<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:31:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342844" ref_strand="+" ref_description="SGN-E342844 [cTOF-7-F14]">
      <seq>aaaaaccggtggccaccgtgcacggctgagcgactgagaaacaaagaatatgctgacatttttctcagccggaaccggtggtgctcctccgccagcatttctactaactggaaccaatttgaaatgctcttattcgaggcgtttaacgatcagggcaggtgaatttccggattttcttcctatacaaatcgagaatatcaaagacccttatgctagaaagctggcttcacgaattgagagaataccagtaaacttatcgaagggatgcatcatgagtagttgtgtgaagccaaaagaacagacagaggccaatccagttgtgcttctccatggttttgatagctcatgtttagagtggaggtacactcttccaatgcttgaggatgctggattggagacatgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacccacatcaagaagccaatggtacttgttggacctagtcttggatctgctgttgctattgacttttctgttaaatatccagaagctgttgataggctggttttaattgatgcaagtgtttacgcggaaagtacaggaaaccttgcaaccttacccaagcagtagcttatgctggggnttacttgttgaaaagtcttccacttcgcttatatgcaacttcattagctttcaatggcttaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17371" stop="20770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17671" g_stop="17917" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19040" g_stop="19134" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="342" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19214" g_stop="19311" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19426" g_stop="19475" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="490" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19928" g_stop="20023" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="586" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20024" i_stop="20130" i_length="107">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20131" g_stop="20220" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="675" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20221" i_stop="20403" i_length="183">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20404" g_stop="20470" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="742" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E342844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17671" e_stop="17917"/>
          <exon e_start="19040" e_stop="19134"/>
          <exon e_start="19214" e_stop="19311"/>
          <exon e_start="19426" e_stop="19475"/>
          <exon e_start="19928" e_stop="20023"/>
          <exon e_start="20131" e_stop="20220"/>
          <exon e_start="20404" e_stop="20470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCAGTAAGTTTTTTATTGCTGCTGTCTTTTTTGGGGTTAATTTCTAGATAGTTTTCTGTGTTTTCTCAAGCAAGTAGTAGAATTTTTTAAGTGCATTAAGAATTGTGATTCAATTGGGGGAAAATTCTCTACTTTTTATGAAATGGGTTCTGTTCTGATGAGTAAAGTTTTGTTCTTTTGGATTATATTATCACAGAGGTAGAAAAATCGAAATAAGGAAGTAAAGAATGTTTTTGAATCTTGTGGTTTCAAGCTAAAAATATGCTGAATGTACAAAAAAAAATGTCACTTAATCTTATAAAGTTGAAATTAAAGTTTTCATATTCTTTTTGAAACGGAAGTAGAAATTTAGAACCTAAAATCAGTAGCACAAGATTTGTGCATGGATGCAGGTACTCATTGCAGCTATAGGGGTTACCTTTATGTCTCTGCATGTCGATGTTAGATATGGATTAGGTTACAAGGAACGATAGAACTCTTATTTTTACTTTTTTATCTTCTTAAATTGTTCTCATTCCAGCTCATTTTATGACTGTATTTAATTGAACCTAGAATCTGAAGATGCTAATTTGACTTAAATATTTTTTGGCGGTAGTGCAAGAAGATAATTCAGTAATTGTTAAAAAGTTGTTTTGATTTAGGTAACATCCCAGTCTGTAATTTAGATAGCTCAATGAACTTTATTTCTTGAAAGCAGTATAGAAGTGGCATGGTATCAAACATTTCAGGACATCCCTAAAATGGAAAGAGTATCATATATTTGGGATATCCATGATTTTAAGACTTTGGGTGCAGACTACTACTGGACACTACTTTGTGATGATGTGTGCTGACTTAGAATGAGTGTTATCTCTTATAAGTATTCCCCTGTTCACACACACAGTTGGAACAAAATGGAGCGGGTGTGAGTGCACCCATTGCGGTAGTGTACCCGCTGTCATAGAGGTGTCCACTCATCATATGCAACTTAATCATTCTTTTCTTTTATGTATTCTGTTCTTATAATCCTAACAAAGTCACATATCTAGATATATTGCACTGGATCGAATCAATTAACTCTTTCTTTATAAAGTTCTGGGTACTGCCTTTGTTTGATGGTCCAGCTTCATTGCTGGTTCATTTTAGGTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAGGTGTGCCTCATGCTACGCTATGAATTTTGATCACTTTCTCTTGCCATGCTCCTGTTGTTCATTATGCCTCATTGTTCAGCTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAGGTATGTTATATCTTGTTATAGCTTTTTCTCAGTTCTTTATTTTTCAAAAAGATTCTGCAAACAAAAACGAAGACTTGCTCATGGTTTGTATTTTTTGTTTCCTGTGATATTAAGGAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACGTACTGATTCCGGAATATATGTTCTAACCTAGTGCATACGAACTTTGAAAGGTTGGAATTAGTATCTTTCAACTTTCATTACACATTCTGATAAATGTGAAGTTACATCTAAGTTCAAAATTAAGGTAAATCTCTCAATCTTTTTTCCTAGTAGTGTAACTATAATACTTATGCAGGGTCATGTACATAGTTATGCCTCATTGTGCATTGTGCAGTGGTATGATATTACAGTTATGAAGCATTAAAAAGGGGCATCCTTGCTTACTTGGCACAGGTCTACGCTTAAAAATATTGAAGTAGTGTTTCTTTGTCTAGCTGTCTGATAAGGGCCAGGCATATCTTCCTGGCCTGGCCTTAAGACCATGTTGAACATTTACTGGGATATTACATTTCTTAAAAAAAATTCAGCTTACATGTTTTGAAATTCGCTGTCTTGTTTGTCTTTCAGCTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGGGTGAGTTACCTCCTATTCCTCTTAAAAAAAAAGAGTACATTCTACGCCAGATTGGATGTTTGATGTAACATTACATATATGTTATAATGTGTAGTTTATTAGCAACTTGTTTTCTGATTAGCAAACTCTAAAAGTAAAGAAGAGAAACTTTTGCCATTGTTAATGAGAAATAACCTGCTGCAGGTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCAT</genome_strand>
        <mrna_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG...............................................................................CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG..................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCT...........................................................................................................GTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAAGTACAGGAAACCTTGCAACCTTACCC-AAGCAGTAGCTTATGCTGGG.......................................................................................................................................................................................GNTTACTTGTTGAAAAGTCTTCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343844" ref_strand="+" ref_description="SGN-E343844 [cTOF-12-M10]">
      <seq>aaaaaccggtggccaccgtgcacggctgagcgactgagaaacaaagaatatgctgacatttttctcagccggaaccggtggtgctcctccgccagcatttctactaactggaaccaatttgaaatgctcttattcgaggcgtttaacgatcagggcaggtgaatttccggattttcttcctatacaaatcgagaatatcaaagacccttatgctagaaagctggcttcacgaattgagagaataccagtaaacttatcgaagggatgcatcatgagtagttgtgtgaagccaaaagaacagacagaggccaatccagttgtgcttctccatggttttgatagctcatgtttagagtggaggtacactcttccaatgcttgaggatgctggattggagacatgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacccacatcaagaagccaatggtacttgttggacctagtcttggatctgctgttgctattgacttttctgttaaatatccagaagctgttgatgggctggttttaattgatgcaaagtgtttacgcggnaaaggtacagaaaccttgcaaccttacccaaagcagtagcttatgctgggggtttactttgtgaaaagtctcccacttcgcttatatgcaacttcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17371" stop="20751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17671" g_stop="17917" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19040" g_stop="19134" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="342" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19214" g_stop="19311" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19426" g_stop="19475" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="490" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19928" g_stop="20023" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="586" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20024" i_stop="20130" i_length="107">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20131" g_stop="20220" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="678" r_length="92" r_score="0.911"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20221" i_stop="20402" i_length="182">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20403" g_stop="20451" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="727" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E343844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17671" e_stop="17917"/>
          <exon e_start="19040" e_stop="19134"/>
          <exon e_start="19214" e_stop="19311"/>
          <exon e_start="19426" e_stop="19475"/>
          <exon e_start="19928" e_stop="20023"/>
          <exon e_start="20131" e_stop="20220"/>
          <exon e_start="20403" e_stop="20451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCAGTAAGTTTTTTATTGCTGCTGTCTTTTTTGGGGTTAATTTCTAGATAGTTTTCTGTGTTTTCTCAAGCAAGTAGTAGAATTTTTTAAGTGCATTAAGAATTGTGATTCAATTGGGGGAAAATTCTCTACTTTTTATGAAATGGGTTCTGTTCTGATGAGTAAAGTTTTGTTCTTTTGGATTATATTATCACAGAGGTAGAAAAATCGAAATAAGGAAGTAAAGAATGTTTTTGAATCTTGTGGTTTCAAGCTAAAAATATGCTGAATGTACAAAAAAAAATGTCACTTAATCTTATAAAGTTGAAATTAAAGTTTTCATATTCTTTTTGAAACGGAAGTAGAAATTTAGAACCTAAAATCAGTAGCACAAGATTTGTGCATGGATGCAGGTACTCATTGCAGCTATAGGGGTTACCTTTATGTCTCTGCATGTCGATGTTAGATATGGATTAGGTTACAAGGAACGATAGAACTCTTATTTTTACTTTTTTATCTTCTTAAATTGTTCTCATTCCAGCTCATTTTATGACTGTATTTAATTGAACCTAGAATCTGAAGATGCTAATTTGACTTAAATATTTTTTGGCGGTAGTGCAAGAAGATAATTCAGTAATTGTTAAAAAGTTGTTTTGATTTAGGTAACATCCCAGTCTGTAATTTAGATAGCTCAATGAACTTTATTTCTTGAAAGCAGTATAGAAGTGGCATGGTATCAAACATTTCAGGACATCCCTAAAATGGAAAGAGTATCATATATTTGGGATATCCATGATTTTAAGACTTTGGGTGCAGACTACTACTGGACACTACTTTGTGATGATGTGTGCTGACTTAGAATGAGTGTTATCTCTTATAAGTATTCCCCTGTTCACACACACAGTTGGAACAAAATGGAGCGGGTGTGAGTGCACCCATTGCGGTAGTGTACCCGCTGTCATAGAGGTGTCCACTCATCATATGCAACTTAATCATTCTTTTCTTTTATGTATTCTGTTCTTATAATCCTAACAAAGTCACATATCTAGATATATTGCACTGGATCGAATCAATTAACTCTTTCTTTATAAAGTTCTGGGTACTGCCTTTGTTTGATGGTCCAGCTTCATTGCTGGTTCATTTTAGGTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAGGTGTGCCTCATGCTACGCTATGAATTTTGATCACTTTCTCTTGCCATGCTCCTGTTGTTCATTATGCCTCATTGTTCAGCTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAGGTATGTTATATCTTGTTATAGCTTTTTCTCAGTTCTTTATTTTTCAAAAAGATTCTGCAAACAAAAACGAAGACTTGCTCATGGTTTGTATTTTTTGTTTCCTGTGATATTAAGGAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACGTACTGATTCCGGAATATATGTTCTAACCTAGTGCATACGAACTTTGAAAGGTTGGAATTAGTATCTTTCAACTTTCATTACACATTCTGATAAATGTGAAGTTACATCTAAGTTCAAAATTAAGGTAAATCTCTCAATCTTTTTTCCTAGTAGTGTAACTATAATACTTATGCAGGGTCATGTACATAGTTATGCCTCATTGTGCATTGTGCAGTGGTATGATATTACAGTTATGAAGCATTAAAAAGGGGCATCCTTGCTTACTTGGCACAGGTCTACGCTTAAAAATATTGAAGTAGTGTTTCTTTGTCTAGCTGTCTGATAAGGGCCAGGCATATCTTCCTGGCCTGGCCTTAAGACCATGTTGAACATTTACTGGGATATTACATTTCTTAAAAAAAATTCAGCTTACATGTTTTGAAATTCGCTGTCTTGTTTGTCTTTCAGCTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGC-AAGTGTTTACGCGG--AAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGGGTGAGTTACCTCCTATTCCTCTTAAAAAAAAAGAGTACATTCTACGCCAGATTGGATGTTTGATGTAACATTACATATATGTTATAATGTGTAGTTTATTAGCAACTTGTTTTCTGATTAGCAAACTCTAAAAGTAAAGAAGAGAAACTTTTGCCATTGTTAATGAGAAATAACCTGCTGCAGGTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTA</genome_strand>
        <mrna_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG...............................................................................CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG..................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCT...........................................................................................................GTTGATGGGCTGGTTTTAATTGATGCAAAGTGTTTACGCGGNAAAGGTACA-GAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG......................................................................................................................................................................................GGTTTACTTTGTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366988" ref_strand="+" ref_description="SGN-E366988 [cLPT-6-B23]">
      <seq>cggtggccaccgtgcacggctgagcgactgacaaacaaagaatatgctgacatttttctcagccggaaccggtggtgctcctccgccagcatttctactaactggaaccaatttgaaatgctcttattcgaggcgtttaacgatcagggcaggtgaatttccggattttcttcctatacaaatcgagaatatcaaagacccttatgctagaaagctggcttcacgaattgagagaataccagtaaacttatcgaagggatgcatcatgagtagttgtgtgaagccaaaagaacagacagaggccaatccagttgtgcttctccatggttttgatagctcatgtttagagtggaggtacactcttccaatgcttgaggatgctggattggagacatgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgcaagcatctttaccagctgtggtctacccacatcaagaagccaatggtacttgttggacctagtcttggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17377" stop="20284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17677" g_stop="17917" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19040" g_stop="19134" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="336" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19214" g_stop="19311" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="434" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19426" g_stop="19475" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19928" g_stop="19984" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="541" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E366988" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17677" e_stop="17917"/>
          <exon e_start="19040" e_stop="19134"/>
          <exon e_start="19214" e_stop="19311"/>
          <exon e_start="19426" e_stop="19475"/>
          <exon e_start="19928" e_stop="19984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCAGTAAGTTTTTTATTGCTGCTGTCTTTTTTGGGGTTAATTTCTAGATAGTTTTCTGTGTTTTCTCAAGCAAGTAGTAGAATTTTTTAAGTGCATTAAGAATTGTGATTCAATTGGGGGAAAATTCTCTACTTTTTATGAAATGGGTTCTGTTCTGATGAGTAAAGTTTTGTTCTTTTGGATTATATTATCACAGAGGTAGAAAAATCGAAATAAGGAAGTAAAGAATGTTTTTGAATCTTGTGGTTTCAAGCTAAAAATATGCTGAATGTACAAAAAAAAATGTCACTTAATCTTATAAAGTTGAAATTAAAGTTTTCATATTCTTTTTGAAACGGAAGTAGAAATTTAGAACCTAAAATCAGTAGCACAAGATTTGTGCATGGATGCAGGTACTCATTGCAGCTATAGGGGTTACCTTTATGTCTCTGCATGTCGATGTTAGATATGGATTAGGTTACAAGGAACGATAGAACTCTTATTTTTACTTTTTTATCTTCTTAAATTGTTCTCATTCCAGCTCATTTTATGACTGTATTTAATTGAACCTAGAATCTGAAGATGCTAATTTGACTTAAATATTTTTTGGCGGTAGTGCAAGAAGATAATTCAGTAATTGTTAAAAAGTTGTTTTGATTTAGGTAACATCCCAGTCTGTAATTTAGATAGCTCAATGAACTTTATTTCTTGAAAGCAGTATAGAAGTGGCATGGTATCAAACATTTCAGGACATCCCTAAAATGGAAAGAGTATCATATATTTGGGATATCCATGATTTTAAGACTTTGGGTGCAGACTACTACTGGACACTACTTTGTGATGATGTGTGCTGACTTAGAATGAGTGTTATCTCTTATAAGTATTCCCCTGTTCACACACACAGTTGGAACAAAATGGAGCGGGTGTGAGTGCACCCATTGCGGTAGTGTACCCGCTGTCATAGAGGTGTCCACTCATCATATGCAACTTAATCATTCTTTTCTTTTATGTATTCTGTTCTTATAATCCTAACAAAGTCACATATCTAGATATATTGCACTGGATCGAATCAATTAACTCTTTCTTTATAAAGTTCTGGGTACTGCCTTTGTTTGATGGTCCAGCTTCATTGCTGGTTCATTTTAGGTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAGGTGTGCCTCATGCTACGCTATGAATTTTGATCACTTTCTCTTGCCATGCTCCTGTTGTTCATTATGCCTCATTGTTCAGCTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAGGTATGTTATATCTTGTTATAGCTTTTTCTCAGTTCTTTATTTTTCAAAAAGATTCTGCAAACAAAAACGAAGACTTGCTCATGGTTTGTATTTTTTGTTTCCTGTGATATTAAGGAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACGTACTGATTCCGGAATATATGTTCTAACCTAGTGCATACGAACTTTGAAAGGTTGGAATTAGTATCTTTCAACTTTCATTACACATTCTGATAAATGTGAAGTTACATCTAAGTTCAAAATTAAGGTAAATCTCTCAATCTTTTTTCCTAGTAGTGTAACTATAATACTTATGCAGGGTCATGTACATAGTTATGCCTCATTGTGCATTGTGCAGTGGTATGATATTACAGTTATGAAGCATTAAAAAGGGGCATCCTTGCTTACTTGGCACAGGTCTACGCTTAAAAATATTGAAGTAGTGTTTCTTTGTCTAGCTGTCTGATAAGGGCCAGGCATATCTTCCTGGCCTGGCCTTAAGACCATGTTGAACATTTACTGGGATATTACATTTCTTAAAAAAAATTCAGCTTACATGTTTTGAAATTCGCTGTCTTGTTTGTCTTTCAGCTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCT</genome_strand>
        <mrna_strand>CGGTGGCCACCGTGCACGGCTGAGCGACTGACAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG...............................................................................CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG..................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGCAAGCATCTTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340644" ref_strand="+" ref_description="SGN-E340644 [cTOF-1-O2]">
      <seq>aagaatatgctgacatttttctcagccggaaccggtggtgctcctccgccagcatttctactaactggaaccaatttgaaatgctcttattcgaggcgtttaacgatcagggcaggtgaatttccggattttcttcctatacaaatcgagaatatcaaagacccttatgctagaaagctggcttcacgaattgagagaataccagtaaacttatcgaagggatgcatcatgagtagttgtgtgaagccaaaagaacagacagaggccaatccagttgtgcttctccatggttttgatagctcatgtttagagtggaggtacactcttccaatgcttgaggatgctggattggagacatgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacccacatcaagaagccaatggtacttgttggacctagtcttggatctgctgttgctattgacttttctgttaaatatccagaagctgttgataggctggttttaattgatgcaagtgtttacgcggaaggtacaggaaaccttgcaaccttacccaaagcagtagcttatgctggggtttacttgtttgaaaagtctcccacttcgcttatatgcaacttcattagctttcaatggcttaccatttagtacctgcatagactggactaatattggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17414" stop="20798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="17917" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19040" g_stop="19134" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="299" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19214" g_stop="19311" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19426" g_stop="19475" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="447" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19928" g_stop="20023" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="543" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20024" i_stop="20130" i_length="107">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20131" g_stop="20220" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="633" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20221" i_stop="20403" i_length="183">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20404" g_stop="20496" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="727" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20497" i_stop="20622" i_length="126">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20623" g_stop="20630" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="735" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E340644" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="17917"/>
          <exon e_start="19040" e_stop="19134"/>
          <exon e_start="19214" e_stop="19311"/>
          <exon e_start="19426" e_stop="19475"/>
          <exon e_start="19928" e_stop="20023"/>
          <exon e_start="20131" e_stop="20220"/>
          <exon e_start="20404" e_stop="20496"/>
          <exon e_start="20623" e_stop="20630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCAGTAAGTTTTTTATTGCTGCTGTCTTTTTTGGGGTTAATTTCTAGATAGTTTTCTGTGTTTTCTCAAGCAAGTAGTAGAATTTTTTAAGTGCATTAAGAATTGTGATTCAATTGGGGGAAAATTCTCTACTTTTTATGAAATGGGTTCTGTTCTGATGAGTAAAGTTTTGTTCTTTTGGATTATATTATCACAGAGGTAGAAAAATCGAAATAAGGAAGTAAAGAATGTTTTTGAATCTTGTGGTTTCAAGCTAAAAATATGCTGAATGTACAAAAAAAAATGTCACTTAATCTTATAAAGTTGAAATTAAAGTTTTCATATTCTTTTTGAAACGGAAGTAGAAATTTAGAACCTAAAATCAGTAGCACAAGATTTGTGCATGGATGCAGGTACTCATTGCAGCTATAGGGGTTACCTTTATGTCTCTGCATGTCGATGTTAGATATGGATTAGGTTACAAGGAACGATAGAACTCTTATTTTTACTTTTTTATCTTCTTAAATTGTTCTCATTCCAGCTCATTTTATGACTGTATTTAATTGAACCTAGAATCTGAAGATGCTAATTTGACTTAAATATTTTTTGGCGGTAGTGCAAGAAGATAATTCAGTAATTGTTAAAAAGTTGTTTTGATTTAGGTAACATCCCAGTCTGTAATTTAGATAGCTCAATGAACTTTATTTCTTGAAAGCAGTATAGAAGTGGCATGGTATCAAACATTTCAGGACATCCCTAAAATGGAAAGAGTATCATATATTTGGGATATCCATGATTTTAAGACTTTGGGTGCAGACTACTACTGGACACTACTTTGTGATGATGTGTGCTGACTTAGAATGAGTGTTATCTCTTATAAGTATTCCCCTGTTCACACACACAGTTGGAACAAAATGGAGCGGGTGTGAGTGCACCCATTGCGGTAGTGTACCCGCTGTCATAGAGGTGTCCACTCATCATATGCAACTTAATCATTCTTTTCTTTTATGTATTCTGTTCTTATAATCCTAACAAAGTCACATATCTAGATATATTGCACTGGATCGAATCAATTAACTCTTTCTTTATAAAGTTCTGGGTACTGCCTTTGTTTGATGGTCCAGCTTCATTGCTGGTTCATTTTAGGTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAGGTGTGCCTCATGCTACGCTATGAATTTTGATCACTTTCTCTTGCCATGCTCCTGTTGTTCATTATGCCTCATTGTTCAGCTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAGGTATGTTATATCTTGTTATAGCTTTTTCTCAGTTCTTTATTTTTCAAAAAGATTCTGCAAACAAAAACGAAGACTTGCTCATGGTTTGTATTTTTTGTTTCCTGTGATATTAAGGAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACGTACTGATTCCGGAATATATGTTCTAACCTAGTGCATACGAACTTTGAAAGGTTGGAATTAGTATCTTTCAACTTTCATTACACATTCTGATAAATGTGAAGTTACATCTAAGTTCAAAATTAAGGTAAATCTCTCAATCTTTTTTCCTAGTAGTGTAACTATAATACTTATGCAGGGTCATGTACATAGTTATGCCTCATTGTGCATTGTGCAGTGGTATGATATTACAGTTATGAAGCATTAAAAAGGGGCATCCTTGCTTACTTGGCACAGGTCTACGCTTAAAAATATTGAAGTAGTGTTTCTTTGTCTAGCTGTCTGATAAGGGCCAGGCATATCTTCCTGGCCTGGCCTTAAGACCATGTTGAACATTTACTGGGATATTACATTTCTTAAAAAAAATTCAGCTTACATGTTTTGAAATTCGCTGTCTTGTTTGTCTTTCAGCTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGGGTGAGTTACCTCCTATTCCTCTTAAAAAAAAAGAGTACATTCTACGCCAGATTGGATGTTTGATGTAACATTACATATATGTTATAATGTGTAGTTTATTAGCAACTTGTTTTCTGATTAGCAAACTCTAAAAGTAAAGAAGAGAAACTTTTGCCATTGTTAATGAGAAATAACCTGCTGCAGGTTTACTTG-TTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAATGTAAGTTTGACCCTTTGATCTTTTTAGAAACCTTAAAGTCATGGAGATCAGATATTCAAAATGTGCTTCTGGCATATTTTTATTCTCTTTTGTTTTACACTTCTGATTATCTGGTTTTCTATCCAGATTGGCCG</genome_strand>
        <mrna_strand>AAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG...............................................................................CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG..................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCT...........................................................................................................GTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG.......................................................................................................................................................................................GTTTACTTGTTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAAT..............................................................................................................................ATTGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338858" ref_strand="+" ref_description="SGN-E338858 [cTOE-21-K21]">
      <seq>tcggcacgagggcgtgttcatctttaccagctgtggtctctcacatcaagaagccaatggtacttggtggacctagtcttggatctgctgttgctattgacttttctgttaaatatccagaagctgtaagttcattcggtaacttaggatccctgttcagatgttgtaaattactttcctgtatgaagaaggtattattttatgcttgcttcaagtagctttactttatcaggttgataggctggttttaattgatgcaagtgtttacgcggaaggtacaggaaaccttgcaaccttacccaaagcagtagcttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19618" stop="20517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19928" g_stop="20217" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="319" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E338858" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19928" e_stop="20217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCT</genome_strand>
        <mrna_strand>CTGTGGTCT-CTCACATCAAGAAGCCAATGGTACTTGGTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734214" ref_strand="+" ref_description="SGN-E734214 [LB12AD01]">
      <seq>ggtacaggaaaccttgcaaccttacccaaagcagtagcttatgctggggtttacttgttgaaaagtctcccacttcgcttatatgcaacttcattagctttcaatggcttaccatttagtacctgcatagactggactaatattggccgcttacattgttcattaccttggtgggaggatgcattggtgaatttcatgatcagtggaggttacaatgtcatttctcagatagaacatgtcaagcagaaaacactgataatttggggtgaagatgatcagattattgacaacaagcttgcagtgagattgcattgtgaacttccaaatgcaattctacgccaaataccaaaatgtggccatatccctcatgtggagaagcctgatgctgtctccaggttgatagcggactttgttcgccctgaccaatcacagagggcaaaccctgactcagtctccaccatctcagttccgtcttgattactggtacttgtgcaagcagatagttagcatatctcacacgtgaagatccaacttcctggtcctacctcgtaatgaggttagtttgccagttataatggtgaatatgctctcattctttgagcaccatcaacctcactgcatgcatatcgattgtcaaaggtgctttggtgcttttaacaccagtagagaagtgtaattaaactgaatacttgagcagagtattagctgaatgctttagtaattaggattctggtatatttttcttccagcacatgctaatcttattttatatcaattaccagttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19873" stop="22195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20173" g_stop="20220" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20221" i_stop="20403" i_length="183">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20404" g_stop="20496" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="141" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20497" i_stop="20622" i_length="126">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20623" g_stop="20718" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="237" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20719" i_stop="21224" i_length="506">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21225" g_stop="21290" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="303" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21291" i_stop="21406" i_length="116">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21407" g_stop="21884" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="781" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="801"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E734214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20173" e_stop="20220"/>
          <exon e_start="20404" e_stop="20496"/>
          <exon e_start="20623" e_stop="20718"/>
          <exon e_start="21225" e_stop="21290"/>
          <exon e_start="21407" e_stop="21884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGGGTGAGTTACCTCCTATTCCTCTTAAAAAAAAAGAGTACATTCTACGCCAGATTGGATGTTTGATGTAACATTACATATATGTTATAATGTGTAGTTTATTAGCAACTTGTTTTCTGATTAGCAAACTCTAAAAGTAAAGAAGAGAAACTTTTGCCATTGTTAATGAGAAATAACCTGCTGCAGGTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAATGTAAGTTTGACCCTTTGATCTTTTTAGAAACCTTAAAGTCATGGAGATCAGATATTCAAAATGTGCTTCTGGCATATTTTTATTCTCTTTTGTTTTACACTTCTGATTATCTGGTTTTCTATCCAGATTGGCCGCTTACATTGTTCATTACCTTGGTGGGAGGATGCATTGGTGAATTTCATGATCAGTGGAGGTTACAATGTCATTTCTCAGATAGAACATGTATGTGAAGATTTACTAAATTTTCTCAAGTTATTCCTAAATATACATGCCTTTTGTCACTTTTTTTGGCATAGACTAGTATCAAACAGCATTATCTTGCTCTATTTAATAGGCATTGATTTGATTATGAAAACTACCAATATTGAGTTTGATCTTACTAGTTTCATCTTAACATGCAATTGTTGGAGTCTAAATACAGGAACCTGTGGGCACTGATATTAGTTCTGAAAAATTTGTTTAAATAAGAGAGATGGCATAAAGTGATACACCATAAGTTTAACTGCAAACATCTCTTGGAGTTACAAACCTATTAGCTTTAGACGTCATTAAAATCATTCATGTGGTATGTAGACTACTGTGATCTTGAGACTGATGGATTCAACTTGCTTCTGATTCTGCTGTTACATGGCATTTCTAGCTGTAACTTCATTTTCTATGTTGTCTACTGGTTTCGGTCTTGTCACGATGGAAAATTGTTCAGCATTCTCATGCTAGGACTCCTGCAGGTCAAGCAGAAAACACTGATAATTTGGGGTGAAGATGATCAGATTATTGACAACAAGCTTGCAGTGGTATGTTTCTTTCAAACTTTGGATCACTAAACCTGTTAGCTCCCAGCATTCATATATTTAGTACACGGAGTGCATAACAATGATACTGAAGTGTCCATTGACTTTCATGTCGTCAGAGATTGCATTGTGAACTTCCAAATGCAATTCTACGCCAAATACCAAAATGTGGCCATATCCCTCATGTGGAGAAGCCTGATGCTGTCTCCAGGTTGATAGCGGACTTTGTTCGCCCTGACCAATCACAGAGGGCAAACCCTGACTCAGTCTCCACCATCTCAGTTCCGTCTTGATTACTGGTACTTGTGCAAGCAGATAGTTAGCATATCTCACACGTGAAGATCCAACTTCCTGGTCCTACCTCGTAATGAGGTTAGTTTGCCAGTTATAATGGTGAATATGCTCTCATTCTTTGAGCACCATCAACCTCACTGCATGCATATCGATTGTCAAAGGTGCTTTGGTGCTTTTAACACCAGTAGAGAAGTGTAATTAAACTGAATACTTGAGCAGAGTATTAGCTGAATGCTTTAGTAATTAGGATTCTGGTATATTTTTCTTCCAGCACATGCTAATCTTATTTTATATCAATTACCA</genome_strand>
        <mrna_strand>GGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG.......................................................................................................................................................................................GTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAAT..............................................................................................................................ATTGGCCGCTTACATTGTTCATTACCTTGGTGGGAGGATGCATTGGTGAATTTCATGATCAGTGGAGGTTACAATGTCATTTCTCAGATAGAACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCAGAAAACACTGATAATTTGGGGTGAAGATGATCAGATTATTGACAACAAGCTTGCAGTG....................................................................................................................AGATTGCATTGTGAACTTCCAAATGCAATTCTACGCCAAATACCAAAATGTGGCCATATCCCTCATGTGGAGAAGCCTGATGCTGTCTCCAGGTTGATAGCGGACTTTGTTCGCCCTGACCAATCACAGAGGGCAAACCCTGACTCAGTCTCCACCATCTCAGTTCCGTCTTGATTACTGGTACTTGTGCAAGCAGATAGTTAGCATATCTCACACGTGAAGATCCAACTTCCTGGTCCTACCTCGTAATGAGGTTAGTTTGCCAGTTATAATGGTGAATATGCTCTCATTCTTTGAGCACCATCAACCTCACTGCATGCATATCGATTGTCAAAGGTGCTTTGGTGCTTTTAACACCAGTAGAGAAGTGTAATTAAACTGAATACTTGAGCAGAGTATTAGCTGAATGCTTTAGTAATTAGGATTCTGGTATATTTTTCTTCCAGCACATGCTAATCTTATTTTATATCAATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726243" ref_strand="+" ref_description="SGN-E726243 [LA11BA05]">
      <seq>ccgctttacatcttatctttctgctttcttctttacagtagaatttcacttaccttcttgatttatacagggaatactaatatcttcatatctacttcttaaagcttggcacaatcatggctgcttttgtactgtctttaatacttctcttggctttaactggttactcaagtggtgctaattactgtgtgtgtaaagatggttttgcggacacacttctgcagcacaatatagattatgcctgtggaaatggagctgattgtactggtatccttcaaaatggtccttgctacaaccctaacactattaaagatcactgctcctatgctgtaaatagctattaccagaggaaggcttcaactggtgctacttgtgacttcagtggaactgcttctttgacttcaactccaccagcctcctctagctctgcatgttatcagaccacaggaggcagcactggaggtaccacaaccccaaatgcaccaggaaccacaacaaatccagggattggcaccggcaccggcactagcactggcacgggcataggcacaggcacaggcacaggaactaatacaggtattaacaacccaacttttgggatgggaccaacaggaagtggtggcttcaacccagatggcagtggcacagaggctcttcatcaaaacagagtttttatcaccatggcacttttgtttacaagcagcttctttgatggtatgcttaaaaatttaaaaaaggaagtctgaatgtgaggcagcgaatgaaaaaaaaaggttatgagatgataatggacttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25806" stop="22647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25506" g_stop="25335" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25334" i_stop="24815" i_length="520">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24814" g_stop="24569" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="417" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="24476" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24475" g_stop="24442" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="451" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24441" i_stop="23291" i_length="1151">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23290" g_stop="22947" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="800" r_length="349" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E726243" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25506" e_stop="25335"/>
          <exon e_start="24814" e_stop="24569"/>
          <exon e_start="24475" e_stop="24442"/>
