTTCTGCATGCACGTGTCGTTCTAGACTTATCTGAACTCATATAACAAGAAATTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29806" PGL_stop="36955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29806" e_stop="29858"/>
            <exon e_start="30412" e_stop="30591"/>
            <exon e_start="31539" e_stop="31614"/>
            <exon e_start="32118" e_stop="32195"/>
            <exon e_start="32947" e_stop="33032"/>
            <exon e_start="33560" e_stop="33633"/>
            <exon e_start="33936" e_stop="33981"/>
            <exon e_start="34974" e_stop="35083"/>
            <exon e_start="35446" e_stop="35620"/>
            <exon e_start="36168" e_stop="36287"/>
            <exon e_start="36467" e_stop="36955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.567" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29806" e_stop="29858" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.931">
            <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30412" e_stop="30591" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.567">
            <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31539" e_stop="31614" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.841" acc_prob="0.958">
            <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32118" e_stop="32195" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32947" e_stop="33032" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.086" acc_prob="0.992">
            <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33560" e_stop="33633" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.941" acc_prob="0.667">
            <gDNA_intron_boundary i_start="33634" i_stop="33935" i_length="302"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33936" e_stop="33981" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33982" i_stop="34973" i_length="992"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34974" e_stop="35083" e_length="110"/>
          </exon>
          <intron i_serial="8" don_prob="0.935" acc_prob="0.964">
            <gDNA_intron_boundary i_start="35084" i_stop="35445" i_length="362"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35446" e_stop="35620" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36168" e_stop="36287" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.913" acc_prob="0.937">
            <gDNA_intron_boundary i_start="36288" i_stop="36466" i_length="179"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36467" e_stop="36955" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29806" stop="29858"/>
              <exon start="30412" stop="30591"/>
              <exon start="31539" stop="31614"/>
              <exon start="32118" stop="32195"/>
              <exon start="32947" stop="33032"/>
              <exon start="33560" stop="33633"/>
              <exon start="33936" stop="33981"/>
              <exon start="34974" stop="35083"/>
              <exon start="35446" stop="35620"/>
              <exon start="36168" stop="36287"/>
              <exon start="36467" stop="36955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG : GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG : CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG : GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG : ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG : GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG : CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG : GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA : AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGT : GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAG : GATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</gDNA_template>
