<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:40:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6600-2" ref_strand="+" ref_description="SGN-M6600-2 C2_At1g13820-2 [cosii_markers]">
      <seq>taaaaaaaatgctgaatatattatattcttggaaaagttgaattttagcagaaaaatccagtagtactctgcgtctgctatgttaacatctttctcagccggagctggtggagctacgccgccggcattaaccaatttgaaatggttgaattcgaggcgtttaaagatctgggctggctgtgattttccggattttcttcctaaacaagttgagaaaatcaaagacccttatgctagaaagttggcttcacgaattgagagaataccagtaaacttttcaaagggttgtgtcatgagtagttgtgtgaagccaaaagaactgaaagaggccaatccagtcgtacttctccatggttttgatagcacatgtttagagtggaggtacacgcttcctttgcttgaggaggctgggttggaaatctgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacctacatcaagaggccaatggtacttgtcggaccgagtcttggatctgctgttgctattgacttctccgttcactatccagaagctgtggataggctggttttaatagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5373" stop="8570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5699" g_stop="5931" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="268" r_length="233" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5932" i_stop="6925" i_length="994">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6926" g_stop="7020" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="363" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7021" i_stop="7098" i_length="78">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7099" g_stop="7196" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="461" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7197" i_stop="7312" i_length="116">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7313" g_stop="7362" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="511" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7363" i_stop="8031" i_length="669">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8032" g_stop="8127" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="607" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8128" i_stop="8242" i_length="115">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8243" g_stop="8270" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="635" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-M6600-2" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6600-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5699" e_stop="5931"/>
          <exon e_start="6926" e_stop="7020"/>
          <exon e_start="7099" e_stop="7196"/>
          <exon e_start="7313" e_stop="7362"/>
          <exon e_start="8032" e_stop="8127"/>
          <exon e_start="8243" e_stop="8270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAATTTAGCAGAAAAATCCAGTACTACTCTGCGTCTGCAATGCTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAACGATCTGGGCTGGCTGTGATTTTCCGGAATTTCTACCTAAACAAGTTGAAAATATCAAAGACCCGTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCAGTACGTTTTTTCCACTCTCTTTTTAAAATGTGTGTATTTTTTCTTTTAGTGGGTGTGAAGCTGATTTCCGTTGTTTTCGATGTGTTTGAAGTATTGGAATCAATGGGTGTGAAATCTGTACTTTTTGTTGAAATGGGTTTGTGCTGATTGGTTAAAAAATCGTTTCTTTTGATAAATTTAGGATCTAATATCAGTAGATTAAGACTTGCATCATGCATGCAAGATCTTATGGATGGGGTAAAGGTTGGGGTAATGTTTGTTTTCATCCTATACTGGCCGGACTTTATTTGCGGAATTACACTGAGTTTGTTGCTGTTGTTGGTGGTGGTGGTGGCAGCGGTGATCGTGGTCGTATCACCTTGTGTGCACGGGGTACTTACTACCTCTCGCGTGTGTATTGGATAATTTTGTGACTTTGGCAAATGGGATGTTATGATGTCTATGCCTGAGGATGTCAGACATGGATGGGGTGTGTGTTGGAGGACAAGGAGGAGTGGATAACCACTTATGGAACTCGTTTTTGTAGTGAAAATATTTTCCTAAAATTTTAACCAACCAAATATGGAAAATTGGAAAAGGGAAAACATGTGAAAGTTTTACAGATATGACAGGAAGAAGTGTTGGATGTTGGGAAGGAGAGAATACTTTCTATTTGGTCATGGTTGTTTAGGAATACGGCAGATGTGCATCCAAGATTTTGAGACTGGTATGTTTACTACTGCACCTACTTGTTTGACAATGCATGGGGAATTAATATGAAGATACATTGTTAGAATCTTTTCGGATATATCACACACAATAACTAGATGAATGCCGCGGGGGTGGATATTACCATTGCTGTGATGAAGGTGTTTGCCCACGATCCACAAGTTAATCAGTCTTCTTGTATGAAATATGTATTTTCTTTTTAATCGTAAACTCAGGGATCTAAATATTTTGCTTCCCCTGTTTTGTATTGATTTATCTAAATATCTGCTTCTCCTGGTTCATTTAGGTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACAGAAAGAGGCCAATCCAGTTGTACTTCTCCATGGTTTTGATAGGTATGCCTCGTGCTATCCTAATAGTATTGATCACTTTCTCTTGCTGTGTTCTGCTGTTCATTATACCTCATTGTTCAGCACATGTTTAGAGTGGAGGTACACGCTTCCATTGCTTGAGGAGGCTGGTTTGGAGACCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATCTAGGTATATTGTTTTGTTCAAGCACTTTCGCAATATTCATTTTTCAAAAAGATTTTGCGAACAAAGACTCAGGATTTGCTCATAGTTTCATCCCTTTATGTTTTCTTGTGATTTTTAAGGAAGGCTTCCTTCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACCTACTGATTTTGTCGAATATATGTTCTAATCTAGTGTTCAAAACAGCCTCTCTACCCCACTTAGGTAGGGGTGAGGTCTGTGGTGCCCCTTACCCTCACCCTCCCCAGACCCCAATTATAGGACCACATTGGGTATGTTGTTGTATTTGTTCTAATCCAGTGCATACAAACTTGAAAGGCTGGAATTAGTCTCTTTTATAGCAAATCCTAATAAATGTAAAAGTAGCTTATACACGAGTAAGCCACAAGTGGTGCTTGGGGAGGGTGGTGTGTACACAGCCTTACCTCTACGGTAGAGAAGAAGTAGCCTATATAAGTACAGAATTAAGTTAACAGTCACATTTAATTAGCTTGAGTAGTGAGGCTTAGTAAATTGGACTTAATATGCAGGGTTAGGTTCTACAATTACACTTTGTTCAGTAGTATAATATGATATCACAGTTATGTAGCATCATAGAGGAGCTCTCTTACTCGATAGAGACCCAACTTAGGAATGATGGTGTAATGTTTACTTCGATTAAGTTTATCTGGGAAATAAGACCCAACTTATGAATAATGGTGTTAACGGTTCTTCTTTTATCTTTTCTTTTTTTCAAAAAAAAAAAAAAAAGAAAAAAAGAACCGTTGACACGTTTTCTAACTTTTCACTCTCATTTTTCTTTCAGCTGTGGTCTACCTACATTAAGAGGCCAATGGTGCTTGTCGGTCCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCTGTCCACTATCCAGAAGCTGTAAGTATGTTCAATGACTGTGAATTCCTATCCAGATTTTATAGATTTGTTTCTACTTTCTACTATTAAGGAGGAATCATTTTATTGCTAACTCCGAAGTACTTATACTTCATAGGTGGATAGGCTGGTTTTAATAGATGCAA</genome_strand>
        <mrna_strand>AGTTGAATTTTAGCAGAAAAATCCAGTAGTACTCTGCGTCTGCTATGTTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAAAGATCTGGGCTGGCTGTGATTTTCCGGATTTTCTTCCTAAACAAGTTGAGAAAATCAAAGACCCTTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACTGAAAGAGGCCAATCCAGTCGTACTTCTCCATGGTTTTGATAG..............................................................................CACATGTTTAGAGTGGAGGTACACGCTTCCTTTGCTTGAGGAGGCTGGGTTGGAAATCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG....................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCTACATCAAGAGGCCAATGGTACTTGTCGGACCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCCGTTCACTATCCAGAAGCT...................................................................................................................GTGGATAGGCTGGTTTTAATAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6600" ref_strand="+" ref_description="SGN-M6600 C2_At1g13820 [cosii_markers]">
      <seq>aaaaaccggtggccaccgtgcacggctgagcgactgagaaacaaagaatatgctgacatttttctcagccggaaccggtggtgctcctccgccagcatttctactaactggaaccaatttgaaatgctcttattcgaggcgtttaacgatcagggcaggtgaatttccggattttcttcctatacaaatcgagaatatcaaagacccttatgctagaaagctggcttcacgaattgagagaataccagtaaacttatcgaagggatgcatcatgagtagttgtgtgaagccaaaagaacagacagaggccaatccagttgtgcttctccatggttttgatagctcatgtttagagtggaggtacactcttccaatgcttgaggatgctggattggagacatgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacccacatcaagaagccaatggtacttgttggacctagtcttggatctgctgttgctattgacttttctgttaaatatccagaagctgtaagttcattcggtaacttaggatccctgttcagatgttgtaaattactttcctgtatgaagaaggtattattttatgcttgcttcaagtagctttactttatcaggttgataggctggttttaattgatgcaagtgtttacgcggaaggtacaggaaaccttgcaaccttacccaaagcagtagcttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17371" stop="20517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17671" g_stop="17917" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19040" g_stop="19134" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="342" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19214" g_stop="19311" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19426" g_stop="19475" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="490" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19928" g_stop="20217" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="780" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-M6600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17671" e_stop="17917"/>
