<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:43:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323414" ref_strand="+" ref_description="SGN-U323414        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21219865-21221976 REVERSE | Aliases: F17P19.10, F17P19_10(evalue: 9e-19, score=90.9) genbank/nr: hypothetical(evalue: 6e-18, score=94.4)">
      <seq>tttaactcatcattcctcattttctttcttcgatttgagaatcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaggtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaagaatttgacgatgatgataatgatgatgataataataatgttattgatgatggtgttaagggcataaaaattgaggaagaaaaggaaaacacttcaacatagtcatcttattttcatgaatattgtgttttttttctcttcgatttaatcattttggaaaacatgtaattagctaaagaatttatccgtaatctctagctaatctgtcgctaaatagctcctagctaattagattttatgttaatctatcgctcaatgaaatacctgtgatttttgttgtttagctaggaaatttatgagtagctaatttcttgttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5217" stop="3777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4917" g_stop="4077" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="840" polyA_stop="851"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U323414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4917" e_stop="4077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAATTACCTGTGATTTTTGTTGTTTAGCTAGGAAAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</genome_strand>
        <mrna_strand>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAA-TACCTGTGATTTTTGTTGTTTAGCTAGG-AAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319081" ref_strand="+" ref_description="SGN-U319081        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT1G23750.1 | Symbol: None | DNA-binding protein-related, contains weak similarity to G-quartet DNA binding protein 3 (Tetrahymena thermophila) gi:4583503:gb:AAD25098 | chr1:8400145-8401476 FORWARD | Aliases: F5O8.30, F5O8_30 (evalue: 7e-48, score=187) genbank/nr: gi|71534906|gb|AAZ32857.1| unknown [Medicago sativa] (evalue: 2e-47, score=192)">
      <seq>tgatatttagttctctcgtcaaaaccaaagccccattctgttttcctacttccaatctgaatctccagaagaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagccaccatagaacttactttatctggtgcttatcataactttttttttttaataatcgagaaattttcaaaggccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8569" stop="5191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8269" g_stop="8165" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="324" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5490" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="830" r_length="506" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="831" polyA_stop="859"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U319081" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8269" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGAC</genome_strand>
        <mrna_strand>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTCAAAGGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313592" ref_strand="+" ref_description="SGN-U313592        Tomato 200607 #1 [66 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbonic anhydrase, putative / carbonate dehydratase, putative, similar to SP:P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase | chr1:26537589-26541898 REVERSE | Aliases: None(evalue: 2e-96, score=350) genbank/nr: gi|56562175|emb|CAH60890.1| carbonic anhydrase [Lycopersicon esculentum] (evalue: 6e-144, score=514)">
      <seq>attcctccataacaaatgggtgacgttccatccattaaggcgttgaatattcataaaattaaaatttcaatataattaaagaaaattttttccaaatttcaatttagatatataaaatatttatccatacccaaatctcttttctataaatactccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttagcttaatgtaaaaaaaaaaaaaaaaaannnnnnncttgagactagttccttcgatagctatggctctctttgcctacctttcatttgtttacttttaattatgtctacacgttaggccggagttcagaatttagattttaaaatgtatatgtaattctatcgatttaccattgtttttagttaaacacataaaagtttgaccacgagtctgatcgggtttttacagaaccagtgattagatctgaaactgttatatttctatttttttaaaaaaatgcatttgttgttctttatattactgcatgcatggagtactgaggccatcagccatatcacaattataatgtaatctgttgtctgttgtagttttgaataaaaaaattgcttttgatactaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14688" stop="57496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14988" g_stop="15272" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="347" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="488" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="654" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="708" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="794" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="900" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20390" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="1234" r_length="334" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20391" i_stop="20558" i_length="168">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.885" a_score="0.45"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20559" g_stop="20636" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1235" r_stop="1312" r_length="78" r_score="0.500"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20637" i_stop="20811" i_length="175">
            <donor d_prob="0.900" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20812" g_stop="20851" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1313" r_stop="1350" r_length="38" r_score="0.575"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="20852" i_stop="20975" i_length="124">
            <donor d_prob="0.999" d_score="0.57"/>
            <acceptor a_prob="0.317" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="20976" g_stop="21000" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1375" r_length="25" r_score="0.520"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="21001" i_stop="21666" i_length="666">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="21667" g_stop="21674" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1383" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="21675" i_stop="21830" i_length="156">
            <donor d_prob="0.313" d_score="0.00"/>
            <acceptor a_prob="0.284" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="21831" g_stop="21851" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1384" r_stop="1404" r_length="21" r_score="0.762"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="21852" i_stop="22076" i_length="225">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="22077" g_stop="22127" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1405" r_stop="1453" r_length="49" r_score="0.569"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="22128" i_stop="23541" i_length="1414">
            <donor d_prob="1.000" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="23542" g_stop="23715" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1454" r_stop="1621" r_length="168" r_score="0.517"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="23716" i_stop="24054" i_length="339">
            <donor d_prob="0.000" d_score="0.52"/>
            <acceptor a_prob="0.819" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="24055" g_stop="24071" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1622" r_stop="1638" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U313592" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>1648</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14988" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20390"/>
          <exon e_start="20559" e_stop="20636"/>
          <exon e_start="20812" e_stop="20851"/>
          <exon e_start="20976" e_stop="21000"/>
          <exon e_start="21667" e_stop="21674"/>