          <exon e_start="23290" e_stop="22947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTAAACATCTCATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAAGTAAGCTGCTTTTGCTACTTTCACTTGAAGATTCTTCTGTTTTCTGCATTTTTCATATGTTTAGTTGTGTATCCAACTATTTCTTTTGATATCTCACTTCAAGATTCTCTTTTTCCTGCATTTTTTCATCTTCTTGCCATGGGTTTTCATCAGATTTTGCTCTGTACTGTGTATCTAACAATTTCTATTCTTGTGATGAGTTTTTACTAGATGTTGCTCTTAGTAGTGTATTTACAGTTTCTTATTTAAAGATTGAGTTTTTTTTTAGCTTTCTTACTTCAAATTCTCTTTTTGTTTGCTCTTAGTGGTGTATCCAAGAATTTCTTATCAAAGATTAGAGTTTTCGGTTCTTTCACTTCAAGATTTTACCTTTTCTGCATTTCCATGTGTTTAACCAGAATAGTTGTTCTTAGTGGTGTATTCAAGAACTTGTTATTCGAAAGATCCAGTCTTTTTTCTTGACCATTATCAATGATTTCTCTTTCTTGAGCTGATTTGTTCTGGTGGTCTTTTTTTCTAGGTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCTGTAAATTCTTGAATCAACTCACTTTTCTCCTCTTTCTGTTTCCCCTCTCCTAGTAATGGTCACTCATATTTTTTTTCTTTGCTTTATCAACAGCCTCTAGCTCTGCATGTTATCAGACCACAGGAGGGTATGTATTCTTAAAGCTTTGTTATTTATGATGTGAGATCTTGTAATTATCTTGCCAATATTGAATGTAGCATCTCCTCAACTTGCATCCAGAAAATTGTTTTTTTCCTCTAGGACAATAAATGGTGATGTTTCCCTTTTTCTGCCCTGTTGGCTTCTCCTTGTAGATCATCACTCTCAACTTCTTGATCTTGAAAAAGATTTTTTTTCCCAAGATGTTATTATAAATATCCACCTACCCCCAGGGCTGGTAATAACATGGAAGTTAAAATTCATCTATCTAGGTAAAAAGGACATAAAAGAGGTGCAATTATTAATGCTAGATAAATTTGACTGTATGAATAAATGGTTGAAAGCTTTTCCTAATATAGTGACATTTTTCTCTGAGGACATGATTAAAGATTGTTGTTGGCTGTTCCTTTTGTTTCTTTTTAACCTAATTCTATCAATAGTCATTTTTAGTGTCCTAACTGTGTGAATTACTTTGAAACACAAGATCAGTTAGATTCATCATTTATATTTTATCCCCATGTGACCTGTCTTGATGTTGATATATAATCTGTATGTTAATGTTTTATTTGTCACTTTCCTCATTTGTTATGATGGATGTCTTTTTAGTTGAAATGTGTTTTCCAACCATGATACAAATATTTTATAAGAACCAAAGTCCTTTATACCATTTCTCATAATTCATGTAACATGCCTACTCTGGTATATCTATAATGACAACAATAGTGTGCTAACTAAGTGTCAATCTCAAGCCAGTTGGAGGCGGTTCCATCTTAGTTGGACTTTGAATTTTCTTGTAGAATTAATAATTGAATATTGTGTATGGACGGTGTAGTATTGCTCATGTAGTTTCTTGTCCTTTTTTGTTACTATGTGTTTTTTCGTGTATTTGGACTATCATATTCTTTTGTTTTGTTTCTATTGTTACTATTAGTTATTTCTTGTATTTCCATTATGTCTTTTTTTGGACTAACTTTCCTAGAGCCAAGGGTCTATCATAAACAACCTCTCTACCTATGAGGTAGGGGTAAGGTCTGCTTTGCGTAAATTCTACCTTCCCGGATCTCATTTTGTGGGATTATATTAGTGGATGGATGGTGTGCGACATTGGCCTCTCATATTGTTTTTTTTTACTTCAACCAGCAGCACTGGAGGTACCACAACCCCAAATGCACCAGGAACCACAACAAATCCAGGGATT------GGCACCGGCACTAGCACTGGCACGGGCATAGGCACAGGCACAGGCACAGGAACTAATACAGGTATTAACAACCCAACTTTTGGGATGGGACCAACAGGAAGTGGTGGCTTCAACCCAGATGGCAGTGGCACAGAGGCTCTTCATCAAAACAGAGTTTTTATCACCATGGCACTTTTGTTTACAAGCAGCTTC-TTGATGGTATGCTTAAGAATTTAAAAAAGGAAGTCTGAATGTGAGGCAGTGAATGAAAGAAAAAAAGGTTATGAGATGATAATGGACTTTTGGG</genome_strand>
        <mrna_strand>CCGCTT-TACATCTTATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCT.............................................................................................CCTCTAGCTCTGCATGTTATCAGACCACAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACTGGAGGTACCACAACCCCAAATGCACCAGGAACCACAACAAATCCAGGGATTGGCACCGGCACCGGCACTAGCACTGGCACGGGCATAGGCACAGGCACAGGCACAGGAACTAATACAGGTATTAACAACCCAACTTTTGGGATGGGACCAACAGGAAGTGGTGGCTTCAACCCAGATGGCAGTGGCACAGAGGCTCTTCATCAAAACAGAGTTTTTATCACCATGGCACTTTTGTTTACAAGCAGCTTCTTTGATGGTATGCTTAAAAATTTAAAAAAGGAAGTCTGAATGTGAGGCAGCGAATG-AA-AAAAAAAGGTTATGAGATGATAATGGACTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335017" ref_strand="+" ref_description="SGN-E335017 [cTOE-9-I3]">
      <seq>ttctttaaaagcttggcacaatcatggcctcttttgtactgtctttaatacttctcttggctttaactggttacctcaagtggtgctaattacctgtgtgtgtaaagatggttttgcggaccaccaccttctgcagcacaatatagattatgcctgtggaaatggagctgattgtacctggtatccttcaaaatggtccttgctaccaaccctaacactattaaagatcactgctcctatgctgtaaatagctattaccagaggaaggcttcaactggtgctacttgtgacttcagtggaactgcttctttgacttcaactccaccagcctcctctagctctgcatgttatcagaccacaggaggcagcactggaggtaccacaaccccaaatgcaccaggaaccacaacaaatccagggattggcaccggcactagcactggcacgggcataggcacaggcacaggcacaggaactaatacaggtattaacaacccaacttttgggatgggaccaacaggaagtggtggcttcaacccagatggcagtggcacagaggctcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25710" stop="22788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25413" g_stop="25335" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25334" i_stop="24815" i_length="520">
            <donor d_prob="0.731" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24814" g_stop="24569" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="331" r_length="252" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="24476" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24475" g_stop="24442" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="365" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24441" i_stop="23291" i_length="1151">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23290" g_stop="23088" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="568" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E335017" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25413" e_stop="25335"/>
          <exon e_start="24814" e_stop="24569"/>
          <exon e_start="24475" e_stop="24442"/>
          <exon e_start="23290" e_stop="23088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTA-CTCAAGTAAGCTGCTTTTGCTACTTTCACTTGAAGATTCTTCTGTTTTCTGCATTTTTCATATGTTTAGTTGTGTATCCAACTATTTCTTTTGATATCTCACTTCAAGATTCTCTTTTTCCTGCATTTTTTCATCTTCTTGCCATGGGTTTTCATCAGATTTTGCTCTGTACTGTGTATCTAACAATTTCTATTCTTGTGATGAGTTTTTACTAGATGTTGCTCTTAGTAGTGTATTTACAGTTTCTTATTTAAAGATTGAGTTTTTTTTTAGCTTTCTTACTTCAAATTCTCTTTTTGTTTGCTCTTAGTGGTGTATCCAAGAATTTCTTATCAAAGATTAGAGTTTTCGGTTCTTTCACTTCAAGATTTTACCTTTTCTGCATTTCCATGTGTTTAACCAGAATAGTTGTTCTTAGTGGTGTATTCAAGAACTTGTTATTCGAAAGATCCAGTCTTTTTTCTTGACCATTATCAATGATTTCTCTTTCTTGAGCTGATTTGTTCTGGTGGTCTTTTTTTCTAGGTGGTGCTAATTA-CTGTGTGTGTAAAGATGGTTTTGCGGA-CA-CA-CTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTA-CTGGTATCCTTCAAAATGGTCCTTGCTA-CAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCTGTAAATTCTTGAATCAACTCACTTTTCTCCTCTTTCTGTTTCCCCTCTCCTAGTAATGGTCACTCATATTTTTTTTCTTTGCTTTATCAACAGCCTCTAGCTCTGCATGTTATCAGACCACAGGAGGGTATGTATTCTTAAAGCTTTGTTATTTATGATGTGAGATCTTGTAATTATCTTGCCAATATTGAATGTAGCATCTCCTCAACTTGCATCCAGAAAATTGTTTTTTTCCTCTAGGACAATAAATGGTGATGTTTCCCTTTTTCTGCCCTGTTGGCTTCTCCTTGTAGATCATCACTCTCAACTTCTTGATCTTGAAAAAGATTTTTTTTCCCAAGATGTTATTATAAATATCCACCTACCCCCAGGGCTGGTAATAACATGGAAGTTAAAATTCATCTATCTAGGTAAAAAGGACATAAAAGAGGTGCAATTATTAATGCTAGATAAATTTGACTGTATGAATAAATGGTTGAAAGCTTTTCCTAATATAGTGACATTTTTCTCTGAGGACATGATTAAAGATTGTTGTTGGCTGTTCCTTTTGTTTCTTTTTAACCTAATTCTATCAATAGTCATTTTTAGTGTCCTAACTGTGTGAATTACTTTGAAACACAAGATCAGTTAGATTCATCATTTATATTTTATCCCCATGTGACCTGTCTTGATGTTGATATATAATCTGTATGTTAATGTTTTATTTGTCACTTTCCTCATTTGTTATGATGGATGTCTTTTTAGTTGAAATGTGTTTTCCAACCATGATACAAATATTTTATAAGAACCAAAGTCCTTTATACCATTTCTCATAATTCATGTAACATGCCTACTCTGGTATATCTATAATGACAACAATAGTGTGCTAACTAAGTGTCAATCTCAAGCCAGTTGGAGGCGGTTCCATCTTAGTTGGACTTTGAATTTTCTTGTAGAATTAATAATTGAATATTGTGTATGGACGGTGTAGTATTGCTCATGTAGTTTCTTGTCCTTTTTTGTTACTATGTGTTTTTTCGTGTATTTGGACTATCATATTCTTTTGTTTTGTTTCTATTGTTACTATTAGTTATTTCTTGTATTTCCATTATGTCTTTTTTTGGACTAACTTTCCTAGAGCCAAGGGTCTATCATAAACAACCTCTCTACCTATGAGGTAGGGGTAAGGTCTGCTTTGCGTAAATTCTACCTTCCCGGATCTCATTTTGTGGGATTATATTAGTGGATGGATGGTGTGCGACATTGGCCTCTCATATTGTTTTTTTTTACTTCAACCAGCAGCACTGGAGGTACCACAACCCCAAATGCACCAGGAACCACAACAAATCCAGGGATTGGCACCGGCACTAGCACTGGCACGGGCATAGGCACAGGCACAGGCACAGGAACTAATACAGGTATTAACAACCCAACTTTTGGGATGGGACCAACAGGAAGTGGTGGCTTCAACCCAGATGGCAGTGGCACAGAGGCTCTTCATC</genome_strand>
        <mrna_strand>TTCTT-TAAAAGCTTGGCACAATCATGGCCTCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTAATTACCTGTGTGTGTAAAGATGGTTTTGCGGACCACCACCTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACCTGGTATCCTTCAAAATGGTCCTTGCTACCAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCT.............................................................................................CCTCTAGCTCTGCATGTTATCAGACCACAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACTGGAGGTACCACAACCCCAAATGCACCAGGAACCACAACAAATCCAGGGATTGGCACCGGCACTAGCACTGGCACGGGCATAGGCACAGGCACAGGCACAGGAACTAATACAGGTATTAACAACCCAACTTTTGGGATGGGACCAACAGGAAGTGGTGGCTTCAACCCAGATGGCAGTGGCACAGAGGCTCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336720" ref_strand="+" ref_description="SGN-E336720 [cTOE-5-K22]">
      <seq>aacatctcatctttctgctttcttctttacagtagaatttcacttaccttcttgatttatacagggaatactaatatcttcatatctacttcttaaagcttggcacaatcatggctgcttttgtactgtctttaatacttctcttggctttaactggttactcaagtggtgctaattactgtgtgtgtaaagatggttttgcggacacacttctgcagcacaatatagattatgcctgtggaaatggagctgattgtactggtatccttcaaaatggtccttgctacaaccctaacactattaaagatcactgctcctatgctgtaaatagctattaccagaggaaggcttcaactggtgctacttgtgacttcagtggaactgcttctttgacttcaactccaccagcctcctctagctctgcatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25799" stop="24155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25499" g_stop="25335" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25334" i_stop="24815" i_length="520">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24814" g_stop="24569" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="411" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="24476" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24475" g_stop="24455" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="432" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E336720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25499" e_stop="25335"/>
          <exon e_start="24814" e_stop="24569"/>
          <exon e_start="24475" e_stop="24455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTCATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAAGTAAGCTGCTTTTGCTACTTTCACTTGAAGATTCTTCTGTTTTCTGCATTTTTCATATGTTTAGTTGTGTATCCAACTATTTCTTTTGATATCTCACTTCAAGATTCTCTTTTTCCTGCATTTTTTCATCTTCTTGCCATGGGTTTTCATCAGATTTTGCTCTGTACTGTGTATCTAACAATTTCTATTCTTGTGATGAGTTTTTACTAGATGTTGCTCTTAGTAGTGTATTTACAGTTTCTTATTTAAAGATTGAGTTTTTTTTTAGCTTTCTTACTTCAAATTCTCTTTTTGTTTGCTCTTAGTGGTGTATCCAAGAATTTCTTATCAAAGATTAGAGTTTTCGGTTCTTTCACTTCAAGATTTTACCTTTTCTGCATTTCCATGTGTTTAACCAGAATAGTTGTTCTTAGTGGTGTATTCAAGAACTTGTTATTCGAAAGATCCAGTCTTTTTTCTTGACCATTATCAATGATTTCTCTTTCTTGAGCTGATTTGTTCTGGTGGTCTTTTTTTCTAGGTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCTGTAAATTCTTGAATCAACTCACTTTTCTCCTCTTTCTGTTTCCCCTCTCCTAGTAATGGTCACTCATATTTTTTTTCTTTGCTTTATCAACAGCCTCTAGCTCTGCATGTTATC</genome_strand>
        <mrna_strand>AACATCTCATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCT.............................................................................................CCTCTAGCTCTGCATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297660" ref_strand="+" ref_description="SGN-E297660 [cLET-28-H7]">
      <seq>tccacctatttttcttgtctcgagtgctccatatccctataacacactttctctgttccccttaaacatcttatctttctgctttcttctttacagtagaatttcacttaccttcttgatttatacagggaatactaatatcttcatatctacttcttaaagcttggcacaatcatggctgcttttgtactgtctttaatacttctcttggctttaactggttactcaagtggtgctaattactgtgtgtgtaaagatggttttgcggacacacttctgcagcacaatatagattatgcctgtggaaatggagctgattgtactggtatccttcaaaatggtccttgctacaaccctaacactattaaagatcactgctcctatgctgtaaatagctattaccagaggaaggcttcaactggtgctacttgtgacttcagtggaactgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25863" stop="24290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25563" g_stop="25335" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25334" i_stop="24815" i_length="520">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24814" g_stop="24590" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="454" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E297660" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25563" e_stop="25335"/>
          <exon e_start="24814" e_stop="24590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCTATTTTTCTTGTCTCGAGAGCTCCATATCCCTATGACACACTTTCTCTGTTCCCCTTAAACATCTCATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAAGTAAGCTGCTTTTGCTACTTTCACTTGAAGATTCTTCTGTTTTCTGCATTTTTCATATGTTTAGTTGTGTATCCAACTATTTCTTTTGATATCTCACTTCAAGATTCTCTTTTTCCTGCATTTTTTCATCTTCTTGCCATGGGTTTTCATCAGATTTTGCTCTGTACTGTGTATCTAACAATTTCTATTCTTGTGATGAGTTTTTACTAGATGTTGCTCTTAGTAGTGTATTTACAGTTTCTTATTTAAAGATTGAGTTTTTTTTTAGCTTTCTTACTTCAAATTCTCTTTTTGTTTGCTCTTAGTGGTGTATCCAAGAATTTCTTATCAAAGATTAGAGTTTTCGGTTCTTTCACTTCAAGATTTTACCTTTTCTGCATTTCCATGTGTTTAACCAGAATAGTTGTTCTTAGTGGTGTATTCAAGAACTTGTTATTCGAAAGATCCAGTCTTTTTTCTTGACCATTATCAATGATTTCTCTTTCTTGAGCTGATTTGTTCTGGTGGTCTTTTTTTCTAGGTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTT</genome_strand>
        <mrna_strand>TCCACCTATTTTTCTTGTCTCGAGTGCTCCATATCCCTATAACACACTTTCTCTGTTCCCCTTAAACATCTTATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31541" stop="32437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31841" g_stop="32163" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31841" e_stop="32163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATATTAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTATCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31541" stop="32437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31841" g_stop="32146" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31841" e_stop="32146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATATTAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTATCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314239" ref_strand="+" ref_description="SGN-E314239 [cTOA-21-B17]">
      <seq>aaacacttacaatggcgatcctgattcgatcacgaccgttgatcagaacattaacaaatttcaaaacaatcacaaccgttcctttcctctcacaagaacctcaactcgccgggactccgccggagaacactaccccactacccccgaatccatcctccggtagcccactctacaatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggctgataaatctgtcaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32261" stop="33468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32561" g_stop="33168" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E314239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32561" e_stop="33168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTG</genome_strand>
        <mrna_strand>AAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537844" ref_strand="+" ref_description="SGN-E537844 [TUS-56-K12]">
      <seq>caatggcgatcctgattcgatcacgaccgttgatcagaacattaacaaatttcaaaacaatcacaaccgttcctttcctctcacaagaacctcaactcgccgggactccgccggagaacactaccccactacccccgaatccatcctccggtagcccactctacaatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggctgataaatctgtcaaattgctcgaaaggatgattgcaactggagttgagtataaagaagctttgcctgatgaagagtcatatgatttggttactggcttgctatttaaagcaaaccttattgatgatgcgttgaaatatattgattcagcctttaaatctgggtataagctatccatgaatgtatttaatgagtgtgtgcgaagctgtatctacagcaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32270" stop="35377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32570" g_stop="33176" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33177" i_stop="34881" i_length="1705">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34882" g_stop="35077" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="803" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E537844" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32570" e_stop="33176"/>
          <exon e_start="34882" e_stop="35077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAGGTTTGTATTTCGAGCTAATCACTTAGCTTTGAATATATTTGTTTGTACAATATAGTCATATACGGATAGGATGTATGCAAACCTTAAACTCTACCTTTGTGGGGTAGCTGTTTCATATAGAACCTCCGCTCAAAAGAAATAACAAATGTATAGAACAAGTGTGATAACATCTATTATGCATTTAAGTTATGTACACGGGTAGTCTTTCAGTATAGGGTTGTTGCTTTACTTTTAGGTTATGGATCCATGCTTATTATAAACTAGTTGTATGAAGTGATAAGCCGGAGGAAGGTGAGGATGACATCTAACCTGGTATAGAAATTAAAACTTTGTATATAACTGTGGATATCCCTTTATTTGCTTTATTGTTCATTTATATGAAATCATTGTTAGCCTTAATTTTATTTTCTAAAAGAGGAGACTGTTAGTTCATTTATATGAAATTGTTGTTGGCCTTAATTATATTTTCTAAAGTTGGAGACTGTTAGTTGAGATTAGTATTGGGCTGAAAAGTTCGTTGCAGTACAAGAAACACAACACAGAAAAACTTAAGACTCAAATTTAGTGAGTTGAGAGTTTTAAGACCTTTATATTCATAGATTAGAAATAGAGAATTTATAAGGCATGTATATTGACAAAAAGATACTATCTTCATTTGTTGTGAAATGAACATTTGCGGCCCTTTCGGTTGGCTGCTAGGGTGATCCAGGATTATGGTATGGTATTTATTTGGAAGGTTTCATATTAGTCAGAAAATGTTAATGACGTTTATTCATATTTGTGTACAGTATAAACACACTAAGAAGCTTTGCAGATTTTACCAGTGATATAGCCGCCAGCTGGTTGCAATTGACAAATCGAAGTTCTCTATTTAGTGCCTCTTTGGATTGACTTACTCTAGGTGCTTTTAAGCCAAAATAGCTTTTAAGTTCTTTTCAAAAGTTTCAGAGGGATTGACAAAATTCAGAGTAACTTTCAAATTTAAGTATTTGAGTCAAAAGCAATAAATTGACTTATTTTAGCTTTTCAACTGTTTTGCTTTGATTAATCTATTAACTTCTTCTTATCACAAATATTTATTTTTCATCCAATATAAATTAAGCTTCAGCATTTGAAATTTAAAACTACTTAATTAAGCCAATGCAAACACATTCTAAGTAAAATAGGAGTACTTATAAGCACTTGTTTTTAAGCCAAAATAACTAAAATAAGCCAAAAGCCATATCTAACTCATGGCTTTTGGCTTATCAGTCATAAGTCAATCCAAACAGGCTCTTAGCCTTACCAAAACAATGGAACATTCAAAATAACATAGTGGGGAACTGCCTCTAAAATGAACTGAGCGAGGCGTGCTAAAACTATTCCAGTTGCAGCAGAAGTCCAAACTCCTGTCTGTTAGTTACTACTGGATTCATAGCTTTATTATTTGGGTTTTATTTTCCTTTAGTTTAGTCTTGCTGCAAACAAAATTTTGCCATATGTCTTTGCTCCTCCTTTTCCATTCTTTCAGCTTGCTTATTCTTGAATTCTCTGGCTCCTTTTGATTTAGTGTGGATAGCAAGTTTACTAAGTGACAAGGAATCTCGTGGAGTTTATTGAGCTCGTCTTGATTGTGACAGTTCACTATGTGTTTTCATCATGCATGCATGTACTCTGTCATGCATTGGTGATATTTGATAGATCTCATGTGCTATACTTATGCCAGGATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGG</genome_strand>
        <mrna_strand>CAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTTAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248837" ref_strand="+" ref_description="SGN-E248837 [cLEF-49-I5]">
      <seq>tcctgatttgatcacgaccgttgatcagaacattaacaaagttcaaaacaggcacaaccgttcctttcctctcacaagaacctcaactcgccgggactccgccggagaacactaccccactacccccgaatccatcctccggtagcccactctacaatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32279" stop="33453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32579" g_stop="33153" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E248837" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32579" e_stop="33153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGAT</genome_strand>
        <mrna_strand>TCCTGATTTGATCACGACCGTTGATCAGAACATTAACAAAGTTCAAAACAGGCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324492" ref_strand="+" ref_description="SGN-E324492 [cTOC-9-C13]">
      <seq>tgattcgatcacgaccgttgatcagaacattaacaaatttcaaaacaatcacaaccgttcctttcctctcacaagaacctcaactcgccgggactccgccggagaacactaccccactacccccgaatccatcctccggtagcccactctacaatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32282" stop="33450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32582" g_stop="33150" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E324492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32582" e_stop="33150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCT</genome_strand>
        <mrna_strand>TGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344252" ref_strand="+" ref_description="SGN-E344252 [cTOF-16-E3]">
      <seq>atttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggctgataaatctgtcaaattgctcgaaaggatgattgcaactggagttgagtataaagaagctttgcctgatgaagagtcatatgatttggttactggcttgctatttaaagcaaaccttattgatgatgcgttgaaatatattgattcagccttaaaatctgggtataagctatccatgaatgtatttaatgagtgtgtgcgaagctgtatctacagcaacaggctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32454" stop="35383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32754" g_stop="33176" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33177" i_stop="34881" i_length="1705">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34882" g_stop="35083" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="625" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E344252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32754" e_stop="33176"/>
          <exon e_start="34882" e_stop="35083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAGGTTTGTATTTCGAGCTAATCACTTAGCTTTGAATATATTTGTTTGTACAATATAGTCATATACGGATAGGATGTATGCAAACCTTAAACTCTACCTTTGTGGGGTAGCTGTTTCATATAGAACCTCCGCTCAAAAGAAATAACAAATGTATAGAACAAGTGTGATAACATCTATTATGCATTTAAGTTATGTACACGGGTAGTCTTTCAGTATAGGGTTGTTGCTTTACTTTTAGGTTATGGATCCATGCTTATTATAAACTAGTTGTATGAAGTGATAAGCCGGAGGAAGGTGAGGATGACATCTAACCTGGTATAGAAATTAAAACTTTGTATATAACTGTGGATATCCCTTTATTTGCTTTATTGTTCATTTATATGAAATCATTGTTAGCCTTAATTTTATTTTCTAAAAGAGGAGACTGTTAGTTCATTTATATGAAATTGTTGTTGGCCTTAATTATATTTTCTAAAGTTGGAGACTGTTAGTTGAGATTAGTATTGGGCTGAAAAGTTCGTTGCAGTACAAGAAACACAACACAGAAAAACTTAAGACTCAAATTTAGTGAGTTGAGAGTTTTAAGACCTTTATATTCATAGATTAGAAATAGAGAATTTATAAGGCATGTATATTGACAAAAAGATACTATCTTCATTTGTTGTGAAATGAACATTTGCGGCCCTTTCGGTTGGCTGCTAGGGTGATCCAGGATTATGGTATGGTATTTATTTGGAAGGTTTCATATTAGTCAGAAAATGTTAATGACGTTTATTCATATTTGTGTACAGTATAAACACACTAAGAAGCTTTGCAGATTTTACCAGTGATATAGCCGCCAGCTGGTTGCAATTGACAAATCGAAGTTCTCTATTTAGTGCCTCTTTGGATTGACTTACTCTAGGTGCTTTTAAGCCAAAATAGCTTTTAAGTTCTTTTCAAAAGTTTCAGAGGGATTGACAAAATTCAGAGTAACTTTCAAATTTAAGTATTTGAGTCAAAAGCAATAAATTGACTTATTTTAGCTTTTCAACTGTTTTGCTTTGATTAATCTATTAACTTCTTCTTATCACAAATATTTATTTTTCATCCAATATAAATTAAGCTTCAGCATTTGAAATTTAAAACTACTTAATTAAGCCAATGCAAACACATTCTAAGTAAAATAGGAGTACTTATAAGCACTTGTTTTTAAGCCAAAATAACTAAAATAAGCCAAAAGCCATATCTAACTCATGGCTTTTGGCTTATCAGTCATAAGTCAATCCAAACAGGCTCTTAGCCTTACCAAAACAATGGAACATTCAAAATAACATAGTGGGGAACTGCCTCTAAAATGAACTGAGCGAGGCGTGCTAAAACTATTCCAGTTGCAGCAGAAGTCCAAACTCCTGTCTGTTAGTTACTACTGGATTCATAGCTTTATTATTTGGGTTTTATTTTCCTTTAGTTTAGTCTTGCTGCAAACAAAATTTTGCCATATGTCTTTGCTCCTCCTTTTCCATTCTTTCAGCTTGCTTATTCTTGAATTCTCTGGCTCCTTTTGATTTAGTGTGGATAGCAAGTTTACTAAGTGACAAGGAATCTCGTGGAGTTTATTGAGCTCGTCTTGATTGTGACAGTTCACTATGTGTTTTCATCATGCATGCATGTACTCTGTCATGCATTGGTGATATTTGATAGATCTCATGTGCTATACTTATGCCAGGATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGAT</genome_strand>
        <mrna_strand>ATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252337" ref_strand="+" ref_description="SGN-E252337 [cLEG-12-N16]">
      <seq>aaatatattgattcagccttaaaatctgggtataagctatccatgaatgtatttaatgagtgtgtgcgaagctgtatctacagcaacaggctggatgcattggtgtcaataatagagaaatgcaagaaaacagatcagaacaaaggcctgttgccgccttggaacatgtgcacacaccttgcagatagtgcattacaagcagataatagtgaactagcttttacttccttggagttctttgtgaaatggattgttagaggtgagactgtgaagccccctgttttactcagtgtaggcgaaggactgcttgtggctgcacttggaactgctggtagaacatacaatgtgaaactcctgaatggtgcttgggaagtccttaagcgctcactacggcaaatgaggatccctaaccctgagtctttccttgcaaagatgtatgcccatgcatcattgggacaattgcagaatgcttttgctaccctgcatgagtttgagaaagcttatgctagttctaaagatgagagtgcagaagaactattttctccctttacctctntgaatccactggctgttgcttgctgcaggaatggttttgtcaccctggactctgtttactatcagctggagaatttgagccgagcagacccccctttcaagtctcttgctgcactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34688" stop="36198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34988" g_stop="35113" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35208" i_length="95">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35209" g_stop="35691" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="609" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35834" g_stop="35898" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="674" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E252337" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34988" e_stop="35113"/>
          <exon e_start="35209" e_stop="35691"/>
          <exon e_start="35834" e_stop="35898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAGGTTTGTATCCCTTCGATGAGATCATCCGAACCATGAAACTTTCTATTATTTGAAATATATTTTAGTCTTGATACTGCTGTTTTGGGTATTCCCAGAAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCTGTATGTTCTCTTTCTCTTCCAACTAAGAATTCTGAATATCTCACAGCTTAGCACTTTGCTGTACCTGCTTAAGTGTGTTGGATGTTCTCTAACTGGGTCACTTCTTAAACTTAGTATTGCCACTGACTTCCAAATATTCCAGGTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAA</genome_strand>
        <mrna_strand>AAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAG...............................................................................................AAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTNTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT..............................................................................................................................................GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708181" ref_strand="+" ref_description="SGN-E708181 [FA35AC07]">
      <seq>ccgtagctgtatctacagcaacaggctggatgcattggtgtcaataatagagaaatgcaagaaaacagatcagaacaaaggcctgttgccgccttggaacatgtgcacacaccttgcggatagtgcattacaagcagataatagtgaactagcttttacttccttggagttctttgtgaaatggattgttagaggtgagactgtgaagccccctgttttactcagtgtaggcgaaggactgcttgtggctgcacttggaactgctggtagaacatacaatgtgaaactcctgaatggtgcttgggaagtccttaagcgctcactacggcaaatgaggatccctaaccctgagtctttccttgcaaagatgtatgcccatgcatcattgggacaattgcagaatgcttttgctaccctgcatgagtttgagaaagcttatgctagttctaaagatgagagtgcagaagaactattttctccctttacctctttgaatccactggctgttgcttgctgcaggaatggttttgtcaccctggactctgtttactatcagctggagaatttgagccgagcagacccccctttcaagtctcttgctgcactcaattgtgtaattttaggctgtgccaatatatgggatattgatcgtgcttatcagacatttgctgcaattgaatccacttttggattaaccccagatatccattcatacaatgcgctgatatatgcatttgggaagcttggcaagagggatgaagccacaaaagtctatgagcactttatggatttaggagtgaagccaaatgaaatgacatattctctacttgttgatgctcatcttattaagcgagaaccgaaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34754" stop="36938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35053" g_stop="35113" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="35208" i_length="95">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35209" g_stop="35691" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="544" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35834" g_stop="36040" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="751" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36041" i_stop="36522" i_length="482">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36523" g_stop="36638" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="867" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E708181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35053" e_stop="35113"/>
          <exon e_start="35209" e_stop="35691"/>
          <exon e_start="35834" e_stop="36040"/>
          <exon e_start="36523" e_stop="36638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAGGTTTGTATCCCTTCGATGAGATCATCCGAACCATGAAACTTTCTATTATTTGAAATATATTTTAGTCTTGATACTGCTGTTTTGGGTATTCCCAGAAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCTGTATGTTCTCTTTCTCTTCCAACTAAGAATTCTGAATATCTCACAGCTTAGCACTTTGCTGTACCTGCTTAAGTGTGTTGGATGTTCTCTAACTGGGTCACTTCTTAAACTTAGTATTGCCACTGACTTCCAAATATTCCAGGTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATCGTGCTTATCAGACATTTGCTGCAATTGAATCCACTTTTGGATTAACCCCAGATATCCATTCATACAATGCGCTGATATATGCATTTGGGAAGCTTGGCAAGGTAAATAGAAATGAATGTAACATCTGAATGCACATAGTATGGGTTCAACCTAGAGGTCATTTCTTTGGATCCTATTTATTTGTTCATCGGTAAACATGTACTGAGAAAAACCTGAAGGAGTCATTTTACTAATTAGCCCCCAGGATTAAGCTCAATTGGTAAAGGTTGAGGACTTGTGTCTTACGTCACAAGTTCAAGCCCCATGTCAATTGAAACTAAAGTTCAAGGGGCAGGGCCATCATCCCTGAGTTTTGAAGTCTGTGGTTGGTCCAAAGGGTTCACTCCAAATGAATTTTTCATCATAAAATAAAGTACTGACTGTGATAATTTTGAAGGTTCTTATCCCAAGTATTGTTATAATAGCTCGAAGCTACATTCTTTCATTTGTATGCACAAGTAATTGGAACAAATAATTGCATAGAATGCCTTTCTTCTGTTCTATGATTATATGAATATTAATAAAATATCTTTTCTTGTTGCAGAGGGATGAAGCCACAAAAGTCTATGAGCACTTTATGGATTTAGGAGTGAAGCCAAATGAAATGACATATTCTCTACTTGTTGATGCTCATCTTATTAAGCGAGAACCGAAAGCTGC</genome_strand>
        <mrna_strand>CCGTAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAG...............................................................................................AAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCGGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT..............................................................................................................................................GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATCGTGCTTATCAGACATTTGCTGCAATTGAATCCACTTTTGGATTAACCCCAGATATCCATTCATACAATGCGCTGATATATGCATTTGGGAAGCTTGGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGATGAAGCCACAAAAGTCTATGAGCACTTTATGGATTTAGGAGTGAAGCCAAATGAAATGACATATTCTCTACTTGTTGATGCTCATCTTATTAAGCGAGAACCGAAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202168" ref_strand="+" ref_description="SGN-E202168 [cLEC-7-F11]">
      <seq>gaagccccctgttttactcagtgtaggcgaaggactgcttgtggctgcacttggaactgctggtagaacatacaatgtgaaactcctgaatggtgcttgggaagtccttaagcgctcactacggcaaatgaggatccctaaccctgagtctttccttgcaaagatgtatgcccatgcatcattgggacaattgcagaatgcttttgctaccctgcatgagtttgagaaagcttatgctagttctaaagatgagagtgcagaagaactattttctccctttacctctttgaatccactggctgttgcttgctgcaggaatggttttgtcaccctggactctgtttactatcagctggagaatttgagccgagcagacccccctttcaagtctcttgctgcactcaattgtgtaattttaggctgtgccaatatatgggatattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35052" stop="36239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35352" g_stop="35691" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35834" g_stop="35939" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="446" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E202168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35352" e_stop="35691"/>
          <exon e_start="35834" e_stop="35939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCTGTATGTTCTCTTTCTCTTCCAACTAAGAATTCTGAATATCTCACAGCTTAGCACTTTGCTGTACCTGCTTAAGTGTGTTGGATGTTCTCTAACTGGGTCACTTCTTAAACTTAGTATTGCCACTGACTTCCAAATATTCCAGGTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATC</genome_strand>
        <mrna_strand>GAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT..............................................................................................................................................GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556412" ref_strand="+" ref_description="SGN-E556412 [cTSD-3-G2]">
      <seq>tgaagaagatccgaagacgatgtactcgagagatggattatgaatctgatgatcgagttgaggagttgaccaagaagtttaacatccgaatgggtgcagagaatcgtcgtaacatgctctttaatcttagatacaacatggaatattctggttagatgttgctgaagtggagttagaggtagcatgcatagtcaacacccgttcagaatttctcgcccttctgctgagaaacttgatggaatgaaatattagtatatcagtgcttctagcatttgaatgttaaaagactcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttagttctggttagtattgagctgtggaggatggtgtctggttagaaggtttttgttttaacatatttatgtattcttttttccacccattaggtagcttttaaagacagggaattgctaatgaaatgagatgaatctcattttttgaataaactgtactcttcatgctgaagcagtttgcntcnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36486" stop="37684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36786" g_stop="37386" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="654"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E556412" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36786" e_stop="37386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGATCCGAAGACGATGTACTCGAGAGATGGATTATGAATCTGATGATCGAGTTGAGGAGTTGACCAAGAAGTTTAACATCCGAATGGGTGCAGAGAATCGTCGTAACATGCTCTTTAATCTTAGATACAACATGGAATATTCTGGTTAGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAA</genome_strand>
        <mrna_strand>TGAAGAAGATCCGAAGACGATGTACTCGAGAGATGGATTATGAATCTGATGATCGAGTTGAGGAGTTGACCAAGAAGTTTAACATCCGAATGGGTGCAGAGAATCGTCGTAACATGCTCTTTAATCTTAGATACAACATGGAATATTCTGGTTAGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCNTCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266843" ref_strand="-" ref_description="SGN-E266843 [cLEI-7-B16]">