            <first_frame> M  I  Q  Q  N  L  G  H  G  K  F  L  P  P  *  N  V  R :   S  T  L  L  V  L  K  L  Y  L  W  K  V  E  Q  L  N  L  F  V  Q  Q  T  *  L  F  S  C  L  N  A  M  L  M  S  M  M  M  V  L  S  L  M  G  K  H  S  *  *  T  Q  D  V  S  H  L  H  M  N  S :   S  R  K  S  L  L  L  C  R  E  N  *  S  S  L  *  H  I  I  I  M  I  M  L  M  :  V  F  Q  *  S  R  S  T  V  P  M  L  V  F  W  L  M  K  I  R  F  V  E  L  E  K  :  M  I  G  L  S  H  M  F  Q  F  L  D  L  R  K  F  A  L  A  I  R  N  *  E  L  S  *  H  R :   D  I  Q  M  D  I  W  H  C  F  M  L  V  Q  T  R  *  S  *  G  I  I  V  W   : A  K  E  V  L  S  *  I  A  R  L  V  E  I  C  R :   I  T  F  R  Q  H  T  N  S  L  S  S  L  L  M  R  *  F  P  C  T  E  E  L  I  C  G  Q  N  T  C  S  V  G  I  S   : K  T  G  E  T  E  N  Q  P  S  *  W  Q  *  R  M  V  L  K  H  C  L  T  *  L  L  T  L  M  P  M  L  T  E  A  S  G  F  M  P  H  Q  M  *  D  S  T  W  I  I  *  Q  S  R  I  N  Y  Q  V :   T  S  L  *  K  I  S  I  A  V  V  L  S  L  L  A  W  C  I  K  Y  K  E  T  F  R  K  Q  P  P  K  T  C  S  Y  L  S  S  F  R :   I  F  Q  S  K  V  F  R  Q  V  M  G  C  V  S  F  L  G  G  Y  *  N  T  Q  V  V  H  S  Q  *  S  I  T  Q  S  E  R  L  Y  *  S  V  L  E  L  W  P  L  V  A  W  L  Y  H  S  P  E  K  M  N  S  S  L  G  D  A  N  N  S  C  S  G  R  Q  I  S  S  R  K  L  I  Y  R  L  A  P  G  H  V  L  S  H  C  T  R  S  S  R  R  S  M  K  M  F  T  L  V  V  K  Y  S  L  I  V  L  C  A  *  L  A  I  I  V  L  H  F  *  Y  F  F  V  I  K  E  T  D  W  I  N  *  K  C  K  T  R  L  L  L  M  D  H  T  T  S  E  T  V  I  I  E  I  I   </first_frame>
            <second_frame>  *  F  N  K  I  W  D  M  E  N  S  S  H  L  E  M  S   : G  V  P  S  W  C  *  N  Y  T  Y  G  K  *  N  S  *  T  F  S  Y  N  K  L  N  C  F  P  A  *  M  Q  C  *  *  A  *  *  W  F  Y  R  S  W  G  S  T  H  S  R  P  R  M  *  V  I  F  I  *  T   : A  Q  G  N  H  C  C  F  A  E  K  T  S  R  L  C  D  T  S  S  *  *  S  C  *  W :   S  F  S  S  P  E  V  Q  S  R  C  S  S  F  G  S  *  K  Y  D  S  S  N  *  K  R :   *  L  V  S  P  I  C  F  S  F  W  I  *  G  N  L  H  W  Q  S  E  I  K  N  Y  L  S  T   : G  T  Y  R  W  T  Y  G  T  A  S  C  *  Y  K  L  V  D  R  R  G  S  L  C  G  :  P  R  K  C  S  L  R  *  R  V  W  W  K  Y  A   : G  L  L  S  D  N  I  Q  I  H  *  A  L  S  S  C  V  D  S  H  A  R  K  N  *  Y  V  A  K  T  H  A  L  W  V  S  Q  :  K  P  E  K  Q  R  I  N  H  L  N  G  N  R  E  W  C  *  N  I  V  *  H  S  C  L  H  L  C  R  C  *  P  K  P  L  V  L  C  L  I  K  C  E  T  P  R  G  S  S  S  S  P  E  *  I  T  K   : *  L  L  F  R  K  F  Q  S  Q  L  C  *  V  C  W  H  G  A  *  N  I  R  K  L  S  E  S  S  P  L  R  P  A  V  T  F  L  P  L   : G  F  F  N  P  K  F  S  G  K  L  W  A  A  F  P  F  *  V  D  I  R  I  L  K  *  C  I  L  N  K  A  S  H  S  Q  S  G  F  T  S  R  Y  W  S  S  G  H  W  L  L  G  C  I  I  L  Q  K  K  *  T  P  L  *  V  M  Q  T  I  L  A  P  E  G  R  F  R  Q  G  S  *  F  T  V  W  L  Q  V  M  F  S  L  I  V  P  E  A  L  G  E  A  *  R  C  L  H  *  *  *  N  T  H  *  *  C  C  A  H  N  S  P  S  L  F  C  I  S  D  I  F  L  *  L  K  K  P  I  G  S  I  R  S  V  R  Q  D  Y  C  *  W  I  T  Q  L  L  R  Q  L  S  *  K  S  S  </second_frame>