          <exon e_start="21831" e_stop="21851"/>
          <exon e_start="22077" e_stop="22127"/>
          <exon e_start="23542" e_stop="23715"/>
          <exon e_start="24055" e_stop="24071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCACAACCTTCCTTTTTTGATGAGCCAAATATCTTACTCATACTTGTTTGATTCTACTTTCAAAAGTGAAGGCACCTGATTCCTTTAATCAGCATAGACCTATTAGTTTTAAATATTTAGAATAATAAAGAAAACACAATCTTCAACAAAACAGAAACAATGAAAAGAAGAAAATCGAG-TTCGTTGAATGAAAAGTTAAACATGTTCTTTGTCTTGGTCTCAACTGATATCTATGTCCTTCAACTTTAGAGTGCACAAGTAAAAACTTCAACTTGTATAAAACTGAACAAGTAGACACACATCCTATGTGGCATGATACATATATGACGTCACATAGGACACAACTTGGCTACACAAGACGCCACCTAGAACACATATGTCTACTTGTTCAACTTTAAAGAAGTTAAAATGCTTATTGGTGCACACCTAAAGCTGGATGACATAGTTGCAAGCTGAAGCCAAGTTAAATGACACATTTATGTATTATCTCAATCCTAAAGGTTGGATTAACAATTAGTTCATGAAAACATGTTTCATTTTTTTAAAATTCAATTTGCTATGGATTCAAAAGTTGGTAAAACCATGTCTAAGAAAGAGTGAACACAAAAATCCTCCTAAGTAATTATTTGTGTGTCCAACATGATCAACATAGATACATCTTATTTTCATCAACCACATGCCACAATAGGCTTTGAGGAACAAAAACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGTCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTCTCCATTTGATGTCACCACAAATCTAAAACCTGGTGGAGTTACTGCCCCTGTTAGCACTACCACACTCCCACCTTCCTTCACTACCTTCACCGCCTTTTCACCCTGACCTGTAGTCAGTACCAAGAGGAGGAGATAGTTGTTAGTAGAAGCAGATCCAAAATCTAATTAAAATCGATGGAAGATTCTTAGCGCTGAAAACATTGTAGAAGAATTAACCTAAATAGCAGCCCTCTCAACAGCTTAAACTAAAGATAACCGTCAGATGTATAATCTGTATATAACCATTTATAATCAGTACATAATTTATGTAGACCGGCTAGAGAAAGTACATAATGAATTGGGCGGGCTATTTATGTAAAGATCCCAACATTGTACTTATGAAATGATGAGTTCAGAATTTATCAAGGAAATTTTGCAATTGTAGTTTTTGATCATCAATTGATTCAAAATATGCAGTTTTAATCTTTATACTCGTGAATGTTCACTATTATTAACTGTTAAACTATTTAGTTACCTATGTGTTATGTTAAATTTGTACGTGCCTGACAATGCGTTTACAAGAACGGAAATTTTCAAAGTTGAAACTAATTTCTTACCAACTGAATCATAAACAACATCAAACTTGTCAGGCAGATCTTCAAAATTCTCCTTAGTGTAGTCAATAGCTAAATCAGCTCCTAAGCTTTTCAGGAGTTCCAACTTCCCTGTGCTAGAGGTAGCTGCTACTTTAGAAGCACCAAATACATGTTTAGCAAGCTGCATAACAGAAAAAACACGACACATCAGCTTCTATTTTTAGCAGCAGGGGCACATGAAAATATAAAAGGATTGAACATGCAGAAAAGATAGCTAAAGCTACCCAGCCTACGAGATCGTTTACACAAAAATAGGGTAAGAGGCTATTATGTTTATCTTTAAAAACGCCCAATGGATATTGAATCCATATGATGTAATGAGCGAGGTGAAGAAGACGCGTGACTGCTAATTCAGGGGAGTAAATGATGAAGACTGAAAAAATGATTTAATTTGACATTGTCCTCAAATATTCCTACTGAAAGCCATGTCCGTATGTTATCTTTGTAGACGCTAGCACCAGAATATTTAATCTGTTGTAGCGGACAACCTGCCTTATCTTTTGAGTTACTAATCTCACTCTTATGGACGGTTACTCATAGTTATCATTAGGTGACCTGAACACTTCTCTAGAAATCATGCTTTTCTAAAACTGAAAGAATACCTTTAAATGAGACTTATTGAAATGTTCATACCTGGATTACTAGGGATCCAACACCGCCAGCACCTCCCAAAACAAGAATGGATTTGCCAGAAGAAAATCCAGCTTTCTCAAGACCTTCATAAGCAGTCTCAATAGCTAGAGGAAGAGCAGCAGCCTCCGCAAAACTAAGATTCTTGGGTTTCAAAGCAACTAGTTTCTCTTCAACAGCAGTGTACTCAGCTAAGGATCCAAATTGCTTTGGTCCATCTAATGCTTTCTCATGTATATCTCCATATACTTCATCCCCTTCTTTTAATCCCTTTACCTGACTACCAACTTTCACTACCACACCAGCAACATCATAACCTGGCACAGTCTACACAGAAAGAAAATATATGTTTTAGTCCACATATACAGAAATATTATGTGATTTTCTCCTATTTCCTGTTAACTTGTATTGTCACAGAAGGTACACTTTTATTTACTTAATTATAACTTCAACGAGGCCCCAAACTTGTGAGGCTGATTCTTTTCCATGGTCCAAACACACATGGAAATTCTATGTCAACATGTTAAAATTGTGTGGTTATCTCATCTAAAAACTCAAAATGTTAGAAAAATCATAATTTTATTCAACCATTTACATCTTCAACAATTGCAGAATGTTGAGATACATATAATTAAGTAAATAACTATATGTTGTTTCTAACAACTTAAGCTTTTAGATTAGATGTCATACACTTCAACATGGTATCACAACAAGCACAAGTCCTGAGTTCGGTTCTCATTGCCACCCATTATCATAAATAATATCCACGTGCTTGACTCATGAAATGAATCGAACCCCCACACGAGGGGCATGTTCCAATAAAGAATTAAGTAAATGAATGTGTGTTCCCTCTAACAACATAAACTTTTAGAAGAAACGTCACACATAAACACAAGATAGTACAGATAGTCTCTAATTTAATATTGGCCATCGATGAGGGTCACAGAAATCTAAACACTAGTAGTGACCACTGTAGTCATT-AACTGAAATAAACACGAAAAATAGTTGAACGTCCTCTGTGCTGAAATCCAAGGAGAAAAGCTGCACTAACACTATAACACAAGTGATAAGAAATGCAAATTTACAATTCAAAAATGGAATTCAAGCCTAACTCAAAGATAACAAGAAAAGGGTGCCTAAACTTACTGGAAGTGGAGAATCAGTGGCCTTAAATTTTCCGAGCCGTCGTTTAAAATCAACAGGGTTAAGAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGCAACATTGGACTCCAACTTCAAAACATCAACACTTCCATAATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGA</genome_strand>
        <mrna_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAAAAAA........................................................................................................................................................................AAAAAAAAAAAANNNNNNNCTTGAGACTAGTTCCTTCGATAGCTATGGCT-CTCTTTGCCTACCTTTCATTTGTTTACT...............................................................................................................................................................................TTTAATTA-T-GTCTACACGTTAGGCCGGAGTTCAGAATT............................................................................................................................TAGATTTTAAAATGTATATGTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCGAT............................................................................................................................................................TTACCATTGTTTTTAGTTAAA.................................................................................................................................................................................................................................C-ACATAAAAGTTTGACCACGAGTC-TGATCGGGTTTTTACAGAACCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGATCTGA-AACTGTTATATTTCTATTTTTTTAAAAAAATGCATTTGTTGTTCTTTATAT-TACTG-CATGCATGGAGTACTGAGGCCATCA-GCCATATCACAA-TTATAATGTAATC-TGTTGTCTGTTGTAGTTTTGAATAAAAAAATTGCT-TTTGATACTAAAAAAA...................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334470" ref_strand="+" ref_description="SGN-U334470        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbonic anhydrase, putative / carbonate dehydratase, putative, similar to SP:P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase | chr1:26537589-26541898 REVERSE | Aliases: None(evalue: 2e-86, score=316) genbank/nr: gi|56562175|emb|CAH60890.1| carbonic anhydrase [Lycopersicon esculentum] (evalue: 7e-129, score=463)">
      <seq>gtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttncaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttncagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14877" stop="20623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="15272" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15495" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="150" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15496" i_stop="15829" i_length="334">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15830" g_stop="15888" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="258" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="375" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="429" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="515" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="621" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20323" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="888" r_length="267" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U334470" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="15272"/>
          <exon e_start="15442" e_stop="15495"/>
          <exon e_start="15830" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</genome_strand>
        <mrna_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................TCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTNCAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTNCAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313593" ref_strand="+" ref_description="SGN-U313593        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbonic anhydrase 2 / carbonate dehydratase 2 (CA2) (CA18), nearly identical to SP:P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana} | chr5:4757975-4762591 FORWARD | Aliases: T9L3.40, T9L3_40(evalue: 6e-77, score=173) genbank/nr: gi|56562175|emb|CAH60890.1| carbonic anhydrase [Lycopersicon esculentum] (evalue: 6e-124, score=254)">
