<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:36:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6602-2" ref_strand="+" ref_description="SGN-M6602-2 C2_At1g14140-2 [cosii_markers]">
      <seq>caagagttgaagaatgggccagcttcaaagatgagtgtttaaggtctataacactgatgcccctcaggcctggacagctcaatgaaagcccaagtgtttaacgatggccggaaagcccatacaacaaagatagccgtgacggcgatgtcggcaatggcggcggaaacggtgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcatctcgacggatatcagccgtccgagtagtggcggagatcttacgaaacgacggcattttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgcggaattctttggttcctgctgatcatactctttctctgtcaagcaaagccattattggtggaatatctggtgttattgctcaggttgtggcgagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatggtaagtcagggtctgcaacctcgatattgtgggccagttgatgctttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcatggtcccaaatgtccagagagcttttttagttaacatgggagaactagcgtgctatgatcatgcaaagcggtttgtgatcaataacaacatagcaaatgataatatatatgcacacactttatcatctataatgtcaggcctgtcagcaacaacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataatcaaagtaattgtaaatataaaaactcctacgattgtcttgtcaaaactattagagttgaaggactcaaagcattgtggaagggattctttcctacatgggcaagacttggcccttggcaatttgtattctgggtatcatatgagaaattccgacaaatcgctggtctctcttcattctaaccaattcatcacgctgagtgctgtataacacggtggagcaaaggaaaactgaggagacagagttctacttggaattattcagtataggcattagttaaagaatgcatttttcgggccgaattctgttgcagacaagaaactatttaagtggaaaaggacagagagacgaactcattatctaacgaattttgaactgtgcgtcatagagatttctatccaaaaggaattttcatttcttgtgattatgatcaatgaagaaaaactttgataaaatatatagatgaacccttttatcatctgatatatgaacagtaagatgcaagtcaataatatactctcttatattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10982" stop="7609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10682" g_stop="10221" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8269" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="1042" r_length="586" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8268" i_stop="8163" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.946" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8162" g_stop="7909" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1281" r_length="239" r_score="0.823"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1346" polyA_stop="1361"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-M6602-2" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>1302</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6602-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10682" e_stop="10221"/>
          <exon e_start="8854" e_stop="8269"/>
          <exon e_start="8162" e_stop="7909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAAGG-ATTTGTTTTTCTTGTGATTATGATCAATGTAGAAAGACTTTGATAATATTATATATAT</genome_strand>
        <mrna_strand>CAAGAGTTGAAGAATGGGCCAGCTTCAAAGA--TGAGTGTTTAAGGTCTATAACACTGATGCCCCTCAGGCCTGG---AC-AGCTCAATGAAAGCCCAAGTGTTTAACGATGGCCGGAAAGCCCATACAACAAAGATAGCCGTGACGGCGATGTCGGCAATGGCGGCGGAAACGGTGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCATCTCGACGGATATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCATTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGCGGAATTCTTTGGTTCCTGCTGATCATACTCTTTCTCTGTCAAGCAAAGCCATTATTGGTGGAATATCTGGTGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATGGTAAGTCAGGGTCTGCAACCTCGATATTGTGGGCCAGTTGATGCTTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCATGGTCCCAAATGTCCAGAGAGCTTTTTTAGTTAACATGGGAGAACTAGCGTGCTATGATCATGCAAAGCGGTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACTTTATCATCTATAATGTCAGGCCTGTCAGCAACAACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAATCAAAGTAATTGTAAATATAAAAACTCCTACGATTGTCTTGTCAAAACTATTAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCAAGACTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATCGCTGGTCTCTCTTCATTCTAACCAATTCATCACGCTGAGTGCTGTATAACACGGTGGAGCAAAG..........................................................................................................GAAAAC-TGAGGAGACAGAG--TTCTACTTGGAATTATTCAGTATAGGC---A-TTAGTTAAAGAATGCATTTTTCGGGCCGAATTCTGTTGCAGACAAGAAA--CTATTTAAGTGGAAAAGGACAGAGAGACGAACTCATTATCTAAC-GA--AT-T-TTGAACTGTG-CGTCATAGAGATTTCTATCCAAAAGGAATTTTCATTTCTTGTGATTATGATCAATGAAGAAAAACTTTGATAA-AATATATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6602" ref_strand="+" ref_description="SGN-M6602 C2_At1g14140 [cosii_markers]">