            <third_frame>   D  S  T  K  S  G  T  W  K  I  P  P  T  L  K  C  Q  :  E  Y  P  L  G  V  K  I  I  P  M  E  S  R  T  A  K  P  F  R  T  T  N  L  I  V  F  L  P  E  C  N  A  N  E  H  D  D  G  F  I  A  H  G  E  A  L  I  V  D  P  G  C  K  S  S  S  Y  E  Q  :  L  K  E  I  I  A  A  L  P  R  K  L  V  V  F  V  T  H  H  H  N  D  H  V  D   : G  L  S  V  V  Q  K  Y  S  P  D  A  R  L  L  A  H  E  N  T  I  R  R  I  R  K   : D  D  W  S  L  P  Y  V  S  V  S  G  S  E  E  I  C  I  G  N  Q  K  L  R  I  I  L  A  P  :  G  H  T  D  G  H  M  A  L  L  H  V  S  T  N  S  L  I  V  G  D  H  C  V  G :   Q  G  S  A  L  L  D  S  A  S  G  G  N  M  Q  :  D  Y  F  Q  T  T  Y  K  F  I  E  L  S  P  H  A  L  I  P  M  H  G  R  T  N  M  W  P  K  H  M  L  C  G  Y  L  K :   N  R  R  N  R  E  S  T  I  L  M  A  I  E  N  G  A  K  T  L  F  D  I  V  A  Y  T  Y  A  D  V  D  R  S  L  W  F  Y  A  S  S  N  V  R  L  H  V  D  H  L  A  V  Q  N  K  L  P  S  :  D  F  S  L  E  N  F  N  R  S  C  A  E  F  A  G  M  V  H  K  I  *  G  N  F  Q  K  A  A  P  *  D  L  Q  L  P  F  F  L  *  :  D  F  S  I  Q  S  F  Q  A  S  Y  G  L  R  F  L  F  R  W  I  L  E  Y  S  S  S  A  F  S  I  K  H  H  T  V  R  A  A  L  L  V  G  T  G  A  L  A  I  G  C  L  A  V  S  F  S  R  K  N  E  L  L  S  R  *  C  K  Q  F  L  L  R  K  A  D  F  V  K  E  V  N  L  P  S  G  S  R  S  C  S  L  S  L  Y  Q  K  L  *  E  K  H  E  D  V  Y  I  S  S  K  I  L  I  D  S  V  V  R  I  T  R  H  H  C  S  A  F  L  I  F  F  C  D  *  R  N  R  L  D  Q  L  E  V  *  D  K  I  I  V  N  G  S  H  N  F  *  D  S  Y  H  R  N  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29808" stop="29858"/>
                    <exon start="30412" stop="30591"/>
                    <exon start="31539" stop="31614"/>
                    <exon start="32118" stop="32195"/>
                    <exon start="32947" stop="33032"/>
                    <exon start="33560" stop="33633"/>
                    <exon start="33936" stop="33981"/>
                    <exon start="34974" stop="35083"/>
                    <exon start="35446" stop="35620"/>
                    <exon start="36168" stop="36233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSTKSGTWKIPPTLKCQEYPLGVKIIPMESRTAKPFRTTNLIVFLPECNANEHDDGFIAHGEALIVDPGCKSSSYEQLKEIIAALPRKLVVFVTHHHNDHVDGLSVVQKYSPDARLLAHENTIRRIRKDDWSLPYVSVSGSEEICIGNQKLRIILAPGHTDGHMALLHVSTNSLIVGDHCVGQGSALLDSASGGNMQDYFQTTYKFIELSPHALIPMHGRTNMWPKHMLCGYLKNRRNRESTILMAIENGAKTLFDIVAYTYADVDRSLWFYASSNVRLHVDHLAVQNKLPSDFSLENFNRSCAEFAGMVHKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36588" stop="36821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLELWPLVAWLYHSPEKMNSSLGDANNSCSGRQISSRKLIYRLAPGHVLSHCTRSSRRSMKMFTLVVKYSLIVLCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="62520" PGL_stop="65202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62520" e_stop="62888"/>
            <exon e_start="63898" e_stop="64018"/>
            <exon e_start="64111" e_stop="64196"/>
            <exon e_start="64304" e_stop="64685"/>
            <exon e_start="64779" e_stop="64879"/>
            <exon e_start="64960" e_stop="65026"/>
            <exon e_start="65115" e_stop="65202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.375" e_score="0.946"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.395" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="62520" e_stop="62888" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.375">