          <exon e_start="19040" e_stop="19134"/>
          <exon e_start="19214" e_stop="19311"/>
          <exon e_start="19426" e_stop="19475"/>
          <exon e_start="19928" e_stop="20217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCAGTAAGTTTTTTATTGCTGCTGTCTTTTTTGGGGTTAATTTCTAGATAGTTTTCTGTGTTTTCTCAAGCAAGTAGTAGAATTTTTTAAGTGCATTAAGAATTGTGATTCAATTGGGGGAAAATTCTCTACTTTTTATGAAATGGGTTCTGTTCTGATGAGTAAAGTTTTGTTCTTTTGGATTATATTATCACAGAGGTAGAAAAATCGAAATAAGGAAGTAAAGAATGTTTTTGAATCTTGTGGTTTCAAGCTAAAAATATGCTGAATGTACAAAAAAAAATGTCACTTAATCTTATAAAGTTGAAATTAAAGTTTTCATATTCTTTTTGAAACGGAAGTAGAAATTTAGAACCTAAAATCAGTAGCACAAGATTTGTGCATGGATGCAGGTACTCATTGCAGCTATAGGGGTTACCTTTATGTCTCTGCATGTCGATGTTAGATATGGATTAGGTTACAAGGAACGATAGAACTCTTATTTTTACTTTTTTATCTTCTTAAATTGTTCTCATTCCAGCTCATTTTATGACTGTATTTAATTGAACCTAGAATCTGAAGATGCTAATTTGACTTAAATATTTTTTGGCGGTAGTGCAAGAAGATAATTCAGTAATTGTTAAAAAGTTGTTTTGATTTAGGTAACATCCCAGTCTGTAATTTAGATAGCTCAATGAACTTTATTTCTTGAAAGCAGTATAGAAGTGGCATGGTATCAAACATTTCAGGACATCCCTAAAATGGAAAGAGTATCATATATTTGGGATATCCATGATTTTAAGACTTTGGGTGCAGACTACTACTGGACACTACTTTGTGATGATGTGTGCTGACTTAGAATGAGTGTTATCTCTTATAAGTATTCCCCTGTTCACACACACAGTTGGAACAAAATGGAGCGGGTGTGAGTGCACCCATTGCGGTAGTGTACCCGCTGTCATAGAGGTGTCCACTCATCATATGCAACTTAATCATTCTTTTCTTTTATGTATTCTGTTCTTATAATCCTAACAAAGTCACATATCTAGATATATTGCACTGGATCGAATCAATTAACTCTTTCTTTATAAAGTTCTGGGTACTGCCTTTGTTTGATGGTCCAGCTTCATTGCTGGTTCATTTTAGGTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAGGTGTGCCTCATGCTACGCTATGAATTTTGATCACTTTCTCTTGCCATGCTCCTGTTGTTCATTATGCCTCATTGTTCAGCTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAGGTATGTTATATCTTGTTATAGCTTTTTCTCAGTTCTTTATTTTTCAAAAAGATTCTGCAAACAAAAACGAAGACTTGCTCATGGTTTGTATTTTTTGTTTCCTGTGATATTAAGGAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACGTACTGATTCCGGAATATATGTTCTAACCTAGTGCATACGAACTTTGAAAGGTTGGAATTAGTATCTTTCAACTTTCATTACACATTCTGATAAATGTGAAGTTACATCTAAGTTCAAAATTAAGGTAAATCTCTCAATCTTTTTTCCTAGTAGTGTAACTATAATACTTATGCAGGGTCATGTACATAGTTATGCCTCATTGTGCATTGTGCAGTGGTATGATATTACAGTTATGAAGCATTAAAAAGGGGCATCCTTGCTTACTTGGCACAGGTCTACGCTTAAAAATATTGAAGTAGTGTTTCTTTGTCTAGCTGTCTGATAAGGGCCAGGCATATCTTCCTGGCCTGGCCTTAAGACCATGTTGAACATTTACTGGGATATTACATTTCTTAAAAAAAATTCAGCTTACATGTTTTGAAATTCGCTGTCTTGTTTGTCTTTCAGCTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCT</genome_strand>
        <mrna_strand>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG...............................................................................CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG..................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6710-2" ref_strand="+" ref_description="SGN-M6710-2 C2_At1g26460-2 [cosii_markers]">
      <seq>aggaaaagcttaaaaacacttacaatggcgatcctgattcgatcacgaccgttgatcagaaaatttacaaatttcaaatcaatcacaaccgttcctttcctctcacaagaacctcaactcgccggaactccaccggaaaacactaccccactacccccaaatccatcctccggtagtccactctataatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcctccgttgtacccttggggttcttacgccaatcgccagctgcgcgtattcaggcaatgtcagaatcacttgatggggaaggtttgatgaatctgtttgctgattgggtgacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttggtattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32251" stop="33430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32548" g_stop="33130" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-M6710-2" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6710-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32548" e_stop="33130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAGCTTAAAAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTG</genome_strand>
        <mrna_strand>AGGAAAAGCTTAAAAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAAAATTTACAAATTTCAAATCAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGAACTCCACCGGAAAACACTACCCCACTACCCCCAAATCCATCCTCCGGTAGTCCACTCTATAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCCTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCAGCTGCGCGTATTCAGGCAATGTCAGAATCACTTGATGGGGAAGGTTTGATGAATCTGTTTGCTGATTGGGTGACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGTATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6710" ref_strand="+" ref_description="SGN-M6710 C2_At1g26460 [cosii_markers]">
      <seq>aaacacttacaatggcgatcctgattcgatcacgaccgttgatcagaacattaacaaatttcaaaacaatcacaaccgttcctttcctctcacaagaacctcaactcgccgggactccgccggagaacactaccccactacccccgaatccatcctccggtagcccactctacaatgaaaactggagatccccatttgcagctacctcacaatctgtatcttcttccgttgtacccttggggttcttacgccaatcgcctgctgcgcgtatgcaggcaatgtcggaatcacttgatgtggaaggtttaatgaatctgtttgctgattgggtaacgacgcagaggtgggaggatatgaaacaggtgtttgagctttggattaggtcgttggatagaaatgggaaaccgaataagcctgatgcgaatctgtttaattattatttgagagctaatttgatgatgggtgctactgctgatgatttgttgggattagctagtcaaatggaggagtatggacttgttgctaatactgcttcgcataatttgatcttgaaagctatgtttcaatctggtgaaccattgtcatgggctgataaatctgtcaaattgctcgaaaggatgattgcaactggagttgagtataaagaagctttgcctgatgaagagtcatatgatttggttactggcttgctatttaaagcaaaccttattgatgatgcgttgaaatatattgattcagccttaaaatctgggtataagctatccatgaatgtatttaatgagtgtgtgcgaagctgtatctacagcaacaggctggatgcattggtgtcaataatagagaaatgcaagaaaacagatcagaacaaaggcctgttgccgccttggaacatgtgcacacaccttgcagatagtgcattacaagcagataatagtgaactagcttttacttccttggagttctttgtgaaatggattgttagaggtgagactgtgaagccccctgttttactcagtgtaggcgaaggactgcttgtggctgcacttggaactgctggtagaacatacaatgtgaaactcctgaatggtgcttgggaagtccttaagcgctcactacggcaaatgaggatccctaaccctgagtctttccttgcaaagatgtatgcccatgcatcattgggacaattgcagaatgcttttgctaccctgcatgagtttgagaaagcttatgctagttctaaagatgagagtgcagaagaactattttctccctttacctctttgaatccactggctgttgcttgctgcaggaatggttttgtcaccctggactctgtttactatcagctggagaatttgagccgagcagacccccctttcaagtctcttgctgcactcaattgtgtaattttaggctgtgccaatatatgggatattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="+" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32261" stop="36239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32561" g_stop="33176" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33177" i_stop="34881" i_length="1705">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34882" g_stop="35113" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="848" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35114" i_stop="35208" i_length="95">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35209" g_stop="35691" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="1331" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35834" g_stop="35939" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1332" r_stop="1437" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="+" ref_id="SGN-M6710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32561" e_stop="33176"/>
          <exon e_start="34882" e_stop="35113"/>
          <exon e_start="35209" e_stop="35691"/>