      <seq>aagcgttttattcattttcctctttctcccttagcttcatcatcaacgagggggactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtctactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14895" stop="20676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15195" g_stop="15272" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="281" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="330" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="447" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18124" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="475" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18125" i_stop="19103" i_length="979">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19104" g_stop="19160" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="532" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="638" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20376" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="958" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U313593" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15195" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18124"/>
          <exon e_start="19104" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAG</genome_strand>
        <mrna_strand>AAGCGTTTTATTCATTTTCCTCTTTCTCCCTTAGCTTCATCATCAACGAGGGGGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCTACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334471" ref_strand="+" ref_description="SGN-U334471        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.1); similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.3); similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.2); similar to chloroplast carbonic anhydrase precursor [Thlaspi caerulescens] (GB:AAS65454.1); contains InterPro domain Carbonic anhydrase, prokaryotic (InterPro:IPR001765) | chr5:4757975-4762618 FORWARD | Aliases: None(evalue: 5e-58, score=211) genbank/nr: gi|56562175|emb|CAH60890.1| carbonic anhydrase [Lycopersicon esculentum] (evalue: 4e-85, score=273)">
      <seq>ttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacgggcggagcnttngggtagttaaancaaggctagggtgcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14925" stop="19463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15225" g_stop="15272" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="110" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15664" i_length="161">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15693" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="137" r_length="27" r_score="0.448"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15694" i_stop="15747" i_length="54">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="274" r_length="137" r_score="0.759"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="323" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="440" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="494" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="580" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U334471" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15225" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15665" e_stop="15693"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG</genome_strand>
        <mrna_strand>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG.................................................................................................................................................................TGAAAAGAATGAGCT-GG-AAGATACAGC......................................................TGCGGCGAA-GATAAGGCAG-TTGACGGGCGGAG-CNTTNGGGTAGTT-AAANCAAGGCTAGGGTGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334472" ref_strand="+" ref_description="SGN-U334472        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.1); similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.3); similar to carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) [Arabidopsis thaliana] (TAIR:At3g01500.2); similar to chloroplast carbonic anhydrase precursor [Thlaspi caerulescens] (GB:AAS65454.1); contains InterPro domain Carbonic anhydrase, prokaryotic (InterPro:IPR001765) | chr5:4757975-4762618 FORWARD | Aliases: None(evalue: 3e-36, score=118) genbank/nr: gi|56562175|emb|CAH60890.1| carbonic anhydrase [Lycopersicon esculentum] (evalue: 5e-43, score=177)">
      <seq>ggcagtggacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttaaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcacagccctaggttcttggtttttgcttgctctcattgtcgagtctgcccatcacacatactcgatttccaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15489" stop="18054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15789" g_stop="15888" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="149" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.767" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17693" g_stop="17754" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U334472" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15789" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACC</genome_strand>
        <mrna_strand>GGCAGTGGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTAAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCACAGCCCTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTCATTGTCGAGTCTGCCCATCACACATACTCGATTTCCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314190" ref_strand="+" ref_description="SGN-U314190        Tomato 200607 #1 [50 ESTs aligned] arabidopsis/peptide: AT1G23740.1 | Symbol: None | oxidoreductase, zinc-binding dehydrogenase family protein, contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family | chr1:8398115-8399717 REVERSE | Aliases: F5O8.29, F5O8_29 (evalue: 2e-114, score=410) genbank/nr: gi|21553644|gb|AAM62737.1| Quinone oxidoreductase-like protein [Arabidopsis thaliana](evalue: 2e-113, score=413)">
      <seq>atcggccgaattgactagagtgaccattccaaaagtataaaattttcttcatattcttagcttgaactagagtttcttaaagtagttctacgtttcaccacaactcatgttagtattttgtgtcttgaatgctctttttagtttgtggctattaatttccttatggcctcatcaaaaacagggaaaattatgaggacaagatattccaaatcactattttactaacaaatggatggctgaaaatgaattctacccaaaaaaaagaaaatagaagccaaaatcaatcatttcatcttatctatcatgcacataaattgtttgaggaaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaataattacttaggaggatttttgtgttcactctttcttagacatggttttaccaacttttgaatccatagcaaattgaattttaaaaaaatgaaacatgttttcatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24808" stop="20618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24508" g_stop="23732" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="790" r_length="777" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="1114" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1115" r_stop="1274" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21427" g_stop="20922" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1275" r_stop="1780" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1781" polyA_stop="1795"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U314190" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1767</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24508" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="20922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGTGACCATTTCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</genome_strand>