      <seq>tggattatgaatctgatgatcgagttgaggagttgaccaagaagtttaacatccgaatgggtgcagagaatcgtcgtaacatgctctttaatcttagatacaacatggaatattctggttagatgttgctgaagtggagttagaggtagcatgcatagtcaacacccgttcagaatttctcgcccttctgctgagaaacttgatggaatgaaatattagtatatcagtgcttctagcatttgaatgttaaaagactcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttagttctggttagtattgagctgtggaggatggtgtctggttagaaggtttttgttttaacatatttatgtattcttttttccacccattaggtagcttttaaagacagggaattgctaatgaaatgagatgaatctcattttttgaataaactgtactcttcatgctgaagcagtttgcatcaagtgcaattttctgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36519" stop="37704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36819" g_stop="37403" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="602"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E266843" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266843" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36819" e_stop="37403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTATGAATCTGATGATCGAGTTGAGGAGTTGACCAAGAAGTTTAACATCCGAATGGGTGCAGAGAATCGTCGTAACATGCTCTTTAATCTTAGATACAACATGGAATATTCTGGTTAGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTT</genome_strand>
        <mrna_strand>TGGATTATGAATCTGATGATCGAGTTGAGGAGTTGACCAAGAAGTTTAACATCCGAATGGGTGCAGAGAATCGTCGTAACATGCTCTTTAATCTTAGATACAACATGGAATATTCTGGTTAGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266913" ref_strand="-" ref_description="SGN-E266913 [cLEI-7-A16]">
      <seq>agatgttgctgaagtggagttagaggtagcatgcatagtcaacacccgttcagaatttctcgcccttctgctgagaaacttgatggaatgaaatattagtatatcagtgcttctagcatttgaatgttaaaagactcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttagttctggttagtattgagctgtggaggatggtgtctggttagaaggtttttgttttaacatatttatgtattcttttttccacccattaggtagcttttaaagacagggaattgctaatgaaatgagatgaatctcattttttgaataaactgtactcttcatgctgaagcagtttgcatcaagtgcaattttctgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36639" stop="37704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36939" g_stop="37403" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="482"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E266913" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266913" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36939" e_stop="37403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTT</genome_strand>
        <mrna_strand>AGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267011" ref_strand="+" ref_description="SGN-E267011 [cLEI-7-P22]">
      <seq>aaattgcacttgatgcaaactgcttcatcttgaagagtccagtttattcaaaaaatgagatttatctcatttcattaacaattccctgtctttaaaagctacctaatgggtggaaaaaagaatacataaatatgttaaaacaaaaaccttctaaccagacaccatcctccacagctcaatactaaccagaactaagttatttacagccactggttagaggatcgccccgaggtatatgagatgtgacactgctaaactttgcgaaacgccaacatcagctgttcaactagcacaaaggctagctataagaagagagaaaagagtcttttaacattcaaatgctagaagcactgatatactaatatttcattccatcaagttgctcagctgaagggcgagaaattctgaacgggtgttgactatgcatgctacctctaactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37695" stop="36653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37395" g_stop="36953" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E267011" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37395" e_stop="36953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCACTTGATGCAAACTGCTTCAGCATGAAGAGTACAGTTTATTCAAAAAATGAGATTCATCTCATTTCATTAGCAATTCCCTGTCTTTAAAAGCTACCTAATGGGTGGAAAAAAGAATACATAAATATGTTAAAACAAAAACCTTCTAACCAGACACCATCCTCCACAGCTCAATACTAACCAGAACTAAGTAATTTACAGCCACTGGTTAGAGGATCGCCCCGAGGTATATGAGATGTGACACTGCTAAACTTTGCGAAACGCCAACATCAGCTGTCCAACTAGCACAGAGGCAAGCTAGAAGAAGAGAGAAAAGAGTCTTTTAACATTCAAATGCTAGAAGCACTGATATACTAATATTTCATTCCATCAAGTTTCTCAGCAGAAGGGCGAGAAATTCTGAACGGGTGTTGACTATGCATGCTACCTCTAACTCCA</genome_strand>
        <mrna_strand>AAATTGCACTTGATGCAAACTGCTTCATCTTGAAGAGTCCAGTTTATTCAAAAAATGAGATTTATCTCATTTCATTAACAATTCCCTGTCTTTAAAAGCTACCTAATGGGTGGAAAAAAGAATACATAAATATGTTAAAACAAAAACCTTCTAACCAGACACCATCCTCCACAGCTCAATACTAACCAGAACTAAGTTATTTACAGCCACTGGTTAGAGGATCGCCCCGAGGTATATGAGATGTGACACTGCTAAACTTTGCGAAACGCCAACATCAGCTGTTCAACTAGCACAAAGGCTAGCTATAAGAAGAGAGAAAAGAGTCTTTTAACATTCAAATGCTAGAAGCACTGATATACTAATATTTCATTCCATCAAGTTGCTCAGCTGAAGGGCGAGAAATTCTGAACGGGTGTTGACTATGCATGCTACCTCTAACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350059" ref_strand="+" ref_description="SGN-E350059 [cTOS-4-H19]">
      <seq>agaatttctcgcccttctgctgagaaacttgatggaatgaaatattagtatatcagtgcttctagcatttgaatgttaaaagactcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttagttctggttagtattgagctgtggaggatggtgtctggttagaaggtttttgttttaacatatttatgtattcttttttccacccattaggtagcttttaaagacagggaattgctaatgaaatgagatgaatctcattttttgaataaactgtactcttcatgctgaagcagtttgcatcaagtgcaattttctgctttattcttgcttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36690" stop="37715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36990" g_stop="37417" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E350059" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36990" e_stop="37417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTTATTCTTGCTTCAGT</genome_strand>
        <mrna_strand>AGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTTATTCTTGCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351611" ref_strand="+" ref_description="SGN-E351611 [cTOS-12-J4]">
      <seq>agaatttctcgcccttctgctgagaaacttgatggaatgaaatattagtatatcagtgcttctagcatttgaatgttaaaagactcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttagttctggttagtattgagctgtggaggatggtgtctggttagaaggtttttgttttaacatatttatgtattcttttttccacccattaggtagcttttaaagacagggaattgctaatgaaatgagatgaatctcattttttgaataaactgtactcttcatgctgaagcagtttgcatcaagtgcaattttctgctttattcttgcttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36690" stop="37715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36990" g_stop="37417" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E351611" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36990" e_stop="37417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTTATTCTTGCTTCAGT</genome_strand>
        <mrna_strand>AGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTTATTCTTGCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258334" ref_strand="+" ref_description="SGN-E258334 [cLEG-49-P19]">
      <seq>ctcttttctctcttcttctagcttgcctctgtgctagttggacagctgatgttggcgtttcgcaaagtttagcagtgtcacatctcatatacctcggggcgatcctctaaccagtggctgtaaattacttaattctggttagtattgagctgtggaggatggtgtctggttaaaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36773" stop="37553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37073" g_stop="37253" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E258334" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37073" e_stop="37253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTT</genome_strand>
        <mrna_strand>CTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAATTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAAAAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717525" ref_strand="+" ref_description="SGN-E717525 [FC02AA05]">
      <seq>gggcgattggcggccaatcggccgaattgatatataaaaaaatcaaatctttgatggatgattctccaaaaaagtggtaaattttccattcccagaaaatctcaagaaccaaaaagcaaatggggcaaaatactggtgcaagtggcaaagggaagaaagaagcagaaacggaaaaggaaacagtggtagaagaagaagaagaggaagttgaagaaggtggagaagaagctgaacaagatggaatgtctgttcattctccttgtaaacctgcatcttctgctcttcgtaaggaacaatcacaggtggaattggagataagattgttggaggctcttgaaatctatccccctgccaaattgagaggcatccatcgtcattttgtcctatacggcttaacagagcatctgcgtagaagcttcaataggcaatttgctcctgatgatgttttgaagctgctggatcgcttctacaacttggatatggtgaaaccagaggacgaggactctgaaatcctaaatcaagaggaagagttttgcctacctcacagttatttctcgagggacgaaccttgaactaagttggaatcgatatggatattgaacttctacatatggcagtttttgtatagtagtatctgggtggttcaatatatttttttttttgatgccataaaaaattctgcatctattaatcttactgaaaagtttgtatgcatgctgatatttcagctctccttatatatacagtagacagttggatctttttaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37604" stop="40617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37908" g_stop="38169" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="290" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38170" i_stop="38819" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38820" g_stop="38892" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="363" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38893" i_stop="39126" i_length="234">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39127" g_stop="39178" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="415" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39179" i_stop="39369" i_length="191">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39370" g_stop="39439" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="485" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39440" i_stop="40038" i_length="599">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40039" g_stop="40319" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="768" r_length="283" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="813"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E717525" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37908" e_stop="38169"/>
          <exon e_start="38820" e_stop="38892"/>
          <exon e_start="39127" e_stop="39178"/>
          <exon e_start="39370" e_stop="39439"/>
          <exon e_start="40039" e_stop="40319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATAAAAAATCAAATCTTTGATGGATGATTCTCCAAAAAAGTGGTAAATTTTCCATTCCCAGAAAATCTCAAGAACCAAAAAGCAAATGGGGCAGAATACTGGTGCAAGTGGCAAAGGGAAGAAAGAAGCAGAAACGGAAAAGGAAACAGTGGTAGAAGAAGAAGAAGAGGAAGTTGAAGAAGGTGGAGAAGAAGCTGAACAAGATGGAATGTCTGTTCATTCTCCTTGTAAACCTGCATCTTCTGCTCTTCGTAAGGTACTTTTTTTTTTCTTAATTAAGAAAAATTTAGGTACCCTTTGTGTTTTTATTCATATATGCATGGGGTAGGGTATCGGACCAAACATCATTCGTCGAAAAATTATACTATTAAGTTTGAATTTTTATATTAGATACTTATTAGAGGTTGAATCCCTTTTGATTAAATATACATTTGCTCTAGCCTTGGGGATAGAGAGTAGGAATAGACAAGTATCAATCTTGCTCTTAATAGGCATAGGACTCAAAAAGTGGGGATCAGCTTACCTGATAGTACTTATTGTCCGTGGGAGGTGACAAATATCCGGACTCGGACAACGCGGTTATCTAATAATGAAAAAAAGATGTTGAATCCCTTTTATTTAAATTCCCATCGGTTGGCCTTGGTGGATAGAGTTACTTGGTACATGTTGCTGGTGGGAGTTGACAGGTATGCTGTGGAATTTATCGAGTCATGCGAAAGCGTATCAGATACCATGAGTATAAAAAGATGAAGATGTTGAATCCCTTTGGTTTCTTTGTATTTTGAATCCCCTTGGTAAAATTCGTGGCTTTGCTGCTAATTATATGCTTGTTGATTTGTTTTACAGTATTGATGGATTCTTTTGTTTTTTTTTCCTTTATGGGTATGTTTATTTTTCGAACTATAGGAACAATCACAGGTGGAATTGGAGATAAGATTGTTGGAGGCTCTTGAAATCTATCCCCCTGCCAAATTGAGAGGTATTATTTGTAGGAAGTGTTATGTGTCATTGCTCCTGTTATATGTTTCCTCTTTTAAGTTTTGCTGTGTTTTCTGTTATTAAAGCTGAAAAGGTGGCAACTTTATGGTAGTTTGTCTAGTTCATAAGTAAAATTCACAGTAAAATGTGGTGGATAGAAACTCGTGGTGTAATCTGGAACTTGCATTACATTTTTCTTTCTGCTGTGAGAGTGATCAGACGTTTAACATTGCAGGCATCCATCGTCATTTTGTCCTATACGGCTTAACAGAGCATCTGCGTAGAAGGTTACTAGGCTACATTTGTTCTTTTGTTTTATTAACTCTTCATTTTGTGCTTTGTGATTGAGCTTAGCTCATGCCAACACTCTCAGAAAAGAAATAAGAAAGCTGAGGCACGTGTAAAAAGTGTACCTAAGAATGAAGAAACTTAACATAGCTTTATCATTTGTCTTTCAACACTGGATTTTTTGTCACAGCTTCAATAGGCAATTTGCTCCTGATGATGTTTTGAAGCTGCTGGATCGCTTCTACAACTTGGATATGGTGGTAAGTGTTATTGATTTTACTTTCTATTTAACTTCAATCTTCACAACTTTTCCGTTATTAAGTATTTGATTTGAAAGACTGCTTGTTTGAGCAGAAATATTTACATATGTAAAGCCATTCTTCCTGCTCCACAAACAGCAGGATCATAACTGATATACCAATATACAGTGTTGCACGTTCTTGACGTAATAATCCGAGTTTCTTAGAAATCAAATCCTCTTAATTTATCATAGTTAATCCCGTGTATTCCAAGAGACCAAAATTAGGACATTGGAAAGTGACATCAAGGAGACAGATTTATTCAATTTGTTGCTAAATTTTGGCCCTGTACAGCATACATCCTATTTATATTTGATCTCGATAGAAAGAGATTGAATACTTGAAACAAAACTTGTTGGACTACATAATTTAATTTGAGAATTACGTCTCACTTCATGAAAATATGCTTATGTTACTATTCGTCATTTTATTTCATAGAACCTTCAACTTATGCTTCTTTTCTGTTTCATTGGCTAGAATCTTGGTTTAATGGGGCAATCTTTTCAGTAGTTACGTGGAACGAGTGTTCTTATAGTTGTATTCATTTTTACTAATTTCAGAAACCAGAGGACGAGGACTCTGAAATCCTAAATCAAGAGGAAGAGTTTTGCCTACCTCACAGTTATTTCTCGAGGGACGAACCTTGAACTAAGTTGGAATCGATATGGATATTGAACTTCTACATATGGCAGTTTTTGTATAGTAGTATCTGGGTGGTTCAAT-T-TTTTTTTTTTTGATGCCATAAGAGATTCTGCATCTATTAATCTTACTGAAAAGTTTGTATGCATGCTGATATTTCAGCTCTCCTTATATATACAGTAGACAGTTGGATCTTTTTACA</genome_strand>
        <mrna_strand>ATATATA-AAAAAATCAAATCTTTGATGGATGATTCTCCAAAAAAGTGGTAAATTTTCCATTCCCAGAAAATCTCAAGAACCAAAAAGCAAATGGGGCAAAATACTGGTGCAAGTGGCAAAGGGAAGAAAGAAGCAGAAACGGAAAAGGAAACAGTGGTAGAAGAAGAAGAAGAGGAAGTTGAAGAAGGTGGAGAAGAAGCTGAACAAGATGGAATGTCTGTTCATTCTCCTTGTAAACCTGCATCTTCTGCTCTTCGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATCACAGGTGGAATTGGAGATAAGATTGTTGGAGGCTCTTGAAATCTATCCCCCTGCCAAATTGAGAG..........................................................................................................................................................................................................................................GCATCCATCGTCATTTTGTCCTATACGGCTTAACAGAGCATCTGCGTAGAAG...............................................................................................................................................................................................CTTCAATAGGCAATTTGCTCCTGATGATGTTTTGAAGCTGCTGGATCGCTTCTACAACTTGGATATGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGAGGACGAGGACTCTGAAATCCTAAATCAAGAGGAAGAGTTTTGCCTACCTCACAGTTATTTCTCGAGGGACGAACCTTGAACTAAGTTGGAATCGATATGGATATTGAACTTCTACATATGGCAGTTTTTGTATAGTAGTATCTGGGTGGTTCAATATATTTTTTTTTTTGATGCCATAAAAAATTCTGCATCTATTAATCTTACTGAAAAGTTTGTATGCATGCTGATATTTCAGCTCTCCTTATATATACAGTAGACAGTTGGATCTTTTTAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329419" ref_strand="+" ref_description="SGN-E329419 [cTOD-11-A15]">
      <seq>cattgaatatggcttctcaaaaggaaagagaaactcatgtttacatggccaagctcgccgagcaagctgagcgttacgatgagatggttgagagtatgaagaaagttgcaaaacttgatgtggaattgacagtggaggagaggaacttgctttctgttggctacaagaatgtcattggagctcgaagagcttcatggcgtattatgtcttccattgaacagaaagaagagtcgaaagggaacgagcaaaatgtcaagctgataaaaggctatcgtcaaaaggtcgaggaagagctctcgaagatttgctctgatattcttgatatcattgacaaacatctcattccatctgctggcactggtgaagctactgtcttctattacaaaatgaaaggtgactattttcgttacctcgctgagttcaagactgattccgaaaggaaagaggcttctgaacaatcattgaaaggctatgaggctgctactgccactgcaaacactgatctctcttcaactcatccgattcgtcttggtcttgctttgaacttctctgttttctactatgagatcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53022" stop="50597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52722" g_stop="52642" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52641" i_stop="51974" i_length="668">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51973" g_stop="51667" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="388" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51666" i_stop="51163" i_length="504">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51162" g_stop="51075" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="476" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51074" i_stop="50996" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50995" g_stop="50897" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="575" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E329419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52722" e_stop="52642"/>
          <exon e_start="51973" e_stop="51667"/>
          <exon e_start="51162" e_stop="51075"/>
          <exon e_start="50995" e_stop="50897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAATATGGCTTCTCAAAAGGAAAGAGAAACTCATGTTTACATGGCCAAGCTCGCCGAGCAAGCTGAGCGTTACGATGGTTAGTTTCATTTATTTTCCCAAACCTCTCTATAACAATGTCGTTTGTATGGATATCTTTTTGGATGTTGTATATAACGAAATGATGTTATAGAGAACATATAATATACTATGAAAAATTAATCTTTATAGGAAAATGTTACAGAAGGGTTTGACTGTACTTGAGACGGATTCTTTGATTTAGAAGTAGTAGATGCTCCTCTTAATTTTATACATGATTATAGTAGTAATTTCTATGTACAAGCTTTGGAAAACAGAACATATGAGTACAATGATGAAAAATTGGTTACTTACTCGCGATATGCATCAAAGCAATAAATGCATGACATGTGTCTTTTATATAAAAAAAAATCCGGTGATATTTATGATCTAGTGTGATGTATGGAATATATGACGAAGGTAGATCTATTGATTACCTTTCAATGCACAATTAATTAGACATGCAATTGCTTCGATTTGAATGATCAAGTGATGACTCGGAAAAAAGAAGAAAAAACCGAAGTGACTTAGTCACTTTCTGATATAATAACTATTAGTTGAGTGACAGTATGAAAAATCAATTCGATTTTTTATTTTTTGTTGATTGATAACTAAATAGTAAAAAGTTGAATCTTGGTTTGTGAATACTGAGTAGTTCTTAAATGGAATGTATAAATCTTGATTTTACAGAGATGGTTGAGAGTATGAAGAAAGTTGCAAAACTTGATGTGGAATTGACAGTGGAGGAGAGGAACTTGCTTTCTGTTGGCTACAAGAATGTCATTGGAGCTCGAAGAGCTTCATGGCGTATTATGTCTTCCATTGAACAGAAAGAAGAGTCGAAAGGGAACGAGCAAAATGTCAAGCTGATAAAAGGCTATCGTCAAAAGGTCGAGGAAGAGCTCTCGAAGATTTGCTCTGATATTCTTGATATCATTGACAAACATCTCATTCCATCTGCTGGCACTGGTGAAGCTACTGTCTTCTATTACAAAATGTAAGTCAATCGAGTTTTCTTTTTAAACCGTGCTTCCTATAGTATCATCCCCTATGGTCATTGTTATACCAACATTTGCTTTGTTATAATCGATGGACAAGGTAATAGGGTTAACTAGTAGATAAGTTGGTGGGAGGTAGATAATACCCCGTGGAACTAGTCGATGTGGATGCAAGTTGGCTACGGACTGTGATTTGAAAAAGAGAAAAGAAAAAGAGGTTGAATATGGTTTGTGAAGAATCTGGCTTACATGTAATCTCCCAATCTCCGATCCCCGGGAGAGAACAAGGAGATTTATCACATCAATATGATGATTGAAATGAAAATCATAAGCACGACCGTGATCCTTGTGGTCCAACATAATCAAGCTGCCATCATCAACACTAACACAAGCATGAGACTTTTTGGTAGCGCCAGTGAATCAGATGTTTCAAAATCGAACTCTTTCAATTTTCGATATATTTTTAATAGATCTACCTTCTTATCTTTATCATTCTTGTTCAGGAAAGGTGACTATTTTCGTTACCTCGCTGAGTTCAAGACTGATTCCGAAAGGAAAGAGGCTTCTGAACAATCATTGAAAGGCTATGAGGCAAGTTACTCCTTAGTCGATTAATCGATGCACATTACTTGGAATACCACTTGATTTTGCATCTTTTTGCTCCTTTTAGGCTGCTACTGCCACTGCAAACACTGATCTCTCTTCAACTCATCCGATTCGTCTTGGTCTTGCTTTGAACTTCTCTGTTTTCTACTATGAGATCATGAAC</genome_strand>
        <mrna_strand>CATTGAATATGGCTTCTCAAAAGGAAAGAGAAACTCATGTTTACATGGCCAAGCTCGCCGAGCAAGCTGAGCGTTACGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTTGAGAGTATGAAGAAAGTTGCAAAACTTGATGTGGAATTGACAGTGGAGGAGAGGAACTTGCTTTCTGTTGGCTACAAGAATGTCATTGGAGCTCGAAGAGCTTCATGGCGTATTATGTCTTCCATTGAACAGAAAGAAGAGTCGAAAGGGAACGAGCAAAATGTCAAGCTGATAAAAGGCTATCGTCAAAAGGTCGAGGAAGAGCTCTCGAAGATTTGCTCTGATATTCTTGATATCATTGACAAACATCTCATTCCATCTGCTGGCACTGGTGAAGCTACTGTCTTCTATTACAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTGACTATTTTCGTTACCTCGCTGAGTTCAAGACTGATTCCGAAAGGAAAGAGGCTTCTGAACAATCATTGAAAGGCTATGAG...............................................................................GCTGCTACTGCCACTGCAAACACTGATCTCTCTTCAACTCATCCGATTCGTCTTGGTCTTGCTTTGAACTTCTCTGTTTTCTACTATGAGATCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214184" ref_strand="+" ref_description="SGN-E214184 [cLEC-77-I21]">
      <seq>caactttcattgacgttggcaccaatttggtgccacaccctctgttcaagagcgtcaccgacatgaaggttttaactatccgatacggaacttaatcgtactctctaaagaaaaggaagtgaaggatgagaccccatgtcactatgctttttgagactctgcatagatcatgtatctactactgacggttatatattttgtagtccagtcgtttgctcaaaatatattgttctgaatagattagtataattgacaaccataatggtgatgtgccttcaatttcatagcatagtcaccctagtagacccatacttagttgtttcaccctagtagacccatacttagttgtcaaattcacacatcaaaaaaatagtcataactatgcgcaacttgcaccctctagcgaggttattcttcatcttttatattctgattgaacatccatcttaattcatggcatagacatttctgcgccatttaacttgtgggtgtgttagacagtagtggcataatgttcgctctcatataacactgctagtcttatagttgttccataaaacttaccttttcgtttagtagtaatcattctatcatgtaaaaccttgatagcccttttccatttcaaccataccatttttgaagagcatctcagtatctcacctagatatctataaacactactcaagcacctcaaccccgtctaatctcacatcatattcactcttcttattttgactaagctcgtactgcattcggtcttttgctttttctaatcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69752" stop="68372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69452" g_stop="68672" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E214184" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69452" e_stop="68672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCATTGACGTTGGCACCAATTTGGTGCCACACCCTCTGTTCAAGAGCGTCACCGACATGAAGGTTTTAACTATCCGATACGGAACTTAATCGTACTCTCTAAAGAAAAGGAAGTGAAGGATGAGACCCCATGTCACTATGCTTTTTGAGACTCTGCATAGATCATGTATCTACTACTGACGGTTATATATTTTGTAGTCCAGTCGTTTGCTCAAAATATATTGTTCTGAATAGATTAGTATAATTGACAACCATAATGGTGATGTGCCTTCAATTTCATAGCATAGTCACCCTAGTAGACCCATACTTAGTTGTTTCACCCTAGTAGACCCATACTTAGTTGTCAAATTCACACATCAAAAAAATAGTCATAACTATGCGCAACTTGCACCCTCTAGCGAGGTTATTCTTCATCTTTTATATTCTGATTGAACATCCATCTTAATTCATGGCATAGACATTTCTGCGCCATTTAACTTGTGGGTGTGTTAGACAGTAGTGGCATAATGTTCGCTCTCATATAACACTGCTAGTCTTATAGTTGTTCCATAAAACTTACCTTTTCGTTTAGTAGTAATCATTCTATCATGTAAAACCTTGATAGCCCTTTTCCATTTCAACCATACCATTTTTGAAGAGCATCTCAGTATCTCACCTAGATATCTATAAACACTACTCAAGCACCTCAACCCCGTCTAATCTCACATCATATTCACTCTTCTTATTTTGACTAAGCTCGTACTGCATTCGGTCTTTTGCTTTTCTTAAATCCCTTT</genome_strand>
        <mrna_strand>CAACTTTCATTGACGTTGGCACCAATTTGGTGCCACACCCTCTGTTCAAGAGCGTCACCGACATGAAGGTTTTAACTATCCGATACGGAACTTAATCGTACTCTCTAAAGAAAAGGAAGTGAAGGATGAGACCCCATGTCACTATGCTTTTTGAGACTCTGCATAGATCATGTATCTACTACTGACGGTTATATATTTTGTAGTCCAGTCGTTTGCTCAAAATATATTGTTCTGAATAGATTAGTATAATTGACAACCATAATGGTGATGTGCCTTCAATTTCATAGCATAGTCACCCTAGTAGACCCATACTTAGTTGTTTCACCCTAGTAGACCCATACTTAGTTGTCAAATTCACACATCAAAAAAATAGTCATAACTATGCGCAACTTGCACCCTCTAGCGAGGTTATTCTTCATCTTTTATATTCTGATTGAACATCCATCTTAATTCATGGCATAGACATTTCTGCGCCATTTAACTTGTGGGTGTGTTAGACAGTAGTGGCATAATGTTCGCTCTCATATAACACTGCTAGTCTTATAGTTGTTCCATAAAACTTACCTTTTCGTTTAGTAGTAATCATTCTATCATGTAAAACCTTGATAGCCCTTTTCCATTTCAACCATACCATTTTTGAAGAGCATCTCAGTATCTCACCTAGATATCTATAAACACTACTCAAGCACCTCAACCCCGTCTAATCTCACATCATATTCACTCTTCTTATTTTGACTAAGCTCGTACTGCATTCGGTCTTTTGCTTTT-TCTAATCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689242" ref_strand="+" ref_description="SGN-E689242 [t3_tus_80_L12]">
      <seq>gaggattcaaacttctggaaattagctctgagaaattattggtctttgctatcacccttgattttctctgaccatccgaaaaggccaggagatgatgatccattacctccatataatatggtgcgtaatgtcatggacatgaatgctcattatggcggtcttagtgctgcattaatggaggcaagaaaagccgtatgggtgatgaatgtggttcctcttggggcacgtaatacacttcctctcatacatgatcaaggttttgccggtgttctgcataactggtgtgaacccttccctacatatccccgaacgtatgatttgctccatgcaaatgggctcctttcccatattgcttcacaaaaatgcagcatgtttgaactacttctggagatggatcgtattttaaggcctgagggatggattattctttctgatacattgggtacaatagagaaagcacgtacattagctgcccaaatccgctgggaagccagggtgatcgacctccagaatggaagtgaccagcgactacttgtatgccaaaaaccattcgtgaggaagtgatattctgcaaaatgcataacttcaccaatccnatggttgtccagtcctttttaacactggtaagttcttaacttctcgtgtaaactaggaataagtatgaaaacgcggaagttcaattgaaaatctgtaaatccgcgctttctgtcatatatatttttttcatgaagtggactacattttgatattacaaggccacaagctgcgcgttgacgtctgaatctcgtggtcctcgcataatatggtgctcacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="76132" stop="74175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75832" g_stop="75552" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75551" i_stop="75095" i_length="457">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75094" g_stop="74962" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="414" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74961" i_stop="74879" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74878" g_stop="74475" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="818" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E689242" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75832" e_stop="75552"/>
          <exon e_start="75094" e_stop="74962"/>
          <exon e_start="74878" e_stop="74475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTGGTGAGACATTGTTATAAATGTTCTAAAGACTTGCAAATACACGTGTAAAATTGGAAAGAATGCTTTCATGTTCTCAAGTTTCTTGATAGTAAAATTTTACTGTATATTTTCTGTTTCGTATTAGTTAGCGGAAGCAATTACATCTTTCTGGAATGATCCTGTTGTTTTCCATGCGTACTTTAATGTTGACTGTCAGCCTGAATAGGTTTTGGTTGTGATTGTAATCTTCTCTGTCACCAGAATTAATATCTTCTGCTTAGTGATGTCTTTATATAGTCAGTGAGAATGTATTTAAGATCATAAGAAGCTCGATCATATACTCACCTGGATATATTCTTAAAATTTGAGTCCTTTCAGTTGAATTCTCATAAAACAATTGGAGTTGAACTGTTTTTATTGCTAGATGCTCGAAATATTCTGGTTACTCATTCCGACTGTTGTTCAAACATTGGTGTAGGTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGGAGATGGATCGTATTTTAAGGCCTGAGGTAATATTCCATTTGCTCTTTTGGTTTACTTTTTCTTCGAAGGTTAGCTTGTTTCCCTCAATGTAAAAATATACTTGTTGCAGGGATGGATTATTCTTTCTGATACATTGGGTACAATAGAGAAAGCACGTACATTAGCTGCCCAAATCCGCTGGGAAGCCAGGGTGATCGACCTCCAGAATGGAAGTGACCAGCGACTACTTGTATGCCAAAAACCATTCGTGAGGAAGTGATATTCTGCAAAATGCATAACTTCACCAATCCAATGGTTGTCCAGTCCTTTTTAACACTGGTAAGTTCTTAACTTCTCGTGTAAACTAGGAATAAGTATGAAAACGCGGAAGTTCAATTGAAAATCTGTAAATCCGCGCTTTCTGTCATATATATTTTTTTCATGAAGTGGACTACATTTTGATATTACAAGGCCACAAGCTGCGCGTTGACGTCTGAATCTCGTGGTCCTCGCATAATATGGTGCTCACAAAGC</genome_strand>
        <mrna_strand>GAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGGAGATGGATCGTATTTTAAGGCCTGAG...................................................................................GGATGGATTATTCTTTCTGATACATTGGGTACAATAGAGAAAGCACGTACATTAGCTGCCCAAATCCGCTGGGAAGCCAGGGTGATCGACCTCCAGAATGGAAGTGACCAGCGACTACTTGTATGCCAAAAACCATTCGTGAGGAAGTGATATTCTGCAAAATGCATAACTTCACCAATCCNATGGTTGTCCAGTCCTTTTTAACACTGGTAAGTTCTTAACTTCTCGTGTAAACTAGGAATAAGTATGAAAACGCGGAAGTTCAATTGAAAATCTGTAAATCCGCGCTTTCTGTCATATATATTTTTTTCATGAAGTGGACTACATTTTGATATTACAAGGCCACAAGCTGCGCGTTGACGTCTGAATCTCGTGGTCCTCGCATAATATGGTGCTCACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325170" ref_strand="+" ref_description="SGN-E325170 [cTOC-13-B18]">
      <seq>gagggaggattcaaacttctggaaattagctctgagaaattattggtctttgctatcacccttgattttctctgaccatccgaaaaggccaggagatgatgatccattacctccatataatatggtgcgtaatgtcatggacatgaatgctcattatggcggtcttagtgctgcattaatggaggcaagaaaagccgtatgggtgatgaatgtggttcctcttggggcacgtaatacacttcctctcatacatgatcaaggttttgccggtgttctgcataactggtgtgaacccttccctacatatccccgaacgtatgatttgctccatgcaaatgggctcctttcccatattgcttcacaaaaatgcagcatgtttgaactacttctggagatggatcgtattttaaggcctgagggatggattattctttctgatacattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="76132" stop="74550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75836" g_stop="75552" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75551" i_stop="75095" i_length="457">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75094" g_stop="74962" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="418" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74961" i_stop="74879" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74878" g_stop="74850" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="447" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E325170" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75836" e_stop="75552"/>
          <exon e_start="75094" e_stop="74962"/>
          <exon e_start="74878" e_stop="74850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTGGTGAGACATTGTTATAAATGTTCTAAAGACTTGCAAATACACGTGTAAAATTGGAAAGAATGCTTTCATGTTCTCAAGTTTCTTGATAGTAAAATTTTACTGTATATTTTCTGTTTCGTATTAGTTAGCGGAAGCAATTACATCTTTCTGGAATGATCCTGTTGTTTTCCATGCGTACTTTAATGTTGACTGTCAGCCTGAATAGGTTTTGGTTGTGATTGTAATCTTCTCTGTCACCAGAATTAATATCTTCTGCTTAGTGATGTCTTTATATAGTCAGTGAGAATGTATTTAAGATCATAAGAAGCTCGATCATATACTCACCTGGATATATTCTTAAAATTTGAGTCCTTTCAGTTGAATTCTCATAAAACAATTGGAGTTGAACTGTTTTTATTGCTAGATGCTCGAAATATTCTGGTTACTCATTCCGACTGTTGTTCAAACATTGGTGTAGGTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGGAGATGGATCGTATTTTAAGGCCTGAGGTAATATTCCATTTGCTCTTTTGGTTTACTTTTTCTTCGAAGGTTAGCTTGTTTCCCTCAATGTAAAAATATACTTGTTGCAGGGATGGATTATTCTTTCTGATACATTGGG</genome_strand>
        <mrna_strand>GAGGGAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGGAGATGGATCGTATTTTAAGGCCTGAG...................................................................................GGATGGATTATTCTTTCTGATACATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729428" ref_strand="+" ref_description="SGN-E729428 [LA21AB06]">
      <seq>aatcatttgggatagcaaagatgggctgtttcttattgaaattgaccgtttactcaagcctggtggttactttgtcttaacctcacctacaacccagcagcaggatagtactaccaatacaaagaacggaattacatctagttcactggaaggattcactaagaagctctgttggtctcttttggcacagcaagaagagacgtttatttggcagaagacagctgattctcagtgttatacatccagtcagggtgagataccagtttgtaaaggaaatgagatgcaaatgtactaccaaccacttgcacactgtatatctgggacaacgagtcgctggtgggttccaattcatagcaaatctgatcatctgaactcaactgagcttgaaattcatgggctccatcctgatgatttcttcgaggattcaaacttctggaaattagctctgagaaattattggtctttgctatcacccttgattttctctgaccatccgaaaaggccaggagatgatgatccattacctccatataatatggtgcgtaatgtcatggacatgaatgctcattatggcggtcttagtgctgcattaatggaggcaagaaaagccgtatgggtgatgaatgtggttcctcttggggcacgtaatacacttcctctcatacatgatcaaggttttgccggtgttctgcataactggtgtgaacccttccctacatatccccgaacgtatgatttgctccatgcaaatgggctcctttcccatattgcttcacaaaaatgcagcatgtttgaactacttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="78133" stop="74688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77833" g_stop="77814" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77813" i_stop="76858" i_length="956">
            <donor d_prob="0.798" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76857" g_stop="76632" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="246" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76631" i_stop="76145" i_length="487">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76144" g_stop="75996" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="395" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75995" i_stop="75856" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75855" g_stop="75552" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="699" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75551" i_stop="75095" i_length="457">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75094" g_stop="74988" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="806" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E729428" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77833" e_stop="77814"/>
          <exon e_start="76857" e_stop="76632"/>
          <exon e_start="76144" e_stop="75996"/>
          <exon e_start="75855" e_stop="75552"/>