          <exon e_start="35834" e_stop="35939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAGGTTTGTATTTCGAGCTAATCACTTAGCTTTGAATATATTTGTTTGTACAATATAGTCATATACGGATAGGATGTATGCAAACCTTAAACTCTACCTTTGTGGGGTAGCTGTTTCATATAGAACCTCCGCTCAAAAGAAATAACAAATGTATAGAACAAGTGTGATAACATCTATTATGCATTTAAGTTATGTACACGGGTAGTCTTTCAGTATAGGGTTGTTGCTTTACTTTTAGGTTATGGATCCATGCTTATTATAAACTAGTTGTATGAAGTGATAAGCCGGAGGAAGGTGAGGATGACATCTAACCTGGTATAGAAATTAAAACTTTGTATATAACTGTGGATATCCCTTTATTTGCTTTATTGTTCATTTATATGAAATCATTGTTAGCCTTAATTTTATTTTCTAAAAGAGGAGACTGTTAGTTCATTTATATGAAATTGTTGTTGGCCTTAATTATATTTTCTAAAGTTGGAGACTGTTAGTTGAGATTAGTATTGGGCTGAAAAGTTCGTTGCAGTACAAGAAACACAACACAGAAAAACTTAAGACTCAAATTTAGTGAGTTGAGAGTTTTAAGACCTTTATATTCATAGATTAGAAATAGAGAATTTATAAGGCATGTATATTGACAAAAAGATACTATCTTCATTTGTTGTGAAATGAACATTTGCGGCCCTTTCGGTTGGCTGCTAGGGTGATCCAGGATTATGGTATGGTATTTATTTGGAAGGTTTCATATTAGTCAGAAAATGTTAATGACGTTTATTCATATTTGTGTACAGTATAAACACACTAAGAAGCTTTGCAGATTTTACCAGTGATATAGCCGCCAGCTGGTTGCAATTGACAAATCGAAGTTCTCTATTTAGTGCCTCTTTGGATTGACTTACTCTAGGTGCTTTTAAGCCAAAATAGCTTTTAAGTTCTTTTCAAAAGTTTCAGAGGGATTGACAAAATTCAGAGTAACTTTCAAATTTAAGTATTTGAGTCAAAAGCAATAAATTGACTTATTTTAGCTTTTCAACTGTTTTGCTTTGATTAATCTATTAACTTCTTCTTATCACAAATATTTATTTTTCATCCAATATAAATTAAGCTTCAGCATTTGAAATTTAAAACTACTTAATTAAGCCAATGCAAACACATTCTAAGTAAAATAGGAGTACTTATAAGCACTTGTTTTTAAGCCAAAATAACTAAAATAAGCCAAAAGCCATATCTAACTCATGGCTTTTGGCTTATCAGTCATAAGTCAATCCAAACAGGCTCTTAGCCTTACCAAAACAATGGAACATTCAAAATAACATAGTGGGGAACTGCCTCTAAAATGAACTGAGCGAGGCGTGCTAAAACTATTCCAGTTGCAGCAGAAGTCCAAACTCCTGTCTGTTAGTTACTACTGGATTCATAGCTTTATTATTTGGGTTTTATTTTCCTTTAGTTTAGTCTTGCTGCAAACAAAATTTTGCCATATGTCTTTGCTCCTCCTTTTCCATTCTTTCAGCTTGCTTATTCTTGAATTCTCTGGCTCCTTTTGATTTAGTGTGGATAGCAAGTTTACTAAGTGACAAGGAATCTCGTGGAGTTTATTGAGCTCGTCTTGATTGTGACAGTTCACTATGTGTTTTCATCATGCATGCATGTACTCTGTCATGCATTGGTGATATTTGATAGATCTCATGTGCTATACTTATGCCAGGATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAGGTTTGTATCCCTTCGATGAGATCATCCGAACCATGAAACTTTCTATTATTTGAAATATATTTTAGTCTTGATACTGCTGTTTTGGGTATTCCCAGAAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCTGTATGTTCTCTTTCTCTTCCAACTAAGAATTCTGAATATCTCACAGCTTAGCACTTTGCTGTACCTGCTTAAGTGTGTTGGATGTTCTCTAACTGGGTCACTTCTTAAACTTAGTATTGCCACTGACTTCCAAATATTCCAGGTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATC</genome_strand>
        <mrna_strand>AAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAG...............................................................................................AAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT..............................................................................................................................................GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6711" ref_strand="+" ref_description="SGN-M6711 C2_At1g26520 [cosii_markers]">
      <seq>tgaagacgctgagcatggagaattccgacgaagaaccgccgctcgccgtcgaaatcaacgacgccgtcaactctaatcaactgacaaagagctcaaagcttccgccggttggcgtcaccgtcatcaccggctatctcggttccggaaaatccactttgatcaattacatattgaaaactcaacatggcaagaaaatagcagtgatacttaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgtgaagcatagtttggttcaagcattggagcaacttgttcagagaaaagagaggcttgatcatatattgctagagactactggtttggcaaaccctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccataatcactgttgttgatgcaaagaaccttcggtatcagctaaaaccaaatcctgactcctcttcatttcctgaagcttatttacaaatagcttttgcggatgttatcattcttaacaaggtagatctaatttctctagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86807" stop="84425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86507" g_stop="86353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="373" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="488" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="84959" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="578" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84769" g_stop="84725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="623" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-M6711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86507" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="84959"/>
          <exon e_start="84769" e_stop="84725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCGGTAATTGATATGTTAGTTTCTCCATTCAATCATCTCAGGTTTCTAATTAGGCTTTCAATCTGTTTTTTCAACTTTCCAGTGGTTGTATTCCCATTCTTATAGGTGCTAACTAGGACTGTACTTCATATAATAGGTCTGGATTATGGATGAAATCATGTCTAACTCTTATTTGTGAACTGTTGTGTGTAGGATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGAC</genome_strand>
        <mrna_strand>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT.............................................................................................TTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG.............................................................................................................................................................................................GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6711-2" ref_strand="+" ref_description="SGN-M6711-2 C2_At1g26520-2 [cosii_markers]">
      <seq>aggattccgacgaagaaccgccgctcgccgtcgaaatcaacgacgccgctaactctaatcaacttacggaaagctcagagcttcctccggtcggtatcaccgtcatcaccggctatctcggttccggaaaatccaccttgatcaattatatattgaaagcgcaacatgggaagaaaatagcagtgatactgaatgagtttggtgaggaattaggagttgagagagcaatgataaatgaaggggaagaaggtgatcttgtggaggaatgggtagagcttgcaaatggatgtatttgctgtactgtgaagcatagtttggttcaagcattggagcagcttgttcagagaaaagagagacttgatcatatattgctagagactactggtttggcaaaccctgcacctcttgcatctgtgctttggttggatgatcagctggaatcagatgttaggcttgactccattatcactgttgttgatgcaaagaaccttcggtatcagctaaaaccaaatcctgactcctcttcatttcctgaagcttatttacaaatagcttttgcggatgttatcattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86789" stop="84648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86489" g_stop="86353" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.816" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86259" g_stop="86042" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="355" r_length="218" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85488" g_stop="85374" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="470" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85048" g_stop="84959" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="560" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84769" g_stop="84754" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="576" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-M6711-2" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6711-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86489" e_stop="86353"/>
          <exon e_start="86259" e_stop="86042"/>
          <exon e_start="85488" e_stop="85374"/>
          <exon e_start="85048" e_stop="84959"/>