        <mrna_strand>ACTAGAGTGACCATTCCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314191" ref_strand="+" ref_description="SGN-U314191        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G23740.1 | Symbol: None | oxidoreductase, zinc-binding dehydrogenase family protein, contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family | chr1:8398115-8399717 REVERSE | Aliases: F5O8.29, F5O8_29 (evalue: 3e-100, score=362) genbank/nr: gi|51979667|ref|XP_507580.1| PREDICTED OSJNBb0011E04.125 gene product [Oryza sativa (japonica cultivar-group)] >gi|50945155|ref|XP_482105.1| putative oxidoreductase, zinc-binding [Oryza sativa (japonica cultivar-group)] >gi|51964860|ref|XP_507214.1| PREDICTED OSJNBb0011E04.125 gene product [Oryza sativa (japonica cultivar-group)] >gi|40253459|dbj|BAD05410.1| putative oxidoreductase, zinc-binding [Oryza sativa (japonica cultivar-group)] >gi|40253687|dbj|BAD05630.1| putative oxidoreductase, zinc-binding [Oryza sativa (japonica cultivar-group)] (evalue: 1e-102, score=376)">
      <seq>atttcatcttctttatcatgcacataaattgtttgaggaaaatactgagtgagaggttaaaaaaacagctggaaagaaagaagaacaatgaaagctctattatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaaattttccactgttttgccacttaaagtctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgccttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagcaggattttcttctggcaaatccgttcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggcagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaacaccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaaattgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacagaaataattacttagaaggatttttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24535" stop="20706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24235" g_stop="23969" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23968" i_stop="23793" i_length="176">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23792" g_stop="23732" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="328" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="652" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="812" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21427" g_stop="21006" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1234" r_length="422" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U314191" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24235" e_stop="23969"/>
          <exon e_start="23792" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTG</genome_strand>
        <mrna_strand>ATTTCATCTTCTTTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGAGGTTAAAAAAACAGCTGGAAAGAAAGAAGAACAATGAAAGCTCTATTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAAATTTTCCACTGTTTTGCCACTTAAAGTCTCT................................................................................................................................................................................TAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCCTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCAGGATTTTCTTCTGGCAAATCCGTTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGCAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACACCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAATTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACAGAAATAATTACTTAGAAGGATTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324906" ref_strand="+" ref_description="SGN-U324906        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G60420.1 | Symbol: None | DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain | chr1:22265573-22268324 FORWARD | Aliases: T13D8.29, T13D8_29 (evalue: 0, score=650) genbank/nr: gi|51477394|gb|AAU04767.1| protein disulfide isomerase (PDI)-like protein 3 [Cucumis melo] (evalue: 0, score=670)">
      <seq>gactacaaaactttgttattaacatcaaaaaaaaaaaacacaaagagacaatggcaggggaaaattgtcatgatgtgatcaatctacttggttcttcagatcgtgactttcttattcgcaacaatggtgacaaggttaagcttgatactttaaaggagaaaaaaattggtttgtacttttcagcatcatggtgtggtccgtgcaaacatttcaccccaaatttggtagaggcgtacaatgctctcctaccaaaaggagactttgaagttgttttccttactactgatatggatgatgaatcttttaaggagtacttttctaaaatgccttggctcgctgtcccattctctgattctgaaacacgtaaacgtttgaatgaattgtttgctgttaggggaataccccacttagtgatccttgatgctagtgggaaggtagtgacaaatagcggggttgaaatcattgttgagcatggggtggagggctacccattcactcaagaacggctaaacgaacttaaagagcaagaagaaaccgctaaaagagaacagtctttgaaatctatcttggagtcacagtcaagaaactacgtaattgcggctgatggaaggaaggtacctgttgctgagcttgaaggcaagattataggcctatatatgtcaatggcttcttttgaagaatgtgaatcctttactgggaagctgatcgagatgtatgacaagttgaagtctcagggagaaaactttgagattgtcatgattcctcttgacgatgaagatgatgatgaatcttttaagaaagagttttcgagaatgccttggttttcacttcccttaaaagacaagacctgcaagaagctggccaggtactttgagctctctacccttcctaccctagtcatcattggaacagatgggaagactcttcattctaatgttgctgaagccgtcgaggagcatggtatcctggcatatccttttagccacgagaagtttgctgaacttgagcagatacagaaagctaaactggaagcacaaacgttggagtcgattttggttactagagatcgtgatttcgtcattggaaaagatggtgaaaagatcctcgtgtctgacctcgtagggaagactattctcctttacttctcagcacattggtgtcctccatgccgtgcttttacaccacagcttaaagaggcatatgagacgataaaatccaaaaatggtccattggaagtgatattcttatctagcgaccaagatcaagcctcatttgatgagtattttgctacaatgccatggctggctcttccgtttggtgatgagaggaagacatatttgagtcgcctattcaaagttcgtggcataccaacattggttgctgtagggccatcaggcaagactgttacaactgacgccagaagtttgatcatgtgtcatggtgctaaggcttttccattcaccgaggagcgtatggaggagattgaagcagaaactgcagagatggcaaaggggtggcctgagaaaattatgcacaaacttcacgagcatgaacttctgctttctaagcgttctgcttacaattgtgatgtatgcgaggagctgggacagatatggtcattctattgtgaagaatgtgactttgatatgcacccaaaatgtgctctagaagaggaaaaggaaagcaacatggacatcgaggaagatcaaaaggatcatatgcacccaaattatgctctagaagaggaaaaggaaagcaacatggatatcgaggaagatcaaaaggatcaaggcaaagaggaacagaaaacaaatgagggatggatttgtgatggtgaagtttgtttcaaaggttaatttgtcattatgtcttgttgactatgaggcatttgctgagcagcatatttgtgggttttgaaattgttctttgtgagacacttctatcctaaaatcttgtcacttctatgcaatactagttttattaaacgttggacctgtatttgatcctgatggtactgtctatctccatgtttatcgtctctatgagtcaagctatttgtgaaagataatgatattgatttgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38317" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38018" g_stop="37886" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31427" g_stop="30948" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="614" r_length="480" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30947" i_stop="30848" i_length="100">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30847" g_stop="30362" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="1100" r_length="486" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30198" g_stop="29219" g_length="980"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="2080" r_length="980" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2082" polyA_stop="2100"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U324906" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2079</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38018" e_stop="37886"/>
          <exon e_start="31427" e_stop="30948"/>
          <exon e_start="30847" e_stop="30362"/>