          <exon e_start="75094" e_stop="74988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTTGGGATAGCAAAGGTATTGTTGCAGTTGTGCTTTGAGGAAGTACGATTTTCCTTTTGGCATTTATGAGTGTCTTATCTTATTATATTGGGATAATGCCCAAGTACCCCCTCAACCTATGTCCGAAATCTCAGAGACACACTTATACAATACTAAGGTCCTATTACCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCTTACGTGGCACTATCTTGTGGGCTCAACGATAGTTGACTTTTTTTTCGAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACATATAAAATAAGTTCAGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGGGTATTTTCCCTATTATATTTATAATTTCCATGTATTAAATATGATATGTACTTCATTTCAATTTTTTTTTTCATGATGTCGATTGTCAAATCCACTCCTAGAAACATTACATGTAATCCTTTTCCAATCTGTTATATGATTTACCCCCTACATTGGTAACATAGTTTCCAAATAGAATAATGTTGCTTGATATTGCCTATTTAGCTATACTTTACTACTGTCCTGCTAATCGGTTTTCCTTAAAATTCAAATCCTGCTCTCTCTCACCTGAGCTGGACCGCAGCCTGAAAGCTTAGACTATCTTGTGTGTCAGAGATTGATCTTAAGCTGGGGCTAAATAGATATTATTATTTAGAAACCAACACCATATTCATATATACAGATGCATTCTAGTCTATAGTTGATTTTATACTTTCACATTTTCTGTAGGTGGAATCAAAAGCGAGTTTGTTTTCACCTTTCAGCTATCATAATGATACAATTTCAGATCTCATATCGCCTTCTAAACATTTAAATATCCATTCAATCCTGTTAAAATTTGAAAATAAATGTAATAGCATGGAACTGACAATGATTTGACAAAACAGATGGGCTGTTTCTTATTGAAATTGACCGTTTACTCAAGCCTGGTGGTTACTTTGTCTTAACCTCACCTACAACCCAGCAGCAGGATAGTACTACCAATACAAAGAACGGAATTACATCTAGTTCACTGGAAGGATTCACTAAGAAGCTCTGTTGGTCTCTTTTGGCACAGCAAGAAGAGACGTTTATTTGGCAGAAGACAGCTGATTCTCAGTGTTATACATCCAGGTAAGGCTACTAAGAAAGGCAATGTGTGTAGCTAATTTACTCCCACTCTCCGACTGTGTTCGGTTTCTCGCTTCCTCGACTTTAGTTAAATCAAGTTATAAGCTAATTTCAAGATTAAAAAGAAAGAACGAAAGTTTTGCAGAGTTTCAAATCTAGAAATATAATACCTAATAAGGTACAAAAGACCATATTCTTTTGTTAAGGCATTACCCCTACCCCCCAACCCATGCGCACACACACATCCAAACATTTCTTATGGATCATGGATAGGTTTGAAACTGTTGTCATTTGTGCACTTGTTTATAAAGTATTGTATGCCTATGCCCCCAATTGCCCTATATCATTTACAAAACCAAAAAAGTTGCCGTTTATGCTCTGGTGTTAATATTCGTGTGTTTTGATGTGTTTCCAAGTTCAGTTTTGCCTTTTATTTGTCTTCTTTTTCCACTTAACTTCCATGACAAGAATTTTCGTTTAATTGTAGCAGTCAGGGTGAGATACCAGTTTGTAAAGGAAATGAGATGCAAATGTACTACCAACCACTTGCACACTGTATATCTGGGACAACGAGTCGCCGGTGGGTTCCAATTCATAGCAAATCTGATCATCTGAACTCAACTGAGCTTGAAATTCATGGCAAGTGTTCTTTCTGTTTTCCCAAAACTTGATTGGTTGTTGCAATGTTTTCAGTTTTATATTCGTTCTCCAATTCTGGGTTATTTTGTCCCTCTATTTTTAGCAGTCATTTTTTTTACCAATCTTTTGCTTTGTGACAGGGCTCCATCCTGATGATTTCTTCGAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTGGTGAGACATTGTTATAAATGTTCTAAAGACTTGCAAATACACGTGTAAAATTGGAAAGAATGCTTTCATGTTCTCAAGTTTCTTGATAGTAAAATTTTACTGTATATTTTCTGTTTCGTATTAGTTAGCGGAAGCAATTACATCTTTCTGGAATGATCCTGTTGTTTTCCATGCGTACTTTAATGTTGACTGTCAGCCTGAATAGGTTTTGGTTGTGATTGTAATCTTCTCTGTCACCAGAATTAATATCTTCTGCTTAGTGATGTCTTTATATAGTCAGTGAGAATGTATTTAAGATCATAAGAAGCTCGATCATATACTCACCTGGATATATTCTTAAAATTTGAGTCCTTTCAGTTGAATTCTCATAAAACAATTGGAGTTGAACTGTTTTTATTGCTAGATGCTCGAAATATTCTGGTTACTCATTCCGACTGTTGTTCAAACATTGGTGTAGGTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGG</genome_strand>
        <mrna_strand>AATCATTTGGGATAGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCTGTTTCTTATTGAAATTGACCGTTTACTCAAGCCTGGTGGTTACTTTGTCTTAACCTCACCTACAACCCAGCAGCAGGATAGTACTACCAATACAAAGAACGGAATTACATCTAGTTCACTGGAAGGATTCACTAAGAAGCTCTGTTGGTCTCTTTTGGCACAGCAAGAAGAGACGTTTATTTGGCAGAAGACAGCTGATTCTCAGTGTTATACATCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTGAGATACCAGTTTGTAAAGGAAATGAGATGCAAATGTACTACCAACCACTTGCACACTGTATATCTGGGACAACGAGTCGCTGGTGGGTTCCAATTCATAGCAAATCTGATCATCTGAACTCAACTGAGCTTGAAATTCATG............................................................................................................................................GGCTCCATCCTGATGATTTCTTCGAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738978" ref_strand="+" ref_description="SGN-E738978 [LC15CG03]">
      <seq>atctttctttatatgtcaataccaatcccaactctgcatagctttctgcaactgtcacaatatatatatattgagaaaatagagagacattcctacattttatgtccatcccatttatcaagactcaatctttagggtgatctgaggatttggattgcttggtttgtaagggaatagagagagttgtttcagaattggcattggttggattggttgtgtgttgtgtgagagaattgtgagtcattggtagttgatgtgtcataatgttttaggaggggcttttcactgatctgccatttgattgttgtacttggtgattgtggagacttgtggtattggaatttcacctgatttgtaatcttgtttagtttggtatgattggagaatttctttatgttgagcttaggtagtggtttaaacagatgccagttgaaattgtttggattttgggtgatatatatgggagatggtctctgatgatatattacatttttcatagttgttggaggttcaggttgaagcaatagctaccacctagtggtctaattcaactcgattttcgaaggggttcttgaaacttggccatgagaagccctttggtcaataaactatcattaattttcggccctagaccgccactcaaccgaatactcttgtgtctggtcagtgtctgtgtgctaatagcattgttatcatcattttctactactacctttgaatcgggcgacttcctatgcaaagcctgatatctatacaaattatagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80066" stop="78475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79766" g_stop="79630" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79629" i_stop="79409" i_length="221">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79408" g_stop="78775" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="770" r_length="635" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E738978" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79766" e_stop="79630"/>
          <exon e_start="79408" e_stop="78775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTATATGTCAATACCAATCCCAACTCTGCATAGCTTTCTGCAACTGTCACAATATATATATATATTGAGAAAATAGAGAGACATTCCTACATTTTATGTCCATCCCATTTATCAAGACTCAATCTTTAGGTACAATAAACAAAAACCCTAAGCTTTTATGCTTTATTTGATTGTCATTTGTTGTAAAGATTGAATCTTTTTGGTTAAAGTTGTAATTTTTTGGTTTAAATGGCATTTTGGATGTGGATCTGATCTGGGGTTTTTGATCTTTTTGTGTTGATGATTGGAATGGTTGAGAATTTTGAATCTTGATTTGTGATTGGTCTTTTTCATTTGGTGTCTTTTTGCAGGGTGATCTGAGGATTTGGATTGCTTGGTTTGTAAGGGAATAGAGAGAGTTGTTTCAGAATTGGCATTGGTTGGATTGGTTGTGTGTTGTGTGAGAGAATTGTGAGTCATTGGTAGTTGATGTGTCATAATGTTTTAGGAGGGGCTTTTCACTGATCTGCCATTTGATTGTTGTACTTGGTGATTGTGGAGACTTGTGGTATTGGAATTTCACCTGATTTGTAATCTTGTTTAGTTTGGTATGATTGGAGAATTTCTTTATGTTGAGCTTAGGTAGTGGTTTAAACAGATGCCAGTTGAAATTGTTTGGATTTTGGGTGATATATATGGGAGATGGTCTCTGATGATATATTACATTTTTCATAGTTGTTGGAGGTTCAGGTTGAAGCAATAGCTACCACCTAGTGGTCTAATTCAACTCGATTTTCGAAGGGGTTCTTGAAACTTGGCCATGAGAAGCCCTTTGGTCAATAAACTATCATTAATTTTCGGCCCTAGACCGCCACTCAACCGAATACTCTTGTGTCTGGTCAGTGTCTGTGTGCTACTAGTATTGTTATCATCATTTTCTACTACTACCTTTGACTC-GGCGACTTCCTATGCAAAGCCTGATATCTATACAAATTATAGAAAGCT</genome_strand>
        <mrna_strand>ATCTTTCTTTATATGTCAATACCAATCCCAACTCTGCATAGCTTTCTGCAACTGTCACAATATATATATAT-T-GAGAAAATAGAGAGACATTCCTACATTTTATGTCCATCCCATTTATCAAGACTCAATCTTTAG.............................................................................................................................................................................................................................GGTGATCTGAGGATTTGGATTGCTTGGTTTGTAAGGGAATAGAGAGAGTTGTTTCAGAATTGGCATTGGTTGGATTGGTTGTGTGTTGTGTGAGAGAATTGTGAGTCATTGGTAGTTGATGTGTCATAATGTTTTAGGAGGGGCTTTTCACTGATCTGCCATTTGATTGTTGTACTTGGTGATTGTGGAGACTTGTGGTATTGGAATTTCACCTGATTTGTAATCTTGTTTAGTTTGGTATGATTGGAGAATTTCTTTATGTTGAGCTTAGGTAGTGGTTTAAACAGATGCCAGTTGAAATTGTTTGGATTTTGGGTGATATATATGGGAGATGGTCTCTGATGATATATTACATTTTTCATAGTTGTTGGAGGTTCAGGTTGAAGCAATAGCTACCACCTAGTGGTCTAATTCAACTCGATTTTCGAAGGGGTTCTTGAAACTTGGCCATGAGAAGCCCTTTGGTCAATAAACTATCATTAATTTTCGGCCCTAGACCGCCACTCAACCGAATACTCTTGTGTCTGGTCAGTGTCTGTGTGCTAATAGCATTGTTATCATCATTTTCTACTACTACCTTTGAATCGGGCGACTTCCTATGCAAAGCCTGATATCTATACAAATTATAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314878" ref_strand="+" ref_description="SGN-E314878 [cTOA-31-G9]">
      <seq>caatcccaactctgcatagctttctgcaactgtcacaatatatatatatattgcagaaaatagagagacattcctacattttatgtccatcccatttatcaagactcaatctttagggtgatctgaggatttggattgcttggtttgtaagggaatagagagagttgtttcagaattggcattggttggattggttgtgtgttgtgtgagagaattgtgagtcattggtagttgatgtgtcataatgttttaggaggggcttttcactgatctgccatttgattgttgtacttggtgattgtggagacttgtggtattggaatttcacctgatttgtaatcttggttagtttggtatgattggagaatttctttatgttgagcttaggtagtggtttaaacagatgccagttgaaattgtttggattttgggtgatatatatgggagatggtctctgatgatatattacatttttcatagatgctggaggctcacgctgaagcaatagctaccacctagtggtctagttcaactcgattgtcgaacgggttcttgaaacttggccatgagaagccctttggtcaataaactatcattaattctcggccctagaccgccactcaaccgaatactcttgtgtcgggtcagagtctgtgcgctactagcattggtatcatcattttctactactacctttgactcggcgacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80044" stop="78514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79744" g_stop="79630" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79629" i_stop="79409" i_length="221">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79408" g_stop="78814" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="711" r_length="595" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E314878" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79744" e_stop="79630"/>
          <exon e_start="79408" e_stop="78814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCAACTCTGCATAGCTTTCTGCAACTGTCACAATATATATATATATTG-AGAAAATAGAGAGACATTCCTACATTTTATGTCCATCCCATTTATCAAGACTCAATCTTTAGGTACAATAAACAAAAACCCTAAGCTTTTATGCTTTATTTGATTGTCATTTGTTGTAAAGATTGAATCTTTTTGGTTAAAGTTGTAATTTTTTGGTTTAAATGGCATTTTGGATGTGGATCTGATCTGGGGTTTTTGATCTTTTTGTGTTGATGATTGGAATGGTTGAGAATTTTGAATCTTGATTTGTGATTGGTCTTTTTCATTTGGTGTCTTTTTGCAGGGTGATCTGAGGATTTGGATTGCTTGGTTTGTAAGGGAATAGAGAGAGTTGTTTCAGAATTGGCATTGGTTGGATTGGTTGTGTGTTGTGTGAGAGAATTGTGAGTCATTGGTAGTTGATGTGTCATAATGTTTTAGGAGGGGCTTTTCACTGATCTGCCATTTGATTGTTGTACTTGGTGATTGTGGAGACTTGTGGTATTGGAATTTCACCTGATTTGTAATCTTGTTTAGTTTGGTATGATTGGAGAATTTCTTTATGTTGAGCTTAGGTAGTGGTTTAAACAGATGCCAGTTGAAATTGTTTGGATTTTGGGTGATATATATGGGAGATGGTCTCTGATGATATATTACATTTTTCATAGTTGTTGGAGGTTCAGGTTGAAGCAATAGCTACCACCTAGTGGTCTAATTCAACTCGATTTTCGAAGGGGTTCTTGAAACTTGGCCATGAGAAGCCCTTTGGTCAATAAACTATCATTAATTTTCGGCCCTAGACCGCCACTCAACCGAATACTCTTGTGTCTGGTCAGTGTCTGTGTGCTACTAGTATTGTTATCATCATTTTCTACTACTACCTTTGACTCGGCGACTTC</genome_strand>
        <mrna_strand>CAATCCCAACTCTGCATAGCTTTCTGCAACTGTCACAATATATATATATATTGCAGAAAATAGAGAGACATTCCTACATTTTATGTCCATCCCATTTATCAAGACTCAATCTTTAG.............................................................................................................................................................................................................................GGTGATCTGAGGATTTGGATTGCTTGGTTTGTAAGGGAATAGAGAGAGTTGTTTCAGAATTGGCATTGGTTGGATTGGTTGTGTGTTGTGTGAGAGAATTGTGAGTCATTGGTAGTTGATGTGTCATAATGTTTTAGGAGGGGCTTTTCACTGATCTGCCATTTGATTGTTGTACTTGGTGATTGTGGAGACTTGTGGTATTGGAATTTCACCTGATTTGTAATCTTGGTTAGTTTGGTATGATTGGAGAATTTCTTTATGTTGAGCTTAGGTAGTGGTTTAAACAGATGCCAGTTGAAATTGTTTGGATTTTGGGTGATATATATGGGAGATGGTCTCTGATGATATATTACATTTTTCATAGATGCTGGAGGCTCACGCTGAAGCAATAGCTACCACCTAGTGGTCTAGTTCAACTCGATTGTCGAACGGGTTCTTGAAACTTGGCCATGAGAAGCCCTTTGGTCAATAAACTATCATTAATTCTCGGCCCTAGACCGCCACTCAACCGAATACTCTTGTGTCGGGTCAGAGTCTGTGCGCTACTAGCATTGGTATCATCATTTTCTACTACTACCTTTGACTCGGCGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225220" ref_strand="+" ref_description="SGN-E225220 [cLEL-17-P14](-)">
      <seq>atctgtgacgcgccacagattgatcttgataaggttcgtatatggcttgaggagctcctttgggataaaaagtatggcatggacgtttatcgttgcaagggaattttaagagtcagaaactcggatgaactccagcactttacagggcgtgagagaaatatatgaaattgttccaagtcgtaaatggagaaacgaagagattcagatgaacaaaatagtatttataggccgctttctcaatgaagagatccttttgcactcattacatacttgcattgttggaactaattgactcgcatagaattcgattaaatcctattttctatcgttaagatggaaaactaaatcaagaattctctatcttcatcattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84718" stop="82642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84418" g_stop="84386" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84385" i_stop="84054" i_length="332">
            <donor d_prob="0.685" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84053" g_stop="83943" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="145" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83942" i_stop="83240" i_length="703">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83239" g_stop="83158" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="227" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83157" i_stop="83087" i_length="71">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83086" g_stop="82942" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="372" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="388"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E225220" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84418" e_stop="84386"/>
          <exon e_start="84053" e_stop="83943"/>
          <exon e_start="83239" e_stop="83158"/>
          <exon e_start="83086" e_stop="82942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTGACGCGCAGCAGATTGATCTTGATAAGGTAACTTTTTGAAAGGGGTGCTGGTATGTGCTTGCAGGGCTATGATTTTTGCTAGCTACTTCTGAGTTTTCTGATTCTTTCCTTGTAAAGCAAAAGGGGCTTGCTAATGGTGTCTGATTATCTTTTTCCTATCTAGGAAACTCGTCCTTTAGGGTCCTGTACATGCTAAAAGTTTTATGAAGATTAGTGCACCTCGAAGCCGTTTATTGTAGCTCATACATATTATTATCCTTTCTATGCTCCAGTTGTGGTTTTACCACAATTTCATACACAAAGGTTGACTCTTCACTATCTTGGATCACTAAAGTCCTCATTTCTCTTCTTGGCAATAGGTTCGTATATGGCTTGAGGAGCTCCTTTGGGATAAAAAGTATGGCATGGACGTTTATCGTTGCAAGGGAATTTTAAGAGTCAGAAACTCGGATGAACTCCA-CACTTTACAGGTAAGAAATCCTATGATAAAGATAACTTTCATCTCCACAAGCTGTTATCTTATAATAATATTTCACCTAACAAATTTGCTGTGCAGTAGTTAAGATTCACCGTCTCTTCGTTATTCTTACAGAAATAGAAAAACCTCTTTGCAAATTTTCCTGCGTAAACGGTAAAACAAGCCTCATACAAAAGCAAACAACTTTACTTGGAGCCTTGAACTTTCAAATTATTTTCCCTGGCCAGTCATTCTCATCTCTATTCATTTTCTTCATCAACAGATTAGAACACGTTTTAACAGAAAATATCACATCCTCCTTTCCCATCCAGTAAATCGAATCTTTCTGCAAGTTTAGTATAATATCTTCTCCAACTGATAATAGTAGTCTGACTCTTCCTATTTCCCAACCGTAAAAGTTCTCCTGAACTGAAAATTCCCAGCTTCTACCATCACAACAATCAGCAATCCTACAGTTTCTGTACAAATCCGAGAATGTTTCTGGTAAAGTGCACTCCTGATTCCACTTGTCTTCCCCGTTCCTTGTGTCTGCTATGCAAATGTGCATCAATATCTTTAATATTGCAACTTTACCAGTTATGTGAAGTAGCACAAAAAGCTATTCAGTGAAGCAAAACGTTATTATGTCTATGCTTTCTGGGTGTCTATGCTTTGTGTTTTCGTTGTCCTAACATGTTTACTACTGCGTCTGGCAGGGCGTGAGAGAAATATATGAAATTGTTCCAAGTCGTAAATGGAGAAACGAAGAGATTCAGATGAACAAAATAGTATTTATAGGTAAAGCTCATTTCAAACTATGAAGTTGATTTACAACTTTTTCTTCTTTTAATCTTGCCTTTCTTTTTCAGGCCGCTTTCTCAATGAAGAGATCCTTTTGCACTCATTACATACTTGCATTGTTGGAACTAATTGACTCGCATAGAATTCGATTAAATCCTATTTTCTATCGTTAAGATGGAAAACTAAATCAAGAATTCTCTATCTTCATCATTA</genome_strand>
        <mrna_strand>ATCTGTGACGCGCCACAGATTGATCTTGATAAG............................................................................................................................................................................................................................................................................................................................................GTTCGTATATGGCTTGAGGAGCTCCTTTGGGATAAAAAGTATGGCATGGACGTTTATCGTTGCAAGGGAATTTTAAGAGTCAGAAACTCGGATGAACTCCAGCACTTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGAGAGAAATATATGAAATTGTTCCAAGTCGTAAATGGAGAAACGAAGAGATTCAGATGAACAAAATAGTATTTATAG.......................................................................GCCGCTTTCTCAATGAAGAGATCCTTTTGCACTCATTACATACTTGCATTGTTGGAACTAATTGACTCGCATAGAATTCGATTAAATCCTATTTTCTATCGTTAAGATGGAAAACTAAATCAAGAATTCTCTATCTTCATCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708727" ref_strand="+" ref_description="SGN-E708727 [FA36CD10]">
      <seq>tcgactgaagacgctgtgcatggagaattccgacgaagaaccgccgctcgccgtcgaaatcaacgacgccgtcaactctaatcaactgacaaagagctcaaagcttccgccggttggcgtcaccgtcatcaccggctatctcggttccggaaaatccactttgatcaattacatattgaaaactcaacatgggaagaaaatagcagtgatacttaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgtgaagcatagtttggttcaagcattggagcaacttgttcagagaaaagagaggcttgatcatatattgctagagactactggtttggcaaaccctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccataatcactgttgttgatgcaaagaaccttcggtatcagctaaaaccaaatcctgactcctcttcatttcctgaagcttatttacaaatagcttttgcggatgttatcattcttaacaaggtagatctaatttctctagatgactcgggagcggtgctagaggaactggtgaaggaaatacgtgatgttaattcccttgctaatattattcattctgtgcggtgccaagttgacttatcgaagatattaaactgtcaggcatatgatcctactcatgctgctcatcttgaagcattgttaaaggagaacaaatctctaactactaaaggccttcatgacagtgaagtcagaacattgtgcatctgtgacgcgcagcagaatgatcttgataaagttcgtatatggcttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86812" stop="83735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86512" g_stop="86353" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="378" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="493" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="84959" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="583" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84769" g_stop="84596" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="757" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84595" i_stop="84506" i_length="90">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84505" g_stop="84386" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="877" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84385" i_stop="84054" i_length="332">
            <donor d_prob="0.685" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84053" g_stop="84035" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="896" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E708727" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86512" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="84959"/>
          <exon e_start="84769" e_stop="84596"/>
          <exon e_start="84505" e_stop="84386"/>
          <exon e_start="84053" e_stop="84035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCGGTAATTGATATGTTAGTTTCTCCATTCAATCATCTCAGGTTTCTAATTAGGCTTTCAATCTGTTTTTTCAACTTTCCAGTGGTTGTATTCCCATTCTTATAGGTGCTAACTAGGACTGTACTTCATATAATAGGTCTGGATTATGGATGAAATCATGTCTAACTCTTATTTGTGAACTGTTGTGTGTAGGATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGACTCGGGAGCGGTGCTAGAGGAACTGGTGAAGGAAATACGTGATGTTAATTCCCTTGCTAATATTATTCATTCTGTGCGGTGCCAAGTTGACTTATCGAAGATATTAAACTGTCAGGCATATGATCCTACTGTAAGCAATGATCCTTATACATGAAATTCAGCTATTGCTACATAGCAGACGGAAAGCTAAATAATCTTCCATTTTCCTGATTTTTTAAAGCATGCTGCTCATCTTGAAGCATTGTTAAAGGAGAACAAATCTCTAACTACTAAAGGCCTTCATGACAGTGAAGTCAGAACATTGTGCATCTGTGACGCGCAGCAGATTGATCTTGATAAGGTAACTTTTTGAAAGGGGTGCTGGTATGTGCTTGCAGGGCTATGATTTTTGCTAGCTACTTCTGAGTTTTCTGATTCTTTCCTTGTAAAGCAAAAGGGGCTTGCTAATGGTGTCTGATTATCTTTTTCCTATCTAGGAAACTCGTCCTTTAGGGTCCTGTACATGCTAAAAGTTTTATGAAGATTAGTGCACCTCGAAGCCGTTTATTGTAGCTCATACATATTATTATCCTTTCTATGCTCCAGTTGTGGTTTTACCACAATTTCATACACAAAGGTTGACTCTTCACTATCTTGGATCACTAAAGTCCTCATTTCTCTTCTTGGCAATAGGTTCGTATATGGCTTGAGG</genome_strand>
        <mrna_strand>TCGACTGAAGACGCTGTGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT.............................................................................................TTGATCAATTACATATTGAAAACTCAACATGGGAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG.............................................................................................................................................................................................GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGACTCGGGAGCGGTGCTAGAGGAACTGGTGAAGGAAATACGTGATGTTAATTCCCTTGCTAATATTATTCATTCTGTGCGGTGCCAAGTTGACTTATCGAAGATATTAAACTGTCAGGCATATGATCCTACT..........................................................................................CATGCTGCTCATCTTGAAGCATTGTTAAAGGAGAACAAATCTCTAACTACTAAAGGCCTTCATGACAGTGAAGTCAGAACATTGTGCATCTGTGACGCGCAGCAGAATGATCTTGATAAA............................................................................................................................................................................................................................................................................................................................................GTTCGTATATGGCTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726611" ref_strand="+" ref_description="SGN-E726611 [LA12BC10]">
      <seq>atcgactgaagacgctgagcatggagaattccgacgaagaaccgccgctcgccgtcgaaatcaacgacgccgtcaactctaatcaactgacaaagagctcaaagcttccgccggttggcgtcaccgtcatcaccggctatctcggttccggaaaatccactttgatcaattacatattgaaaactcaacatgggaagaaaatagcagtgatacttaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgagaagcatagtttggttcaagcattggagcaacttgttcagagaaaagagaggcttgatcatatattgctagagactactggtttggcaaatcctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccataatcactgttgttgatgcaaagaaccttcggtatcagctaaaaccaaatcctgactcctcttcatttcctgaagcttatttacaaatagcttttgcggatgttatcattcttaacaaggtagatctaatttctctagatgactcgggagcggtgctagaggaactggtgaaggaaatacgtgatgttaattcccttgctaatattattcattctgtgcggtgccaagttgacttatcgaagatattaaactgtcaggcatatgatcctactcatgctgctcatcttgaagcattgttaaaggagaancaatctcntactactaaaggccttcatgacagtgaagtcagaacattgtgcatctgtgacgcgcagcagattgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86813" stop="84091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86513" g_stop="86353" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="379" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="494" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="84959" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="584" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84769" g_stop="84596" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="758" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84595" i_stop="84506" i_length="90">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84505" g_stop="84391" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="873" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E726611" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86513" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="84959"/>
          <exon e_start="84769" e_stop="84596"/>
          <exon e_start="84505" e_stop="84391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCGGTAATTGATATGTTAGTTTCTCCATTCAATCATCTCAGGTTTCTAATTAGGCTTTCAATCTGTTTTTTCAACTTTCCAGTGGTTGTATTCCCATTCTTATAGGTGCTAACTAGGACTGTACTTCATATAATAGGTCTGGATTATGGATGAAATCATGTCTAACTCTTATTTGTGAACTGTTGTGTGTAGGATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGACTCGGGAGCGGTGCTAGAGGAACTGGTGAAGGAAATACGTGATGTTAATTCCCTTGCTAATATTATTCATTCTGTGCGGTGCCAAGTTGACTTATCGAAGATATTAAACTGTCAGGCATATGATCCTACTGTAAGCAATGATCCTTATACATGAAATTCAGCTATTGCTACATAGCAGACGGAAAGCTAAATAATCTTCCATTTTCCTGATTTTTTAAAGCATGCTGCTCATCTTGAAGCATTGTTAAAGGAGAACAAATCTCTAACTACTAAAGGCCTTCATGACAGTGAAGTCAGAACATTGTGCATCTGTGACGCGCAGCAGATTGATCTTG</genome_strand>
        <mrna_strand>ATCGACTGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT.............................................................................................TTGATCAATTACATATTGAAAACTCAACATGGGAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGAGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAATCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG.............................................................................................................................................................................................GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGACTCGGGAGCGGTGCTAGAGGAACTGGTGAAGGAAATACGTGATGTTAATTCCCTTGCTAATATTATTCATTCTGTGCGGTGCCAAGTTGACTTATCGAAGATATTAAACTGTCAGGCATATGATCCTACT..........................................................................................CATGCTGCTCATCTTGAAGCATTGTTAAAGGAGAANCAATCTCNTACTACTAAAGGCCTTCATGACAGTGAAGTCAGAACATTGTGCATCTGTGACGCGCAGCAGATTGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324329" ref_strand="+" ref_description="SGN-E324329 [cTOC-6-E3]">
      <seq>tgaagacgctgagcatggagaattccgacgaagaaccgccgctcgccgtcgaaatcaacgacgccgtcaactctaatcaactgacaaagagctcaaagcttccgccggttggcgtcaccgtcatcaccggctatctcggttccggaaaatccactttgatcaattacatattgaaaactcaacatggcaagaaaatagcagtgatacttaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgtgaagcatagtttggttcaagcattggagcaacttgttcagagaaaagagaggcttgatcatatattgctagagactactggtttggcaaaccctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccataatcactgttgttgatgcaaagaaccttcggtatcagctaaaaccaaatcctgactcctcttcatttcctgaagcttatttacaaatagcttttgcggatgttatcattcttaacaaggtagatctaatttctctagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86807" stop="84425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86507" g_stop="86353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="373" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="488" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="84959" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="578" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84769" g_stop="84725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="623" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E324329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86507" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="84959"/>
          <exon e_start="84769" e_stop="84725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCGGTAATTGATATGTTAGTTTCTCCATTCAATCATCTCAGGTTTCTAATTAGGCTTTCAATCTGTTTTTTCAACTTTCCAGTGGTTGTATTCCCATTCTTATAGGTGCTAACTAGGACTGTACTTCATATAATAGGTCTGGATTATGGATGAAATCATGTCTAACTCTTATTTGTGAACTGTTGTGTGTAGGATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGAC</genome_strand>
        <mrna_strand>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT.............................................................................................TTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG.............................................................................................................................................................................................GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272694" ref_strand="+" ref_description="SGN-E272694 [cLEM-21-A14]">
      <seq>tgaagacgctgagcatggagaattccggcgaagaaccgccgctcgccgtcgaaatcaacgacgccgtcaactctaatcaactgacaaagagctcaaagcttccgccggttggcgtcaccgtcatcaccggctatctcggttccggaaaatccactttgatcaattacatattgaaaactcaacatggcaagaaaatagcagtgatacttaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgtgaagcatagtttggttcaagcattggagcaacttgttcagagaaaagagaggcttgatcatatattgctagagactactggtttggcaaaccctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccataatcactgttgttgatgcaaaaaaccttcggtatcagctaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86807" stop="84710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86507" g_stop="86353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="373" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="488" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="85010" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="527" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E272694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86507" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="85010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCA</genome_strand>
        <mrna_strand>TGAAGACGCTGAGCATGGAGAATTCCGGCGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT.............................................................................................TTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAAAACCTTCGGTATCAGCTAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547025" ref_strand="+" ref_description="SGN-E547025 [TUS-70-L3](-)">
      <seq>caaagtgaatcaaattttcgtcctaaattttagttgttttcctttttttttcctatttcaacaattgtatatgtattgtgtttcttatgttttttcatatttttttgatgaaataatcgattgtttgttcttattagatctcaaattagtcacagaatgaatgaatcatcttcatctatgaggattatcacagggtctatggtaaaatcaaaacaagttcaacatgaacaaacaatggaagaattgagatcaaagaaaaaaatatgaccctacggcagttcaagaagttattaacaatgctaaatctagaggcattaaaattgtacaaggaggaagaaagaggaaagcaacattgattcagaggaaaatgcatgtgaagttgacggatctgaagaacatcataattatgaggtagtggcttaaaacacaaatttagatacaatttttttgttacttagatgtcaatatacaaaaaattattgtttaagtaaattttgtattcacgtaattgtatatagtatattgcatgtttagtacacacaagttttagttatatatttgtatatgtgtctgaggatttgattactttatacatactttaagttatgtataatgaataatatactaagtcttaatagtggtagtagcagcattgtatattaaaggctcattattatttttgtttttgtatatatatacaaaaagtaattggacttagttatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86669" stop="88077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86980" g_stop="87150" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="193" r_length="172" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87151" i_stop="87231" i_length="81">
            <donor d_prob="0.477" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87232" g_stop="87778" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="736" r_length="543" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-E547025" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86980" e_stop="87150"/>
          <exon e_start="87232" e_stop="87778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTTTAGTCGTTTTCC-TTTTTTTTCCTTATTCAACAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCTATTGTTTGTTCTTATTAGATCTCAAATTAGTCACAGAATGAATGAATCATCTTCAACTATGAGGATTACCAGAGGTATTCCATTGCATGTCAATTTTGTTGACAATTTACCATCGTTTTCAATGGGTTTAACTCAAGATTTTGGGGTTGATGTAGGGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAG-AAAAAATATGACCCTACGGCAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGAAAAATAGTAAACATTGATTCAGAGGAAAATGTATGTGAAGTTGACGGATCTGAAGAACATCATAATCATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTTGTTACTTAGATGTCAATATACAAAAAAATATTATTTAAGTAAATTTTGTATTCACGTAATTGTATATAGTATATTGCATGTTTAGTACACACATGTTTTAGTTATATATTTGTATATGTGTCTGTAGATTTGATTACTTTATACATACTTTACGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTTGTAACAG-ATTGTATATTTAAAGGCTCATTATTATTTTTATTTTTGTATATATATACACAAAGTAATTGGACTTAGTTATACAGATGAAAAAAT</genome_strand>
        <mrna_strand>CCTAAATTTTAGTTGTTTTCCTTTTTTTTTCCTATTTCAACAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCGATTGTTTGTTCTTATTAGATCTCAAATTAGTCACAGAATGAATGAATCATCTTCATCTATGAGGATTATCACAG.................................................................................GGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAAATATGACCCTACGGCAGTTCAAGAAGTTATTAACAATGCTAAATCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAG--GAA-AG-CAACATTGATTCAGAGGAAAATGCATGTGAAGTTGACGGATCTGAAGAACATCATAATTATGAGGTAGTGGCTTAAAACACAAATTTAGATACAA-TTTTTTTGTTACTTAGATGTCAATATACAAAAAATTATTGTTTAAGTAAATTTTGTATTCACGTAATTGTATATAGTATATTGCATGTTTAGTACACACAAGTTTTAGTTATATATTTGTATATGTGTCTGAGGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAGCATTGTATA-TTAAAGGCTCATTATTATTTTTGTTTTTGTATATATATACAAAAAGTAATTGGACTTAGTTATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308322" ref_strand="+" ref_description="SGN-E308322 [cLEZ-6-K23](-)">
      <seq>tttcctgatgacttaaattcatcttcttttcccagtcgtaatcgtgacattgggcattataccacacatggtctacaaaacacttttgtcaataaaatgagcgacaaattttgttgatcacttttgttttttgtacatggtgttcatgtcaaggagaatacattacttgcttctgcctttggctgtcgattcagtcagcataaagttgcatctctttcttctgcaatatatttcgaaaattgcatcaactattttccctgtattagcattctttgggtaaaatataccatttgtggtactggcttgttatttatacacatacttaacatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="99177" stop="47786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98877" g_stop="98539" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E308322" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98877" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAATCGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGCGACAAATTTTGTTGATCACTTTTGTTTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAGCATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACTATTTTCCCTGTATTAGCATTCTTTGGGTAAAATATACCATTTGTGGTACTGGCTTGTTATTTATACACATACTTAACATCTCTCTCTCT</genome_strand>
        <mrna_strand>TTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAATCGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGCGACAAATTTTGTTGATCACTTTTGTTTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAGCATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACTATTTTCCCTGTATTAGCATTCTTTGGGTAAAATATACCATTTGTGGTACTGGCTTGTTATTTATACACATACTTAACATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690320" ref_strand="+" ref_description="SGN-E690320 [LH_Ea03D06]">