          <exon e_start="84769" e_stop="84754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACTGTAATTTATGCTTCTCCTCTCCTTATTCAGTTCATAATTAGGTTAGTTAGTTTGGAATTAAAGCGTAATAGTTAATTTTGTTGTTATTTTTAGTTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAGGTTAGAGTTTTTTAATGATTATTACTCACTCCATTTCAACTTGTTTGTTCTACTTCCATTGAAAAAGATGTCTTGTTCCTTTTTTGGCAGCTATTTAGTTTCAACTTTCCGCATGACATGATTAGGATCACAATAGTAAAGGGCATGTTGATATATCTTACATATCTTCAGTTTTTAGTTTAAGAACAAGATTCAAACTTTTTGTCAAGTCAAAACCTATTGTATATTGTATTGTCCTTTTAAATACAATGTTTGTTTCGATTATTTTGTAAAATTTATGTATCATATTTGTTGAATCTGTCGTATGTGACGATGAAATGTGTCATTTTGTGTAACCACCATTTGGTTTGATCACCTTATCTTTTTATCTTCATCTTGTACTTTCGTATTACTTAATAATCCTAGTACAAGTCTGTTTTTACAAGTGTGTTCTTTGAATAATCATTCCTTACATGTTAAGTTTGGAGTAAGGCAACGAAATTCTGTAATTATTTGCTGAAGTATTTCACCTTTTTCAAATGTAATGATGAGCAGTTATTTTGTTTGTTTGCAGGCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACTGTGAGTTTTGTGTTTTCAGAATTTTCCTCATTTTCTTTTACTATTCTGTGCATGGAGAAAAGAATTATATCTGTGAAGTGAAGCTGCTTAGAATTTGGTGTTCTATGGTTTCTCTTAGATATTGAGATTAAAAATTATTTCACTGGTTAGATGTGTATCTTAGGACTTGCTTATTAACTTCATTTACGAACTCATTCTGTTCTCTTATATGATTTAACTTCATATGCAACAGGTTGTTCTCATCGTTGCACTTCTTAAATCCTTGCCATTTTATTTTCCAGTTTTGCATAATGTTGGGTTTTGATTAGTTTTGCTTCTGTGACAGGTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCGGTAATTGATATGTTAGTTTCTCCATTCAATCATCTCAGGTTTCTAATTAGGCTTTCAATCTGTTTTTTCAACTTTCCAGTGGTTGTATTCCCATTCTTATAGGTGCTAACTAGGACTGTACTTCATATAATAGGTCTGGATTATGGATGAAATCATGTCTAACTCTTATTTGTGAACTGTTGTGTGTAGGATGTTATCATTCTTA</genome_strand>
        <mrna_strand>AGGATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGCTAACTCTAATCAACTTACGGAAAGCTCAGAGCTTCCTCCGGTCGGTATCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACC.............................................................................................TTGATCAATTATATATTGAAAGCGCAACATGGGAAGAAAATAGCAGTGATACTGAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAGCTTGTTCAGAGAAAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATTATCACT.....................................................................................................................................................................................................................................................................................................................................GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG.............................................................................................................................................................................................GATGTTATCATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2155" ref_strand="+" ref_description="SGN-M2155 T1640 [cos_markers]">
      <seq>agtggagcgtcatggacagaccctgattccatagttttgatggtcatgcaacaaatgctcggatcatggagcaaaagttcaggaggaggaaagcacatgggttcagagcttgttcagagggtggccatcaatgagctagctgaaagtgtgatggcttttaacaccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcctgagtgacttggcttatgtcatcatgaatggtatatgcaagttaagttacaaagtgtctgatgctgatgtggttcgcgcacgtaatcagctgaaatcttctttgatgctccacattgatggatcaggccctactgctgaagacattggacggcagttaatcacatatggccgcagaattccatatgctgagttattttccagaattgacagtgtcgatgctggaacgatcaagcgagttgcaaatcgttttatttttgacagggatgttgcaatatcagctaggggaccaattcaagatttgcctgattacaattggttcagacgcaggacatactggctgcggtactagattgctaattctttcctgatgacttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0079C22-2THDe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0079C22.1" temp_strand="-" temp_description="C05SLm0079C22.1  AC225040.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0079C22 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101231" stop="98561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100931" g_stop="100831" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100597" g_stop="100489" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="210" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="100042" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="309" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99899" g_stop="99834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="375" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99261" g_stop="99154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="483" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98975" g_stop="98861" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="598" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0079C22.1" gen_strand="-" ref_id="SGN-M2155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0079C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100931" e_stop="100831"/>
          <exon e_start="100597" e_stop="100489"/>
          <exon e_start="100140" e_stop="100042"/>
          <exon e_start="99899" e_stop="99834"/>
          <exon e_start="99261" e_stop="99154"/>
          <exon e_start="98975" e_stop="98861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGGGTTGGTCCTTTTCATTTGCTTAAATTACACAAAAGTTAATTTTTTTTTTATGAATCAAGAGAAGTTTTTGAGTACTACCAGCAGCCTAAAAGTGCCCCTTAGAGAAAAGGACAATAGGAGTATTATTTGTTGATTCGTAATGCTTCATTTATTTTGGTTGAGTTGTTCTTTTCTCCATAAAATAGAAAGTTACTGAATTTGCTATCTTTCATGGGTATATGATCTTTGAACAGTTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAGGTTAGAAGAAAATTTCCACTACCTTTGTTTAATCAAATCTCAACTACTTCAGTTTCATTAACTTAGTATTATGATGTGATTTGCTGTATAAGGTCTTGTGGTCACTAAACTTTTGTTATCATGGTTCATTTGTTCTCTTGTGAATTGACAACTAGGTCAGGCCATACAAAAGCAAATTGAAATGTAATTCCAACTTTTTCCGTATTAAAGAAAAATAACAATTTGAAATGTAAAAACTAGTGATTGACATCATATTCGGTAAGTGATTGATGCATTTCTGCAATCAATGTAAGCAATCTTTGCATTAGGACTGTGGCTTTACTCATCCTTGTTTTCTACTTGTTACAGCCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAGGTATTTGTTCACTCCCCAGTTATTCTTTTTCAAATGGAATAGCTGAGTGTTATTTGCCTCCATTTGATTCTAGGGACTTCTACTGTTGACTGCATGTCCTTTTAGCTGTATCAAGAACTTATATTTTCTTAATCTTCTGCAGCTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAGGTAAAATTACATAGAATATATTTATAACCAAAAACAATTATAGGAGCAAGTGTTTGGTTCCTTAGGTCTGGTACATTTTAGTCTCCTTGTTCCTAACTCCATCAAGCAAGGCTCTACTATCATCATAAAAATAATGTAAGATAAAATAAAGGCTCTGCTATAGAAGGAAAAAGAGGGAACATACGTCGGCAATGCCAACCAATAAGTAAAGAAGAAGAATCTTAGCGGAGGCAAAAGAAGCTAGGTAATTTCTTTTCATCTACCTAAACTTTGGTAGGAAGAGTTATCCGGTACCTGTCCTAACGGGAGGTAATATGTATTTGGTGGAATAGTCTAGGTGCACAAGTTTGTCCATGTCACTTTTCCTTTAAATAAATGGAACCTAGATGACTAGGTGGTAGGAGCATTGCATATAGTTAATACATTTCCTCTCGTCAGTATAGCAGATCGTGTTCTGTTTGCTGGATTCTTTGCTGTCAAATGGATTGCCGTGATTGCATTCTAGTTCCTTGACACCTCCCTTTATAATCACTGAATTTACTTACAGTTGAAAGTTTCTTTTTTTATTGCAGTTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGGGTAAGTCCCTAAGGCCTTCTTTACATCTACTTTTAGTCAATAACTATTTATATAGGCTATAAGTTGGTTATTTTATTAACACGCCATAAAACTATATGAATTACATCTTATATTTCCTGAACCACTACAAATACAAGAGGATTAAAACTATCTTTTTAATATGATTTTCCCTTTGTAGGATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAA</genome_strand>
        <mrna_strand>AGTGGAGCGTCATGGACAGACCCTGATTCCATAGTTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG.........................................................................................................................................................................................................................................TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG............................................................................................................................................................................................................................................................................................................................................................CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG..............................................................................................................................................CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG..................................................................................................................................................................................GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5699" PGL_stop="8270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5699" e_stop="5931"/>