          <exon e_start="30198" e_stop="29219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACAAAACTTTGTTATTAACATC-AAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAGGTATCAATTGTTACATAAATTCTTTGTTTCTCTTATAGTGAAGTAATTTGTAGTACCTGATGTTGATAAATGATAATTTGGAGAATTTCGATGTAGTTTCTTGTTATTCTTTTGGTTTATGTATTCGTATATTGGGGGCGGAGCTAGGTAGAGCACACGATTTAGCACGGAAAATTATACTGTTTAAATATTTTTTTAATTATATATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGATAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAACTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGGGCAACAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAAATCTCCACTTTGACTTGAATTCTCCGAACAGATTCTTCAGACGCACTATGATAGTGCCAGGCCTCCCCCTCTTCCTCAGAGTTGCCCCGCAGGGCAATTAACAGCTTCTGATGTTGAGCAAGTCCAAACAGTGTTGAAACTTGCTCTGTGGAACCGGCTTTGTGAACATATCAGCAGGATTATCAGCAGTTCCTACTTTCTTCACCTTGATTCTCTTCTCACTTCTCAGAAAATGATACCTTACGTCAATATGCTTGGTTCTCTCATGATGGACTTGATCCTTGGCTAGACAAATTGCGCTCAAACTGTCACAATACACCGTAGCCTGATCATGATGCAGACCAAGATCACTAACCAGCCCTTTCAACCAAATCCCTTCTTTTGCAGCCTCTGTCAAGGCCATGTACTCCGCTTCCGTAGTAGACAAAGTCACTGTAGGTTGCAAAGTTGCCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGATCTTCTTATGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGAGTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTCTTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACTGCATGTGCTAAATCTGGCCTTGTAAAGACCATAGCATACATCAAACTTCCTACGGCACTGGCATAAGGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCAAACATGGCAGTGAGATGGATATTGGCAGCACTGGGGGTATCAATGGGCTTAGATGAAGACATGCCAAACCTCGCTAAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTGTCTCTAATGATCTCCATCCCTAAAATCTTCCGAGCGGCTCCCAGATCCTTCATCTCAAACTCAGCACTAAGTAAACCCTTCAGCTTCTGAATGTCATACTTCTTCTTTGCAGCTATCAACATATCATCTACATAAAGCACCAGATAGATGAATGAATCATCATTGAGCCTATTGTAGTAGACACAACAGTCATATGAGCTCCGAGTATAGCCTAACTTCACCATATAGCTGTCAAACCTTTTATACCACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACGTGATTTTCCTTCCCTGGAACTTGGAAACCATCCGGCTGAGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTGTTCAAGCTCCAGATTCTGATGTGCAACTATCGCTAGTAACACTCGGATGGAAGTATGTCTGACCACTGGTGAGAAGATCTCATTGTAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGCAACAACCCTGGCTTTATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAAAACCCATTTGCAAGTAATAATCTTTCTCCTCGAAGGCTGTATGACCAGATCCCATGTTTGATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCGGCAAACCATTTTTCAGAATCAGAACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGTATCTACCTCTTCAGCAACCTGCAGTGCATAACCCACCATGTCCTCAAAACCATACCTCGTAGGTGGCCGAACTCCAACCCTCCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATCAGTTTCTGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCGCTCTCGTTCTGAATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTAGTTGTAGGCTTCACAATGGTTCTAAGCAGAGAACTTTCATCAAAGACAACGTTCCTGCTCACAATAACCCTCTTTTCTGCTGGAGACCAGATTCTGAAACCTTTCACTCCATCTCCGTAGCCCACAAATACTCCCTTTTTAGCTCTTGGTTCTAACTTACCTTCACTAACGTGATAGTAAGCCGTACAACCAAAAGCTTTCAGATTTGAATAATCAGCAGCTTTTCCTGACCACATCTCCATAGGTGTCTTGCACTGTATGCCTGTATGTGGTCCGCGGTTAATCAAGTAGCAAGCTGTACTAACCGCTTCTGCCCAGAATCTTCTATCTAGCCCAGCATTAGAGAGCATGCACCTTGCTCTCTCTAGAAGTGTTTGATTCATCCGCTCAGCTACACCGTTCTGCTGTGGTGTATTTCTGACTGTACGATGTCGAGCAATCCCTTCATCCTTACAGAATTGATCAAATTCAGACCAACAGAATTCCAGCCCATTATCAGTTCGCAACCTCTTGATCTTCTTCCCTGTTTGATTTTCCATCAAAATTTTCCACTCCTTGAACTTCTGGAAGGCTTCACTTTTATGCTTCATCATGTACACCCAAGTCATCCTTGAGTAGTCATCAATAATGGACACAAAAAATCTGCAGCCTCCCAAAGACTCAACACGGCATGGACCCCAGCAATCAGAATGGATATAATCAAGTGTGCCTTTTGTTCTATGAATGGCCTTTGGAAACTTGTTGCGATGTAGTTTTCCAAAAACACAATGTTCACAAAACTCTAGGCTCTTAACCTTATGACCAGCAAGTAAATCCTCCTTTGACAGAATTTGCATCCCTCTTTCACCCATATGACCAAGTCTCATGTGCCATAACTTAGTCATATCCTTCTGGTGAAATTCTGACGATGCAACATGGGCTGAACCTGTAACCGTGGAACCTTGTAGAAAATACAAAGTACCACGCATGACACCTTTCAGAATCAAATTTGAACCCTTCCAGACCCGCAAGACTCCATCTTTTCCCGACCAGCTGAATCCCTTGCTGTCCAAAAGACTGAGAGATATCAGATTTTTCGTCATCAATGGAACGTGCCTGACCTCGTTCAATGTGCAGAAGCTACCGTCATGTGTCCTTATCTTGATCGAGCCTGTCCCAACCACCTTGCAGACAGAACTGTTGGCCATCGAGATGCTGCCTCCGTCTACCTACTCATAAGTCGTGAACCACTCTCTCCTAGGACAGATGTGATAGGATGCCCCAGAATCGAGAACCCACACATCTGAATGATGAGTGTGCTCATCCGCGACTAGGGCAATATCTTCTTCAGAATTGGTGTCTTCTTCAGCAACAGCAGCAGACACTGATTGTTTTTCCGATTGCTTCTTCTTCTTCGGACAATCAAATTTCCAATGTCCCTTCTCCTTGCAGTAATTACAAACATCATCCGGCTTTGCACCCTTCGACATCGGCTTATTTTTCTTTCCGCCGTTTTTCCTTCCCTTTCCGCTACTGGTGAGCAGACCGGAAGGCTGTATGTCCGTACTTGTGCCGTTAGCCTTATGCCGTAATTCCCTGCTATGAAGGGCCGATCTGACTTCTTCCAGTGACACAGTATCTTTCCCAACAATGAACGATTGAACAAAATTCTCAAACGACATTGGGAGAGATACTAACAGAATCAGGGCAGCATCTTCATCCTCGATCTTCACATCGATATTACGCAATTCTAATAACAAAGTATTCAATTGCTCTAAGTGTTCCCTGAGTTGTGTACCTTCAGCCATTCGTAAACCGAATAGACGTTGTTTCAGAAGCAGCTTGTTGGTTAGAGATTTTGTCATGTACAAACTCTCCAGCTTCAACCACAGACCAGCAGCAGTCTCTTCATCCGAGACCTCCGTGATGACGTCATCCGCGAGACACAGCATGATCGTCGAGTGCGCCTTTTCCTCCAGAATCGCCATCTCAGGAGTAACGACGGCGTTCTTGTCTTTCGACAACGGCGCCCAGAAGCCTTGCTGTTTCAACAAGGCCCGCATCTTGATCTGCCATAAACTGAAACTGTTCCTCCCTGTGAATTTGTCGATTTTCACGTTCAAAGCAGACATCTCGAATTCTCCAAGAACACCGATTAACCGAGAGGCTCTGATACCAATTTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGGGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCACCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTAGACCCCCCGACTCGCTGACCGGGCAGCAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAATATAAATAGCGGATGTTAAACTCTGCTTTTAACTTCTTATATTTATTTCTTCATAATTTGATTATTTAGTGAAATTTTAGGCTCGATTGTCGTGTGTTATGTAGATACTGAAAATCGATTTTCTCAAAAAGTAAAAATGATATGACTTGTGACAAAACAAAAGTAGAAATGATATGATTTATGACAGGAGAGGATCTAAGAAGCAAAAAGAGATGTCGGTATAATATGGAGTTTCTAATTCTCCCTTAAGGGGATGAAAAGATGTTTTGAAGTTTCAAAATAACTAATTCGGCTTTGTACGGTGTTGGTGATCTCACTTAATGAGCAAGCACTCACTAGTCACTATCTTAGTTTCTTCGATTCTCAGAGACCTCTGATTAAGGGTAGAGGGTGTGCTCGCATCTATTCCACCTAGTAAGACTTGTGGACTTCTTAAAGTTATCTAAGAAATGTTCTTATAAGATTGATCTAGGCCTTGGACAGTTTTTTGAGAACAGCCTCAAAAAGTTGTGAAAATTTGAAGGATGATCATTTTTTTTTACCGTGGTATCGGGGCTAATTTTTAATTCCATGGAATATCTGACACCTTCCACCAGCAACATGTACCAGATCACTCTATCCACCAAGGCTAAAACGGGTGGGAAGGATGATTACTTTTTAATACAAAGTTCTTCAAACTCAATTGTGTTTGTACTGGTTTGTTATTCAGAAAGGCATGATTATGATTTATAACCCGTTACTTTGCAAATCTATCTGCATTATTTACTCCACCTATGCTTTGGAAATGCTTACAACAATATCCATAAGTTTGTAACATTTAAAAGAGTAATTTTACTGTTTTAATGAAACAAGATGAAATGACTTATAGAGGGAACATAAGAACATGATAATAGGGACACATTAAATATGTAACAATTAAAAGAAAATGTAACATATATGCAATATTCAAGATTTAGCGAGAAATTGTGGAAGTAAGTTTGGTTGATCTTGGTTTCTTAATTTTTAAGTGGTTCAGAATTGGCTTGATTCGAAACCAAAAACATTATTTTGTTGTGCTTTTATTCTTTTATGGATGTTTCATTCTGTTTTGATTGAAAAAACCAAATAATTACTTGCTTGTTTCGAACAAAGTTGTAGGACCAGGCGGTCTGAAAATAGCTTTGCCTATCATTTCAAATATCATAATATGTTTGTAGTTATAAGGTATTTGAACATAAGAAAGTGAGGTGTATATGCATTGTTTTCCGTGTGCCTGACTTTTTAGTTTTACTGGTATAGACAGATATGTTAGGAAAGGAACAAGATGAATTTTGGAAATTATAGCTAGCTCTGATTAACAGATAATTTCATTTGTGGCATGTTTTTCACAAACGTTTAATTCTCAGGTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAGGTAGGGACACAAACATCACATTTTTGGTTATATTTTGTTTTCGTTCAATCTTTCGTCATCAATCATGCTTTGATTACTATACTATGATTAACATGACTGACCTTTCTGTTGATATTTACTCTTATCCCTAACTTCAACTAGTAACCAAAATTTCTCTTTGTAGATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAAATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</genome_strand>
        <mrna_strand>GACTACAAAACTTTGTTATTAACATCAAAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTGTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTACTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAG....................................................................................................GTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG...................................................................................................................................................................ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAGATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGACATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338108" ref_strand="+" ref_description="SGN-U338108        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G60420.1 | Symbol: None | DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain | chr1:22265573-22268324 FORWARD | Aliases: T13D8.29, T13D8_29 (evalue: 2e-29, score=125) genbank/nr: gi|51477394|gb|AAU04767.1| protein disulfide isomerase (PDI)-like protein 3 [Cucumis melo] (evalue: 2e-33, score=144)">