            <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63898" e_stop="64018" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64111" e_stop="64196" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.904" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64304" e_stop="64685" e_length="382"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.395">
            <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64779" e_stop="64879" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64880" i_stop="64959" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64960" e_stop="65026" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.937">
            <gDNA_intron_boundary i_start="65027" i_stop="65114" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="65115" e_stop="65202" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62520" stop="62888"/>
              <exon start="63898" stop="64018"/>
              <exon start="64111" stop="64196"/>
              <exon start="64304" stop="64494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8622-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63921" stop="64018"/>
              <exon start="64111" stop="64196"/>
              <exon start="64304" stop="64685"/>
              <exon start="64779" stop="64879"/>
              <exon start="64960" stop="65026"/>
              <exon start="65115" stop="65202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAAACCAAAAAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAG : TAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCC : GATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAG : GTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG : GAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGA : GATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAG : GAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTG</gDNA_template>
            <first_frame> K  F  F  T  F  T  S  L  Y  V  F  S  A  F  P  F  H  N  Q  T  K  K  L  *  N  Q  *  Q  I  I  I  N  L  F  M  E  I  E  F  F  I  F  G  L  C  *  I  *  F  E  E  *  E  F  *  N  L  L  L  *  K  R  G  F  F  R  R  R  C  N  G  S  R  E  K  C  W  M  *  S  G  S  C  F  V  E  R  T  K  D  *  S  *  D  F  G  E  C  *  C  *  F  C  M  E  C  S  Y  *  L  *  K  A  C  *  F  R  P  E  S  C  *  Q  :  *  E  N  P  L  S  T  S  W  A  Y  L  V  G  A  K  R  Y  P  T  I  S  L  L  A  H  R  S  S  R  C  I  G  S  P  R  I  H  *  I   : R  *  C  S  R  A  P  F  L  Y  G  *  R  *  L  Q  E  V  *  R  Q  M  V  S  E  S  W  N  K  :  V  F  N  G  Y  T  K  L  *  S  *  C  H  T  E  V  Q  L  S  S  H  F  L  G  E  D  Y  Q  V  R  P  P  R  K  S  S  S  V  V  L  *  S  *  K  Q  L  S  R  L  S  E  C  Y  Q  R  G  T  W  F  L  P  Y  *  S  C  H  I  P  R  K  *  I  F  G  *  T  L  E  G  K  V  C  Q  S  H  F  W  P  V  D  T  S  Y  K  *  R  D  *  *  L  G  N  I  W  E  N  L  Q  T  *  Q  A  M  C  G  G  *  S  P  S  P  K  I  *  W  S  T   : G  K  W  R  C  S  S  L  R  C  C  *  Y  Y  S  K  S  S  S  S  R  S  M  E  C  F  D  C  L  *  K  S  S  R  :  D  S  S  E  F  S  N  Q  *  D  L  I  T  R  Q  Q  Q  S  S  H  S  S   : G  R  M  Q  G  S  S  I  H  G  S  P  C  T  C  R  S  R  L  I  *  T  H  R  T  R  N  *  L   </first_frame>