            <exon e_start="6926" e_stop="7020"/>
            <exon e_start="7099" e_stop="7196"/>
            <exon e_start="7313" e_stop="7362"/>
            <exon e_start="8032" e_stop="8127"/>
            <exon e_start="8243" e_stop="8270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="0.979"/>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="0.949"/>
          <exon-intron don_prob="0.983" acc_prob="0.921" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.948"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="5699" e_stop="5931" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5932" i_stop="6925" i_length="994"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="6926" e_stop="7020" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="7021" i_stop="7098" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="7099" e_stop="7196" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="7197" i_stop="7312" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="7313" e_stop="7362" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.921">
            <gDNA_intron_boundary i_start="7363" i_stop="8031" i_length="669"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="8032" e_stop="8127" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="8128" i_stop="8242" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8243" e_stop="8270" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5699" stop="5931"/>
              <exon start="6926" stop="7020"/>
              <exon start="7099" stop="7196"/>
              <exon start="7313" stop="7362"/>
              <exon start="8032" stop="8127"/>
              <exon start="8243" stop="8270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6600-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTGAAATTTAGCAGAAAAATCCAGTACTACTCTGCGTCTGCAATGCTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAACGATCTGGGCTGGCTGTGATTTTCCGGAATTTCTACCTAAACAAGTTGAAAATATCAAAGACCCGTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACAGAAAGAGGCCAATCCAGTTGTACTTCTCCATGGTTTTGATAG : CACATGTTTAGAGTGGAGGTACACGCTTCCATTGCTTGAGGAGGCTGGTTTGGAGACCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATCTAG : GAAGGCTTCCTTCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCTACATTAAGAGGCCAATGGTGCTTGTCGGTCCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCTGTCCACTATCCAGAAGCT : GTGGATAGGCTGGTTTTAATAGATGCAA</gDNA_template>
            <first_frame> S  *  N  L  A  E  K  S  S  T  T  L  R  L  Q  C  *  H  L  S  Q  P  E  L  V  E  L  R  R  R  H  *  P  I  *  N  G  *  I  R  G  V  *  R  S  G  L  A  V  I  F  R  N  F  Y  L  N  K  L  K  I  S  K  T  R  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  F  Q  R  V  V  S  *  V  V  V  *  S  Q  K  N  R  K  R  P  I  Q  L  Y  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  R  F  H  C  L  R  R  L  V  W  R  P  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  L  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  L  R  G  Q  W  C  L  S  V  R  V  L  D  L  L  L  L  L  T  S  L  S  T  I  Q  K  L :   W  I  G  W  F  *  *  M  Q </first_frame>
            <second_frame>  V  E  I  *  Q  K  N  P  V  L  L  C  V  C  N  A  N  I  F  L  S  R  S  W  W  S  Y  A  A  G  I  N  Q  F  E  M  V  E  F  E  A  F  N  D  L  G  W  L  *  F  S  G  I  S  T  *  T  S  *  K  Y  Q  R  P  V  C  *  K  V  G  F  T  N  *  E  N  T   : S  K  L  F  K  G  L  C  H  E  *  L  C  E  A  K  R  T  E  R  G  Q  S  S  C  T  S  P  W  F  *  *  :  H  M  F  R  V  E  V  H  A  S  I  A  *  G  G  W  F  G  D  L  G  S  *  Y  P  W  M  G  F  L  *  S  R :   K  A  S  F  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  L  H  *  E  A  N  G  A  C  R  S  E  S  W  I  C  C  C  Y  *  L  L  C  P  L  S  R  S   : C  G  *  A  G  F  N  R  C   </second_frame>
            <third_frame>   L  K  F  S  R  K  I  Q  Y  Y  S  A  S  A  M  L  T  S  F  S  A  G  A  G  G  A  T  P  P  A  L  T  N  L  K  W  L  N  S  R  R  L  T  I  W  A  G  C  D  F  P  E  F  L  P  K  Q  V  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  F  S  K  G  C  V  M  S  S  C  V  K  P  K  E  Q  K  E  A  N  P  V  V  L  L  H  G  F  D  S :   T  C  L  E  W  R  Y  T  L  P  L  L  E  E  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  Y  I  K  R  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  H  Y  P  E  A  :  V  D  R  L  V  L  I  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5701" stop="5931"/>
                    <exon start="6926" stop="7020"/>
                    <exon start="7099" stop="7196"/>
                    <exon start="7313" stop="7362"/>
                    <exon start="8032" stop="8127"/>
                    <exon start="8243" stop="8269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFSRKIQYYSASAMLTSFSAGAGGATPPALTNLKWLNSRRLTIWAGCDFPEFLPKQVENIKDPYARKLASRIERIPVNFSKGCVMSSCVKPKEQKEANPVVLLHGFDSTCLEWRYTLPLLEEAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTYIKRPMVLVGPSLGSAVAIDFSVHYPEAVDRLVLIDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17671" PGL_stop="20217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17671" e_stop="17917"/>
            <exon e_start="19040" e_stop="19134"/>
            <exon e_start="19214" e_stop="19311"/>
            <exon e_start="19426" e_stop="19475"/>
            <exon e_start="19928" e_stop="20217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17671" e_stop="17917" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.950">
            <gDNA_intron_boundary i_start="17918" i_stop="19039" i_length="1122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19040" e_stop="19134" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.829">
            <gDNA_intron_boundary i_start="19135" i_stop="19213" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19214" e_stop="19311" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.830">
            <gDNA_intron_boundary i_start="19312" i_stop="19425" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19426" e_stop="19475" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="19476" i_stop="19927" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19928" e_stop="20217" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17671" stop="17917"/>
              <exon start="19040" stop="19134"/>
              <exon start="19214" stop="19311"/>
              <exon start="19426" stop="19475"/>
              <exon start="19928" stop="20217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCGGTGGCCACCGTGCACGGCTGAGCGACTGAGAAACAAAGAATATGCTGACATTTTTCTCAGCCGGAACCGGTGGTGCTCCTCCGCCAGCATTTCTACTAACTGGAACCAATTTGAAATGCTCTTATTCGAGGCGTTTAACGATCAGGGCAGGTGAATTTCCGGATTTTCTTCCTATACAAATCGAGAATATCAAAGACCCTTATGCTAGAAAGCTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTATCGAAGGGATGCATCATGAGTAGTTGTGTGAAGCCAAAAGAACAGACAGAGGCCAATCCAGTTGTGCTTCTCCATGGTTTTGATAG : CTCATGTTTAGAGTGGAGGTACACTCTTCCAATGCTTGAGGATGCTGGATTGGAGACATGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG : GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCCACATCAAGAAGCCAATGGTACTTGTTGGACCTAGTCTTGGATCTGCTGTTGCTATTGACTTTTCTGTTAAATATCCAGAAGCTGTAAGTTCATTCGGTAACTTAGGATCCCTGTTCAGATGTTGTAAATTACTTTCCTGTATGAAGAAGGTATTATTTTATGCTTGCTTCAAGTAGCTTTACTTTATCAGGTTGATAGGCTGGTTTTAATTGATGCAAGTGTTTACGCGGAAGGTACAGGAAACCTTGCAACCTTACCCAAAGCAGTAGCTTATGCT</gDNA_template>