      <seq>ttttctaaaatgccttggctcgctgtcccattctctgattctgaaacacgtaaacgtttgaatgaattgtttgctgttaggggaataccccacttagtgatccttgatgctagtgggaaggtagtgacaaatagcggggttgaaatcattgttgagcatggggtggagggctacccattcactcaagaacggctaaacgaacttaaagagcaagaagaaaccgctaaaagagaacagtctttgaaatctatcttggagtcacagtcaagaaactacgtaattgcggctgatggaaggaaggttgattcaagatgctgctcttctctccttcatttcatactcttgtttattaataaaagtttccctcattacttttttgctgtgtcttgataattatcaggtacctgttgctgagcttgaaggcaagattataggcctatatatgtcaatggcttcttttgaagaatgtgaatcctttactgggaagctgatcgagatgtatgacaagttgaagtctcagggagaaaactttgagattgtcatgattcctcttgacgatgaagatgatgatgaatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31547" stop="30367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31247" g_stop="30667" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U338108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31247" e_stop="30667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTA</genome_strand>
        <mrna_strand>TTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35071" stop="36319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35371" g_stop="36019" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35371" e_stop="36019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAAACATGGGATCTGGTCATACAGCCTTCGAGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35730" stop="37137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36030" g_stop="36837" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36030" e_stop="36837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTAGGCTATACTCGGAGCTCATATGACTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTAGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTTGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTTTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACATAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330252" ref_strand="+" ref_description="SGN-U330252        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ccaactgttaatccagcttcaggctacagcctcattcccaatcacctgcctcctaattttccaatggctcatcacaatggttattatgtgtatccaccaccagtggacaacagttataggcagggggatgcatcaagtggaagcacttctcatgagtttgcagtggctgctgtggatcgtgacgttgagtctcctgcggaaaagagtgacgactgatcagtttctgatctgccgaaggaattgagccttacctgaaacttcaagattagtgaaaataagtagactatctttctctgttacataatttgagacctctagacaatcaagtatagttctttgtgaagtttaggaatgttccttcgaactaagcgagccaaatggtggccctcttaattggctgtttaattttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63537" stop="62526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63237" g_stop="62831" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="422"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U330252" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63237" e_stop="62831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGGTTAATCCATCTTCAGGCTACAGCCTCATGCCCAATCACCTGCCTCCTAATTTTTCAATGGCTAATCACAATGGTTATTATGTGTATCCACCACCAATAGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGCGTGTGCAGTGGCTGCTGTGGATGGTGACGTTAAGTCTCCTGCGGAAAAGAGTGAGGAGTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAA-AAGTAGACTATCTTTCTCTGTTACATAATTTGAGAACTATTGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</genome_strand>
        <mrna_strand>CCAACTGTTAATCCAGCTTCAGGCTACAGCCTCATTCCCAATCACCTGCCTCCTAATTTTCCAATGGCTCATCACAATGGTTATTATGTGTATCCACCACCAGTGGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGAGTTTGCAGTGGCTGCTGTGGATCGTGACGTTGAGTCTCCTGCGGAAAAGAGTGACGACTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAATAAGTAGACTATCTTTCTCTGTTACATAATTTGAGACCTCTAGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80973" stop="79928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80673" g_stop="80233" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80673" e_stop="80233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAATAGTTTAATTTTTTATTCTTTAAATGAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAACAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTT--AAAAAAATTAGAAATAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACAC-AAAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345867" ref_strand="+" ref_description="SGN-U345867        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G47670.1 | Symbol: None | CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L), supporting cDNA gi:27372446:gb:AY138461.1:; contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone; contains similarity to CCAAT-binding transcription factor subunit A (CBF-A) (NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding protein subunit B) (Swiss-Prot:P25209) (Zea mays) | chr5:19332287-19333616 FORWARD | Aliases: MNJ7.26, MNJ7_26 (evalue: 2e-28, score=123) genbank/nr: gi|58737219|emb|CAI48078.1| leafy cotyledon 1-like protein [Helianthus annuus] >gi|55859472|emb|CAI05932.1| leafy cotyledon 1-like protein [Helianthus annuus] (evalue: 3e-32, score=142)">
      <seq>gaaatattagagagagaaagagatggatggtggttcaggaaatggaggatttcatagctatcgcagatctccacaaccaacccctgcagatcccccttcctctgatgtggagatgagcctggaactgcctgcacatctcaaccaggaagttgatgaaatcatcagtcaggagcaagacgaagtcataccaaacgtggccagaatcatgcatagcacccatccttcccatgtcaagatatccgatgacgccaaacggaccatgtaccattgtatgtctgagttcatatgctttgtaacatacgaagccaacacgcattgccagcgtgagcagcggaacacaatcactgttgaagacgtggattgggtcattaacaagtttgggtttgatgactacattgaacccttgccttactactttcctccaaatagtgaggatgatggtggcgagtgtggatctcttacaagggagtctttgttgaagtgtccaatggttgatacagcttcaagctccaatatcacaccctatagcgttcctcctaattttcctatggctcatcaccactttgtgtatccaccaccaatgggaaatggtgatatgcagggggaggcaagcacttctcagtatgcaggggtttcagtggatactgacgttgagtctcctatggaggaggataaggagtgaacaatttatcgatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95049" stop="92540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94749" g_stop="94646" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94645" i_stop="93437" i_length="1209">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93436" g_stop="92840" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="701" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U345867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94749" e_stop="94646"/>
          <exon e_start="93436" e_stop="92840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTGGTATGTTACCTATCTTCTCTTTTACTATTTACAAGTGATTTCTCTCTCTCTCTCTATATATATATGTATGGTTGGAATGTTCATATGATTTTTTATATTTGATATGCTTACTGAAGCCGAGCGTTTCTATTAAAATCAATCTCACAAGGTAAGTAGGGGAAAGGCTATGTACATATCGCACTTCCAGATTTATTTAGGGAATTATATATACTGATTACTGGACACATCCTCGTTGTTGTTGAATATTCATGAAGCTTTGTGCACACAGTTAATTTGGGCTGCTAGTTAATAATTTTTATTAATTCCTCTGAATTTTTCATCTTCTTCTTCAGCTCTGTTGAGTTTGGAAGATAATAAAAAAGGAGAGCTGCAGCTCATGTACATTTCTTGGCTTGCTCTATGTCCGTCTTTAATTAGCTAGGGACCATATTTGCATTTTTTCCCATACATATATTTGCAAAGCTATCAAAGATGAAGATCAATTCATGGTAATGGTGATCGACACGGCATTTCTGGTTTTCTTTTGGAACTTGAAAGAAAAAAATGGAAACAAGTGGCATGCATGCAATCTTGTTTATGTCCTCTCCACCGCTTTTTACGCGTGACTCACCTCTAAAAAAAATATTAAAAAGAGAGAGGAAGAAACAAACCGTCTAACGCTAGCAAGTTTGAAAATCAGTTAGCTATATTACATAAATTAAAGGCTTTAATTATGACATAAAAATTGCCTAAATTGTCAGTTACATGAAAATTGTATCTTATTCCGATTTCACGGTTATGGTAAAAGAAAAAGCCTTCTGATTCGAGGCAAGTTTGGATATATGCGAGAGTTAGTCGTTGAAGATTAGACAAAGTAAGATAGATGCTGAAAACTAAATATGAAGTGTTTTATATGTTACTTTTCTCGGTCTTTATTCACACTGATTATATAATATATGTTTTTGGAGTTCACATTAATAATGTCCAAAATTCATAGTGCCGTCTTACAGTACGACTCTCATATCCAGCTAATAATTAGTGAACTATATATTTATGTGTGCCGTTTTGTAATTTCTTCAATACTTGGGTAGGTAATAGCAAATGTTACTTAATAATGATTCATTAGACGATAAAAGGTATAGATGTGATGAAATTAGACAAATATTTTGATGATATAGACCACACTTCTTTTAATTTCACTCTGGTGCTTTTTTGTTGTATGAAATTAAGATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</genome_strand>
        <mrna_strand>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343013" ref_strand="+" ref_description="SGN-U343013        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G46730.1 | Symbol: None | disease resistance protein (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. | chr3:17224054-17226597 REVERSE | Aliases: T6H20.240 (evalue: 5e-31, score=131) genbank/nr: gi|53689738|gb|AAU89751.1| P0431G06.4-like [Solanum tuberosum] (evalue: 1e-70, score=269)">