      <seq>aaagcccaagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcagttgcattacttcttgtgattcgttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataagcaagggaattgcaagtatagaaactcctacgattgtcttgtcaaaacggtcagagttgaaggactcaaagcattgtggaagggattctttcctacatgggctaggcttggcccttggcaatttgtattctgggtatcatatgagaaattccgacaaattgctggtctctcttcattctaaacaattcatcacgctgagtgctgtataacacagtgaagcaaaggttcgattttcaaattttgttccctttgattgatcttgagttatatctatgttgtatcttagtgtgtgttgagaagccaagtgtgcttctttactcccttttgtaggaatacttgggtagacagagtcttctacttggaattattcatcataggcgttagttagttaaagaatgtattctacgggccgaattctgtttcagacaagaaactctatttaagtggaaaaggacatagagacgaattcattatctaactcattatctatcgaataacgaactcatcgagatttctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10892" stop="7669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10592" g_stop="10221" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8877" g_stop="7969" g_length="909"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="1279" r_length="907" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1280" polyA_stop="1292"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-M6602" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1281</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10592" e_stop="10221"/>
          <exon e_start="8877" e_stop="7969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</genome_strand>
        <mrna_strand>AAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATTACTTCTTGTGATTC--GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8708" ref_strand="+" ref_description="SGN-M8708 C2_At5g15270 [cosii_markers]">
      <seq>ctgctttcacagaacacttgatacaggtttgctagacaaacaaaagggtggcacattcagctccttgacatggcaggccagaggaataactacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttgctgccaatgcgttattgcaagtacttatgcgggtgaaggccaatgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="56004" stop="51201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="55687" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="46" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53609" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="645" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="1041" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1296" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51573" g_stop="51501" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1369" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-M8708" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCACAGAACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTG</genome_strand>
        <mrna_strand>CTGCTTTCACAGAACACT................................................................................................................TGATACAGGTTTGCTAGACAAACAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGGTGAAGGCCAATGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2002" ref_strand="+" ref_description="SGN-M2002 T1436 [cos_markers]">
      <seq>tgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcttcttctgtaaaggagtttgcagttcgtttggtttgtccaactgagaatgtaggagctgtaattggcaaaggtggaggcattatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53938" stop="51640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53638" g_stop="53609" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="426" r_length="396" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51980" g_stop="51940" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="467" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-M2002" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53638" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCG</genome_strand>
        <mrna_strand>TGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCTTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAACTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGCATTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10682" PGL_stop="7909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10682" e_stop="10221"/>
            <exon e_start="8854" e_stop="8269"/>
            <exon e_start="8162" e_stop="7909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.937"/>
          <exon-intron don_prob="0.995" acc_prob="0.946" e_score="0.945"/>
          <exon-only e_score="0.823"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="10682" e_stop="10221" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="8854" e_stop="8269" e_length="586"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.946">
            <gDNA_intron_boundary i_start="8268" i_stop="8163" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.823">
            <gDNA_exon_boundary e_start="8162" e_stop="7909" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10682" stop="10221"/>
              <exon start="8854" stop="8269"/>
              <exon start="8162" stop="7909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6602-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAG : GAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAAGGATTTGTTTTTCTTGTGATTATGATCAATGTAGAAAGACTTTGATAATATTATATATAT</gDNA_template>
            <first_frame> Q  E  L  K  M  G  P  A  S  K  I  *  V  Y  M  V  Y  N  T  D  A  S  E  A  W  T  T  S  S  M  K  A  Q  E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K   : G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K  G  F  V  F  L  V  I  M  I  N  V  E  R  L  *  *  Y  Y  I  Y </first_frame>