            <first_frame> K  N  R  W  P  P  C  T  A  E  R  L  R  N  K  E  Y  A  D  I  F  L  S  R  N  R  W  C  S  S  A  S  I  S  T  N  W  N  Q  F  E  M  L  L  F  E  A  F  N  D  Q  G  R  *  I  S  G  F  S  S  Y  T  N  R  E  Y  Q  R  P  L  C  *  K  A  G  F  T  N  *  E  N  T   : S  K  L  I  E  G  M  H  H  E  *  L  C  E  A  K  R  T  D  R  G  Q  S  S  C  A  S  P  W  F  *  *  :  L  M  F  R  V  E  V  H  S  S  N  A  *  G  C  W  I  G  D  M  G  S  *  Y  P  W  M  G  F  L  *  F  R :   K  A  S  I  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  P  H  Q  E  A  N  G  T  C  W  T  *  S  W  I  C  C  C  Y  *  L  F  C  *  I  S  R  S  C  K  F  I  R  *  L  R  I  P  V  Q  M  L  *  I  T  F  L  Y  E  E  G  I  I  L  C  L  L  Q  V  A  L  L  Y  Q  V  D  R  L  V  L  I  D  A  S  V  Y  A  E  G  T  G  N  L  A  T  L  P  K  A  V  A  Y  A </first_frame>
            <second_frame>  K  T  G  G  H  R  A  R  L  S  D  *  E  T  K  N  M  L  T  F  F  S  A  G  T  G  G  A  P  P  P  A  F  L  L  T  G  T  N  L  K  C  S  Y  S  R  R  L  T  I  R  A  G  E  F  P  D  F  L  P  I  Q  I  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  L  S  K  G  C  I  M  S  S  C  V  K  P  K  E  Q  T  E  A  N  P  V  V  L  L  H  G  F  D  S :   S  C  L  E  W  R  Y  T  L  P  M  L  E  D  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  H  I  K  K  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  K  Y  P  E  A  V  S  S  F  G  N  L  G  S  L  F  R  C  C  K  L  L  S  C  M  K  K  V  L  F  Y  A  C  F  K  *  L  Y  F  I  R  L  I  G  W  F  *  L  M  Q  V  F  T  R  K  V  Q  E  T  L  Q  P  Y  P  K  Q  *  L  M   </second_frame>
            <third_frame>   K  P  V  A  T  V  H  G  *  A  T  E  K  Q  R  I  C  *  H  F  S  Q  P  E  P  V  V  L  L  R  Q  H  F  Y  *  L  E  P  I  *  N  A  L  I  R  G  V  *  R  S  G  Q  V  N  F  R  I  F  F  L  Y  K  S  R  I  S  K  T  L  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  Y  R  R  D  A  S  *  V  V  V  *  S  Q  K  N  R  Q  R  P  I  Q  L  C  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  L  F  Q  C  L  R  M  L  D  W  R  H  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  H  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  S  R  S  Q  W  Y  L  L  D  L  V  L  D  L  L  L  L  L  T  F  L  L  N  I  Q  K  L  *  V  H  S  V  T  *  D  P  C  S  D  V  V  N  Y  F  P  V  *  R  R  Y  Y  F  M  L  A  S  S  S  F  T  L  S  G  *  *  A  G  F  N  *  C  K  C  L  R  G  R  Y  R  K  P  C  N  L  T  Q  S  S  S  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17708" stop="17917"/>
                    <exon start="19040" stop="19134"/>
                    <exon start="19214" stop="19311"/>
                    <exon start="19426" stop="19475"/>
                    <exon start="19928" stop="20116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNMLTFFSAGTGGAPPPAFLLTGTNLKCSYSRRLTIRAGEFPDFLPIQIENIKDPYARKLASRIERIPVNLSKGCIMSSCVKPKEQTEANPVVLLHGFDSSCLEWRYTLPMLEDAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTHIKKPMVLVGPSLGSAVAIDFSVKYPEAVSSFGNLGSLFRCCKLLSCMKKVLFYACFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32548" PGL_stop="35939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32548" e_stop="33176"/>
            <exon e_start="34882" e_stop="35113"/>
            <exon e_start="35209" e_stop="35691"/>
            <exon e_start="35834" e_stop="35939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32548" e_stop="33176" e_length="629"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33177" i_stop="34881" i_length="1705"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34882" e_stop="35113" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35114" i_stop="35208" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35209" e_stop="35691" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.874">
            <gDNA_intron_boundary i_start="35692" i_stop="35833" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35834" e_stop="35939" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32548" stop="33130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6710-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32561" stop="33176"/>
              <exon start="34882" stop="35113"/>
              <exon start="35209" stop="35691"/>
              <exon start="35834" stop="35939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAAGCTTAAAAACACTTACAATGGCGATCCTGATTCGATCACGACCGTTGATCAGAACATTAACAAATTTCAAAACAATCACAACCGTTCCTTTCCTCTCACAAGAACCTCAACTCGCCGGGACTCCGCCGGAGAACACTACCCCACTACCCCCGAATCCATCCTCCGGTAGCCCACTCTACAATGAAAACTGGAGATCCCCATTTGCAGCTACCTCACAATCTGTATCTTCTTCCGTTGTACCCTTGGGGTTCTTACGCCAATCGCCTGCTGCGCGTATGCAGGCAATGTCGGAATCACTTGATGTGGAAGGTTTAATGAATCTGTTTGCTGATTGGGTAACGACGCAGAGGTGGGAGGATATGAAACAGGTGTTTGAGCTTTGGATTAGGTCGTTGGATAGAAATGGGAAACCGAATAAGCCTGATGCGAATCTGTTTAATTATTATTTGAGAGCTAATTTGATGATGGGTGCTACTGCTGATGATTTGTTGGGATTAGCTAGTCAAATGGAGGAGTATGGACTTGTTGCTAATACTGCTTCGCATAATTTGATCTTGAAAGCTATGTTTCAATCTGGTGAACCATTGTCATGGGCTGATAAATCTGTCAAATTGCTCGAAAG : GATGATTGCAACTGGAGTTGAGTATAAAGAAGCTTTGCCTGATGAAGAGTCATATGATTTGGTTACTGGCTTGCTATTTAAAGCAAACCTTATTGATGATGCGTTGAAATATATTGATTCAGCCTTAAAATCTGGGTATAAGCTATCCATGAATGTATTTAATGAGTGTGTGCGAAGCTGTATCTACAGCAACAGGCTGGATGCATTGGTGTCAATAATAGAGAAATGCAAG : AAAACAGATCAGAACAAAGGCCTGTTGCCGCCTTGGAACATGTGCACACACCTTGCAGATAGTGCATTACAAGCAGATAATAGTGAACTAGCTTTTACTTCCTTGGAGTTCTTTGTGAAATGGATTGTTAGAGGTGAGACTGTGAAGCCCCCTGTTTTACTCAGTGTAGGCGAAGGACTGCTTGTGGCTGCACTTGGAACTGCTGGTAGAACATACAATGTGAAACTCCTGAATGGTGCTTGGGAAGTCCTTAAGCGCTCACTACGGCAAATGAGGATCCCTAACCCTGAGTCTTTCCTTGCAAAGATGTATGCCCATGCATCATTGGGACAATTGCAGAATGCTTTTGCTACCCTGCATGAGTTTGAGAAAGCTTATGCTAGTTCTAAAGATGAGAGTGCAGAAGAACTATTTTCTCCCTTTACCTCTTTGAATCCACTGGCTGTTGCTTGCTGCAGGAATGGTTTTGTCACCCTGGACTCT : GTTTACTATCAGCTGGAGAATTTGAGCCGAGCAGACCCCCCTTTCAAGTCTCTTGCTGCACTCAATTGTGTAATTTTAGGCTGTGCCAATATATGGGATATTGATC</gDNA_template>
            <first_frame> P  K  S  L  K  T  L  T  M  A  I  L  I  R  S  R  P  L  I  R  T  L  T  N  F  K  T  I  T  T  V  P  F  L  S  Q  E  P  Q  L  A  G  T  P  P  E  N  T  T  P  L  P  P  N  P  S  S  G  S  P  L  Y  N  E  N  W  R  S  P  F  A  A  T  S  Q  S  V  S  S  S  V  V  P  L  G  F  L  R  Q  S  P  A  A  R  M  Q  A  M  S  E  S  L  D  V  E  G  L  M  N  L  F  A  D  W  V  T  T  Q  R  W  E  D  M  K  Q  V  F  E  L  W  I  R  S  L  D  R  N  G  K  P  N  K  P  D  A  N  L  F  N  Y  Y  L  R  A  N  L  M  M  G  A  T  A  D  D  L  L  G  L  A  S  Q  M  E  E  Y  G  L  V  A  N  T  A  S  H  N  L  I  L  K  A  M  F  Q  S  G  E  P  L  S  W  A  D  K  S  V  K  L  L  E  R :   M  I  A  T  G  V  E  Y  K  E  A  L  P  D  E  E  S  Y  D  L  V  T  G  L  L  F  K  A  N  L  I  D  D  A  L  K  Y  I  D  S  A  L  K  S  G  Y  K  L  S  M  N  V  F  N  E  C  V  R  S  C  I  Y  S  N  R  L  D  A  L  V  S  I  I  E  K  C  K  :  K  T  D  Q  N  K  G  L  L  P  P  W  N  M  C  T  H  L  A  D  S  A  L  Q  A  D  N  S  E  L  A  F  T  S  L  E  F  F  V  K  W  I  V  R  G  E  T  V  K  P  P  V  L  L  S  V  G  E  G  L  L  V  A  A  L  G  T  A  G  R  T  Y  N  V  K  L  L  N  G  A  W  E  V  L  K  R  S  L  R  Q  M  R  I  P  N  P  E  S  F  L  A  K  M  Y  A  H  A  S  L  G  Q  L  Q  N  A  F  A  T  L  H  E  F  E  K  A  Y  A  S  S  K  D  E  S  A  E  E  L  F  S  P  F  T  S  L  N  P  L  A  V  A  C  C  R  N  G  F  V  T  L  D  S  :  V  Y  Y  Q  L  E  N  L  S  R  A  D  P  P  F  K  S  L  A  A  L  N  C  V  I  L  G  C  A  N  I  W  D  I  D  </first_frame>