      <seq>ccgtggaaagcacatgggttcagagcttgttcagagggtggcctttaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgttgcaatatcagctaggggaccaattcaagatttgcctgattacaactggttcagacgcaggacatactggctgcggtactagattgctaattctttcctgatgacttaaattcatcttcttttcccagtcgtaagcgtgagtgacattgggcattataccacacatggtctacaaaacacttttgtcaataaaatgagtgacaaattttgttgatcacttttgtttttgtacatggtgttcatgtcaaggagaatacattacttgcttctgcctttggctgtcgattcagtcaacataaagttgcatctctttcttctgcaatatatttcgaaaattgcatcaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="100898" stop="98327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100848" g_stop="100831" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="127" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="226" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="292" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98975" g_stop="98628" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="751" r_length="351" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="763"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E690320" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100848" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAA---T-CGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGCGACAAATTTTGTTGATCACTTTTGTTTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAGCATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACT</genome_strand>
        <mrna_strand>CCGTGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCTTTAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAACTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAAGCGTGAGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGTGACAAATTTTGTTGATCACTTTTG-TTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAACATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694160" ref_strand="+" ref_description="SGN-E694160 [LH_Ea03D06](-)">
      <seq>ggaaagcacatgggttcagagcttgttcagagggtggccattaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgttgcaatatcagctaggggaccaattcaagatttgcctgattacaactggttcagacgcaggacatactggctgcggtactagattgctaattctttcctgatgacttaaattcatcttcttttcccagtcgtaagcgtgagtgacattgggcattataccacacatggtctacaaaacacttttgtcaataaaatgagtgacaaattttgttgatcacttttgtttttgtacatggtgttcatgtcaaggagaatacattacttgcttctgcctttggctgtcgattcagtcaacataaagttgcatctctttattgtgcaatatatttcgaaaattgcatcaactaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="100898" stop="98327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100844" g_stop="100831" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="123" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="222" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="288" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="396" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98975" g_stop="98628" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="747" r_length="351" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="765"/>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E694160" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100844" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAA---T-CGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGCGACAAATTTTGTTGATCACTTTTGTTTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAGCATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACT</genome_strand>
        <mrna_strand>GGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATTAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAACTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAAGCGTGAGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGTGACAAATTTTGTTGATCACTTTTG-TTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAACATAAAGTTGCATCTCTTTATTGTGCAATATATTTCGAAAATTGCATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284501" ref_strand="+" ref_description="SGN-E284501 [cLES-3-C15]">
      <seq>tgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgttgcaatatcagctaggggaccaattcaagatttgcctgattacaattggttcagacgcaggacatactggctgcggtactagattgctaattctttcctgatgacttaaattcatcttcttttcccagtcgtaatcgtgacattgggcattataccacacatggtctacaaaacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="100447" stop="98492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="109" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="175" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="283" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98975" g_stop="98792" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="467" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E284501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAATCGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTT</genome_strand>
        <mrna_strand>CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAATCGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308321" ref_strand="+" ref_description="SGN-E308321 [cLEZ-6-K23]">
      <seq>agtggagcgtcatggacagaccctgattccatagttttgatggtcatgcaacaaatgctcggatcatggagcaaaagttcaggaggaggaaagcacatgggttcagagcttgttcagagggtggccatcaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgttgcaatatcagctaggggaccaattcaagatttgcctgattacaattggttcagacgcaggacatactggctgcggtactagattgctaattctttcctgatgacttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101231" stop="98561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100931" g_stop="100831" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="210" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="309" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="375" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="483" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98975" g_stop="98861" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="598" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E308321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100931" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAA</genome_strand>
        <mrna_strand>AGTGGAGCGTCATGGACAGACCCTGATTCCATAGTTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311375" ref_strand="+" ref_description="SGN-E311375 [cLEZ-18-D24]">
      <seq>tgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgctcggatcatggagcaaaagttcaggaggaggaaagcacatgggttcagagcttgttcagagggtggccatcaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101265" stop="98848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100965" g_stop="100831" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="244" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="343" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="409" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="517" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98975" g_stop="98970" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="523" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E311375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100965" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTT</genome_strand>
        <mrna_strand>TGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202480" ref_strand="+" ref_description="SGN-E202480 [cLEC-6-K24]">
      <seq>tcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcagaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgctcggatcatggagcaaaagttcaggaggaggaaagcacatgggttcagagcttgttcagagggtggccatcaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101516" stop="98893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="148" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100982" g_stop="100831" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="300" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="409" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="508" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="574" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99261" g_stop="99193" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="643" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E202480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGA</genome_strand>
        <mrna_strand>GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333974" ref_strand="+" ref_description="SGN-E333974 [cTOD-24-A21]">
      <seq>gttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcagaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgctcggatcatggagcaaaagttcaggaggaggaaagcacatgggttcagagcttgttcagagggtggccatcaatgagctagctgaaagtgtgatggctttttacccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104132" stop="100230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103832" g_stop="103575" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100831" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="713" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100597" g_stop="100530" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="780" r_length="67" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E333974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103832" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100831"/>
          <exon e_start="100597" e_stop="100530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACT</genome_strand>
        <mrna_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTTAC-CCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333307" ref_strand="+" ref_description="SGN-E333307 [cTOD-20-B15]">
      <seq>gttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcagaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctncatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgctcggatcatggagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104132" stop="100557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103832" g_stop="103575" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100857" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="687" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E333307" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103832" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAA</genome_strand>
        <mrna_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTNCATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334211" ref_strand="+" ref_description="SGN-E334211 [cTOD-21-B20]">
      <seq>gttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattacggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtaatgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatacaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcacaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctgtgatggtcatgcaacaaatgctcggatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104132" stop="100563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103832" g_stop="103575" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100863" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="681" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E334211" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103832" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGG</genome_strand>
        <mrna_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTACGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAATGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATACAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCACAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTGTGATGGTCATGCAACAAATGCTCGGATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334035" ref_strand="+" ref_description="SGN-E334035 [cTOD-24-I12]">
      <seq>gttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcagaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgctcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104132" stop="100568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103832" g_stop="103575" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100868" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="676" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E334035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103832" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGAT</genome_strand>
        <mrna_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325280" ref_strand="+" ref_description="SGN-E325280 [cTOC-1-D5]">
      <seq>tttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagtggttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcggagttggtgtcataagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgctgttgcatttagtggagcgtcatggacagaccctgattccatagctttgatggtcatgcaacaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104040" stop="100573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103740" g_stop="103575" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="331" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="469" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100873" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="579" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E325280" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103740" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCT</genome_strand>
        <mrna_strand>TTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTGGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCGGAGTTGGTGTCATAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333498" ref_strand="+" ref_description="SGN-E333498 [cTOD-20-B4]">
      <seq>gttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccacttcccaattggtgtcagaagagccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctcaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104132" stop="100642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103832" g_stop="103575" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101075" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100982" g_stop="100942" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="602" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E333498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103832" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101075"/>
          <exon e_start="100982" e_stop="100942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAGGTGTGGATAAACTACTTAGTTATTTACTCTTCTAGTTTATGTATTTTATATGAACCTTTTTACTGATTTTTGTTCTTCTTCCACATAAATAGATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGC</genome_strand>
        <mrna_strand>GTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG............................................................................................ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213443" ref_strand="+" ref_description="SGN-E213443 [cLEC-71-H5]">
      <seq>gatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagagctcatatacaagattacatttcaacccactatggtgctcatagaatggtaatttctgctgccggagctgtgaagcatgaagaagttgttgagctagtgaagaaacattttacaaaactatcatctaatcctattaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104109" stop="100820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103809" g_stop="103575" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101615" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="400" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101212" g_stop="101120" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="493" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E213443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103809" e_stop="103575"/>
          <exon e_start="101779" e_stop="101615"/>
          <exon e_start="101212" e_stop="101120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATGGTACGGAACCTGTCATAGCTGATGCATTATCTGTTGGCGACTTCCTTGCTTACTAGCTTCTTCTGTTAAAAAAGATACTACTGGGATTCACCCTTTATTTCGAATTGAATTTTATTGATTTCATTGTAGTCATGTCAAAAGATTTCCACTTTTTTACCTTCTCTAAAGGAGCAAACATTAAAGTGATCCCACTTCTACGCTTCCTTGATCCAAATGAATGACAATCTGTCCTTTCCAGTGTGGTATCATATGACCTTCCATTCCAAGCCTAGTCATGTATATCTCAAACGCATAAAAAAAAATCCCGTGAGCACAAAAAAAGGGAAACTAGTGTTTTGTTATTTTTTTGTTTTTGATCAAACTTCTACCACACTAAAAGCGTCATTTAAGTCTTTGCTGTAGGTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACT</genome_strand>
        <mrna_strand>GATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739526" ref_strand="+" ref_description="SGN-E739526 [LC17DC03]">
      <seq>cctttaccttcttaacctcacgcgccgccgctctcgaatcactcccttcaccgttctcccaccatgcattaccttctcttctcgatcctccacctccataaccaacccctcccaatccccctccttaccctccccacctcccccagacgccatgatctacgatcgcttagctgaacaagtcaaatcgaagatcaaacgcctcgaagacccgaacccgagattcctcaagtacaattcccccgatcctactgtagcagatcacacctcaatcctatcagcaccggagacgaaagtcactactcttcctaatggtcttcgtgttgctacggaatcgaatttgtcttcacagacagctactgttggagtttggatcgatgctggatcgcgattcgaaactgaggagaataatggcgttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaacaacccgaggaagtcatctttgaccagttacatactactgcattccaatacactccattgggtagaactattcttggacctgctcagaacattgagaaaatgacaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104539" stop="101362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104244" g_stop="103575" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101779" g_stop="101662" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="788" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E739526" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104244" e_stop="103575"/>
          <exon e_start="101779" e_stop="101662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCACCTTCTTAACCTCACGCGCCGCCGCTCTCGAATCACTCCCTTCACCGTTCTCCCACCATGCATTACCTTCTCTTCTCGATCCTCCACCTCCATAACCAACCCCTCCCAATCCCCCTCCTTACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAGGTATGAGGCAAGAAACAAACGATTTTTATTGATTCGTAATGTATAGTAGAAGTATCTAATTTTGGTTTCAATTTGGACATTACTTGATTAGAAACTAGTACTACAAATCACAATCTTTTAGAATTAAGGTATTTAGGAAGTGTGTGAGAAAAATGTAGTTAAACGGAAAAACAGGTTGAATCCCTAGTATTAACAATGTATGTAAAATGAGTACCAATTATTCTTAAGATATACCAAAAAAAAAAATTCTTGTCTTTAAGAAAGTATGATTGAAATGCAACTGTCCTTGAGAGTTTTGGGTGATTCAGATGGAAGAAGGAAGTTGCTACTTATAATAGGAGCTGTATCAATTGCTAATCCATTTGAAGTTAATGATCTAGAGTATTCTTTGTTTAGTTAAGAACCTTCTTATTTAAGTAGGATACGTAACCAGAAGTTTATGTCCTGTTCCACTACTGTGGTTCAGAATATAGCGATTCTACTTTACGCTCGTAGGTGCAGCTGATAGAGGGATCAAATGGTATATAGTTCATTTTTGGTAGCTTGAAGAAAGGAAAGCTCCTACTCTAGTCATTGAGTGACATATAAAATAAGGAGACATCTTTATGCATGCAAAATATCTATTCCAAACATATATGCTATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATTGCTTCAGCGGCTGCAATGGCTATAACAAAAATTGAGAAAATGTCTCCTTTTAATTGACGATGCTCTCTTTTTAGCTTTCAAAGCCAGTAGTTTAAAGATGACATTTACAATGATTTTGTCAAAGTGAATGTTTCCAATCTCAGAGAAAGCTGTCACTTTTATCTAAAGAATCCTTGCAAAGTATTTTGAGACCATTTACAGTAAGATGAAAATGTGCTATGATGATTACAACAAATTTTATGCTGTAAAGCTAGATTAAGCAGCAGGTTGAAAGTTTCTAATTTTTTTGACAATATATATCTACTAATAGTTCCTTTATTCGATTCTTGACTGGTTGGAGTGATGGAATTTCATCTTTAACTTTAGCCTGTGCAGAAATAGGCTATATATTTGATGTTTTTCATAATACCTCCGTTCATTTCTCTGCTGTCTGTAATTGATTGCCTAGTATGTTTACTTATGTTGAGATATCTGATTTTGCACACTGGAGAGACTATGTGAGACTGAAAGGCTGTCGTGAACAACCATCTAGTAGAGGAAGTTGAATCAAAAGAATAAATAAATGGATAGAAAATTGACTCTAATAAATTCTTAGCTAATGAAATGGTTAAATTGATTAAAAAGAAAGGGAATTTTTGGCAGTGTAGATGTCCTCATCTATTTAGTGCCAGTAACTTGGTCAATGTTTTTTCTTTCTTGGATTGATATTATTGCTATCTTCATTCCTGTACCCAGTGTTATAGTGGTCCTGGCTGTCCGCTCAGAGGCTATCTTGCTTGCAAATCATTCTGATTCTATATGAAGACAATGGTCAGTAACTGCAATGATTTCAAATGGTATGCCTAGTTTGTCTCTAGTCAGACTAAACAATAACCTCTTTAGCTTCTCCAATAATGGGTAACCCTAGTTGGCCATGTAACCTTTCATTGATGTCCTTGTAGATCTGTTTAACGGGTGTATTTTTTCATGGGGAGTCAGGTAGGTTTTCTTTATGTTACACTGTTAATTCTTCTGTTGGAGACTTATATTTTAGTCGAGGAGTTTGTATCTGTACTTGGTAAATTTTTCATTGAATCTCAATATTTGTGATTCTTCATGTTGGACAATCTTCTTGTAGGTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAG</genome_strand>
        <mrna_strand>CCTTTACCTTCTTAACCTCACGCGCCGCCGCTCTCGAATCACTCCCTTCACCGTTCTCCCACCATGCATTACCTTCTCTTCTCGATCCTCCACCTCCATAACCAACCCCTCCCAATCCCCCTCCTTACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312061" ref_strand="+" ref_description="SGN-E312061 [cTOA-11-M7]">
      <seq>cagacgccatgatctacgatcgcttagctgaacaagtcaaatcgaagatcaaacgcctcgaagacccgaacccgagattcctcaagtacaattcccccgatcctactgtagcagatcacacctcaatcctatcagcaccggagacgaaagtcactactcttcctaatggtcttcgtgttgctacggaatcgaatttgtcttcacagacagctactgttggagtttggatcgatgctggatcgcgattcgaaactgaggagaataatggcgttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatggaagaggtggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104401" stop="103273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104101" g_stop="103575" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E312061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104101" e_stop="103575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG</genome_strand>
        <mrna_strand>CAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329774" ref_strand="+" ref_description="SGN-E329774 [cTOD-3-C22]">
      <seq>accctgcccacctcccccaggcgccatgatctacgatcgcttagctgaacaagtcaaatcgaagatcaaacgcctcgaagacccgaacccgagattcctcaagtacaattcccccgatcctactgtagcagatcacacctcaatcctatcagcaccggagacgaaagtcactactcttcctaatggtcttcgtgttgctacggaatcgaatttgtcttcacagacagctactgttggagtttggatcgatgctggatcgcgattcgaaactgaggagaataatggcgttgctcatttccttgagcatatgatttttaaaggaactgagaagaggccaattagggcattggaagaggaaattgagaatatgggagggcatttgaatgcttatacttctagggagcaaactacttatttcgccaaagttttgggatctgatgtgcctaaggcagttgatattcttggggatattttgcagaattctctattggaggaagataagattattcgagagcgtagtgtgattcttcgcgaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104418" stop="103279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104118" g_stop="103579" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E329774" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104118" e_stop="103579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGA</genome_strand>
        <mrna_strand>ACCCTGCCCACCTCCCCCAGGCGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290941" ref_strand="+" ref_description="SGN-E290941 [cLET-8-C6]">
      <seq>cacgcgccaccttcttaacctcacgcgccgccgctctcgaatcactcccttcaccgttctcccaccatgcattaccttctcttctcgatcctccacctccataaccaacccctcccaatccccctccttaccctccccacctcccccagacgccatgatctacgatcgcttagctgaacaagtcaaatcgaagatcaaacgcctcgaagacccgaacccgagattcctcaagtacaattcccccgatcctactgtagcagatcacacctcaatcctatcagcaccggagacgaaagtcactactcttcctaatggtcttcgtgttgctacggaatcgaatttgtcttcacagacagctactgttggagtttggatcgatgctggatcgcgattcgaaactgaggagaataatggcgttgctcatttccttgagcatatgattaagaaaggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104547" stop="103506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104247" g_stop="103793" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-E290941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104247" e_stop="103793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCGCCACCTTCTTAACCTCACGCGCCGCCGCTCTCGAATCACTCCCTTCACCGTTCTCCCACCATGCATTACCTTCTCTTCTCGATCCTCCACCTCCATAACCAACCCCTCCCAATCCCCCTCCTTACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTG</genome_strand>
        <mrna_strand>CACGCGCCACCTTCTTAACCTCACGCGCCGCCGCTCTCGAATCACTCCCTTCACCGTTCTCCCACCATGCATTACCTTCTCTTCTCGATCCTCCACCTCCATAACCAACCCCTCCCAATCCCCCTCCTTACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTAAGAAAGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>59</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17671" PGL_stop="21884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17671" e_stop="17917"/>
            <exon e_start="19040" e_stop="19134"/>
            <exon e_start="19214" e_stop="19311"/>
            <exon e_start="19426" e_stop="19475"/>
            <exon e_start="19928" e_stop="20023"/>
            <exon e_start="20131" e_stop="20220"/>
            <exon e_start="20404" e_stop="20496"/>
            <exon e_start="20623" e_stop="20718"/>
            <exon e_start="21225" e_stop="21290"/>
            <exon e_start="21407" e_stop="21884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.644" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17671" e_stop="17917" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.950">
            <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19040" e_stop="19134" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.829">
            <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19214" e_stop="19311" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.830">
            <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19426" e_stop="19475" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19928" e_stop="20023" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="20024" i_stop="20130" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20131" e_stop="20220" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20221" i_stop="20403" i_length="183"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20404" e_stop="20496" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.644" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20497" i_stop="20622" i_length="126"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20623" e_stop="20718" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20719" i_stop="21224" i_length="506"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21225" e_stop="21290" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21291" i_stop="21406" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21407" e_stop="21884" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17671" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="20023"/>
              <exon start="20131" stop="20220"/>
              <exon start="20404" stop="20470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17677" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="19984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="20023"/>
              <exon start="20131" stop="20220"/>
              <exon start="20404" stop="20496"/>
              <exon start="20623" stop="20630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20173" stop="20220"/>
              <exon start="20404" stop="20496"/>
              <exon start="20623" stop="20718"/>
              <exon start="21225" stop="21290"/>
              <exon start="21407" stop="21884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG : CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG : GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCT : GTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG : GTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAAT : ATTGGCCGCTTACATTGTTCATTACCTTGGTGGGAGGATGCATTGGTGAATTTCATGATCAGTGGAGGTTACAATGTCATTTCTCAGATAGAACAT : GTCAAGCAGAAAACACTGATAATTTGGGGTGAAGATGATCAGATTATTGACAACAAGCTTGCAGTG : AGATTGCATTGTGAACTTCCAAATGCAATTCTACGCCAAATACCAAAATGTGGCCATATCCCTCATGTGGAGAAGCCTGATGCTGTCTCCAGGTTGATAGCGGACTTTGTTCGCCCTGACCAATCACAGAGGGCAAACCCTGACTCAGTCTCCACCATCTCAGTTCCGTCTTGATTACTGGTACTTGTGCAAGCAGATAGTTAGCATATCTCACACGTGAAGATCCAACTTCCTGGTCCTACCTCGTAATGAGGTTAGTTTGCCAGTTATAATGGTGAATATGCTCTCATTCTTTGAGCACCATCAACCTCACTGCATGCATATCGATTGTCAAAGGTGCTTTGGTGCTTTTAACACCAGTAGAGAAGTGTAATTAAACTGAATACTTGAGCAGAGTATTAGCTGAATGCTTTAGTAATTAGGATTCTGGTATATTTTTCTTCCAGCACATGCTAATCTTATTTTATATCAATTACCA</gDNA_template>
            <first_frame> K  N  R  W  P  P  C  T  A  E  R  L  R  N  K  E  Y  A  D  I  F  L  S  R  N  R  W  C  S  S  A  S  I  S  T  N  W  N  Q  F  E  M  L  L  F  E  A  F  N  D  Q  G  R  *  I  S  G  F  S  S  Y  T  N  R  E  Y  Q  R  P  L  C  *  K  A  G  F  T  N  *  E  N  T   : S  K  L  I  E  G  M  H  H  E  *  L  C  E  A  K  R  T  D  R  G  Q  S  S  C  A  S  P  W  F  *  *  :  L  M  F  R  V  E  V  H  S  S  N  A  *  G  C  W  I  G  D  M  G  S  *  Y  P  W  M  G  F  L  *  F  R :   K  A  S  I  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  P  H  Q  E  A  N  G  T  C  W  T  *  S  W  I  C  C  C  Y  *  L  F  C  *  I  S  R  S   : C  *  *  A  G  F  N  *  C  K  C  L  R  G  R  Y  R  K  P  C  N  L  T  Q  S  S  S  L  C  W   : G  L  L  V  E  K  S  P  T  S  L  I  C  N  F  I  S  F  Q  W  L  T  I  *  Y  L  H  R  L  D  *   : Y  W  P  L  T  L  F  I  T  L  V  G  G  C  I  G  E  F  H  D  Q  W  R  L  Q  C  H  F  S  D  R  T   : C  Q  A  E  N  T  D  N  L  G  *  R  *  S  D  Y  *  Q  Q  A  C  S   : E  I  A  L  *  T  S  K  C  N  S  T  P  N  T  K  M  W  P  Y  P  S  C  G  E  A  *  C  C  L  Q  V  D  S  G  L  C  S  P  *  P  I  T  E  G  K  P  *  L  S  L  H  H  L  S  S  V  L  I  T  G  T  C  A  S  R  *  L  A  Y  L  T  R  E  D  P  T  S  W  S  Y  L  V  M  R  L  V  C  Q  L  *  W  *  I  C  S  H  S  L  S  T  I  N  L  T  A  C  I  S  I  V  K  G  A  L  V  L  L  T  P  V  E  K  C  N  *  T  E  Y  L  S  R  V  L  A  E  C  F  S  N  *  D  S  G  I  F  F  F  Q  H  M  L  I  L  F  Y  I  N  Y   </first_frame>
            <second_frame>  K  T  G  G  H  R  A  R  L  S  D  *  E  T  K  N  M  L  T  F  F  S  A  G  T  G  G  A  P  P  P  A  F  L  L  T  G  T  N  L  K  C  S  Y  S  R  R  L  T  I  R  A  G  E  F  P  D  F  L  P  I  Q  I  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  L  S  K  G  C  I  M  S  S  C  V  K  P  K  E  Q  T  E  A  N  P  V  V  L  L  H  G  F  D  S :   S  C  L  E  W  R  Y  T  L  P  M  L  E  D  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  H  I  K  K  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  K  Y  P  E  A  :  V  D  R  L  V  L  I  D  A  S  V  Y  A  E  G  T  G  N  L  A  T  L  P  K  A  V  A  Y  A  G  :  V  Y  L  L  K  S  L  P  L  R  L  Y  A  T  S  L  A  F  N  G  L  P  F  S  T  C  I  D  W  T  N  :  I  G  R  L  H  C  S  L  P  W  W  E  D  A  L  V  N  F  M  I  S  G  G  Y  N  V  I  S  Q  I  E  H  :  V  K  Q  K  T  L  I  I  W  G  E  D  D  Q  I  I  D  N  K  L  A  V  :  R  L  H  C  E  L  P  N  A  I  L  R  Q  I  P  K  C  G  H  I  P  H  V  E  K  P  D  A  V  S  R  L  I  A  D  F  V  R  P  D  Q  S  Q  R  A  N  P  D  S  V  S  T  I  S  V  P  S  *  L  L  V  L  V  Q  A  D  S  *  H  I  S  H  V  K  I  Q  L  P  G  P  T  S  *  *  G  *  F  A  S  Y  N  G  E  Y  A  L  I  L  *  A  P  S  T  S  L  H  A  Y  R  L  S  K  V  L  W  C  F  *  H  Q  *  R  S  V  I  K  L  N  T  *  A  E  Y  *  L  N  A  L  V  I  R  I  L  V  Y  F  S  S  S  T  C  *  S  Y  F  I  S  I  T  </second_frame>