            <second_frame>  K  S  *  R  W  A  R  L  Q  R  F  K  C  I  W  S  I  T  L  M  P  L  R  P  G  P  L  A  Q  *  K  P  K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  R :   L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  :  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q  K  D  L  F  F  L  *  L  *  S  M  *  K  D  F  D  N  I  I  Y   </second_frame>
            <third_frame>   R  V  E  D  G  P  G  F  K  D  L  S  V  Y  G  L  *  H  *  C  L  *  G  L  D  H  *  L  N  E  S  P  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R :   N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  R  I  C  F  S  C  D  Y  D  Q  C  R  K  T  L  I  I  L  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10646" stop="10221"/>
                    <exon start="8854" stop="8312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYMVYNTDASEAWTTSSMKAQEFNDGRRAHTTKLAVTAMSATAAETATFPVDLIKTRLQLHGESLVSSRRTSAVRVVAEILRNDGVLGLYKGLSPAIIRHMFYTPIRIVNYEFLRNFLVPADHTLSLSSKAIIGGISGVIAQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10592" e_stop="10221"/>
            <exon e_start="8877" e_stop="7969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10592" e_stop="10221" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="8877" e_stop="7969" e_length="909"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10592" stop="10221"/>
              <exon start="8877" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : TTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</gDNA_template>
            <first_frame> K  A  Q  E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  L  H  Y  F  L  *  F  R  L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  V  R  F  S  N  F  V  P  F  D  *  S  *  V  I  S  M  L  Y  L  S  V  C  *  E  A  K  C  A  S  L  L  P  F  V  G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K </first_frame>
            <second_frame>  K  P  K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  S :   C  I  T  S  C  D  S  G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R  F  D  F  Q  I  L  F  P  L  I  D  L  E  L  Y  L  C  C  I  L  V  C  V  E  K  P  S  V  L  L  Y  S  L  L  *  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q   </second_frame>
            <third_frame>   S  P  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : V  A  L  L  L  V  I  Q  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K  G  S  I  F  K  F  C  S  L  *  L  I  L  S  Y  I  Y  V  V  S  *  C  V  L  R  S  Q  V  C  F  F  T  P  F  C  R  N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10281" stop="10221"/>
                    <exon start="8877" stop="8312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYTFSVKQSYYWWNIWSYCSVALLLVIQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="55704" PGL_stop="51501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55704" e_stop="55687"/>
            <exon e_start="55574" e_stop="55547"/>
            <exon e_start="54207" e_stop="53609"/>
            <exon e_start="52473" e_stop="52078"/>
            <exon e_start="51980" e_stop="51726"/>
            <exon e_start="51573" e_stop="51501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55704" e_stop="55687" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55574" e_stop="55547" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54207" e_stop="53609" e_length="599"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52473" e_stop="52078" e_length="396"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51980" e_stop="51726" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="51573" e_stop="51501" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53638" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTTTCACAGAACACT : TGATACAGGTTTGCTAGACAAACAAAAG : GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG : ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG : ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG : ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTG</gDNA_template>