            <second_frame>  Q  K  A  *  K  H  L  Q  W  R  S  *  F  D  H  D  R  *  S  E  H  *  Q  I  S  K  Q  S  Q  P  F  L  S  S  H  K  N  L  N  S  P  G  L  R  R  R  T  L  P  H  Y  P  R  I  H  P  P  V  A  H  S  T  M  K  T  G  D  P  H  L  Q  L  P  H  N  L  Y  L  L  P  L  Y  P  W  G  S  Y  A  N  R  L  L  R  V  C  R  Q  C  R  N  H  L  M  W  K  V  *  *  I  C  L  L  I  G  *  R  R  R  G  G  R  I  *  N  R  C  L  S  F  G  L  G  R  W  I  E  M  G  N  R  I  S  L  M  R  I  C  L  I  I  I  *  E  L  I  *  *  W  V  L  L  L  M  I  C  W  D  *  L  V  K  W  R  S  M  D  L  L  L  I  L  L  R  I  I  *  S  *  K  L  C  F  N  L  V  N  H  C  H  G  L  I  N  L  S  N  C  S  K   : G  *  L  Q  L  E  L  S  I  K  K  L  C  L  M  K  S  H  M  I  W  L  L  A  C  Y  L  K  Q  T  L  L  M  M  R  *  N  I  L  I  Q  P  *  N  L  G  I  S  Y  P  *  M  Y  L  M  S  V  C  E  A  V  S  T  A  T  G  W  M  H  W  C  Q  *  *  R  N  A  R :   K  Q  I  R  T  K  A  C  C  R  L  G  T  C  A  H  T  L  Q  I  V  H  Y  K  Q  I  I  V  N  *  L  L  L  P  W  S  S  L  *  N  G  L  L  E  V  R  L  *  S  P  L  F  Y  S  V  *  A  K  D  C  L  W  L  H  L  E  L  L  V  E  H  T  M  *  N  S  *  M  V  L  G  K  S  L  S  A  H  Y  G  K  *  G  S  L  T  L  S  L  S  L  Q  R  C  M  P  M  H  H  W  D  N  C  R  M  L  L  L  P  C  M  S  L  R  K  L  M  L  V  L  K  M  R  V  Q  K  N  Y  F  L  P  L  P  L  *  I  H  W  L  L  L  A  A  G  M  V  L  S  P  W  T  L :   F  T  I  S  W  R  I  *  A  E  Q  T  P  L  S  S  L  L  L  H  S  I  V  *  F  *  A  V  P  I  Y  G  I  L  I </second_frame>
            <third_frame>   K  K  L  K  N  T  Y  N  G  D  P  D  S  I  T  T  V  D  Q  N  I  N  K  F  Q  N  N  H  N  R  S  F  P  L  T  R  T  S  T  R  R  D  S  A  G  E  H  Y  P  T  T  P  E  S  I  L  R  *  P  T  L  Q  *  K  L  E  I  P  I  C  S  Y  L  T  I  C  I  F  F  R  C  T  L  G  V  L  T  P  I  A  C  C  A  Y  A  G  N  V  G  I  T  *  C  G  R  F  N  E  S  V  C  *  L  G  N  D  A  E  V  G  G  Y  E  T  G  V  *  A  L  D  *  V  V  G  *  K  W  E  T  E  *  A  *  C  E  S  V  *  L  L  F  E  S  *  F  D  D  G  C  Y  C  *  *  F  V  G  I  S  *  S  N  G  G  V  W  T  C  C  *  Y  C  F  A  *  F  D  L  E  S  Y  V  S  I  W  *  T  I  V  M  G  *  *  I  C  Q  I  A  R  K  :  D  D  C  N  W  S  *  V  *  R  S  F  A  *  *  R  V  I  *  F  G  Y  W  L  A  I  *  S  K  P  Y  *  *  C  V  E  I  Y  *  F  S  L  K  I  W  V  *  A  I  H  E  C  I  *  *  V  C  A  K  L  Y  L  Q  Q  Q  A  G  C  I  G  V  N  N  R  E  M  Q   : E  N  R  S  E  Q  R  P  V  A  A  L  E  H  V  H  T  P  C  R  *  C  I  T  S  R  *  *  *  T  S  F  Y  F  L  G  V  L  C  E  M  D  C  *  R  *  D  C  E  A  P  C  F  T  Q  C  R  R  R  T  A  C  G  C  T  W  N  C  W  *  N  I  Q  C  E  T  P  E  W  C  L  G  S  P  *  A  L  T  T  A  N  E  D  P  *  P  *  V  F  P  C  K  D  V  C  P  C  I  I  G  T  I  A  E  C  F  C  Y  P  A  *  V  *  E  S  L  C  *  F  *  R  *  E  C  R  R  T  I  F  S  L  Y  L  F  E  S  T  G  C  C  L  L  Q  E  W  F  C  H  P  G  L   : C  L  L  S  A  G  E  F  E  P  S  R  P  P  F  Q  V  S  C  C  T  Q  L  C  N  F  R  L  C  Q  Y  M  G  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32548" stop="33176"/>
                    <exon start="34882" stop="35113"/>
                    <exon start="35209" stop="35691"/>
                    <exon start="35834" stop="35938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSLKTLTMAILIRSRPLIRTLTNFKTITTVPFLSQEPQLAGTPPENTTPLPPNPSSGSPLYNENWRSPFAATSQSVSSSVVPLGFLRQSPAARMQAMSESLDVEGLMNLFADWVTTQRWEDMKQVFELWIRSLDRNGKPNKPDANLFNYYLRANLMMGATADDLLGLASQMEEYGLVANTASHNLILKAMFQSGEPLSWADKSVKLLERMIATGVEYKEALPDEESYDLVTGLLFKANLIDDALKYIDSALKSGYKLSMNVFNECVRSCIYSNRLDALVSIIEKCKKTDQNKGLLPPWNMCTHLADSALQADNSELAFTSLEFFVKWIVRGETVKPPVLLSVGEGLLVAALGTAGRTYNVKLLNGAWEVLKRSLRQMRIPNPESFLAKMYAHASLGQLQNAFATLHEFEKAYASSKDESAEELFSPFTSLNPLAVACCRNGFVTLDSVYYQLENLSRADPPFKSLAALNCVILGCANIWDID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="86507" PGL_stop="84725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86507" e_stop="86353"/>
            <exon e_start="86259" e_stop="86042"/>
            <exon e_start="85488" e_stop="85374"/>
            <exon e_start="85048" e_stop="84959"/>
            <exon e_start="84769" e_stop="84725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86507" e_stop="86353" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.816">
            <gDNA_intron_boundary i_start="86352" i_stop="86260" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86259" e_stop="86042" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86041" i_stop="85489" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85488" e_stop="85374" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85373" i_stop="85049" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85048" e_stop="84959" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84958" i_stop="84770" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84769" e_stop="84725" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86507" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="84959"/>
              <exon start="84769" stop="84725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86489" stop="86353"/>
              <exon start="86259" stop="86042"/>
              <exon start="85488" stop="85374"/>
              <exon start="85048" stop="84959"/>
              <exon start="84769" stop="84754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6711-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGACGCTGAGCATGGAGAATTCCGACGAAGAACCGCCGCTCGCCGTCGAAATCAACGACGCCGTCAACTCTAATCAACTGACAAAGAGCTCAAAGCTTCCGCCGGTTGGCGTCACCGTCATCACCGGCTATCTCGGTTCCGGAAAATCCACT : TTGATCAATTACATATTGAAAACTCAACATGGCAAGAAAATAGCAGTGATACTTAATGAGTTTGGTGAGGAATTAGGAGTTGAGAGAGCAATGATAAATGAAGGGGAAGAAGGTGATCTTGTGGAGGAATGGGTAGAGCTTGCAAATGGATGTATTTGCTGTACTGTGAAGCATAGTTTGGTTCAAGCATTGGAGCAACTTGTTCAGAGAAAAGAGAG : GCTTGATCATATATTGCTAGAGACTACTGGTTTGGCAAACCCTGCACCTCTTGCATCTGTGCTTTGGTTGGATGATCAGCTGGAATCAGATGTTAGGCTTGACTCCATAATCACT : GTTGTTGATGCAAAGAACCTTCGGTATCAGCTAAAACCAAATCCTGACTCCTCTTCATTTCCTGAAGCTTATTTACAAATAGCTTTTGCG : GATGTTATCATTCTTAACAAGGTAGATCTAATTTCTCTAGATGAC</gDNA_template>
            <first_frame> *  R  R  *  A  W  R  I  P  T  K  N  R  R  S  P  S  K  S  T  T  P  S  T  L  I  N  *  Q  R  A  Q  S  F  R  R  L  A  S  P  S  S  P  A  I  S  V  P  E  N  P  L :   *  S  I  T  Y  *  K  L  N  M  A  R  K  *  Q  *  Y  L  M  S  L  V  R  N  *  E  L  R  E  Q  *  *  M  K  G  K  K  V  I  L  W  R  N  G  *  S  L  Q  M  D  V  F  A  V  L  *  S  I  V  W  F  K  H  W  S  N  L  F  R  E  K  R   : G  L  I  I  Y  C  *  R  L  L  V  W  Q  T  L  H  L  L  H  L  C  F  G  W  M  I  S  W  N  Q  M  L  G  L  T  P  *  S  L :   L  L  M  Q  R  T  F  G  I  S  *  N  Q  I  L  T  P  L  H  F  L  K  L  I  Y  K  *  L  L  R :   M  L  S  F  L  T  R  *  I  *  F  L  *  M   </first_frame>