            <second_frame>  S  F  S  L  S  L  H  S  M  Y  S  L  H  F  H  F  T  I  K  P  K  N  Y  E  I  N  N  K  L  S  S  I  C  S  W  K  S  S  F  S  S  S  D  Y  V  K  F  D  S  K  N  E  N  F  R  I  Y  Y  Y  R  K  G  D  F  L  G  G  D  A  M  G  V  E  K  N  V  G  C  E  V  E  V  V  S  W  R  E  R  K  I  K  A  E  I  L  V  N  A  D  V  D  S  V  W  N  A  L  T  D  Y  E  R  L  A  D  F  V  P  N  L  V  S  S :   R  R  I  P  C  P  R  P  G  R  I  W  L  E  Q  R  G  I  Q  R  S  L  Y  W  H  I  E  A  R  V  V  L  D  L  Q  E  F  I  K  S  :  D  N  V  R  E  L  H  F  S  M  V  D  G  D  F  K  K  F  E  G  K  W  S  V  R  V  G  T  R :   S  S  T  A  I  L  S  Y  E  V  S  V  I  P  R  F  N  F  P  A  I  F  L  E  R  I  I  R  S  D  L  P  V  N  L  Q  A  L  S  C  R  A  E  N  S  Y  Q  G  Y  Q  N  V  T  K  E  E  P  G  S  Y  L  I  D  H  V  I  S  H  E  N  K  S  S  G  E  H  L  K  E  K  F  V  K  A  T  F  G  P  S  T  P  V  T  S  D  V  T  N  N  W  G  I  F  G  K  T  C  R  L  D  K  P  C  V  V  D  E  V  H  L  R  R  F  D  G  L  L  :  E  N  G  G  V  H  R  C  V  V  A  S  I  T  V  K  A  P  V  R  E  V  W  N  V  L  T  A  Y  E  S  L  P  E :   I  V  P  N  L  A  I  S  K  I  L  S  R  D  N  N  K  V  R  I  L  Q  :  E  G  C  K  G  L  L  Y  M  V  L  H  A  R  V  V  L  D  L  S  E  L  I  E  Q  E  I  S  F  </second_frame>
            <third_frame>   V  F  H  F  H  F  T  L  C  I  L  C  I  S  I  S  Q  S  N  Q  K  T  M  K  S  I  T  N  Y  H  Q  F  V  H  G  N  R  V  F  H  L  R  T  M  L  N  L  I  R  R  M  R  I  L  E  F  T  I  I  E  K  G  I  F  *  E  E  M  Q  W  E  *  R  K  M  L  D  V  K  W  K  L  F  R  G  E  N  E  R  L  K  L  R  F  W  *  M  L  M  L  I  L  Y  G  M  L  L  L  I  M  K  G  L  L  I  S  S  R  I  L  L  A   : V  G  E  S  L  V  H  V  L  G  V  F  G  W  S  K  E  V  S  N  D  L  S  I  G  T  *  K  L  A  L  Y  W  I  S  K  N  S  L  N  P :   I  M  F  A  S  S  I  S  L  W  L  T  V  T  S  R  S  L  K  A  N  G  Q  *  E  L  E  Q   : G  L  Q  R  L  Y  *  V  M  K  L  V  S  Y  R  G  S  T  F  Q  P  F  S  W  R  G  L  S  G  Q  T  S  P  *  I  F  K  R  C  P  V  E  L  K  T  V  I  K  V  I  R  M  L  P  K  R  N  L  V  L  T  L  L  I  M  S  Y  P  T  K  I  N  L  R  V  N  T  *  R  K  S  L  S  K  P  L  L  A  R  R  H  Q  L  Q  V  T  *  L  I  I  G  E  Y  L  G  K  L  A  D  L  T  S  H  V  W  W  M  K  S  I  S  E  D  L  M  V  Y  W :   K  M  E  V  F  I  V  A  L  L  L  V  L  Q  *  K  L  Q  F  A  K  Y  G  M  F  *  L  L  M  K  V  F  P   : R  *  F  R  I  *  Q  S  V  R  S  Y  H  E  T  T  T  K  F  A  F  F  R :   K  D  A  R  V  F  Y  T  W  F  S  M  H  V  S  F  *  T  Y  L  N  S  *  N  K  K  L  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62521" stop="62888"/>
                    <exon start="63898" stop="64018"/>
                    <exon start="64111" stop="64196"/>
                    <exon start="64304" stop="64685"/>
                    <exon start="64779" stop="64879"/>
                    <exon start="64960" stop="65026"/>
                    <exon start="65115" stop="65201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLSLHSMYSLHFHFTIKPKNYEINNKLSSICSWKSSFSSSDYVKFDSKNENFRIYYYRKGDFLGGDAMGVEKNVGCEVEVVSWRERKIKAEILVNADVDSVWNALTDYERLADFVPNLVSSRRIPCPRPGRIWLEQRGIQRSLYWHIEARVVLDLQEFIKSDNVRELHFSMVDGDFKKFEGKWSVRVGTRSSTAILSYEVSVIPRFNFPAIFLERIIRSDLPVNLQALSCRAENSYQGYQNVTKEEPGSYLIDHVISHENKSSGEHLKEKFVKATFGPSTPVTSDVTNNWGIFGKTCRLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVREVWNVLTAYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLSELIEQEISF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 6984 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2328 bytes was the average size of a spliced alignment
$ 7216 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3608 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:27:53
-->