            <first_frame> L  L  S  Q  N  T  :  *  Y  R  F  A  R  Q  T  K   : G  W  H  I  Q  L  L  D  M  A  G  Q  R  N  N  Y  G  K  R  M  Q  S  E  S  D  Y  S  R  S  D  G  S  K  R  R  T  P  T  D  E  K  E  S  N  S  I  G  P  E  D  T  V  F  R  Y  L  C  P  T  G  K  I  G  S  I  I  G  V  G  G  D  I  A  K  Q  L  R  T  E  T  N  S  K  I  R  I  S  E  T  I  P  G  C  E  E  R  V  V  T  I  Y  S  G  S  E  E  T  N  I  S  E  D  T  G  D  L  I  S  P  A  Q  D  A  L  F  R  V  H  D  R  V  L  A  E  E  L  R  M  D  E  D  L  E  D  H  Q  I  T  V  R  M  I  V  P  S  D  Q  I  G  C  V  I  G  N  A  G  Q  V  I  Q  N  L  R  S  E  T  G  A  Q  I  R  V  L  S  S  E  H  L  P  P  C  A  L  N  S  D  E  L  L  Q  :  I  T  G  E  V  A  V  V  K  R  A  L  Y  Q  V  A  A  R  L  H  D  N  P  S  R  S  Q  H  Q  L  L  S  S  P  S  I  Y  R  S  G  A  G  L  V  N  P  H  A  G  S  Q  V  M  G  V  T  S  L  M  G  P  Y  A  S  Y  K  S  D  G  R  S  R  S  S  S  V  K  E  F  A  V  R  L  V  C  P  I  E  N  V  G  A  V  I  G  K  G  G  G  V  I  K  Q  L  R  Q  E  S  G  A  S  I  K  V  D  S  A  A  A  E  G  D  D  C  I  I  F  V  S  A  K  E  :  T  F  E  D  Q  S  P  T  I  D  A  T  M  R  L  Q  P  R  S  S  E  K  T  E  K  E  S  G  D  A  I  L  T  T  R  L  L  V  P  S  S  R  V  G  C  L  I  G  K  G  G  S  I  I  T  E  M  R  N  S  T  R  A  S  I  R  V  L  S  K  E  N  H  P  K  V  A  S  V  D  D  E  M  V  Q  :  I  T  G  D  A  N  V  A  A  N  A  L  L  Q  V  L  M  R  L  R  A  N  A  F  </first_frame>
            <second_frame>  C  F  H  R  T  L :   D  T  G  L  L  D  K  Q  K  :  G  G  T  F  S  S  L  T  W  Q  A  R  G  I  T  T  V  R  E  C  N  R  N  P  T  I  P  G  V  M  E  V  R  G  G  L  Q  L  M  R  R  N  Q  I  P  L  D  Q  R  I  L  F  F  V  I  Y  A  P  Q  E  K  L  E  V  S  L  E  L  V  G  T  L  Q  N  N  *  G  L  K  L  I  Q  R  L  G  L  V  R  P  Y  L  A  A  R  S  V  L  *  L  F  I  V  E  V  K  K  L  I  S  L  K  I  L  V  T  *  F  H  L  L  K  M  L  Y  L  G  C  M  T  E  S  L  L  K  S  C  V  W  T  K  I  W  R  I  I  R  L  L  *  G  *  L  S  H  Q  I  R  *  V  V  *  *  G  M  L  D  K  *  S  R  I  Y  E  V  K  Q  V  R  R  F  G  C  *  A  V  S  T  C  P  L  V  L  *  T  R  M  S  F  S  R :   *  P  V  K  L  Q  L  L  R  E  H  F  I  K  *  Q  H  A  S  M  I  I  H  Q  G  P  N  I  S  C  C  R  H  P  A  Y  I  G  L  V  L  D  L  *  I  L  M  L  V  A  K  S  W  V  *  H  H  *  W  V  L  T  Q  V  T  K  V  M  V  E  V  D  R  L  L  *  R  S  L  Q  F  V  W  F  V  Q  L  R  M  *  E  L  *  L  A  K  V  E  E  L  S  N  S  *  D  R  N  Q  V  H  L  L  K  S  I  V  L  R  L  R  E  M  I  A  L  Y  L  Y  Q  Q  R  R :   H  L  K  I  N  P  L  P  S  M  Q  Q  C  V  C  N  Q  E  V  V  R  K  L  K  K  N  P  V  M  L  F  L  R  L  A  C  L  Y  L  V  H  E  L  D  A  L  L  V  K  V  V  P  L  S  L  R  C  G  I  P  Q  G  Q  A  S  A  F  F  R  R  K  I  I  Q  K  W  H  P  *  M  T  R  W  C  R :   L  L  E  M  L  M  L  L  P  M  R  Y  C  K  Y  L  C  G  *  G  P  M  H  L </second_frame>
            <third_frame>   A  F  T  E  H   : L  I  Q  V  C  *  T  N  K  R :   V  A  H  S  A  P  *  H  G  R  P  E  E  *  L  R  *  E  N  A  I  G  I  R  L  F  Q  E  *  W  K  *  E  E  D  S  N  *  *  E  G  I  K  F  H  W  T  R  G  Y  C  F  S  L  F  M  P  H  R  K  N  W  K  Y  H  W  S  W  W  G  H  C  K  T  I  E  D  *  N  *  F  K  D  *  D  *  *  D  H  T  W  L  R  G  A  C  C  N  Y  L  *  W  K  *  R  N  *  Y  L  *  R  Y  W  *  P  D  F  T  C  S  R  C  S  I  *  G  A  *  Q  S  P  C  *  R  A  A  Y  G  R  R  S  G  G  S  S  D  Y  C  K  D  D  C  P  I  R  S  D  R  L  C  D  R  E  C  W  T  S  D  P  E  F  T  K  *  N  R  C  A  D  S  G  V  K  Q  *  A  L  A  P  L  C  S  K  L  G  *  A  S  P   : D  N  R  *  S  C  S  C  *  E  S  T  L  S  S  S  S  T  P  P  *  *  S  I  K  V  P  T  S  V  A  V  V  T  Q  H  I  *  V  W  C  W  T  C  E  S  S  C  W  *  P  S  H  G  C  D  I  I  D  G  S  L  R  K  L  Q  K  *  W  *  K  *  I  V  F  C  K  G  V  C  S  S  F  G  L  S  N  *  E  C  R  S  C  N  W  Q  R  W  R  S  Y  Q  T  A  K  T  G  I  R  C  I  Y  *  S  R  *  C  C  G  *  G  R  *  L  H  Y  I  C  I  S  K  G   : D  I  *  R  S  I  P  Y  H  R  C  N  N  A  F  A  T  K  K  *  *  E  N  *  K  R  I  R  *  C  Y  S  Y  D  S  P  A  C  T  *  F  T  S  W  M  P  Y  W  *  R  W  F  H  Y  H  *  D  A  E  F  H  K  G  K  H  P  R  S  F  E  G  K  S  S  K  S  G  I  R  R  *  R  D  G  A   : D  Y  W  R  C  *  C  C  C  Q  C  V  I  A  S  T  Y  A  V  E  G  Q  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55571" stop="55547"/>
                    <exon start="54207" stop="53609"/>
                    <exon start="52473" stop="52078"/>
                    <exon start="51980" stop="51726"/>
                    <exon start="51573" stop="51502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFARQTKGWHIQLLDMAGQRNNYGKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETNISEDTGDLISPAQDALFRVHDRVLAEELRMDEDLEDHQITVRMIVPSDQIGCVIGNAGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEVAVVKRALYQVAARLHDNPSRSQHQLLSSPSIYRSGAGLVNPHAGSQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPIENVGAVIGKGGGVIKQLRQESGASIKVDSAAAEGDDCIIFVSAKETFEDQSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIITEMRNSTRASIRVLSKENHPKVASVDDEMVQITGDANVAANALLQVLMRLRANAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 8608 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 7048 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3524 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:36:48
-->