            <second_frame>  E  D  A  E  H  G  E  F  R  R  R  T  A  A  R  R  R  N  Q  R  R  R  Q  L  *  S  T  D  K  E  L  K  A  S  A  G  W  R  H  R  H  H  R  L  S  R  F  R  K  I  H   : F  D  Q  L  H  I  E  N  S  T  W  Q  E  N  S  S  D  T  *  *  V  W  *  G  I  R  S  *  E  S  N  D  K  *  R  G  R  R  *  S  C  G  G  M  G  R  A  C  K  W  M  Y  L  L  Y  C  E  A  *  F  G  S  S  I  G  A  T  C  S  E  K  R  E  :  A  *  S  Y  I  A  R  D  Y  W  F  G  K  P  C  T  S  C  I  C  A  L  V  G  *  S  A  G  I  R  C  *  A  *  L  H  N  H   : C  C  *  C  K  E  P  S  V  S  A  K  T  K  S  *  L  L  F  I  S  *  S  L  F  T  N  S  F  C   : G  C  Y  H  S  *  Q  G  R  S  N  F  S  R  *  </second_frame>
            <third_frame>   K  T  L  S  M  E  N  S  D  E  E  P  P  L  A  V  E  I  N  D  A  V  N  S  N  Q  L  T  K  S  S  K  L  P  P  V  G  V  T  V  I  T  G  Y  L  G  S  G  K  S  T  :  L  I  N  Y  I  L  K  T  Q  H  G  K  K  I  A  V  I  L  N  E  F  G  E  E  L  G  V  E  R  A  M  I  N  E  G  E  E  G  D  L  V  E  E  W  V  E  L  A  N  G  C  I  C  C  T  V  K  H  S  L  V  Q  A  L  E  Q  L  V  Q  R  K  E  R :   L  D  H  I  L  L  E  T  T  G  L  A  N  P  A  P  L  A  S  V  L  W  L  D  D  Q  L  E  S  D  V  R  L  D  S  I  I  T  :  V  V  D  A  K  N  L  R  Y  Q  L  K  P  N  P  D  S  S  S  F  P  E  A  Y  L  Q  I  A  F  A  :  D  V  I  I  L  N  K  V  D  L  I  S  L  D  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86505" stop="86353"/>
                    <exon start="86259" stop="86042"/>
                    <exon start="85488" stop="85374"/>
                    <exon start="85048" stop="84959"/>
                    <exon start="84769" stop="84725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTLSMENSDEEPPLAVEINDAVNSNQLTKSSKLPPVGVTVITGYLGSGKSTLINYILKTQHGKKIAVILNEFGEELGVERAMINEGEEGDLVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESDVRLDSIITVVDAKNLRYQLKPNPDSSSFPEAYLQIAFADVIILNKVDLISLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="100931" PGL_stop="98861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100931" e_stop="100831"/>
            <exon e_start="100597" e_stop="100489"/>
            <exon e_start="100140" e_stop="100042"/>
            <exon e_start="99899" e_stop="99834"/>
            <exon e_start="99261" e_stop="99154"/>
            <exon e_start="98975" e_stop="98861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.963" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="100931" e_stop="100831" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.963">
            <gDNA_intron_boundary i_start="100830" i_stop="100598" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100597" e_stop="100489" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="100488" i_stop="100141" i_length="348"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100140" e_stop="100042" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100041" i_stop="99900" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99899" e_stop="99834" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99833" i_stop="99262" i_length="572"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99261" e_stop="99154" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99153" i_stop="98976" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98975" e_stop="98861" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100931" stop="100831"/>
              <exon start="100597" stop="100489"/>
              <exon start="100140" stop="100042"/>
              <exon start="99899" stop="99834"/>
              <exon start="99261" stop="99154"/>
              <exon start="98975" stop="98861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGGAGCGTCATGGACAGACCCTGATTCCATAGCTTTGATGGTCATGCAACAAATGCTCGGATCATGGAGCAAAAGTTCAGGAGGAGGAAAGCACATGGG : TTCAGAGCTTGTTCAGAGGGTGGCCATCAATGAGCTAGCTGAAAGTGTGATGGCTTTTAACACCAACTATAAAGATACAGGGCTGTTTGGTGTCTATGCTGAAGCTAAG : CCTGATTGCCTGAGTGACTTGGCTTATGTCATCATGAATGGTATATGCAAGTTAAGTTACAAAGTGTCTGATGCTGATGTGGTTCGCGCACGTAATCAG : CTGAAATCTTCTTTGATGCTCCACATTGATGGATCAGGCCCTACTGCTGAAGACATTGGACGGCAG : TTAATCACATATGGCCGCAGAATTCCATATGCTGAGTTATTTTCCAGAATTGACAGTGTCGATGCTGGAACGATCAAGCGAGTTGCAAATCGTTTTATTTTTGACAGG : GATGTTGCAATATCAGCTAGGGGACCAATTCAAGATTTGCCTGATTACAATTGGTTCAGACGCAGGACATACTGGCTGCGGTACTAGATTGCTAATTCTTTCCTGATGACTTAAA</gDNA_template>
            <first_frame> S  G  A  S  W  T  D  P  D  S  I  A  L  M  V  M  Q  Q  M  L  G  S  W  S  K  S  S  G  G  G  K  H  M  G :   S  E  L  V  Q  R  V  A  I  N  E  L  A  E  S  V  M  A  F  N  T  N  Y  K  D  T  G  L  F  G  V  Y  A  E  A  K  :  P  D  C  L  S  D  L  A  Y  V  I  M  N  G  I  C  K  L  S  Y  K  V  S  D  A  D  V  V  R  A  R  N  Q  :  L  K  S  S  L  M  L  H  I  D  G  S  G  P  T  A  E  D  I  G  R  Q  :  L  I  T  Y  G  R  R  I  P  Y  A  E  L  F  S  R  I  D  S  V  D  A  G  T  I  K  R  V  A  N  R  F  I  F  D  R  :  D  V  A  I  S  A  R  G  P  I  Q  D  L  P  D  Y  N  W  F  R  R  R  T  Y  W  L  R  Y  *  I  A  N  S  F  L  M  T  *  </first_frame>
            <second_frame>  V  E  R  H  G  Q  T  L  I  P  *  L  *  W  S  C  N  K  C  S  D  H  G  A  K  V  Q  E  E  E  S  T  W   : V  Q  S  L  F  R  G  W  P  S  M  S  *  L  K  V  *  W  L  L  T  P  T  I  K  I  Q  G  C  L  V  S  M  L  K  L  S :   L  I  A  *  V  T  W  L  M  S  S  *  M  V  Y  A  S  *  V  T  K  C  L  M  L  M  W  F  A  H  V  I  S :   *  N  L  L  *  C  S  T  L  M  D  Q  A  L  L  L  K  T  L  D  G  S :   *  S  H  M  A  A  E  F  H  M  L  S  Y  F  P  E  L  T  V  S  M  L  E  R  S  S  E  L  Q  I  V  L  F  L  T  G :   M  L  Q  Y  Q  L  G  D  Q  F  K  I  C  L  I  T  I  G  S  D  A  G  H  T  G  C  G  T  R  L  L  I  L  S  *  *  L  K </second_frame>
            <third_frame>   W  S  V  M  D  R  P  *  F  H  S  F  D  G  H  A  T  N  A  R  I  M  E  Q  K  F  R  R  R  K  A  H  G  :  F  R  A  C  S  E  G  G  H  Q  *  A  S  *  K  C  D  G  F  *  H  Q  L  *  R  Y  R  A  V  W  C  L  C  *  S  *   : A  *  L  P  E  *  L  G  L  C  H  H  E  W  Y  M  Q  V  K  L  Q  S  V  *  C  *  C  G  S  R  T  *  S   : A  E  I  F  F  D  A  P  H  *  W  I  R  P  Y  C  *  R  H  W  T  A   : V  N  H  I  W  P  Q  N  S  I  C  *  V  I  F  Q  N  *  Q  C  R  C  W  N  D  Q  A  S  C  K  S  F  Y  F  *  Q   : G  C  C  N  I  S  *  G  T  N  S  R  F  A  *  L  Q  L  V  Q  T  Q  D  I  L  A  A  V  L  D  C  *  F  F  P  D  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0079C22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100931" stop="100831"/>
                    <exon start="100597" stop="100489"/>
                    <exon start="100140" stop="100042"/>
                    <exon start="99899" stop="99834"/>
                    <exon start="99261" stop="99154"/>
                    <exon start="98975" stop="98889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGASWTDPDSIALMVMQQMLGSWSKSSGGGKHMGSELVQRVAINELAESVMAFNTNYKDTGLFGVYAEAKPDCLSDLAYVIMNGICKLSYKVSDADVVRARNQLKSSLMLHIDGSGPTAEDIGRQLITYGRRIPYAELFSRIDSVDAGTIKRVANRFIFDRDVAISARGPIQDLPDYNWFRRRTYWLRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 15208 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2172 bytes was the average size of a spliced alignment
$ 10904 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2180 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:40:11
-->