            <third_frame>   K  P  V  A  T  V  H  G  *  A  T  E  K  Q  R  I  C  *  H  F  S  Q  P  E  P  V  V  L  L  R  Q  H  F  Y  *  L  E  P  I  *  N  A  L  I  R  G  V  *  R  S  G  Q  V  N  F  R  I  F  F  L  Y  K  S  R  I  S  K  T  L  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  Y  R  R  D  A  S  *  V  V  V  *  S  Q  K  N  R  Q  R  P  I  Q  L  C  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  L  F  Q  C  L  R  M  L  D  W  R  H  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  H  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  S  R  S  Q  W  Y  L  L  D  L  V  L  D  L  L  L  L  L  T  F  L  L  N  I  Q  K  L :   L  I  G  W  F  *  L  M  Q  V  F  T  R  K  V  Q  E  T  L  Q  P  Y  P  K  Q  *  L  M  L  G :   F  T  C  *  K  V  S  H  F  A  Y  M  Q  L  H  *  L  S  M  A  Y  H  L  V  P  A  *  T  G  L  I :   L  A  A  Y  I  V  H  Y  L  G  G  R  M  H  W  *  I  S  *  S  V  E  V  T  M  S  F  L  R  *  N  M :   S  S  R  K  H  *  *  F  G  V  K  M  I  R  L  L  T  T  S  L  Q  * :   D  C  I  V  N  F  Q  M  Q  F  Y  A  K  Y  Q  N  V  A  I  S  L  M  W  R  S  L  M  L  S  P  G  *  *  R  T  L  F  A  L  T  N  H  R  G  Q  T  L  T  Q  S  P  P  S  Q  F  R  L  D  Y  W  Y  L  C  K  Q  I  V  S  I  S  H  T  *  R  S  N  F  L  V  L  P  R  N  E  V  S  L  P  V  I  M  V  N  M  L  S  F  F  E  H  H  Q  P  H  C  M  H  I  D  C  Q  R  C  F  G  A  F  N  T  S  R  E  V  *  L  N  *  I  L  E  Q  S  I  S  *  M  L  *  *  L  G  F  W  Y  I  F  L  P  A  H  A  N  L  I  L  Y  Q  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17708" stop="17917"/>
                    <exon start="19040" stop="19134"/>
                    <exon start="19214" stop="19311"/>
                    <exon start="19426" stop="19475"/>
                    <exon start="19928" stop="20023"/>
                    <exon start="20131" stop="20220"/>
                    <exon start="20404" stop="20496"/>
                    <exon start="20623" stop="20718"/>
                    <exon start="21225" stop="21290"/>
                    <exon start="21407" stop="21580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNMLTFFSAGTGGAPPPAFLLTGTNLKCSYSRRLTIRAGEFPDFLPIQIENIKDPYARKLASRIERIPVNLSKGCIMSSCVKPKEQTEANPVVLLHGFDSSCLEWRYTLPMLEDAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTHIKKPMVLVGPSLGSAVAIDFSVKYPEAVDRLVLIDASVYAEGTGNLATLPKAVAYAGVYLLKSLPLRLYATSLAFNGLPFSTCIDWTNIGRLHCSLPWWEDALVNFMISGGYNVISQIEHVKQKTLIIWGEDDQIIDNKLAVRLHCELPNAILRQIPKCGHIPHVEKPDAVSRLIADFVRPDQSQRANPDSVSTISVPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17677" e_stop="17917"/>
            <exon e_start="19040" e_stop="19134"/>
            <exon e_start="19214" e_stop="19311"/>
            <exon e_start="19426" e_stop="19475"/>
            <exon e_start="19928" e_stop="20220"/>
            <exon e_start="20404" e_stop="20496"/>
            <exon e_start="20623" e_stop="20718"/>
            <exon e_start="21225" e_stop="21290"/>
            <exon e_start="21407" e_stop="21884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.950" e_score="0.996"/>
          <exon-intron don_prob="0.936" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="0.940"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.644" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="17677" e_stop="17917" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.950">
            <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19040" e_stop="19134" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.829">
            <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19214" e_stop="19311" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.830">
            <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="19426" e_stop="19475" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="19928" e_stop="20220" e_length="293"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20221" i_stop="20403" i_length="183"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20404" e_stop="20496" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.644" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20497" i_stop="20622" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20623" e_stop="20718" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20719" i_stop="21224" i_length="506"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21225" e_stop="21290" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21291" i_stop="21406" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21407" e_stop="21884" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17677" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="19984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19928" stop="20217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20173" stop="20220"/>
              <exon start="20404" stop="20496"/>
              <exon start="20623" stop="20718"/>
              <exon start="21225" stop="21290"/>
              <exon start="21407" stop="21884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG : CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG : GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG : GTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTAGCTTTCAATGGCTTACCATTTAGTACCTGCATAGACTGGACTAAT : ATTGGCCGCTTACATTGTTCATTACCTTGGTGGGAGGATGCATTGGTGAATTTCATGATCAGTGGAGGTTACAATGTCATTTCTCAGATAGAACAT : GTCAAGCAGAAAACACTGATAATTTGGGGTGAAGATGATCAGATTATTGACAACAAGCTTGCAGTG : AGATTGCATTGTGAACTTCCAAATGCAATTCTACGCCAAATACCAAAATGTGGCCATATCCCTCATGTGGAGAAGCCTGATGCTGTCTCCAGGTTGATAGCGGACTTTGTTCGCCCTGACCAATCACAGAGGGCAAACCCTGACTCAGTCTCCACCATCTCAGTTCCGTCTTGATTACTGGTACTTGTGCAAGCAGATAGTTAGCATATCTCACACGTGAAGATCCAACTTCCTGGTCCTACCTCGTAATGAGGTTAGTTTGCCAGTTATAATGGTGAATATGCTCTCATTCTTTGAGCACCATCAACCTCACTGCATGCATATCGATTGTCAAAGGTGCTTTGGTGCTTTTAACACCAGTAGAGAAGTGTAATTAAACTGAATACTTGAGCAGAGTATTAGCTGAATGCTTTAGTAATTAGGATTCTGGTATATTTTTCTTCCAGCACATGCTAATCTTATTTTATATCAATTACCA</gDNA_template>
            <first_frame> R  W  P  P  C  T  A  E  R  L  R  N  K  E  Y  A  D  I  F  L  S  R  N  R  W  C  S  S  A  S  I  S  T  N  W  N  Q  F  E  M  L  L  F  E  A  F  N  D  Q  G  R  *  I  S  G  F  S  S  Y  T  N  R  E  Y  Q  R  P  L  C  *  K  A  G  F  T  N  *  E  N  T   : S  K  L  I  E  G  M  H  H  E  *  L  C  E  A  K  R  T  D  R  G  Q  S  S  C  A  S  P  W  F  *  *  :  L  M  F  R  V  E  V  H  S  S  N  A  *  G  C  W  I  G  D  M  G  S  *  Y  P  W  M  G  F  L  *  F  R :   K  A  S  I  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  P  H  Q  E  A  N  G  T  C  W  T  *  S  W  I  C  C  C  Y  *  L  F  C  *  I  S  R  S  C  K  F  I  R  *  L  R  I  P  V  Q  M  L  *  I  T  F  L  Y  E  E  G  I  I  L  C  L  L  Q  V  A  L  L  Y  Q  V  D  R  L  V  L  I  D  A  S  V  Y  A  E  G  T  G  N  L  A  T  L  P  K  A  V  A  Y  A  G  :  V  Y  L  L  K  S  L  P  L  R  L  Y  A  T  S  L  A  F  N  G  L  P  F  S  T  C  I  D  W  T  N  :  I  G  R  L  H  C  S  L  P  W  W  E  D  A  L  V  N  F  M  I  S  G  G  Y  N  V  I  S  Q  I  E  H  :  V  K  Q  K  T  L  I  I  W  G  E  D  D  Q  I  I  D  N  K  L  A  V  :  R  L  H  C  E  L  P  N  A  I  L  R  Q  I  P  K  C  G  H  I  P  H  V  E  K  P  D  A  V  S  R  L  I  A  D  F  V  R  P  D  Q  S  Q  R  A  N  P  D  S  V  S  T  I  S  V  P  S  *  L  L  V  L  V  Q  A  D  S  *  H  I  S  H  V  K  I  Q  L  P  G  P  T  S  *  *  G  *  F  A  S  Y  N  G  E  Y  A  L  I  L  *  A  P  S  T  S  L  H  A  Y  R  L  S  K  V  L  W  C  F  *  H  Q  *  R  S  V  I  K  L  N  T  *  A  E  Y  *  L  N  A  L  V  I  R  I  L  V  Y  F  S  S  S  T  C  *  S  Y  F  I  S  I  T  </first_frame>
            <second_frame>  G  G  H  R  A  R  L  S  D  *  E  T  K  N  M  L  T  F  F  S  A  G  T  G  G  A  P  P  P  A  F  L  L  T  G  T  N  L  K  C  S  Y  S  R  R  L  T  I  R  A  G  E  F  P  D  F  L  P  I  Q  I  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  L  S  K  G  C  I  M  S  S  C  V  K  P  K  E  Q  T  E  A  N  P  V  V  L  L  H  G  F  D  S :   S  C  L  E  W  R  Y  T  L  P  M  L  E  D  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  H  I  K  K  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  K  Y  P  E  A  V  S  S  F  G  N  L  G  S  L  F  R  C  C  K  L  L  S  C  M  K  K  V  L  F  Y  A  C  F  K  *  L  Y  F  I  R  L  I  G  W  F  *  L  M  Q  V  F  T  R  K  V  Q  E  T  L  Q  P  Y  P  K  Q  *  L  M  L  G :   F  T  C  *  K  V  S  H  F  A  Y  M  Q  L  H  *  L  S  M  A  Y  H  L  V  P  A  *  T  G  L  I :   L  A  A  Y  I  V  H  Y  L  G  G  R  M  H  W  *  I  S  *  S  V  E  V  T  M  S  F  L  R  *  N  M :   S  S  R  K  H  *  *  F  G  V  K  M  I  R  L  L  T  T  S  L  Q  * :   D  C  I  V  N  F  Q  M  Q  F  Y  A  K  Y  Q  N  V  A  I  S  L  M  W  R  S  L  M  L  S  P  G  *  *  R  T  L  F  A  L  T  N  H  R  G  Q  T  L  T  Q  S  P  P  S  Q  F  R  L  D  Y  W  Y  L  C  K  Q  I  V  S  I  S  H  T  *  R  S  N  F  L  V  L  P  R  N  E  V  S  L  P  V  I  M  V  N  M  L  S  F  F  E  H  H  Q  P  H  C  M  H  I  D  C  Q  R  C  F  G  A  F  N  T  S  R  E  V  *  L  N  *  I  L  E  Q  S  I  S  *  M  L  *  *  L  G  F  W  Y  I  F  L  P  A  H  A  N  L  I  L  Y  Q  L  P </second_frame>
            <third_frame>   V  A  T  V  H  G  *  A  T  E  K  Q  R  I  C  *  H  F  S  Q  P  E  P  V  V  L  L  R  Q  H  F  Y  *  L  E  P  I  *  N  A  L  I  R  G  V  *  R  S  G  Q  V  N  F  R  I  F  F  L  Y  K  S  R  I  S  K  T  L  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  Y  R  R  D  A  S  *  V  V  V  *  S  Q  K  N  R  Q  R  P  I  Q  L  C  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  L  F  Q  C  L  R  M  L  D  W  R  H  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  H  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  S  R  S  Q  W  Y  L  L  D  L  V  L  D  L  L  L  L  L  T  F  L  L  N  I  Q  K  L  *  V  H  S  V  T  *  D  P  C  S  D  V  V  N  Y  F  P  V  *  R  R  Y  Y  F  M  L  A  S  S  S  F  T  L  S  G  *  *  A  G  F  N  *  C  K  C  L  R  G  R  Y  R  K  P  C  N  L  T  Q  S  S  S  L  C  W   : G  L  L  V  E  K  S  P  T  S  L  I  C  N  F  I  S  F  Q  W  L  T  I  *  Y  L  H  R  L  D  *   : Y  W  P  L  T  L  F  I  T  L  V  G  G  C  I  G  E  F  H  D  Q  W  R  L  Q  C  H  F  S  D  R  T   : C  Q  A  E  N  T  D  N  L  G  *  R  *  S  D  Y  *  Q  Q  A  C  S   : E  I  A  L  *  T  S  K  C  N  S  T  P  N  T  K  M  W  P  Y  P  S  C  G  E  A  *  C  C  L  Q  V  D  S  G  L  C  S  P  *  P  I  T  E  G  K  P  *  L  S  L  H  H  L  S  S  V  L  I  T  G  T  C  A  S  R  *  L  A  Y  L  T  R  E  D  P  T  S  W  S  Y  L  V  M  R  L  V  C  Q  L  *  W  *  I  C  S  H  S  L  S  T  I  N  L  T  A  C  I  S  I  V  K  G  A  L  V  L  L  T  P  V  E  K  C  N  *  T  E  Y  L  S  R  V  L  A  E  C  F  S  N  *  D  S  G  I  F  F  F  Q  H  M  L  I  L  F  Y  I  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17708" stop="17917"/>
                    <exon start="19040" stop="19134"/>
                    <exon start="19214" stop="19311"/>
                    <exon start="19426" stop="19475"/>
                    <exon start="19928" stop="20116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNMLTFFSAGTGGAPPPAFLLTGTNLKCSYSRRLTIRAGEFPDFLPIQIENIKDPYARKLASRIERIPVNLSKGCIMSSCVKPKEQTEANPVVLLHGFDSSCLEWRYTLPMLEDAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTHIKKPMVLVGPSLGSAVAIDFSVKYPEAVSSFGNLGSLFRCCKLLSCMKKVLFYACFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20068" stop="20220"/>
                    <exon start="20404" stop="20496"/>
                    <exon start="20623" stop="20718"/>
                    <exon start="21225" stop="21290"/>
                    <exon start="21407" stop="21580"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITFLYEEGIILCLLQVALLYQVDRLVLIDASVYAEGTGNLATLPKAVAYAGVYLLKSLPLRLYATSLAFNGLPFSTCIDWTNIGRLHCSLPWWEDALVNFMISGGYNVISQIEHVKQKTLIIWGEDDQIIDNKLAVRLHCELPNAILRQIPKCGHIPHVEKPDAVSRLIADFVRPDQSQRANPDSVSTISVPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17671" e_stop="17917"/>
            <exon e_start="19040" e_stop="19134"/>
            <exon e_start="19214" e_stop="19311"/>
            <exon e_start="19426" e_stop="19475"/>
            <exon e_start="19928" e_stop="20023"/>
            <exon e_start="20131" e_stop="20220"/>
            <exon e_start="20403" e_stop="20451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17671" e_stop="17917" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.950">
            <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19040" e_stop="19134" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.829">
            <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19214" e_stop="19311" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.830">
            <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19426" e_stop="19475" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19928" e_stop="20023" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="20024" i_stop="20130" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="0.911">
            <gDNA_exon_boundary e_start="20131" e_stop="20220" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20221" i_stop="20402" i_length="182"/>
          </intron>
          <exon e_serial="7" e_score="0.959">
            <gDNA_exon_boundary e_start="20403" e_stop="20451" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17671" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="20023"/>
              <exon start="20131" stop="20220"/>
              <exon start="20403" stop="20451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17677" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="19984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG : CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG : GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCT : GTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCTGGG : GGTTTACTTGTTGAAAAGTCTCCCACTTCGCTTATATGCAACTTCATTA</gDNA_template>
            <first_frame> K  N  R  W  P  P  C  T  A  E  R  L  R  N  K  E  Y  A  D  I  F  L  S  R  N  R  W  C  S  S  A  S  I  S  T  N  W  N  Q  F  E  M  L  L  F  E  A  F  N  D  Q  G  R  *  I  S  G  F  S  S  Y  T  N  R  E  Y  Q  R  P  L  C  *  K  A  G  F  T  N  *  E  N  T   : S  K  L  I  E  G  M  H  H  E  *  L  C  E  A  K  R  T  D  R  G  Q  S  S  C  A  S  P  W  F  *  *  :  L  M  F  R  V  E  V  H  S  S  N  A  *  G  C  W  I  G  D  M  G  S  *  Y  P  W  M  G  F  L  *  F  R :   K  A  S  I  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  P  H  Q  E  A  N  G  T  C  W  T  *  S  W  I  C  C  C  Y  *  L  F  C  *  I  S  R  S   : C  *  *  A  G  F  N  *  C  K  C  L  R  G  R  Y  R  K  P  C  N  L  T  Q  S  S  S  L  C  W   : G  F  T  C  *  K  V  S  H  F  A  Y  M  Q  L  H   </first_frame>
            <second_frame>  K  T  G  G  H  R  A  R  L  S  D  *  E  T  K  N  M  L  T  F  F  S  A  G  T  G  G  A  P  P  P  A  F  L  L  T  G  T  N  L  K  C  S  Y  S  R  R  L  T  I  R  A  G  E  F  P  D  F  L  P  I  Q  I  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  L  S  K  G  C  I  M  S  S  C  V  K  P  K  E  Q  T  E  A  N  P  V  V  L  L  H  G  F  D  S :   S  C  L  E  W  R  Y  T  L  P  M  L  E  D  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  H  I  K  K  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  K  Y  P  E  A  :  V  D  R  L  V  L  I  D  A  S  V  Y  A  E  G  T  G  N  L  A  T  L  P  K  A  V  A  Y  A  G  :  G  L  L  V  E  K  S  P  T  S  L  I  C  N  F  I  </second_frame>
            <third_frame>   K  P  V  A  T  V  H  G  *  A  T  E  K  Q  R  I  C  *  H  F  S  Q  P  E  P  V  V  L  L  R  Q  H  F  Y  *  L  E  P  I  *  N  A  L  I  R  G  V  *  R  S  G  Q  V  N  F  R  I  F  F  L  Y  K  S  R  I  S  K  T  L  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  Y  R  R  D  A  S  *  V  V  V  *  S  Q  K  N  R  Q  R  P  I  Q  L  C  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  L  F  Q  C  L  R  M  L  D  W  R  H  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  H  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  S  R  S  Q  W  Y  L  L  D  L  V  L  D  L  L  L  L  L  T  F  L  L  N  I  Q  K  L :   L  I  G  W  F  *  L  M  Q  V  F  T  R  K  V  Q  E  T  L  Q  P  Y  P  K  Q  *  L  M  L  G :   V  Y  L  L  K  S  L  P  L  R  L  Y  A  T  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17708" stop="17917"/>
                    <exon start="19040" stop="19134"/>
                    <exon start="19214" stop="19311"/>
                    <exon start="19426" stop="19475"/>
                    <exon start="19928" stop="20023"/>
                    <exon start="20131" stop="20220"/>
                    <exon start="20403" stop="20450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNMLTFFSAGTGGAPPPAFLLTGTNLKCSYSRRLTIRAGEFPDFLPIQIENIKDPYARKLASRIERIPVNLSKGCIMSSCVKPKEQTEANPVVLLHGFDSSCLEWRYTLPMLEDAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTHIKKPMVLVGPSLGSAVAIDFSVKYPEAVDRLVLIDASVYAEGTGNLATLPKAVAYAGGLLVEKSPTSLICNFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25563" PGL_stop="22947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25563" e_stop="25335"/>
            <exon e_start="24814" e_stop="24569"/>
            <exon e_start="24475" e_stop="24442"/>
            <exon e_start="23290" e_stop="22947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.731" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.989" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.786" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="25563" e_stop="25335" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.731" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25334" i_stop="24815" i_length="520"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24814" e_stop="24569" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.919">
            <gDNA_intron_boundary i_start="24568" i_stop="24476" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24475" e_stop="24442" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.786">
            <gDNA_intron_boundary i_start="24441" i_stop="23291" i_length="1151"/>
          </intron>
          <exon e_serial="4" e_score="0.948">
            <gDNA_exon_boundary e_start="23290" e_stop="22947" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25563" stop="25335"/>
              <exon start="24814" stop="24590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25506" stop="25335"/>
              <exon start="24814" stop="24569"/>
              <exon start="24475" stop="24442"/>
              <exon start="23290" stop="22947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25499" stop="25335"/>
              <exon start="24814" stop="24569"/>
              <exon start="24475" stop="24455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25413" stop="25335"/>
              <exon start="24814" stop="24569"/>
              <exon start="24475" stop="24442"/>
              <exon start="23290" stop="23088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCACCTATTTTTCTTGTCTCGAGAGCTCCATATCCCTATGACACACTTTCTCTGTTCCCCTTAAACATCTCATCTTTCTGCTTTCTTCTTTACAGTAGAATTTCACTTACCTTCTTGATTTATACAGGGAATACTAATATCTTCATATCTACTTCTTAAAGCTTGGCACAATCATGGCTGCTTTTGTACTGTCTTTAATACTTCTCTTGGCTTTAACTGGTTACTCAA : GTGGTGCTAATTACTGTGTGTGTAAAGATGGTTTTGCGGACACACTTCTGCAGCACAATATAGATTATGCCTGTGGAAATGGAGCTGATTGTACTGGTATCCTTCAAAATGGTCCTTGCTACAACCCTAACACTATTAAAGATCACTGCTCCTATGCTGTAAATAGCTATTACCAGAGGAAGGCTTCAACTGGTGCTACTTGTGACTTCAGTGGAACTGCTTCTTTGACTTCAACTCCACCAGCCT : CCTCTAGCTCTGCATGTTATCAGACCACAGGAGG : CAGCACTGGAGGTACCACAACCCCAAATGCACCAGGAACCACAACAAATCCAGGGATTGGCACCGGCACTAGCACTGGCACGGGCATAGGCACAGGCACAGGCACAGGAACTAATACAGGTATTAACAACCCAACTTTTGGGATGGGACCAACAGGAAGTGGTGGCTTCAACCCAGATGGCAGTGGCACAGAGGCTCTTCATCAAAACAGAGTTTTTATCACCATGGCACTTTTGTTTACAAGCAGCTTCTTGATGGTATGCTTAAGAATTTAAAAAAGGAAGTCTGAATGTGAGGCAGTGAATGAAAGAAAAAAAGGTTATGAGATGATAATGGACTTTTGGG</gDNA_template>
            <first_frame> S  T  Y  F  S  C  L  E  S  S  I  S  L  *  H  T  F  S  V  P  L  K  H  L  I  F  L  L  S  S  L  Q  *  N  F  T  Y  L  L  D  L  Y  R  E  Y  *  Y  L  H  I  Y  F  L  K  L  G  T  I  M  A  A  F  V  L  S  L  I  L  L  L  A  L  T  G  Y  S   : S  G  A  N  Y  C  V  C  K  D  G  F  A  D  T  L  L  Q  H  N  I  D  Y  A  C  G  N  G  A  D  C  T  G  I  L  Q  N  G  P  C  Y  N  P  N  T  I  K  D  H  C  S  Y  A  V  N  S  Y  Y  Q  R  K  A  S  T  G  A  T  C  D  F  S  G  T  A  S  L  T  S  T  P  P  A   : S  S  S  S  A  C  Y  Q  T  T  G  G :   S  T  G  G  T  T  T  P  N  A  P  G  T  T  T  N  P  G  I  G  T  G  T  S  T  G  T  G  I  G  T  G  T  G  T  G  T  N  T  G  I  N  N  P  T  F  G  M  G  P  T  G  S  G  G  F  N  P  D  G  S  G  T  E  A  L  H  Q  N  R  V  F  I  T  M  A  L  L  F  T  S  S  F  L  M  V  C  L  R  I  *  K  R  K  S  E  C  E  A  V  N  E  R  K  K  G  Y  E  M  I  M  D  F  W  </first_frame>
            <second_frame>  P  P  I  F  L  V  S  R  A  P  Y  P  Y  D  T  L  S  L  F  P  L  N  I  S  S  F  C  F  L  L  Y  S  R  I  S  L  T  F  L  I  Y  T  G  N  T  N  I  F  I  S  T  S  *  S  L  A  Q  S  W  L  L  L  Y  C  L  *  Y  F  S  W  L  *  L  V  T  Q  :  V  V  L  I  T  V  C  V  K  M  V  L  R  T  H  F  C  S  T  I  *  I  M  P  V  E  M  E  L  I  V  L  V  S  F  K  M  V  L  A  T  T  L  T  L  L  K  I  T  A  P  M  L  *  I  A  I  T  R  G  R  L  Q  L  V  L  L  V  T  S  V  E  L  L  L  *  L  Q  L  H  Q  P  :  P  L  A  L  H  V  I  R  P  Q  E   : A  A  L  E  V  P  Q  P  Q  M  H  Q  E  P  Q  Q  I  Q  G  L  A  P  A  L  A  L  A  R  A  *  A  Q  A  Q  A  Q  E  L  I  Q  V  L  T  T  Q  L  L  G  W  D  Q  Q  E  V  V  A  S  T  Q  M  A  V  A  Q  R  L  F  I  K  T  E  F  L  S  P  W  H  F  C  L  Q  A  A  S  *  W  Y  A  *  E  F  K  K  G  S  L  N  V  R  Q  *  M  K  E  K  K  V  M  R  *  *  W  T  F  G </second_frame>
            <third_frame>   H  L  F  F  L  S  R  E  L  H  I  P  M  T  H  F  L  C  S  P  *  T  S  H  L  S  A  F  F  F  T  V  E  F  H  L  P  S  *  F  I  Q  G  I  L  I  S  S  Y  L  L  L  K  A  W  H  N  H  G  C  F  C  T  V  F  N  T  S  L  G  F  N  W  L  L  K :   W  C  *  L  L  C  V  *  R  W  F  C  G  H  T  S  A  A  Q  Y  R  L  C  L  W  K  W  S  *  L  Y  W  Y  P  S  K  W  S  L  L  Q  P  *  H  Y  *  R  S  L  L  L  C  C  K  *  L  L  P  E  E  G  F  N  W  C  Y  L  *  L  Q  W  N  C  F  F  D  F  N  S  T  S  L :   L  *  L  C  M  L  S  D  H  R  R  :  Q  H  W  R  Y  H  N  P  K  C  T  R  N  H  N  K  S  R  D  W  H  R  H  *  H  W  H  G  H  R  H  R  H  R  H  R  N  *  Y  R  Y  *  Q  P  N  F  W  D  G  T  N  R  K  W  W  L  Q  P  R  W  Q  W  H  R  G  S  S  S  K  Q  S  F  Y  H  H  G  T  F  V  Y  K  Q  L  L  D  G  M  L  K  N  L  K  K  E  V  *  M  *  G  S  E  *  K  K  K  R  L  *  D  D  N  G  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25425" stop="25335"/>
                    <exon start="24814" stop="24569"/>
                    <exon start="24475" stop="24442"/>
                    <exon start="23290" stop="23017"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLHIYFLKLGTIMAAFVLSLILLLALTGYSSGANYCVCKDGFADTLLQHNIDYACGNGADCTGILQNGPCYNPNTIKDHCSYAVNSYYQRKASTGATCDFSGTASLTSTPPASSSSACYQTTGGSTGGTTTPNAPGTTTNPGIGTGTSTGTGIGTGTGTGTNTGINNPTFGMGPTGSGGFNPDGSGTEALHQNRVFITMALLFTSSFLMVCLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="31841" PGL_stop="32163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31841" e_stop="32163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="31841" e_stop="32163" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31841" stop="32163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31841" stop="32146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATATTAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTATCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  L  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  P  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  L  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  Y  *  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  Y  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  I  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  S  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  I  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0079C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32561" PGL_stop="36638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32561" e_stop="33176"/>
            <exon e_start="34882" e_stop="35113"/>
            <exon e_start="35209" e_stop="35691"/>
            <exon e_start="35834" e_stop="36040"/>
            <exon e_start="36523" e_stop="36638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.874" e_score="0.998"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32561" e_stop="33176" e_length="616"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33177" i_stop="34881" i_length="1705"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34882" e_stop="35113" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35114" i_stop="35208" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="35209" e_stop="35691" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.874">
            <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35834" e_stop="36040" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36041" i_stop="36522" i_length="482"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36523" e_stop="36638" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32561" stop="33168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32570" stop="33176"/>
              <exon start="34882" stop="35077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32579" stop="33153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32582" stop="33150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32754" stop="33176"/>
              <exon start="34882" stop="35083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34988" stop="35113"/>
              <exon start="35209" stop="35691"/>
              <exon start="35834" stop="35898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35053" stop="35113"/>
              <exon start="35209" stop="35691"/>
              <exon start="35834" stop="36040"/>
              <exon start="36523" stop="36638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35352" stop="35691"/>
              <exon start="35834" stop="35939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAG : GATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAG : AAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT : GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATCGTGCTTATCAGACATTTGCTGCAATTGAATCCACTTTTGGATTAACCCCAGATATCCATTCATACAATGCGCTGATATATGCATTTGGGAAGCTTGGCAAG : AGGGATGAAGCCACAAAAGTCTATGAGCACTTTATGGATTTAGGAGTGAAGCCAAATGAAATGACATATTCTCTACTTGTTGATGCTCATCTTATTAAGCGAGAACCGAAAGCTGC</gDNA_template>
            <first_frame> K  H  L  Q  W  R  S  *  F  D  H  D  R  *  S  E  H  *  Q  I  S  K  Q  S  Q  P  F  L  S  S  H  K  N  L  N  S  P  G  L  R  R  R  T  L  P  H  Y  P  R  I  H  P  P  V  A  H  S  T  M  K  T  G  D  P  H  L  Q  L  P  H  N  L  Y  L  L  P  L  Y  P  W  G  S  Y  A  N  R  L  L  R  V  C  R  Q  C  R  N  H  L  M  W  K  V  *  *  I  C  L  L  I  G  *  R  R  R  G  G  R  I  *  N  R  C  L  S  F  G  L  G  R  W  I  E  M  G  N  R  I  S  L  M  R  I  C  L  I  I  I  *  E  L  I  *  *  W  V  L  L  L  M  I  C  W  D  *  L  V  K  W  R  S  M  D  L  L  L  I  L  L  R  I  I  *  S  *  K  L  C  F  N  L  V  N  H  C  H  G  L  I  N  L  S  N  C  S  K   : G  *  L  Q  L  E  L  S  I  K  K  L  C  L  M  K  S  H  M  I  W  L  L  A  C  Y  L  K  Q  T  L  L  M  M  R  *  N  I  L  I  Q  P  *  N  L  G  I  S  Y  P  *  M  Y  L  M  S  V  C  E  A  V  S  T  A  T  G  W  M  H  W  C  Q  *  *  R  N  A  R :   K  Q  I  R  T  K  A  C  C  R  L  G  T  C  A  H  T  L  Q  I  V  H  Y  K  Q  I  I  V  N  *  L  L  L  P  W  S  S  L  *  N  G  L  L  E  V  R  L  *  S  P  L  F  Y  S  V  *  A  K  D  C  L  W  L  H  L  E  L  L  V  E  H  T  M  *  N  S  *  M  V  L  G  K  S  L  S  A  H  Y  G  K  *  G  S  L  T  L  S  L  S  L  Q  R  C  M  P  M  H  H  W  D  N  C  R  M  L  L  L  P  C  M  S  L  R  K  L  M  L  V  L  K  M  R  V  Q  K  N  Y  F  L  P  L  P  L  *  I  H  W  L  L  L  A  A  G  M  V  L  S  P  W  T  L :   F  T  I  S  W  R  I  *  A  E  Q  T  P  L  S  S  L  L  L  H  S  I  V  *  F  *  A  V  P  I  Y  G  I  L  I  V  L  I  R  H  L  L  Q  L  N  P  L  L  D  *  P  Q  I  S  I  H  T  M  R  *  Y  M  H  L  G  S  L  A  R :   G  M  K  P  Q  K  S  M  S  T  L  W  I  *  E  *  S  Q  M  K  *  H  I  L  Y  L  L  M  L  I  L  L  S  E  N  R  K  L  </first_frame>
            <second_frame>  N  T  Y  N  G  D  P  D  S  I  T  T  V  D  Q  N  I  N  K  F  Q  N  N  H  N  R  S  F  P  L  T  R  T  S  T  R  R  D  S  A  G  E  H  Y  P  T  T  P  E  S  I  L  R  *  P  T  L  Q  *  K  L  E  I  P  I  C  S  Y  L  T  I  C  I  F  F  R  C  T  L  G  V  L  T  P  I  A  C  C  A  Y  A  G  N  V  G  I  T  *  C  G  R  F  N  E  S  V  C  *  L  G  N  D  A  E  V  G  G  Y  E  T  G  V  *  A  L  D  *  V  V  G  *  K  W  E  T  E  *  A  *  C  E  S  V  *  L  L  F  E  S  *  F  D  D  G  C  Y  C  *  *  F  V  G  I  S  *  S  N  G  G  V  W  T  C  C  *  Y  C  F  A  *  F  D  L  E  S  Y  V  S  I  W  *  T  I  V  M  G  *  *  I  C  Q  I  A  R  K  :  D  D  C  N  W  S  *  V  *  R  S  F  A  *  *  R  V  I  *  F  G  Y  W  L  A  I  *  S  K  P  Y  *  *  C  V  E  I  Y  *  F  S  L  K  I  W  V  *  A  I  H  E  C  I  *  *  V  C  A  K  L  Y  L  Q  Q  Q  A  G  C  I  G  V  N  N  R  E  M  Q   : E  N  R  S  E  Q  R  P  V  A  A  L  E  H  V  H  T  P  C  R  *  C  I  T  S  R  *  *  *  T  S  F  Y  F  L  G  V  L  C  E  M  D  C  *  R  *  D  C  E  A  P  C  F  T  Q  C  R  R  R  T  A  C  G  C  T  W  N  C  W  *  N  I  Q  C  E  T  P  E  W  C  L  G  S  P  *  A  L  T  T  A  N  E  D  P  *  P  *  V  F  P  C  K  D  V  C  P  C  I  I  G  T  I  A  E  C  F  C  Y  P  A  *  V  *  E  S  L  C  *  F  *  R  *  E  C  R  R  T  I  F  S  L  Y  L  F  E  S  T  G  C  C  L  L  Q  E  W  F  C  H  P  G  L   : C  L  L  S  A  G  E  F  E  P  S  R  P  P  F  Q  V  S  C  C  T  Q  L  C  N  F  R  L  C  Q  Y  M  G  Y  *  S  C  L  S  D  I  C  C  N  *  I  H  F  W  I  N  P  R  Y  P  F  I  Q  C  A  D  I  C  I  W  E  A  W  Q   : E  G  *  S  H  K  S  L  *  A  L  Y  G  F  R  S  E  A  K  *  N  D  I  F  S  T  C  *  C  S  S  Y  *  A  R  T  E  S  C </second_frame>