      <seq>aatgttgtgtatctcaagtatatacacgtaaagacttgttactaaccattcttcggagtgttaagaaggatatagttatcagtgataaactaccagagaatgaattagcagataagttgcgtaaacttctatttggtcagaggtaccttatcctcattgatgatgtctgggaaactactgcatgtgatgaactaatgccatgcttctatgatgccaataatggaagtagacttatcctgacaactcgccatgatcatgttgcctaccatgctaaactcgttagtgatcctcattttcttcgaaaatttactctagaagaaagttggatgctattgaagaataaagtgttcaatgaaaaatgttgccctgtagtcttagaagatgttggccaaaagatagcacaaaagtgtggtgggctacctctttcagttgtcctggtagcaggtattctcgaaacgatggagaaggaggaacattgttgggaacaagttgcaataaatttaggtccacatatccaggctaagtcagaggatataataaatcttagttaccaagatttaccatttcatttgaaaccttgctttttgtattttggagtactttcggaagatgaagagataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112364" stop="111142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112064" g_stop="111442" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U343013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112064" e_stop="111442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</genome_strand>
        <mrna_strand>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115055" stop="114096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114815" g_stop="114393" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="425" r_length="422" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114815" e_stop="114393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTC-GAAGTTCAGCCCAAACAGCCAACTTTAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATATTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCATTGTTTGGCAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTTACTCTTCACATCGAAGGGTTTTCCATGTAAATCTTGGCG</genome_strand>
        <mrna_strand>TTTCAGAGAGAGTTTTT-CAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGG-TTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340874" ref_strand="+" ref_description="SGN-U340874        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttagtcgaactactgaactcaatcacttgttatttactctacaattttctatcaaggctcgtcctacgtcctacctaccctaacataatcgtcacgacccaaaattatcaagaaaatggatcaattgcaaccacaacaaccagttcaagtttatcctaacaatccaaacaatttccctaaccaaccaaacaatatgccaatgactcaatcctcttcttctcataactcatccaatggttcatttgtgagtgtttttgttgtcctagctattgtttttgtcatatctgttattgcttgtgttgtgggacgtttatgtagcaagaaaagcaatggagctaataaggtgaagaaaagtagtcatggtcaaccacaaaaacaaaaagagggaaaacataataataataataagcacaatgagtttcacaataaaagaggaggaggggatatagaatttggatttgataagaaaattgcaagttctaaagtggctgcagcacatggagataatcattataaggggtctaagcctcataagaatactaatggaggagttagattttctgataatcatattgatttcaagcttggtccatgaaaactagttgtgttcatagaggaactctctctatgtactaattactttggtagtagttttaattttattttgttaaatttttaagtttttattaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125140" stop="126433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125440" g_stop="126133" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-U340874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125440" e_stop="126133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</genome_strand>
        <mrna_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4917" PGL_stop="4077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4917" e_stop="4077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4917" e_stop="4077" e_length="841"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4917" stop="4077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAATTACCTGTGATTTTTGTTGTTTAGCTAGGAAAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</gDNA_template>
            <first_frame> F  N  S  S  F  L  I  F  F  L  R  F  E  N  Q  L  G  Y  I  P  K  Q  Y  I  K  L  G  S  R  *  Y  I  *  L  H  K  S  F  I  F  V  L  F  Y  L  D  S  F  V  F  V  R  *  D  G  R  Y  M  G  *  R  K  I  G  G  N  *  S  E  *  T  G  E  N  E  D  H  R  A  K  D  T  I  S  S  P  *  N  *  *  *  *  *  F  *  G  I  *  Q  S  *  R  *  S  G  *  *  H  G  I  V  F  K  *  K  *  I  *  *  S  S  *  E  *  *  *  *  R  C  C  Y  G  S  C  *  *  R  F  R  R  I  G  E  E  K  E  F  H  R  A  *  K  R  S  L  *  *  I  Q  E  N  Q  R  A  T  K  E  W  I  S  S  R  R  I  *  R  *  *  *  *  *  *  *  *  *  C  Y  *  *  W  C  *  G  H  K  N  *  G  R  K  G  K  H  F  N  I  V  I  L  F  S  *  I  L  C  F  F  S  L  R  F  N  H  F  G  K  H  V  I  S  *  R  I  Y  P  *  S  L  A  N  L  S  L  N  S  S  *  L  I  R  F  Y  V  N  L  S  L  N  E  I  T  C  D  F  C  C  L  A  R  K  I  Y  E  *  L  I  S  C  F  L  </first_frame>
            <second_frame>  L  T  H  H  S  S  F  S  F  F  D  L  R  I  N  W  D  I  F  P  N  N  T  L  N  *  V  V  D  N  I  F  D  Y  I  N  H  L  Y  S  F  C  S  I  *  I  H  L  Y  L  Y  A  K  M  G  V  I  W  D  E  E  K  L  E  E  I  E  A  N  K  P  V  R  M  K  I  T  E  P  K  T  P  Y  H  R  P  K  I  D  D  N  D  N  F  E  E  Y  N  N  R  S  D  E  V  D  D  D  M  A  S  C  S  S  K  S  R  S  D  D  P  R  K  N  N  D  N  D  V  V  V  M  D  H  A  D  E  D  S  D  E  S  E  R  K  R  N  F  I  E  H  R  R  G  H  Y  D  E  Y  K  R  I  K  E  L  Q  R  N  G  S  L  L  E  E  F  D  D  D  D  N  D  D  D  N  N  N  V  I  D  D  G  V  K  G  I  K  I  E  E  E  K  E  N  T  S  T  *  S  S  Y  F  H  E  Y  C  V  F  F  L  F  D  L  I  I  L  E  N  M  *  L  A  K  E  F  I  R  N  L  *  L  I  C  R  *  I  A  P  S  *  L  D  F  M  L  I  Y  R  S  M  K  L  P  V  I  F  V  V  *  L  G  K  F  M  S  S  *  F  L  V  F  L </second_frame>
            <third_frame>   *  L  I  I  P  H  F  L  S  S  I  *  E  S  I  G  I  Y  S  Q  T  I  H  *  T  R  *  S  I  I  Y  L  I  T  *  I  I  Y  I  R  F  V  L  F  R  F  I  C  I  C  T  L  R  W  A  L  Y  G  M  K  K  N  W  R  K  L  K  R  I  N  R  *  E  *  R  S  P  S  Q  R  H  H  I  I  A  L  K  L  M  I  M  I  I  L  R  N  I  T  I  V  A  M  K  W  M  M  T  W  H  R  V  Q  V  K  V  D  L  M  I  L  V  R  I  M  I  M  T  L  L  L  W  I  M  L  M  K  I  P  T  N  R  R  G  K  G  I  S  *  S  I  E  E  V  I  M  M  N  T  R  E  S  K  S  Y  K  G  M  D  L  F  S  K  N  L  T  M  M  I  M  M  M  I  I  I  M  L  L  M  M  V  L  R  A  *  K  L  R  K  K  R  K  T  L  Q  H  S  H  L  I  F  M  N  I  V  F  F  F  S  S  I  *  S  F  W  K  T  C  N  *  L  K  N  L  S  V  I  S  S  *  S  V  A  K  *  L  L  A  N  *  I  L  C  *  S  I  A  Q  *  N  Y  L  *  F  L  L  F  S  *  E  N  L  *  V  A  N  F  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4781" stop="4299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHLYLYAKMGVIWDEEKLEEIEANKPVRMKITEPKTPYHRPKIDDNDNFEEYNNRSDEVDDDMASCSSKSRSDDPRKNNDNDVVVMDHADEDSDESERKRNFIEHRRGHYDEYKRIKELQRNGSLLEEFDDDDNDDDNNNVIDDGVKGIKIEEEKENTST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8269" PGL_stop="5490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8269" e_stop="8165"/>
            <exon e_start="7963" e_stop="7745"/>
            <exon e_start="5995" e_stop="5490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.604" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8269" e_stop="8165" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7963" e_stop="7745" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.604">
            <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="5995" e_stop="5490" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8269" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG : GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG : TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGAC</gDNA_template>