            <third_frame>   T  L  T  M  A  I  L  I  R  S  R  P  L  I  R  T  L  T  N  F  K  T  I  T  T  V  P  F  L  S  Q  E  P  Q  L  A  G  T  P  P  E  N  T  T  P  L  P  P  N  P  S  S  G  S  P  L  Y  N  E  N  W  R  S  P  F  A  A  T  S  Q  S  V  S  S  S  V  V  P  L  G  F  L  R  Q  S  P  A  A  R  M  Q  A  M  S  E  S  L  D  V  E  G  L  M  N  L  F  A  D  W  V  T  T  Q  R  W  E  D  M  K  Q  V  F  E  L  W  I  R  S  L  D  R  N  G  K  P  N  K  P  D  A  N  L  F  N  Y  Y  L  R  A  N  L  M  M  G  A  T  A  D  D  L  L  G  L  A  S  Q  M  E  E  Y  G  L  V  A  N  T  A  S  H  N  L  I  L  K  A  M  F  Q  S  G  E  P  L  S  W  A  D  K  S  V  K  L  L  E  R :   M  I  A  T  G  V  E  Y  K  E  A  L  P  D  E  E  S  Y  D  L  V  T  G  L  L  F  K  A  N  L  I  D  D  A  L  K  Y  I  D  S  A  L  K  S  G  Y  K  L  S  M  N  V  F  N  E  C  V  R  S  C  I  Y  S  N  R  L  D  A  L  V  S  I  I  E  K  C  K  :  K  T  D  Q  N  K  G  L  L  P  P  W  N  M  C  T  H  L  A  D  S  A  L  Q  A  D  N  S  E  L  A  F  T  S  L  E  F  F  V  K  W  I  V  R  G  E  T  V  K  P  P  V  L  L  S  V  G  E  G  L  L  V  A  A  L  G  T  A  G  R  T  Y  N  V  K  L  L  N  G  A  W  E  V  L  K  R  S  L  R  Q  M  R  I  P  N  P  E  S  F  L  A  K  M  Y  A  H  A  S  L  G  Q  L  Q  N  A  F  A  T  L  H  E  F  E  K  A  Y  A  S  S  K  D  E  S  A  E  E  L  F  S  P  F  T  S  L  N  P  L  A  V  A  C  C  R  N  G  F  V  T  L  D  S  :  V  Y  Y  Q  L  E  N  L  S  R  A  D  P  P  F  K  S  L  A  A  L  N  C  V  I  L  G  C  A  N  I  W  D  I  D  R  A  Y  Q  T  F  A  A  I  E  S  T  F  G  L  T  P  D  I  H  S  Y  N  A  L  I  Y  A  F  G  K  L  G  K  :  R  D  E  A  T  K  V  Y  E  H  F  M  D  L  G  V  K  P  N  E  M  T  Y  S  L  L  V  D  A  H  L  I  K  R  E  P  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32563" stop="33176"/>
                    <exon start="34882" stop="35113"/>
                    <exon start="35209" stop="35691"/>
                    <exon start="35834" stop="36040"/>
                    <exon start="36523" stop="36636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLTMAILIRSRPLIRTLTNFKTITTVPFLSQEPQLAGTPPENTTPLPPNPSSGSPLYNENWRSPFAATSQSVSSSVVPLGFLRQSPAARMQAMSESLDVEGLMNLFADWVTTQRWEDMKQVFELWIRSLDRNGKPNKPDANLFNYYLRANLMMGATADDLLGLASQMEEYGLVANTASHNLILKAMFQSGEPLSWADKSVKLLERMIATGVEYKEALPDEESYDLVTGLLFKANLIDDALKYIDSALKSGYKLSMNVFNECVRSCIYSNRLDALVSIIEKCKKTDQNKGLLPPWNMCTHLADSALQADNSELAFTSLEFFVKWIVRGETVKPPVLLSVGEGLLVAALGTAGRTYNVKLLNGAWEVLKRSLRQMRIPNPESFLAKMYAHASLGQLQNAFATLHEFEKAYASSKDESAEELFSPFTSLNPLAVACCRNGFVTLDSVYYQLENLSRADPPFKSLAALNCVILGCANIWDIDRAYQTFAAIESTFGLTPDIHSYNALIYAFGKLGKRDEATKVYEHFMDLGVKPNEMTYSLLVDAHLIKREPKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36786" PGL_stop="37417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36786" e_stop="37417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="36786" e_stop="37417" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36786" stop="37386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36819" stop="37403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266843" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36939" stop="37403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36990" stop="37417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36990" stop="37417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37073" stop="37253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAGATCCGAAGACGATGTACTCGAGAGATGGATTATGAATCTGATGATCGAGTTGAGGAGTTGACCAAGAAGTTTAACATCCGAATGGGTGCAGAGAATCGTCGTAACATGCTCTTTAATCTTAGATACAACATGGAATATTCTGGTTAGATGTTGCTGAAGTGGAGTTAGAGGTAGCATGCATAGTCAACACCCGTTCAGAATTTCTCGCCCTTCTGCTGAGAAACTTGATGGAATGAAATATTAGTATATCAGTGCTTCTAGCATTTGAATGTTAAAAGACTCTTTTCTCTCTTCTTCTAGCTTGCCTCTGTGCTAGTTGGACAGCTGATGTTGGCGTTTCGCAAAGTTTAGCAGTGTCACATCTCATATACCTCGGGGCGATCCTCTAACCAGTGGCTGTAAATTACTTAGTTCTGGTTAGTATTGAGCTGTGGAGGATGGTGTCTGGTTAGAAGGTTTTTGTTTTAACATATTTATGTATTCTTTTTTCCACCCATTAGGTAGCTTTTAAAGACAGGGAATTGCTAATGAAATGAGATGAATCTCATTTTTTGAATAAACTGTACTCTTCATGCTGAAGCAGTTTGCATCAAGTGCAATTTTCTGCTTTATTCTTGCTTCAGT</gDNA_template>
            <first_frame> *  R  R  S  E  D  D  V  L  E  R  W  I  M  N  L  M  I  E  L  R  S  *  P  R  S  L  T  S  E  W  V  Q  R  I  V  V  T  C  S  L  I  L  D  T  T  W  N  I  L  V  R  C  C  *  S  G  V  R  G  S  M  H  S  Q  H  P  F  R  I  S  R  P  S  A  E  K  L  D  G  M  K  Y  *  Y  I  S  A  S  S  I  *  M  L  K  D  S  F  L  S  S  S  S  L  P  L  C  *  L  D  S  *  C  W  R  F  A  K  F  S  S  V  T  S  H  I  P  R  G  D  P  L  T  S  G  C  K  L  L  S  S  G  *  Y  *  A  V  E  D  G  V  W  L  E  G  F  C  F  N  I  F  M  Y  S  F  F  H  P  L  G  S  F  *  R  Q  G  I  A  N  E  M  R  *  I  S  F  F  E  *  T  V  L  F  M  L  K  Q  F  A  S  S  A  I  F  C  F  I  L  A  S   </first_frame>
            <second_frame>  E  E  D  P  K  T  M  Y  S  R  D  G  L  *  I  *  *  S  S  *  G  V  D  Q  E  V  *  H  P  N  G  C  R  E  S  S  *  H  A  L  *  S  *  I  Q  H  G  I  F  W  L  D  V  A  E  V  E  L  E  V  A  C  I  V  N  T  R  S  E  F  L  A  L  L  L  R  N  L  M  E  *  N  I  S  I  S  V  L  L  A  F  E  C  *  K  T  L  F  S  L  L  L  A  C  L  C  A  S  W  T  A  D  V  G  V  S  Q  S  L  A  V  S  H  L  I  Y  L  G  A  I  L  *  P  V  A  V  N  Y  L  V  L  V  S  I  E  L  W  R  M  V  S  G  *  K  V  F  V  L  T  Y  L  C  I  L  F  S  T  H  *  V  A  F  K  D  R  E  L  L  M  K  *  D  E  S  H  F  L  N  K  L  Y  S  S  C  *  S  S  L  H  Q  V  Q  F  S  A  L  F  L  L  Q  </second_frame>
            <third_frame>   K  K  I  R  R  R  C  T  R  E  M  D  Y  E  S  D  D  R  V  E  E  L  T  K  K  F  N  I  R  M  G  A  E  N  R  R  N  M  L  F  N  L  R  Y  N  M  E  Y  S  G  *  M  L  L  K  W  S  *  R  *  H  A  *  S  T  P  V  Q  N  F  S  P  F  C  *  E  T  *  W  N  E  I  L  V  Y  Q  C  F  *  H  L  N  V  K  R  L  F  S  L  F  F  *  L  A  S  V  L  V  G  Q  L  M  L  A  F  R  K  V  *  Q  C  H  I  S  Y  T  S  G  R  S  S  N  Q  W  L  *  I  T  *  F  W  L  V  L  S  C  G  G  W  C  L  V  R  R  F  L  F  *  H  I  Y  V  F  F  F  P  P  I  R  *  L  L  K  T  G  N  C  *  *  N  E  M  N  L  I  F  *  I  N  C  T  L  H  A  E  A  V  C  I  K  C  N  F  L  L  Y  S  C  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0079C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37395" PGL_stop="36953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37395" e_stop="36953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="37395" e_stop="36953" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37395" stop="36953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGCACTTGATGCAAACTGCTTCAGCATGAAGAGTACAGTTTATTCAAAAAATGAGATTCATCTCATTTCATTAGCAATTCCCTGTCTTTAAAAGCTACCTAATGGGTGGAAAAAAGAATACATAAATATGTTAAAACAAAAACCTTCTAACCAGACACCATCCTCCACAGCTCAATACTAACCAGAACTAAGTAATTTACAGCCACTGGTTAGAGGATCGCCCCGAGGTATATGAGATGTGACACTGCTAAACTTTGCGAAACGCCAACATCAGCTGTCCAACTAGCACAGAGGCAAGCTAGAAGAAGAGAGAAAAGAGTCTTTTAACATTCAAATGCTAGAAGCACTGATATACTAATATTTCATTCCATCAAGTTTCTCAGCAGAAGGGCGAGAAATTCTGAACGGGTGTTGACTATGCATGCTACCTCTAACTCCA</gDNA_template>
            <first_frame> K  L  H  L  M  Q  T  A  S  A  *  R  V  Q  F  I  Q  K  M  R  F  I  S  F  H  *  Q  F  P  V  F  K  S  Y  L  M  G  G  K  K  N  T  *  I  C  *  N  K  N  L  L  T  R  H  H  P  P  Q  L  N  T  N  Q  N  *  V  I  Y  S  H  W  L  E  D  R  P  E  V  Y  E  M  *  H  C  *  T  L  R  N  A  N  I  S  C  P  T  S  T  E  A  S  *  K  K  R  E  K  S  L  L  T  F  K  C  *  K  H  *  Y  T  N  I  S  F  H  Q  V  S  Q  Q  K  G  E  K  F  *  T  G  V  D  Y  A  C  Y  L  *  L   </first_frame>
            <second_frame>  N  C  T  *  C  K  L  L  Q  H  E  E  Y  S  L  F  K  K  *  D  S  S  H  F  I  S  N  S  L  S  L  K  A  T  *  W  V  E  K  R  I  H  K  Y  V  K  T  K  T  F  *  P  D  T  I  L  H  S  S  I  L  T  R  T  K  *  F  T  A  T  G  *  R  I  A  P  R  Y  M  R  C  D  T  A  K  L  C  E  T  P  T  S  A  V  Q  L  A  Q  R  Q  A  R  R  R  E  K  R  V  F  *  H  S  N  A  R  S  T  D  I  L  I  F  H  S  I  K  F  L  S  R  R  A  R  N  S  E  R  V  L  T  M  H  A  T  S  N  S  </second_frame>
            <third_frame>   I  A  L  D  A  N  C  F  S  M  K  S  T  V  Y  S  K  N  E  I  H  L  I  S  L  A  I  P  C  L  *  K  L  P  N  G  W  K  K  E  Y  I  N  M  L  K  Q  K  P  S  N  Q  T  P  S  S  T  A  Q  Y  *  P  E  L  S  N  L  Q  P  L  V  R  G  S  P  R  G  I  *  D  V  T  L  L  N  F  A  K  R  Q  H  Q  L  S  N  *  H  R  G  K  L  E  E  E  R  K  E  S  F  N  I  Q  M  L  E  A  L  I  Y  *  Y  F  I  P  S  S  F  S  A  E  G  R  E  I  L  N  G  C  *  L  C  M  L  P  L  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0079C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37908" PGL_stop="40319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37908" e_stop="38169"/>
            <exon e_start="38820" e_stop="38892"/>
            <exon e_start="39127" e_stop="39178"/>
            <exon e_start="39370" e_stop="39439"/>
            <exon e_start="40039" e_stop="40319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.992"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="37908" e_stop="38169" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38170" i_stop="38819" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38820" e_stop="38892" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="38893" i_stop="39126" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39127" e_stop="39178" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.969">
            <gDNA_intron_boundary i_start="39179" i_stop="39369" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39370" e_stop="39439" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="39440" i_stop="40038" i_length="599"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="40039" e_stop="40319" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37908" stop="38169"/>
              <exon start="38820" stop="38892"/>
              <exon start="39127" stop="39178"/>
              <exon start="39370" stop="39439"/>
              <exon start="40039" stop="40319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATATAAAAAATCAAATCTTTGATGGATGATTCTCCAAAAAAGTGGTAAATTTTCCATTCCCAGAAAATCTCAAGAACCAAAAAGCAAATGGGGCAGAATACTGGTGCAAGTGGCAAAGGGAAGAAAGAAGCAGAAACGGAAAAGGAAACAGTGGTAGAAGAAGAAGAAGAGGAAGTTGAAGAAGGTGGAGAAGAAGCTGAACAAGATGGAATGTCTGTTCATTCTCCTTGTAAACCTGCATCTTCTGCTCTTCGTAAG : GAACAATCACAGGTGGAATTGGAGATAAGATTGTTGGAGGCTCTTGAAATCTATCCCCCTGCCAAATTGAGAG : GCATCCATCGTCATTTTGTCCTATACGGCTTAACAGAGCATCTGCGTAGAAG : CTTCAATAGGCAATTTGCTCCTGATGATGTTTTGAAGCTGCTGGATCGCTTCTACAACTTGGATATGGTG : AAACCAGAGGACGAGGACTCTGAAATCCTAAATCAAGAGGAAGAGTTTTGCCTACCTCACAGTTATTTCTCGAGGGACGAACCTTGAACTAAGTTGGAATCGATATGGATATTGAACTTCTACATATGGCAGTTTTTGTATAGTAGTATCTGGGTGGTTCAATTTTTTTTTTTTTGATGCCATAAGAGATTCTGCATCTATTAATCTTACTGAAAAGTTTGTATGCATGCTGATATTTCAGCTCTCCTTATATATACAGTAGACAGTTGGATCTTTTTACA</gDNA_template>
            <first_frame> I  Y  I  K  N  Q  I  F  D  G  *  F  S  K  K  V  V  N  F  P  F  P  E  N  L  K  N  Q  K  A  N  G  A  E  Y  W  C  K  W  Q  R  E  E  R  S  R  N  G  K  G  N  S  G  R  R  R  R  R  G  S  *  R  R  W  R  R  S  *  T  R  W  N  V  C  S  F  S  L  *  T  C  I  F  C  S  S  *   : G  T  I  T  G  G  I  G  D  K  I  V  G  G  S  *  N  L  S  P  C  Q  I  E  R :   H  P  S  S  F  C  P  I  R  L  N  R  A  S  A  *  K  :  L  Q  *  A  I  C  S  *  *  C  F  E  A  A  G  S  L  L  Q  L  G  Y  G   : E  T  R  G  R  G  L  *  N  P  K  S  R  G  R  V  L  P  T  S  Q  L  F  L  E  G  R  T  L  N  *  V  G  I  D  M  D  I  E  L  L  H  M  A  V  F  V  *  *  Y  L  G  G  S  I  F  F  F  L  M  P  *  E  I  L  H  L  L  I  L  L  K  S  L  Y  A  C  *  Y  F  S  S  P  Y  I  Y  S  R  Q  L  D  L  F  T </first_frame>
            <second_frame>  Y  I  *  K  I  K  S  L  M  D  D  S  P  K  K  W  *  I  F  H  S  Q  K  I  S  R  T  K  K  Q  M  G  Q  N  T  G  A  S  G  K  G  K  K  E  A  E  T  E  K  E  T  V  V  E  E  E  E  E  E  V  E  E  G  G  E  E  A  E  Q  D  G  M  S  V  H  S  P  C  K  P  A  S  S  A  L  R  K  :  E  Q  S  Q  V  E  L  E  I  R  L  L  E  A  L  E  I  Y  P  P  A  K  L  R   : G  I  H  R  H  F  V  L  Y  G  L  T  E  H  L  R  R  S :   F  N  R  Q  F  A  P  D  D  V  L  K  L  L  D  R  F  Y  N  L  D  M  V  :  K  P  E  D  E  D  S  E  I  L  N  Q  E  E  E  F  C  L  P  H  S  Y  F  S  R  D  E  P  *  T  K  L  E  S  I  W  I  L  N  F  Y  I  W  Q  F  L  Y  S  S  I  W  V  V  Q  F  F  F  F  *  C  H  K  R  F  C  I  Y  *  S  Y  *  K  V  C  M  H  A  D  I  S  A  L  L  I  Y  T  V  D  S  W  I  F  L   </second_frame>
            <third_frame>   I  Y  K  K  S  N  L  *  W  M  I  L  Q  K  S  G  K  F  S  I  P  R  K  S  Q  E  P  K  S  K  W  G  R  I  L  V  Q  V  A  K  G  R  K  K  Q  K  R  K  R  K  Q  W  *  K  K  K  K  R  K  L  K  K  V  E  K  K  L  N  K  M  E  C  L  F  I  L  L  V  N  L  H  L  L  L  F  V  R :   N  N  H  R  W  N  W  R  *  D  C  W  R  L  L  K  S  I  P  L  P  N  *  E  :  A  S  I  V  I  L  S  Y  T  A  *  Q  S  I  C  V  E   : A  S  I  G  N  L  L  L  M  M  F  *  S  C  W  I  A  S  T  T  W  I  W  * :   N  Q  R  T  R  T  L  K  S  *  I  K  R  K  S  F  A  Y  L  T  V  I  S  R  G  T  N  L  E  L  S  W  N  R  Y  G  Y  *  T  S  T  Y  G  S  F  C  I  V  V  S  G  W  F  N  F  F  F  F  D  A  I  R  D  S  A  S  I  N  L  T  E  K  F  V  C  M  L  I  F  Q  L  S  L  Y  I  Q  *  T  V  G  S  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37960" stop="38169"/>
                    <exon start="38820" stop="38892"/>
                    <exon start="39127" stop="39178"/>
                    <exon start="39370" stop="39439"/>
                    <exon start="40039" stop="40125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFHSQKISRTKKQMGQNTGASGKGKKEAETEKETVVEEEEEEVEEGGEEAEQDGMSVHSPCKPASSALRKEQSQVELEIRLLEALEIYPPAKLRGIHRHFVLYGLTEHLRRSFNRQFAPDDVLKLLDRFYNLDMVKPEDEDSEILNQEEEFCLPHSYFSRDEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52722" PGL_stop="50897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52722" e_stop="52642"/>
            <exon e_start="51973" e_stop="51667"/>
            <exon e_start="51162" e_stop="51075"/>
            <exon e_start="50995" e_stop="50897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52722" e_stop="52642" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52641" i_stop="51974" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51973" e_stop="51667" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51666" i_stop="51163" i_length="504"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51162" e_stop="51075" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51074" i_stop="50996" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50995" e_stop="50897" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52722" stop="52642"/>
              <exon start="51973" stop="51667"/>
              <exon start="51162" stop="51075"/>
              <exon start="50995" stop="50897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGAATATGGCTTCTCAAAAGGAAAGAGAAACTCATGTTTACATGGCCAAGCTCGCCGAGCAAGCTGAGCGTTACGATG : AGATGGTTGAGAGTATGAAGAAAGTTGCAAAACTTGATGTGGAATTGACAGTGGAGGAGAGGAACTTGCTTTCTGTTGGCTACAAGAATGTCATTGGAGCTCGAAGAGCTTCATGGCGTATTATGTCTTCCATTGAACAGAAAGAAGAGTCGAAAGGGAACGAGCAAAATGTCAAGCTGATAAAAGGCTATCGTCAAAAGGTCGAGGAAGAGCTCTCGAAGATTTGCTCTGATATTCTTGATATCATTGACAAACATCTCATTCCATCTGCTGGCACTGGTGAAGCTACTGTCTTCTATTACAAAAT : GAAAGGTGACTATTTTCGTTACCTCGCTGAGTTCAAGACTGATTCCGAAAGGAAAGAGGCTTCTGAACAATCATTGAAAGGCTATGAG : GCTGCTACTGCCACTGCAAACACTGATCTCTCTTCAACTCATCCGATTCGTCTTGGTCTTGCTTTGAACTTCTCTGTTTTCTACTATGAGATCATGAAC</gDNA_template>
            <first_frame> H  *  I  W  L  L  K  R  K  E  K  L  M  F  T  W  P  S  S  P  S  K  L  S  V  T  M  :  R  W  L  R  V  *  R  K  L  Q  N  L  M  W  N  *  Q  W  R  R  G  T  C  F  L  L  A  T  R  M  S  L  E  L  E  E  L  H  G  V  L  C  L  P  L  N  R  K  K  S  R  K  G  T  S  K  M  S  S  *  *  K  A  I  V  K  R  S  R  K  S  S  R  R  F  A  L  I  F  L  I  S  L  T  N  I  S  F  H  L  L  A  L  V  K  L  L  S  S  I  T  K   : *  K  V  T  I  F  V  T  S  L  S  S  R  L  I  P  K  G  K  R  L  L  N  N  H  *  K  A  M  R :   L  L  L  P  L  Q  T  L  I  S  L  Q  L  I  R  F  V  L  V  L  L  *  T  S  L  F  S  T  M  R  S  *   </first_frame>
            <second_frame>  I  E  Y  G  F  S  K  G  K  R  N  S  C  L  H  G  Q  A  R  R  A  S  *  A  L  R  * :   D  G  *  E  Y  E  E  S  C  K  T  *  C  G  I  D  S  G  G  E  E  L  A  F  C  W  L  Q  E  C  H  W  S  S  K  S  F  M  A  Y  Y  V  F  H  *  T  E  R  R  V  E  R  E  R  A  K  C  Q  A  D  K  R  L  S  S  K  G  R  G  R  A  L  E  D  L  L  *  Y  S  *  Y  H  *  Q  T  S  H  S  I  C  W  H  W  *  S  Y  C  L  L  L  Q  N  :  E  R  *  L  F  S  L  P  R  *  V  Q  D  *  F  R  K  E  R  G  F  *  T  I  I  E  R  L  *   : G  C  Y  C  H  C  K  H  *  S  L  F  N  S  S  D  S  S  W  S  C  F  E  L  L  C  F  L  L  *  D  H  E  </second_frame>
            <third_frame>   L  N  M  A  S  Q  K  E  R  E  T  H  V  Y  M  A  K  L  A  E  Q  A  E  R  Y  D   : E  M  V  E  S  M  K  K  V  A  K  L  D  V  E  L  T  V  E  E  R  N  L  L  S  V  G  Y  K  N  V  I  G  A  R  R  A  S  W  R  I  M  S  S  I  E  Q  K  E  E  S  K  G  N  E  Q  N  V  K  L  I  K  G  Y  R  Q  K  V  E  E  E  L  S  K  I  C  S  D  I  L  D  I  I  D  K  H  L  I  P  S  A  G  T  G  E  A  T  V  F  Y  Y  K  M :   K  G  D  Y  F  R  Y  L  A  E  F  K  T  D  S  E  R  K  E  A  S  E  Q  S  L  K  G  Y  E  :  A  A  T  A  T  A  N  T  D  L  S  S  T  H  P  I  R  L  G  L  A  L  N  F  S  V  F  Y  Y  E  I  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52642"/>
                    <exon start="51973" stop="51667"/>
                    <exon start="51162" stop="51075"/>
                    <exon start="50995" stop="50897"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNMASQKERETHVYMAKLAEQAERYDEMVESMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEQNVKLIKGYRQKVEEELSKICSDILDIIDKHLIPSAGTGEATVFYYKMKGDYFRYLAEFKTDSERKEASEQSLKGYEAATATANTDLSSTHPIRLGLALNFSVFYYEIMN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69452" PGL_stop="68672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69452" e_stop="68672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="69452" e_stop="68672" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="68672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTTTCATTGACGTTGGCACCAATTTGGTGCCACACCCTCTGTTCAAGAGCGTCACCGACATGAAGGTTTTAACTATCCGATACGGAACTTAATCGTACTCTCTAAAGAAAAGGAAGTGAAGGATGAGACCCCATGTCACTATGCTTTTTGAGACTCTGCATAGATCATGTATCTACTACTGACGGTTATATATTTTGTAGTCCAGTCGTTTGCTCAAAATATATTGTTCTGAATAGATTAGTATAATTGACAACCATAATGGTGATGTGCCTTCAATTTCATAGCATAGTCACCCTAGTAGACCCATACTTAGTTGTTTCACCCTAGTAGACCCATACTTAGTTGTCAAATTCACACATCAAAAAAATAGTCATAACTATGCGCAACTTGCACCCTCTAGCGAGGTTATTCTTCATCTTTTATATTCTGATTGAACATCCATCTTAATTCATGGCATAGACATTTCTGCGCCATTTAACTTGTGGGTGTGTTAGACAGTAGTGGCATAATGTTCGCTCTCATATAACACTGCTAGTCTTATAGTTGTTCCATAAAACTTACCTTTTCGTTTAGTAGTAATCATTCTATCATGTAAAACCTTGATAGCCCTTTTCCATTTCAACCATACCATTTTTGAAGAGCATCTCAGTATCTCACCTAGATATCTATAAACACTACTCAAGCACCTCAACCCCGTCTAATCTCACATCATATTCACTCTTCTTATTTTGACTAAGCTCGTACTGCATTCGGTCTTTTGCTTTTCTTAAATCCCTTT</gDNA_template>
            <first_frame> Q  L  S  L  T  L  A  P  I  W  C  H  T  L  C  S  R  A  S  P  T  *  R  F  *  L  S  D  T  E  L  N  R  T  L  *  R  K  G  S  E  G  *  D  P  M  S  L  C  F  L  R  L  C  I  D  H  V  S  T  T  D  G  Y  I  F  C  S  P  V  V  C  S  K  Y  I  V  L  N  R  L  V  *  L  T  T  I  M  V  M  C  L  Q  F  H  S  I  V  T  L  V  D  P  Y  L  V  V  S  P  *  *  T  H  T  *  L  S  N  S  H  I  K  K  I  V  I  T  M  R  N  L  H  P  L  A  R  L  F  F  I  F  Y  I  L  I  E  H  P  S  *  F  M  A  *  T  F  L  R  H  L  T  C  G  C  V  R  Q  *  W  H  N  V  R  S  H  I  T  L  L  V  L  *  L  F  H  K  T  Y  L  F  V  *  *  *  S  F  Y  H  V  K  P  *  *  P  F  S  I  S  T  I  P  F  L  K  S  I  S  V  S  H  L  D  I  Y  K  H  Y  S  S  T  S  T  P  S  N  L  T  S  Y  S  L  F  L  F  *  L  S  S  Y  C  I  R  S  F  A  F  L  K  S  L  </first_frame>
            <second_frame>  N  F  H  *  R  W  H  Q  F  G  A  T  P  S  V  Q  E  R  H  R  H  E  G  F  N  Y  P  I  R  N  L  I  V  L  S  K  E  K  E  V  K  D  E  T  P  C  H  Y  A  F  *  D  S  A  *  I  M  Y  L  L  L  T  V  I  Y  F  V  V  Q  S  F  A  Q  N  I  L  F  *  I  D  *  Y  N  *  Q  P  *  W  *  C  A  F  N  F  I  A  *  S  P  *  *  T  H  T  *  L  F  H  P  S  R  P  I  L  S  C  Q  I  H  T  S  K  K  *  S  *  L  C  A  T  C  T  L  *  R  G  Y  S  S  S  F  I  F  *  L  N  I  H  L  N  S  W  H  R  H  F  C  A  I  *  L  V  G  V  L  D  S  S  G  I  M  F  A  L  I  *  H  C  *  S  Y  S  C  S  I  K  L  T  F  S  F  S  S  N  H  S  I  M  *  N  L  D  S  P  F  P  F  Q  P  Y  H  F  *  R  A  S  Q  Y  L  T  *  I  S  I  N  T  T  Q  A  P  Q  P  R  L  I  S  H  H  I  H  S  S  Y  F  D  *  A  R  T  A  F  G  L  L  L  F  L  N  P  F </second_frame>
            <third_frame>   T  F  I  D  V  G  T  N  L  V  P  H  P  L  F  K  S  V  T  D  M  K  V  L  T  I  R  Y  G  T  *  S  Y  S  L  K  K  R  K  *  R  M  R  P  H  V  T  M  L  F  E  T  L  H  R  S  C  I  Y  Y  *  R  L  Y  I  L  *  S  S  R  L  L  K  I  Y  C  S  E  *  I  S  I  I  D  N  H  N  G  D  V  P  S  I  S  *  H  S  H  P  S  R  P  I  L  S  C  F  T  L  V  D  P  Y  L  V  V  K  F  T  H  Q  K  N  S  H  N  Y  A  Q  L  A  P  S  S  E  V  I  L  H  L  L  Y  S  D  *  T  S  I  L  I  H  G  I  D  I  S  A  P  F  N  L  W  V  C  *  T  V  V  A  *  C  S  L  S  Y  N  T  A  S  L  I  V  V  P  *  N  L  P  F  R  L  V  V  I  I  L  S  C  K  T  L  I  A  L  F  H  F  N  H  T  I  F  E  E  H  L  S  I  S  P  R  Y  L  *  T  L  L  K  H  L  N  P  V  *  S  H  I  I  F  T  L  L  I  L  T  K  L  V  L  H  S  V  F  C  F  S  *  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0079C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77833" PGL_stop="74475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77833" e_stop="77814"/>
            <exon e_start="76857" e_stop="76632"/>
            <exon e_start="76144" e_stop="75996"/>
            <exon e_start="75855" e_stop="75552"/>
            <exon e_start="75094" e_stop="74962"/>
            <exon e_start="74878" e_stop="74475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77833" e_stop="77814" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.972">
            <gDNA_intron_boundary i_start="77813" i_stop="76858" i_length="956"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76857" e_stop="76632" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.664" acc_prob="0.905">
            <gDNA_intron_boundary i_start="76631" i_stop="76145" i_length="487"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="76144" e_stop="75996" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75995" i_stop="75856" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75855" e_stop="75552" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.874">
            <gDNA_intron_boundary i_start="75551" i_stop="75095" i_length="457"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75094" e_stop="74962" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74961" i_stop="74879" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="74878" e_stop="74475" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77833" stop="77814"/>
              <exon start="76857" stop="76632"/>
              <exon start="76144" stop="75996"/>
              <exon start="75855" stop="75552"/>
              <exon start="75094" stop="74988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75836" stop="75552"/>
              <exon start="75094" stop="74962"/>
              <exon start="74878" stop="74850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75832" stop="75552"/>
              <exon start="75094" stop="74962"/>
              <exon start="74878" stop="74475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCATTTGGGATAGCAAAG : ATGGGCTGTTTCTTATTGAAATTGACCGTTTACTCAAGCCTGGTGGTTACTTTGTCTTAACCTCACCTACAACCCAGCAGCAGGATAGTACTACCAATACAAAGAACGGAATTACATCTAGTTCACTGGAAGGATTCACTAAGAAGCTCTGTTGGTCTCTTTTGGCACAGCAAGAAGAGACGTTTATTTGGCAGAAGACAGCTGATTCTCAGTGTTATACATCCAG : TCAGGGTGAGATACCAGTTTGTAAAGGAAATGAGATGCAAATGTACTACCAACCACTTGCACACTGTATATCTGGGACAACGAGTCGCCGGTGGGTTCCAATTCATAGCAAATCTGATCATCTGAACTCAACTGAGCTTGAAATTCATG : GGCTCCATCCTGATGATTTCTTCGAGGATTCAAACTTCTGGAAATTAGCTCTGAGAAATTATTGGTCTTTGCTATCACCCTTGATTTTCTCTGACCATCCGAAAAGGCCAGGAGATGATGATCCATTACCTCCATATAATATGGTGCGTAATGTCATGGACATGAATGCTCATTATGGCGGTCTTAGTGCTGCATTAATGGAGGCAAGAAAAGCCGTATGGGTGATGAATGTGGTTCCTCTTGGGGCACGTAATACACTTCCTCTCATACATGATCAAGGTTTTGCCGGTGTTCTGCATAACTG : GTGTGAACCCTTCCCTACATATCCCCGAACGTATGATTTGCTCCATGCAAATGGGCTCCTTTCCCATATTGCTTCACAAAAATGCAGCATGTTTGAACTACTTCTGGAGATGGATCGTATTTTAAGGCCTGAG : GGATGGATTATTCTTTCTGATACATTGGGTACAATAGAGAAAGCACGTACATTAGCTGCCCAAATCCGCTGGGAAGCCAGGGTGATCGACCTCCAGAATGGAAGTGACCAGCGACTACTTGTATGCCAAAAACCATTCGTGAGGAAGTGATATTCTGCAAAATGCATAACTTCACCAATCCAATGGTTGTCCAGTCCTTTTTAACACTGGTAAGTTCTTAACTTCTCGTGTAAACTAGGAATAAGTATGAAAACGCGGAAGTTCAATTGAAAATCTGTAAATCCGCGCTTTCTGTCATATATATTTTTTTCATGAAGTGGACTACATTTTGATATTACAAGGCCACAAGCTGCGCGTTGACGTCTGAATCTCGTGGTCCTCGCATAATATGGTGCTCACAAAGC</gDNA_template>
            <first_frame> N  H  L  G  *  Q  R :   W  A  V  S  Y  *  N  *  P  F  T  Q  A  W  W  L  L  C  L  N  L  T  Y  N  P  A  A  G  *  Y  Y  Q  Y  K  E  R  N  Y  I  *  F  T  G  R  I  H  *  E  A  L  L  V  S  F  G  T  A  R  R  D  V  Y  L  A  E  D  S  *  F  S  V  L  Y  I  Q  :  S  G  *  D  T  S  L  *  R  K  *  D  A  N  V  L  P  T  T  C  T  L  Y  I  W  D  N  E  S  P  V  G  S  N  S  *  Q  I  *  S  S  E  L  N  *  A  *  N  S  W :   A  P  S  *  *  F  L  R  G  F  K  L  L  E  I  S  S  E  K  L  L  V  F  A  I  T  L  D  F  L  *  P  S  E  K  A  R  R  *  *  S  I  T  S  I  *  Y  G  A  *  C  H  G  H  E  C  S  L  W  R  S  *  C  C  I  N  G  G  K  K  S  R  M  G  D  E  C  G  S  S  W  G  T  *  Y  T  S  S  H  T  *  S  R  F  C  R  C  S  A  *  L  :  V  *  T  L  P  Y  I  S  P  N  V  *  F  A  P  C  K  W  A  P  F  P  Y  C  F  T  K  M  Q  H  V  *  T  T  S  G  D  G  S  Y  F  K  A  *   : G  M  D  Y  S  F  *  Y  I  G  Y  N  R  E  S  T  Y  I  S  C  P  N  P  L  G  S  Q  G  D  R  P  P  E  W  K  *  P  A  T  T  C  M  P  K  T  I  R  E  E  V  I  F  C  K  M  H  N  F  T  N  P  M  V  V  Q  S  F  L  T  L  V  S  S  *  L  L  V  *  T  R  N  K  Y  E  N  A  E  V  Q  L  K  I  C  K  S  A  L  S  V  I  Y  I  F  F  M  K  W  T  T  F  *  Y  Y  K  A  T  S  C  A  L  T  S  E  S  R  G  P  R  I  I  W  C  S  Q  S </first_frame>
            <second_frame>  I  I  W  D  S  K   : D  G  L  F  L  I  E  I  D  R  L  L  K  P  G  G  Y  F  V  L  T  S  P  T  T  Q  Q  Q  D  S  T  T  N  T  K  N  G  I  T  S  S  S  L  E  G  F  T  K  K  L  C  W  S  L  L  A  Q  Q  E  E  T  F  I  W  Q  K  T  A  D  S  Q  C  Y  T  S  S :   Q  G  E  I  P  V  C  K  G  N  E  M  Q  M  Y  Y  Q  P  L  A  H  C  I  S  G  T  T  S  R  R  W  V  P  I  H  S  K  S  D  H  L  N  S  T  E  L  E  I  H   : G  L  H  P  D  D  F  F  E  D  S  N  F  W  K  L  A  L  R  N  Y  W  S  L  L  S  P  L  I  F  S  D  H  P  K  R  P  G  D  D  D  P  L  P  P  Y  N  M  V  R  N  V  M  D  M  N  A  H  Y  G  G  L  S  A  A  L  M  E  A  R  K  A  V  W  V  M  N  V  V  P  L  G  A  R  N  T  L  P  L  I  H  D  Q  G  F  A  G  V  L  H  N  W :   C  E  P  F  P  T  Y  P  R  T  Y  D  L  L  H  A  N  G  L  L  S  H  I  A  S  Q  K  C  S  M  F  E  L  L  L  E  M  D  R  I  L  R  P  E  :  G  W  I  I  L  S  D  T  L  G  T  I  E  K  A  R  T  L  A  A  Q  I  R  W  E  A  R  V  I  D  L  Q  N  G  S  D  Q  R  L  L  V  C  Q  K  P  F  V  R  K  *  Y  S  A  K  C  I  T  S  P  I  Q  W  L  S  S  P  F  *  H  W  *  V  L  N  F  S  C  K  L  G  I  S  M  K  T  R  K  F  N  *  K  S  V  N  P  R  F  L  S  Y  I  F  F  S  *  S  G  L  H  F  D  I  T  R  P  Q  A  A  R  *  R  L  N  L  V  V  L  A  *  Y  G  A  H  K   </second_frame>
            <third_frame>   S  F  G  I  A  K  :  M  G  C  F  L  L  K  L  T  V  Y  S  S  L  V  V  T  L  S  *  P  H  L  Q  P  S  S  R  I  V  L  P  I  Q  R  T  E  L  H  L  V  H  W  K  D  S  L  R  S  S  V  G  L  F  W  H  S  K  K  R  R  L  F  G  R  R  Q  L  I  L  S  V  I  H  P   : V  R  V  R  Y  Q  F  V  K  E  M  R  C  K  C  T  T  N  H  L  H  T  V  Y  L  G  Q  R  V  A  G  G  F  Q  F  I  A  N  L  I  I  *  T  Q  L  S  L  K  F  M  :  G  S  I  L  M  I  S  S  R  I  Q  T  S  G  N  *  L  *  E  I  I  G  L  C  Y  H  P  *  F  S  L  T  I  R  K  G  Q  E  M  M  I  H  Y  L  H  I  I  W  C  V  M  S  W  T  *  M  L  I  M  A  V  L  V  L  H  *  W  R  Q  E  K  P  Y  G  *  *  M  W  F  L  L  G  H  V  I  H  F  L  S  Y  M  I  K  V  L  P  V  F  C  I  T   : G  V  N  P  S  L  H  I  P  E  R  M  I  C  S  M  Q  M  G  S  F  P  I  L  L  H  K  N  A  A  C  L  N  Y  F  W  R  W  I  V  F  *  G  L  R :   D  G  L  F  F  L  I  H  W  V  Q  *  R  K  H  V  H  *  L  P  K  S  A  G  K  P  G  *  S  T  S  R  M  E  V  T  S  D  Y  L  Y  A  K  N  H  S  *  G  S  D  I  L  Q  N  A  *  L  H  Q  S  N  G  C  P  V  L  F  N  T  G  K  F  L  T  S  R  V  N  *  E  *  V  *  K  R  G  S  S  I  E  N  L  *  I  R  A  F  C  H  I  Y  F  F  H  E  V  D  Y  I  L  I  L  Q  G  H  K  L  R  V  D  V  *  I  S  W  S  S  H  N  M  V  L  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77832" stop="77814"/>
                    <exon start="76857" stop="76632"/>
                    <exon start="76144" stop="75996"/>
                    <exon start="75855" stop="75552"/>
                    <exon start="75094" stop="74962"/>
                    <exon start="74878" stop="74729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIWDSKDGLFLIEIDRLLKPGGYFVLTSPTTQQQDSTTNTKNGITSSSLEGFTKKLCWSLLAQQEETFIWQKTADSQCYTSSQGEIPVCKGNEMQMYYQPLAHCISGTTSRRWVPIHSKSDHLNSTELEIHGLHPDDFFEDSNFWKLALRNYWSLLSPLIFSDHPKRPGDDDPLPPYNMVRNVMDMNAHYGGLSAALMEARKAVWVMNVVPLGARNTLPLIHDQGFAGVLHNWCEPFPTYPRTYDLLHANGLLSHIASQKCSMFELLLEMDRILRPEGWIILSDTLGTIEKARTLAAQIRWEARVIDLQNGSDQRLLVCQKPFVRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79766" PGL_stop="78775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79766" e_stop="79630"/>
            <exon e_start="79408" e_stop="78775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.985"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="79766" e_stop="79630" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79629" i_stop="79409" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="79408" e_stop="78775" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79766" stop="79630"/>
              <exon start="79408" stop="78775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79744" stop="79630"/>
              <exon start="79408" stop="78814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTCTTTATATGTCAATACCAATCCCAACTCTGCATAGCTTTCTGCAACTGTCACAATATATATATATATTGAGAAAATAGAGAGACATTCCTACATTTTATGTCCATCCCATTTATCAAGACTCAATCTTTAG : GGTGATCTGAGGATTTGGATTGCTTGGTTTGTAAGGGAATAGAGAGAGTTGTTTCAGAATTGGCATTGGTTGGATTGGTTGTGTGTTGTGTGAGAGAATTGTGAGTCATTGGTAGTTGATGTGTCATAATGTTTTAGGAGGGGCTTTTCACTGATCTGCCATTTGATTGTTGTACTTGGTGATTGTGGAGACTTGTGGTATTGGAATTTCACCTGATTTGTAATCTTGTTTAGTTTGGTATGATTGGAGAATTTCTTTATGTTGAGCTTAGGTAGTGGTTTAAACAGATGCCAGTTGAAATTGTTTGGATTTTGGGTGATATATATGGGAGATGGTCTCTGATGATATATTACATTTTTCATAGTTGTTGGAGGTTCAGGTTGAAGCAATAGCTACCACCTAGTGGTCTAATTCAACTCGATTTTCGAAGGGGTTCTTGAAACTTGGCCATGAGAAGCCCTTTGGTCAATAAACTATCATTAATTTTCGGCCCTAGACCGCCACTCAACCGAATACTCTTGTGTCTGGTCAGTGTCTGTGTGCTACTAGTATTGTTATCATCATTTTCTACTACTACCTTTGACTCGGCGACTTCCTATGCAAAGCCTGATATCTATACAAATTATAGAAAGCT</gDNA_template>
            <first_frame> I  F  L  Y  M  S  I  P  I  P  T  L  H  S  F  L  Q  L  S  Q  Y  I  Y  I  L  R  K  *  R  D  I  P  T  F  Y  V  H  P  I  Y  Q  D  S  I  F  R :   V  I  *  G  F  G  L  L  G  L  *  G  N  R  E  S  C  F  R  I  G  I  G  W  I  G  C  V  L  C  E  R  I  V  S  H  W  *  L  M  C  H  N  V  L  G  G  A  F  H  *  S  A  I  *  L  L  Y  L  V  I  V  E  T  C  G  I  G  I  S  P  D  L  *  S  C  L  V  W  Y  D  W  R  I  S  L  C  *  A  *  V  V  V  *  T  D  A  S  *  N  C  L  D  F  G  *  Y  I  W  E  M  V  S  D  D  I  L  H  F  S  *  L  L  E  V  Q  V  E  A  I  A  T  T  *  W  S  N  S  T  R  F  S  K  G  F  L  K  L  G  H  E  K  P  F  G  Q  *  T  I  I  N  F  R  P  *  T  A  T  Q  P  N  T  L  V  S  G  Q  C  L  C  A  T  S  I  V  I  I  I  F  Y  Y  Y  L  *  L  G  D  F  L  C  K  A  *  Y  L  Y  K  L  *  K  A </first_frame>
            <second_frame>  S  F  F  I  C  Q  Y  Q  S  Q  L  C  I  A  F  C  N  C  H  N  I  Y  I  Y  *  E  N  R  E  T  F  L  H  F  M  S  I  P  F  I  K  T  Q  S  L   : G  *  S  E  D  L  D  C  L  V  C  K  G  I  E  R  V  V  S  E  L  A  L  V  G  L  V  V  C  C  V  R  E  L  *  V  I  G  S  *  C  V  I  M  F  *  E  G  L  F  T  D  L  P  F  D  C  C  T  W  *  L  W  R  L  V  V  L  E  F  H  L  I  C  N  L  V  *  F  G  M  I  G  E  F  L  Y  V  E  L  R  *  W  F  K  Q  M  P  V  E  I  V  W  I  L  G  D  I  Y  G  R  W  S  L  M  I  Y  Y  I  F  H  S  C  W  R  F  R  L  K  Q  *  L  P  P  S  G  L  I  Q  L  D  F  R  R  G  S  *  N  L  A  M  R  S  P  L  V  N  K  L  S  L  I  F  G  P  R  P  P  L  N  R  I  L  L  C  L  V  S  V  C  V  L  L  V  L  L  S  S  F  S  T  T  T  F  D  S  A  T  S  Y  A  K  P  D  I  Y  T  N  Y  R  K   </second_frame>
            <third_frame>   L  S  L  Y  V  N  T  N  P  N  S  A  *  L  S  A  T  V  T  I  Y  I  Y  I  E  K  I  E  R  H  S  Y  I  L  C  P  S  H  L  S  R  L  N  L  *  :  G  D  L  R  I  W  I  A  W  F  V  R  E  *  R  E  L  F  Q  N  W  H  W  L  D  W  L  C  V  V  *  E  N  C  E  S  L  V  V  D  V  S  *  C  F  R  R  G  F  S  L  I  C  H  L  I  V  V  L  G  D  C  G  D  L  W  Y  W  N  F  T  *  F  V  I  L  F  S  L  V  *  L  E  N  F  F  M  L  S  L  G  S  G  L  N  R  C  Q  L  K  L  F  G  F  W  V  I  Y  M  G  D  G  L  *  *  Y  I  T  F  F  I  V  V  G  G  S  G  *  S  N  S  Y  H  L  V  V  *  F  N  S  I  F  E  G  V  L  E  T  W  P  *  E  A  L  W  S  I  N  Y  H  *  F  S  A  L  D  R  H  S  T  E  Y  S  C  V  W  S  V  S  V  C  Y  *  Y  C  Y  H  H  F  L  L  L  P  L  T  R  R  L  P  M  Q  S  L  I  S  I  Q  I  I  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78968" stop="78777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLAMRSPLVNKLSLIFGPRPPLNRILLCLVSVCVLLVLLSSFSTTTFDSATSYAKPDIYTNYRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="86513" PGL_stop="82942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86513" e_stop="86353"/>
            <exon e_start="86259" e_stop="86042"/>
            <exon e_start="85488" e_stop="85374"/>
            <exon e_start="85048" e_stop="84959"/>
            <exon e_start="84769" e_stop="84596"/>
            <exon e_start="84505" e_stop="84386"/>
            <exon e_start="84053" e_stop="83943"/>
            <exon e_start="83239" e_stop="83158"/>
            <exon e_start="83086" e_stop="82942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.439" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.962" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.982"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86513" e_stop="86353" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.816">
            <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86259" e_stop="86042" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85488" e_stop="85374" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85048" e_stop="84959" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84769" e_stop="84596" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.283" acc_prob="0.439">
            <gDNA_intron_boundary i_start="84595" i_stop="84506" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="84505" e_stop="84386" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.685" acc_prob="0.962">
            <gDNA_intron_boundary i_start="84385" i_stop="84054" i_length="332"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="84053" e_stop="83943" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83942" i_stop="83240" i_length="703"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83239" e_stop="83158" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="83157" i_stop="83087" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83086" e_stop="82942" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86513" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="84959"/>
              <exon start="84769" stop="84596"/>
              <exon start="84505" stop="84391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86512" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="84959"/>
              <exon start="84769" stop="84596"/>
              <exon start="84505" stop="84386"/>
              <exon start="84053" stop="84035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86507" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="84959"/>
              <exon start="84769" stop="84725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86507" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="85010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84418" stop="84386"/>
              <exon start="84053" stop="83943"/>
              <exon start="83239" stop="83158"/>
              <exon start="83086" stop="82942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGACTGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT : TTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG : GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT : GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG : GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGACTCGGGAGCGGTGCTAGAGGAACTGGTGAAGGAAATACGTGATGTTAATTCCCTTGCTAATATTATTCATTCTGTGCGGTGCCAAGTTGACTTATCGAAGATATTAAACTGTCAGGCATATGATCCTACT : CATGCTGCTCATCTTGAAGCATTGTTAAAGGAGAACAAATCTCTAACTACTAAAGGCCTTCATGACAGTGAAGTCAGAACATTGTGCATCTGTGACGCGCAGCAGATTGATCTTGATAAG : GTTCGTATATGGCTTGAGGAGCTCCTTTGGGATAAAAAGTATGGCATGGACGTTTATCGTTGCAAGGGAATTTTAAGAGTCAGAAACTCGGATGAACTCCACACTTTACAG : GGCGTGAGAGAAATATATGAAATTGTTCCAAGTCGTAAATGGAGAAACGAAGAGATTCAGATGAACAAAATAGTATTTATAG : GCCGCTTTCTCAATGAAGAGATCCTTTTGCACTCATTACATACTTGCATTGTTGGAACTAATTGACTCGCATAGAATTCGATTAAATCCTATTTTCTATCGTTAAGATGGAAAACTAAATCAAGAATTCTCTATCTTCATCATTA</gDNA_template>
            <first_frame> I  D  *  R  R  *  A  W  R  I  P  T  K  N  R  R  S  P  S  K  S  T  T  P  S  T  L  I  N  *  Q  R  A  Q  S  F  R  R  L  A  S  P  S  S  P  A  I  S  V  P  E  N  P  L :   *  S  I  T  Y  *  K  L  N  M  A  R  K  *  Q  *  Y  L  M  S  L  V  R  N  *  E  L  R  E  Q  *  *  M  K  G  K  K  V  I  L  W  R  N  G  *  S  L  Q  M  D  V  F  A  V  L  *  S  I  V  W  F  K  H  W  S  N  L  F  R  E  K  R   : G  L  I  I  Y  C  *  R  L  L  V  W  Q  T  L  H  L  L  H  L  C  F  G  W  M  I  S  W  N  Q  M  L  G  L  T  P  *  S  L :   L  L  M  Q  R  T  F  G  I  S  *  N  Q  I  L  T  P  L  H  F  L  K  L  I  Y  K  *  L  L  R :   M  L  S  F  L  T  R  *  I  *  F  L  *  M  T  R  E  R  C  *  R  N  W  *  R  K  Y  V  M  L  I  P  L  L  I  L  F  I  L  C  G  A  K  L  T  Y  R  R  Y  *  T  V  R  H  M  I  L  L :   M  L  L  I  L  K  H  C  *  R  R  T  N  L  *  L  L  K  A  F  M  T  V  K  S  E  H  C  A  S  V  T  R  S  R  L  I  L  I  R :   F  V  Y  G  L  R  S  S  F  G  I  K  S  M  A  W  T  F  I  V  A  R  E  F  *  E  S  E  T  R  M  N  S  T  L  Y  R :   A  *  E  K  Y  M  K  L  F  Q  V  V  N  G  E  T  K  R  F  R  *  T  K  *  Y  L  *  :  A  A  F  S  M  K  R  S  F  C  T  H  Y  I  L  A  L  L  E  L  I  D  S  H  R  I  R  L  N  P  I  F  Y  R  *  D  G  K  L  N  Q  E  F  S  I  F  I  I  </first_frame>
            <second_frame>  S  T  E  D  A  E  H  G  E  F  R  R  R  T  A  A  R  R  R  N  Q  R  R  R  Q  L  *  S  T  D  K  E  L  K  A  S  A  G  W  R  H  R  H  H  R  L  S  R  F  R  K  I  H   : F  D  Q  L  H  I  E  N  S  T  W  Q  E  N  S  S  D  T  *  *  V  W  *  G  I  R  S  *  E  S  N  D  K  *  R  G  R  R  *  S  C  G  G  M  G  R  A  C  K  W  M  Y  L  L  Y  C  E  A  *  F  G  S  S  I  G  A  T  C  S  E  K  R  E  :  A  *  S  Y  I  A  R  D  Y  W  F  G  K  P  C  T  S  C  I  C  A  L  V  G  *  S  A  G  I  R  C  *  A  *  L  H  N  H   : C  C  *  C  K  E  P  S  V  S  A  K  T  K  S  *  L  L  F  I  S  *  S  L  F  T  N  S  F  C   : G  C  Y  H  S  *  Q  G  R  S  N  F  S  R  *  L  G  S  G  A  R  G  T  G  E  G  N  T  *  C  *  F  P  C  *  Y  Y  S  F  C  A  V  P  S  *  L  I  E  D  I  K  L  S  G  I  *  S  Y   : S  C  C  S  S  *  S  I  V  K  G  E  Q  I  S  N  Y  *  R  P  S  *  Q  *  S  Q  N  I  V  H  L  *  R  A  A  D  *  S  *  *   : G  S  Y  M  A  *  G  A  P  L  G  *  K  V  W  H  G  R  L  S  L  Q  G  N  F  K  S  Q  K  L  G  *  T  P  H  F  T   : G  R  E  R  N  I  *  N  C  S  K  S  *  M  E  K  R  R  D  S  D  E  Q  N  S  I  Y  R :   P  L  S  Q  *  R  D  P  F  A  L  I  T  Y  L  H  C  W  N  *  L  T  R  I  E  F  D  *  I  L  F  S  I  V  K  M  E  N  *  I  K  N  S  L  S  S  S  L </second_frame>
            <third_frame>   R  L  K  T  L  S  M  E  N  S  D  E  E  P  P  L  A  V  E  I  N  D  A  V  N  S  N  Q  L  T  K  S  S  K  L  P  P  V  G  V  T  V  I  T  G  Y  L  G  S  G  K  S  T  :  L  I  N  Y  I  L  K  T  Q  H  G  K  K  I  A  V  I  L  N  E  F  G  E  E  L  G  V  E  R  A  M  I  N  E  G  E  E  G  D  L  V  E  E  W  V  E  L  A  N  G  C  I  C  C  T  V  K  H  S  L  V  Q  A  L  E  Q  L  V  Q  R  K  E  R :   L  D  H  I  L  L  E  T  T  G  L  A  N  P  A  P  L  A  S  V  L  W  L  D  D  Q  L  E  S  D  V  R  L  D  S  I  I  T  :  V  V  D  A  K  N  L  R  Y  Q  L  K  P  N  P  D  S  S  S  F  P  E  A  Y  L  Q  I  A  F  A  :  D  V  I  I  L  N  K  V  D  L  I  S  L  D  D  S  G  A  V  L  E  E  L  V  K  E  I  R  D  V  N  S  L  A  N  I  I  H  S  V  R  C  Q  V  D  L  S  K  I  L  N  C  Q  A  Y  D  P  T  :  H  A  A  H  L  E  A  L  L  K  E  N  K  S  L  T  T  K  G  L  H  D  S  E  V  R  T  L  C  I  C  D  A  Q  Q  I  D  L  D  K  :  V  R  I  W  L  E  E  L  L  W  D  K  K  Y  G  M  D  V  Y  R  C  K  G  I  L  R  V  R  N  S  D  E  L  H  T  L  Q  :  G  V  R  E  I  Y  E  I  V  P  S  R  K  W  R  N  E  E  I  Q  M  N  K  I  V  F  I   : G  R  F  L  N  E  E  I  L  L  H  S  L  H  T  C  I  V  G  T  N  *  L  A  *  N  S  I  K  S  Y  F  L  S  L  R  W  K  T  K  S  R  I  L  Y  L  H  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86511" stop="86353"/>
                    <exon start="86259" stop="86042"/>
                    <exon start="85488" stop="85374"/>
                    <exon start="85048" stop="84959"/>
                    <exon start="84769" stop="84596"/>
                    <exon start="84505" stop="84386"/>
                    <exon start="84053" stop="83943"/>
                    <exon start="83239" stop="83158"/>
                    <exon start="83086" stop="83022"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLKTLSMENSDEEPPLAVEINDAVNSNQLTKSSKLPPVGVTVITGYLGSGKSTLINYILKTQHGKKIAVILNEFGEELGVERAMINEGEEGDLVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESDVRLDSIITVVDAKNLRYQLKPNPDSSSFPEAYLQIAFADVIILNKVDLISLDDSGAVLEELVKEIRDVNSLANIIHSVRCQVDLSKILNCQAYDPTHAAHLEALLKENKSLTTKGLHDSEVRTLCICDAQQIDLDKVRIWLEELLWDKKYGMDVYRCKGILRVRNSDELHTLQGVREIYEIVPSRKWRNEEIQMNKIVFIGRFLNEEILLHSLHTCIVGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86980" PGL_stop="87778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86980" e_stop="87150"/>
            <exon e_start="87232" e_stop="87778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.477" acc_prob="0.900" e_score="0.947"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="86980" e_stop="87150" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.477" acc_prob="0.900">
            <gDNA_intron_boundary i_start="87151" i_stop="87231" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="87232" e_stop="87778" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86980" stop="87150"/>
              <exon start="87232" stop="87778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAAATTTTAGTCGTTTTCCTTTTTTTTCCTTATTCAACAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCTATTGTTTGTTCTTATTAGATCTCAAATTAGTCACAGAATGAATGAATCATCTTCAACTATGAGGATTACCAGAG : GGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAATATGACCCTACGGCAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGAAAAATAGTAAACATTGATTCAGAGGAAAATGTATGTGAAGTTGACGGATCTGAAGAACATCATAATCATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTTGTTACTTAGATGTCAATATACAAAAAAATATTATTTAAGTAAATTTTGTATTCACGTAATTGTATATAGTATATTGCATGTTTAGTACACACATGTTTTAGTTATATATTTGTATATGTGTCTGTAGATTTGATTACTTTATACATACTTTACGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTTGTAACAGATTGTATATTTAAAGGCTCATTATTATTTTTATTTTTGTATATATATACACAAAGTAATTGGACTTAGTTATACAGATGAAAAAAT</gDNA_template>
            <first_frame> P  K  F  *  S  F  S  F  F  F  L  I  Q  Q  L  Y  M  Y  C  V  S  Y  V  F  S  Y  F  F  D  E  I  I  Y  C  L  F  L  L  D  L  K  L  V  T  E  *  M  N  H  L  Q  L  *  G  L  P  E  :  G  L  W  *  N  Q  N  K  F  N  M  N  K  Q  W  K  N  *  D  Q  R  K  N  M  T  L  R  Q  F  K  K  L  L  T  M  L  K  L  E  A  L  K  L  Y  K  E  E  E  R  E  K  *  *  T  L  I  Q  R  K  M  Y  V  K  L  T  D  L  K  N  I  I  I  M  R  *  W  L  K  T  Q  I  *  I  Q  F  F  L  L  L  R  C  Q  Y  T  K  K  Y  Y  L  S  K  F  C  I  H  V  I  V  Y  S  I  L  H  V  *  Y  T  H  V  L  V  I  Y  L  Y  M  C  L  *  I  *  L  L  Y  T  Y  F  T  L  C  I  M  N  N  I  L  S  L  N  S  G  C  N  R  L  Y  I  *  R  L  I  I  I  F  I  F  V  Y  I  Y  T  K  *  L  D  L  V  I  Q  M  K  K  </first_frame>
            <second_frame>  L  N  F  S  R  F  P  F  F  S  L  F  N  N  C  I  C  I  V  F  L  M  F  F  H  I  F  L  M  K  *  S  I  V  C  S  Y  *  I  S  N  *  S  Q  N  E  *  I  I  F  N  Y  E  D  Y  Q  R :   V  Y  G  K  I  K  T  S  S  T  *  T  N  N  G  R  I  E  I  K  E  K  I  *  P  Y  G  S  S  R  S  Y  *  Q  C  *  S  *  R  H  *  N  C  T  R  R  K  K  E  K  N  S  K  H  *  F  R  G  K  C  M  *  S  *  R  I  *  R  T  S  *  S  *  G  S  G  L  K  H  K  F  R  Y  N  F  F  C  Y  L  D  V  N  I  Q  K  N  I  I  *  V  N  F  V  F  T  *  L  Y  I  V  Y  C  M  F  S  T  H  M  F  *  L  Y  I  C  I  C  V  C  R  F  D  Y  F  I  H  T  L  R  Y  V  *  *  I  I  Y  *  V  L  I  V  V  V  T  D  C  I  F  K  G  S  L  L  F  L  F  L  Y  I  Y  T  Q  S  N  W  T  *  L  Y  R  *  K  N </second_frame>
            <third_frame>   *  I  L  V  V  F  L  F  F  P  Y  S  T  I  V  Y  V  L  C  F  L  C  F  F  I  F  F  *  *  N  N  L  L  F  V  L  I  R  S  Q  I  S  H  R  M  N  E  S  S  S  T  M  R  I  T  R   : G  S  M  V  K  S  K  Q  V  Q  H  E  Q  T  M  E  E  L  R  S  K  K  K  Y  D  P  T  A  V  Q  E  V  I  N  N  A  K  A  R  G  I  K  I  V  Q  G  G  R  K  R  K  I  V  N  I  D  S  E  E  N  V  C  E  V  D  G  S  E  E  H  H  N  H  E  V  V  A  *  N  T  N  L  D  T  I  F  F  V  T  *  M  S  I  Y  K  K  I  L  F  K  *  I  L  Y  S  R  N  C  I  *  Y  I  A  C  L  V  H  T  C  F  S  Y  I  F  V  Y  V  S  V  D  L  I  T  L  Y  I  L  Y  V  M  Y  N  E  *  Y  T  K  S  *  *  W  L  *  Q  I  V  Y  L  K  A  H  Y  Y  F  Y  F  C  I  Y  I  H  K  V  I  G  L  S  Y  T  D  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87069" stop="87150"/>
                    <exon start="87232" stop="87464"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNLLFVLIRSQISHRMNESSSTMRITRGSMVKSKQVQHEQTMEELRSKKKYDPTAVQEVINNAKARGIKIVQGGRKRKIVNIDSEENVCEVDGSEEHHNHEVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="104247" PGL_stop="98539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104247" e_stop="103575"/>
            <exon e_start="101779" e_stop="101615"/>
            <exon e_start="101212" e_stop="101075"/>
            <exon e_start="100982" e_stop="100831"/>
            <exon e_start="100597" e_stop="100489"/>
            <exon e_start="100140" e_stop="100042"/>
            <exon e_start="99899" e_stop="99834"/>
            <exon e_start="99261" e_stop="99154"/>
            <exon e_start="98975" e_stop="98539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.908" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="104247" e_stop="103575" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103574" i_stop="101780" i_length="1795"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101779" e_stop="101615" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.991">
            <gDNA_intron_boundary i_start="101614" i_stop="101213" i_length="402"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101212" e_stop="101075" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101074" i_stop="100983" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100982" e_stop="100831" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.963">
            <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100597" e_stop="100489" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100140" e_stop="100042" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99899" e_stop="99834" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99261" e_stop="99154" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="98975" e_stop="98539" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104247" stop="103793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104244" stop="103575"/>
              <exon start="101779" stop="101662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104118" stop="103579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104101" stop="103575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103832" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100831"/>
              <exon start="100597" stop="100530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103832" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103832" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103832" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103832" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103809" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103740" stop="103575"/>
              <exon start="101779" stop="101615"/>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101212" stop="101075"/>
              <exon start="100982" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100965" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100931" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100848" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100844" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98877" stop="98539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGCGCCACCTTCTTAACCTCACGCGCCGCCGCTCTCGAATCACTCCCTTCACCGTTCTCCCACCATGCATTACCTTCTCTTCTCGATCCTCCACCTCCATAACCAACCCCTCCCAATCCCCCTCCTTACCCTCCCCACCTCCCCCAGACGCCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCGAAGATCAAACGCCTCGAAGACCCGAACCCGAGATTCCTCAAGTACAATTCCCCCGATCCTACTGTAGCAGATCACACCTCAATCCTATCAGCACCGGAGACGAAAGTCACTACTCTTCCTAATGGTCTTCGTGTTGCTACGGAATCGAATTTGTCTTCACAGACAGCTACTGTTGGAGTTTGGATCGATGCTGGATCGCGATTCGAAACTGAGGAGAATAATGGCGTTGCTCATTTCCTTGAGCATATGATTTTTAAAGGAACTGAGAAGAGGCCAATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCTTATACTTCTAGGGAGCAAACTACTTATTTCGCCAAAGTTTTGGGATCTGATGTGCCTAAGGCAGTTGATATTCTTGGGGATATTTTGCAGAATTCTCTATTGGAGGAAGATAAGATTATTCGAGAGCGTAGTGTGATTCTTCGCGAAATGGAAGAG : GTGGAAAAACAACCCGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAATACACTCCATTGGGTAGAACTATTCTTGGACCTGCTCAGAACATTGAGAAAATGACAAGAGCTCATATACAAGATTACATTTCAACCCACTATGGTGCTCATAGAATG : GTAATTTCTGCTGCCGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCTAGTGAAGAAACATTTTACAAAACTATCATCTAATCCTATTACCACTTCCCAATTGGTGTCAGAAGAGCCAGCAATATTTACAGGTTCAGAG : ATACGTATCATTGATGATGATCTGCCTCTCGCTCAATTTGCTGTTGCATTTAGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG : TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG : CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG : CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG : TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG : GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAATTCATCTTCTTTTCCCAGTCGTAATCGTGACATTGGGCATTATACCACACATGGTCTACAAAACACTTTTGTCAATAAAATGAGCGACAAATTTTGTTGATCACTTTTGTTTTTTGTACATGGTGTTCATGTCAAGGAGAATACATTACTTGCTTCTGCCTTTGGCTGTCGATTCAGTCAGCATAAAGTTGCATCTCTTTCTTCTGCAATATATTTCGAAAATTGCATCAACTATTTTCCCTGTATTAGCATTCTTTGGGTAAAATATACCATTTGTGGTACTGGCTTGTTATTTATACACATACTTAACATCTCTCTCTCT</gDNA_template>
            <first_frame> H  A  P  P  S  *  P  H  A  P  P  L  S  N  H  S  L  H  R  S  P  T  M  H  Y  L  L  F  S  I  L  H  L  H  N  Q  P  L  P  I  P  L  L  T  L  P  T  S  P  R  R  H  D  L  R  S  L  S  *  T  S  Q  I  E  D  Q  T  P  R  R  P  E  P  E  I  P  Q  V  Q  F  P  R  S  Y  C  S  R  S  H  L  N  P  I  S  T  G  D  E  S  H  Y  S  S  *  W  S  S  C  C  Y  G  I  E  F  V  F  T  D  S  Y  C  W  S  L  D  R  C  W  I  A  I  R  N  *  G  E  *  W  R  C  S  F  P  *  A  Y  D  F  *  R  N  *  E  E  A  N  *  G  I  G  R  G  N  *  E  Y  G  R  A  F  E  C  L  Y  F  *  G  A  N  Y  L  F  R  Q  S  F  G  I  *  C  A  *  G  S  *  Y  S  W  G  Y  F  A  E  F  S  I  G  G  R  *  D  Y  S  R  A  *  C  D  S  S  R  N  G  R   : G  G  K  T  T  R  G  S  H  L  *  P  V  T  Y  Y  C  I  P  I  H  S  I  G  *  N  Y  S  W  T  C  S  E  H  *  E  N  D  K  S  S  Y  T  R  L  H  F  N  P  L  W  C  S  *  N   : G  N  F  C  C  R  S  C  E  A  *  R  S  C  *  A  S  E  E  T  F  Y  K  T  I  I  *  S  Y  Y  H  F  P  I  G  V  R  R  A  S  N  I  Y  R  F  R   : D  T  Y  H  *  *  *  S  A  S  R  S  I  C  C  C  I  *  W  S  V  M  D  R  P  *  F  H  S  F  D  G  H  A  T  N  A  R  I  M  E  Q  K  F  R  R  R  K  A  H  G  :  F  R  A  C  S  E  G  G  H  Q  *  A  S  *  K  C  D  G  F  *  H  Q  L  *  R  Y  R  A  V  W  C  L  C  *  S  *   : A  *  L  P  E  *  L  G  L  C  H  H  E  W  Y  M  Q  V  K  L  Q  S  V  *  C  *  C  G  S  R  T  *  S   : A  E  I  F  F  D  A  P  H  *  W  I  R  P  Y  C  *  R  H  W  T  A   : V  N  H  I  W  P  Q  N  S  I  C  *  V  I  F  Q  N  *  Q  C  R  C  W  N  D  Q  A  S  C  K  S  F  Y  F  *  Q   : G  C  C  N  I  S  *  G  T  N  S  R  F  A  *  L  Q  L  V  Q  T  Q  D  I  L  A  A  V  L  D  C  *  F  F  P  D  D  L  N  S  S  S  F  P  S  R  N  R  D  I  G  H  Y  T  T  H  G  L  Q  N  T  F  V  N  K  M  S  D  K  F  C  *  S  L  L  F  F  V  H  G  V  H  V  K  E  N  T  L  L  A  S  A  F  G  C  R  F  S  Q  H  K  V  A  S  L  S  S  A  I  Y  F  E  N  C  I  N  Y  F  P  C  I  S  I  L  W  V  K  Y  T  I  C  G  T  G  L  L  F  I  H  I  L  N  I  S  L  S </first_frame>
            <second_frame>  T  R  H  L  L  N  L  T  R  R  R  S  R  I  T  P  F  T  V  L  P  P  C  I  T  F  S  S  R  S  S  T  S  I  T  N  P  S  Q  S  P  S  L  P  S  P  P  P  P  D  A  M  I  Y  D  R  L  A  E  Q  V  K  S  K  I  K  R  L  E  D  P  N  P  R  F  L  K  Y  N  S  P  D  P  T  V  A  D  H  T  S  I  L  S  A  P  E  T  K  V  T  T  L  P  N  G  L  R  V  A  T  E  S  N  L  S  S  Q  T  A  T  V  G  V  W  I  D  A  G  S  R  F  E  T  E  E  N  N  G  V  A  H  F  L  E  H  M  I  F  K  G  T  E  K  R  P  I  R  A  L  E  E  E  I  E  N  M  G  G  H  L  N  A  Y  T  S  R  E  Q  T  T  Y  F  A  K  V  L  G  S  D  V  P  K  A  V  D  I  L  G  D  I  L  Q  N  S  L  L  E  E  D  K  I  I  R  E  R  S  V  I  L  R  E  M  E  E  :  V  E  K  Q  P  E  E  V  I  F  D  Q  L  H  T  T  A  F  Q  Y  T  P  L  G  R  T  I  L  G  P  A  Q  N  I  E  K  M  T  R  A  H  I  Q  D  Y  I  S  T  H  Y  G  A  H  R  M  :  V  I  S  A  A  G  A  V  K  H  E  E  V  V  E  L  V  K  K  H  F  T  K  L  S  S  N  P  I  T  T  S  Q  L  V  S  E  E  P  A  I  F  T  G  S  E  :  I  R  I  I  D  D  D  L  P  L  A  Q  F  A  V  A  F  S  G  A  S  W  T  D  P  D  S  I  A  L  M  V  M  Q  Q  M  L  G  S  W  S  K  S  S  G  G  G  K  H  M  G :   S  E  L  V  Q  R  V  A  I  N  E  L  A  E  S  V  M  A  F  N  T  N  Y  K  D  T  G  L  F  G  V  Y  A  E  A  K  :  P  D  C  L  S  D  L  A  Y  V  I  M  N  G  I  C  K  L  S  Y  K  V  S  D  A  D  V  V  R  A  R  N  Q  :  L  K  S  S  L  M  L  H  I  D  G  S  G  P  T  A  E  D  I  G  R  Q  :  L  I  T  Y  G  R  R  I  P  Y  A  E  L  F  S  R  I  D  S  V  D  A  G  T  I  K  R  V  A  N  R  F  I  F  D  R  :  D  V  A  I  S  A  R  G  P  I  Q  D  L  P  D  Y  N  W  F  R  R  R  T  Y  W  L  R  Y  *  I  A  N  S  F  L  M  T  *  I  H  L  L  F  P  V  V  I  V  T  L  G  I  I  P  H  M  V  Y  K  T  L  L  S  I  K  *  A  T  N  F  V  D  H  F  C  F  L  Y  M  V  F  M  S  R  R  I  H  Y  L  L  L  P  L  A  V  D  S  V  S  I  K  L  H  L  F  L  L  Q  Y  I  S  K  I  A  S  T  I  F  P  V  L  A  F  F  G  *  N  I  P  F  V  V  L  A  C  Y  L  Y  T  Y  L  T  S  L  S   </second_frame>
            <third_frame>   R  A  T  F  L  T  S  R  A  A  A  L  E  S  L  P  S  P  F  S  H  H  A  L  P  S  L  L  D  P  P  P  P  *  P  T  P  P  N  P  P  P  Y  P  P  H  L  P  Q  T  P  *  S  T  I  A  *  L  N  K  S  N  R  R  S  N  A  S  K  T  R  T  R  D  S  S  S  T  I  P  P  I  L  L  *  Q  I  T  P  Q  S  Y  Q  H  R  R  R  K  S  L  L  F  L  M  V  F  V  L  L  R  N  R  I  C  L  H  R  Q  L  L  L  E  F  G  S  M  L  D  R  D  S  K  L  R  R  I  M  A  L  L  I  S  L  S  I  *  F  L  K  E  L  R  R  G  Q  L  G  H  W  K  R  K  L  R  I  W  E  G  I  *  M  L  I  L  L  G  S  K  L  L  I  S  P  K  F  W  D  L  M  C  L  R  Q  L  I  F  L  G  I  F  C  R  I  L  Y  W  R  K  I  R  L  F  E  S  V  V  *  F  F  A  K  W  K  R :   W  K  N  N  P  R  K  S  S  L  T  S  Y  I  L  L  H  S  N  T  L  H  W  V  E  L  F  L  D  L  L  R  T  L  R  K  *  Q  E  L  I  Y  K  I  T  F  Q  P  T  M  V  L  I  E  W :   *  F  L  L  P  E  L  *  S  M  K  K  L  L  S  *  *  R  N  I  L  Q  N  Y  H  L  I  L  L  P  L  P  N  W  C  Q  K  S  Q  Q  Y  L  Q  V  Q  R :   Y  V  S  L  M  M  I  C  L  S  L  N  L  L  L  H  L  V  E  R  H  G  Q  T  L  I  P  *  L  *  W  S  C  N  K  C  S  D  H  G  A  K  V  Q  E  E  E  S  T  W   : V  Q  S  L  F  R  G  W  P  S  M  S  *  L  K  V  *  W  L  L  T  P  T  I  K  I  Q  G  C  L  V  S  M  L  K  L  S :   L  I  A  *  V  T  W  L  M  S  S  *  M  V  Y  A  S  *  V  T  K  C  L  M  L  M  W  F  A  H  V  I  S :   *  N  L  L  *  C  S  T  L  M  D  Q  A  L  L  L  K  T  L  D  G  S :   *  S  H  M  A  A  E  F  H  M  L  S  Y  F  P  E  L  T  V  S  M  L  E  R  S  S  E  L  Q  I  V  L  F  L  T  G :   M  L  Q  Y  Q  L  G  D  Q  F  K  I  C  L  I  T  I  G  S  D  A  G  H  T  G  C  G  T  R  L  L  I  L  S  *  *  L  K  F  I  F  F  S  Q  S  *  S  *  H  W  A  L  Y  H  T  W  S  T  K  H  F  C  Q  *  N  E  R  Q  I  L  L  I  T  F  V  F  C  T  W  C  S  C  Q  G  E  Y  I  T  C  F  C  L  W  L  S  I  Q  S  A  *  S  C  I  S  F  F  C  N  I  F  R  K  L  H  Q  L  F  S  L  Y  *  H  S  L  G  K  I  Y  H  L  W  Y  W  L  V  I  Y  T  H  T  *  H  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104246" stop="103575"/>
                    <exon start="101779" stop="101615"/>
                    <exon start="101212" stop="101075"/>
                    <exon start="100982" stop="100831"/>
                    <exon start="100597" stop="100489"/>
                    <exon start="100140" stop="100042"/>
                    <exon start="99899" stop="99834"/>
                    <exon start="99261" stop="99154"/>
                    <exon start="98975" stop="98889"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRHLLNLTRRRSRITPFTVLPPCITFSSRSSTSITNPSQSPSLPSPPPPDAMIYDRLAEQVKSKIKRLEDPNPRFLKYNSPDPTVADHTSILSAPETKVTTLPNGLRVATESNLSSQTATVGVWIDAGSRFETEENNGVAHFLEHMIFKGTEKRPIRALEEEIENMGGHLNAYTSREQTTYFAKVLGSDVPKAVDILGDILQNSLLEEDKIIRERSVILREMEEVEKQPEEVIFDQLHTTAFQYTPLGRTILGPAQNIEKMTRAHIQDYISTHYGAHRMVISAAGAVKHEEVVELVKKHFTKLSSNPITTSQLVSEEPAIFTGSEIRIIDDDLPLAQFAVAFSGASWTDPDSIALMVMQQMLGSWSKSSGGGKHMGSELVQRVAINELAESVMAFNTNYKDTGLFGVYAEAKPDCLSDLAYVIMNGICKLSYKVSDADVVRARNQLKSSLMLHIDGSGPTAEDIGRQLITYGRRIPYAELFSRIDSVDAGTIKRVANRFIFDRDVAISARGPIQDLPDYNWFRRRTYWLRY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98760" stop="98539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLFFVHGVHVKENTLLASAFGCRFSQHKVASLSSAIYFENCINYFPCISILWVKYTICGTGLLFIHILNISLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 105 chains have been computed
$ 
$ memory statistics:
$ 222616 bytes spliced alignments in total
$ 59 spliced alignments have been stored
$ 3773 bytes was the average size of a spliced alignment
$ 23040 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1645 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 120 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:33:58
-->