            <first_frame> *  Y  L  V  L  S  S  K  P  K  P  H  S  V  F  L  L  P  I  *  I  S  R  R  I  L  R  S  Q  F  F  S  S  I  Q  :  V  *  N  K  K  W  V  N  Q  R  S  N  N  Q  F  S  L  R  L  I  S  L  G  Q  R  L  L  G  *  I  L  L  *  R  W  L  I  Q  R  W  *  C  Q  G  E  I  K  A  V  R  C  D  W  L  N  A  W  L  V  M  R  Q  G  *  S  F  S  L  L  E  M  I  K  :  S  T  *  *  K  K  V  L  L  *  F  C  A  M  Q  K  *  I  C  S  R  D  Q  *  G  L  Q  W  T  G  G  D  V  L  K  L  P  N  L  L  V  S  L  S  R  K  T  V  I  C  L  L  S  S  L  N  K  *  L  L  L  N  S  N  S  R  Q  P  I  A  M  I  M  S  R  L  Q  R  V  *  V  S  L  V  L  *  G  Y  A  N  V  P  S  S  V  K  V  K  T  T  C  F  V  K  S  E  S  S  L  L  F  F  V  V  E  V  F  V  D  S  K  V  C  S  C  N  K  Q  *  C  T  T  C  L  F  I  Y  L  E  G  L  C  S  H  H  R  T  Y  F  I  W  C  L  S  *  L  F  F  F  N  N  R  E  I  F  E  G  Q   </first_frame>
            <second_frame>  D  I  *  F  S  R  Q  N  Q  S  P  I  L  F  S  Y  F  Q  S  E  S  P  E  E  Y  S  D  L  N  F  S  L  Q  F  R :   F  K  I  K  N  G  *  T  K  E  A  T  T  S  F  H  *  G  *  S  A  *  A  N  G  Y  W  A  K  S  Y  C  E  G  G  *  Y  K  D  G  S  A  K  G  K  S  R  P  S  D  A  I  G  *  M  L  G  W  *  *  D  R  D  D  H  F  H  C  *  K  *  S  S :   R  H  D  E  R  R  C  Y  C  N  S  A  Q  C  K  N  R  Y  V  Q  G  I  N  E  A  C  S  G  Q  V  G  T  Y  *  S  Y  R  T  C  *  F  L  C  Q  G  R  Q  *  S  V  S  Y  R  V  *  T  S  D  C  C  *  T  V  T  Q  D  S  P  S  L  *  *  C  P  V  C  R  E  Y  K  *  V  W  F  F  R  D  M  L  M  S  L  H  Q  L  K  *  K  L  L  V  L  L  S  Q  K  V  L  F  F  F  L  *  W  K  F  L  *  I  A  R  Y  V  A  A  I  N  S  S  V  Q  L  A  C  L  F  I  W  K  D  C  V  A  T  I  E  L  T  L  S  G  A  Y  H  N  F  F  F  L  I  I  E  K  F  L  R  A  R  </second_frame>
            <third_frame>   I  F  S  S  L  V  K  T  K  A  P  F  C  F  P  T  S  N  L  N  L  Q  K  N  T  Q  I  S  I  F  L  F  N  S   : G  L  K  *  K  M  G  E  P  K  K  Q  Q  P  V  F  T  K  V  D  Q  L  R  P  T  A  T  G  L  N  L  T  V  K  V  V  N  T  K  M  V  V  P  R  G  N  Q  G  R  Q  M  R  L  A  E  C  L  V  G  D  E  T  G  M  I  I  F  T  A  R  N  D  Q   : V  D  M  M  K  E  G  A  T  V  I  L  R  N  A  K  I  D  M  F  K  G  S  M  R  L  A  V  D  R  W  G  R  I  E  V  T  E  P  A  S  F  S  V  K  E  D  S  N  L  S  L  I  E  F  E  Q  V  T  V  V  E  Q  *  L  K  T  A  H  R  Y  D  N  V  P  F  A  E  S  I  S  K  F  G  S  L  G  I  C  *  C  P  F  I  S  *  S  K  N  Y  L  F  C  *  V  R  K  F  S  S  F  F  C  S  G  S  F  C  R  *  Q  G  M  *  L  Q  *  T  V  V  Y  N  L  L  V  Y  L  F  G  R  I  V  *  P  P  *  N  L  L  Y  L  V  L  I  I  T  F  F  F  *  *  S  R  N  F  *  G  P  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7952" stop="7745"/>
                    <exon start="5995" stop="5805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGEPKKQQPVFTKVDQLRPTATGLNLTVKVVNTKMVVPRGNQGRQMRLAECLVGDETGMIIFTARNDQVDMMKEGATVILRNAKIDMFKGSMRLAVDRWGRIEVTEPASFSVKEDSNLSLIEFEQVTVVEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14988" PGL_stop="24071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14988" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20390"/>
            <exon e_start="20559" e_stop="20636"/>
            <exon e_start="20812" e_stop="20851"/>
            <exon e_start="20976" e_stop="21000"/>
            <exon e_start="21667" e_stop="21674"/>
            <exon e_start="21831" e_stop="21851"/>
            <exon e_start="22077" e_stop="22127"/>
            <exon e_start="23542" e_stop="23715"/>
            <exon e_start="24055" e_stop="24071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.991"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.999" acc_prob="0.317" e_score="0.575"/>
          <exon-intron don_prob="0.905" acc_prob="0.000" e_score="0.520"/>
          <exon-intron don_prob="0.313" acc_prob="0.284" e_score="0.750"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.762"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.569"/>
          <exon-intron don_prob="0.000" acc_prob="0.819" e_score="0.517"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14988" e_stop="15272" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="20057" e_stop="20390" e_length="334"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20391" i_stop="20558" i_length="168"/>
          </intron>
          <exon e_serial="10" e_score="0.500">
            <gDNA_exon_boundary e_start="20559" e_stop="20636" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20637" i_stop="20811" i_length="175"/>
          </intron>
          <exon e_serial="11" e_score="0.575">
            <gDNA_exon_boundary e_start="20812" e_stop="20851" e_length="40"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.317">
            <gDNA_intron_boundary i_start="20852" i_stop="20975" i_length="124"/>
          </intron>
          <exon e_serial="12" e_score="0.520">
            <gDNA_exon_boundary e_start="20976" e_stop="21000" e_length="25"/>
          </exon>
          <intron i_serial="12" don_prob="0.905" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21001" i_stop="21666" i_length="666"/>
          </intron>
          <exon e_serial="13" e_score="0.750">
            <gDNA_exon_boundary e_start="21667" e_stop="21674" e_length="8"/>
          </exon>
          <intron i_serial="13" don_prob="0.313" acc_prob="0.284">
            <gDNA_intron_boundary i_start="21675" i_stop="21830" i_length="156"/>
          </intron>
          <exon e_serial="14" e_score="0.762">
            <gDNA_exon_boundary e_start="21831" e_stop="21851" e_length="21"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21852" i_stop="22076" i_length="225"/>
          </intron>
          <exon e_serial="15" e_score="0.569">
            <gDNA_exon_boundary e_start="22077" e_stop="22127" e_length="51"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22128" i_stop="23541" i_length="1414"/>
          </intron>
          <exon e_serial="16" e_score="0.517">
            <gDNA_exon_boundary e_start="23542" e_stop="23715" e_length="174"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.819">
            <gDNA_intron_boundary i_start="23716" i_stop="24054" i_length="339"/>
          </intron>
          <exon e_serial="17" e_score="0.706">
            <gDNA_exon_boundary e_start="24055" e_stop="24071" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20390"/>
              <exon start="20559" stop="20636"/>
              <exon start="20812" stop="20851"/>
              <exon start="20976" stop="21000"/>
              <exon start="21667" stop="21674"/>
              <exon start="21831" stop="21851"/>
              <exon start="22077" stop="22127"/>
              <exon start="23542" stop="23715"/>
              <exon start="24055" stop="24071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTA : AAACAATGAAAAGAAGAAAATCGAGTTCGTTGAATGAAAAGTTAAACATGTTCTTTGTCTTGGTCTCAACTGATATCT : AATGCTTATTGGTGCACACCTAAAGCTGGATGACATAGTT : TTGGTAAAACCATGTCTAAGAAAGA : CTATTTAT : TTACCTATGTGTTATGTTAAA : CTGCATAACAGAAAAAACACGACACATCAGCTTCTATTTTTAGCAGCAGGG : ACTAGTAGTGACCACTGTAGTCATTAACTGAAATAAACACGAAAAATAGTTGAACGTCCTCTGTGCTGAAATCCAAGGAGAAAAGCTGCACTAACACTATAACACAAGTGATAAGAAATGCAAATTTACAATTCAAAAATGGAATTCAAGCCTAACTCAAAGATAACAAGAAAA : AAATAGAAGAAAATGGA</gDNA_template>
            <first_frame> I  P  P  *  Q  M  G  D  V  P  S  I  K  A  L  N  I  H  K  I  K  I  S  I  *  L  K  K  I  F  S  K  F  Q  F  R  Y  I  K  Y  L  S  I  P  K  S  L  F  Y  K  Y  S  L  *  *  S  F  T  T  Q  R  T  *  V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S   : K  T  M  K  R  R  K  S  S  S  L  N  E  K  L  N  M  F  F  V  L  V  S  T  D  I   : *  C  L  L  V  H  T  *  S  W  M  T  *  F :   W  *  N  H  V  *  E  R  :  L  F  I :   Y  L  C  V  M  L  N :   C  I  T  E  K  T  R  H  I  S  F  Y  F  *  Q  Q  G :   L  V  V  T  T  V  V  I  N  *  N  K  H  E  K  *  L  N  V  L  C  A  E  I  Q  G  E  K  L  H  *  H  Y  N  T  S  D  K  K  C  K  F  T  I  Q  K  W  N  S  S  L  T  Q  R  *  Q  E  K :   N  R  R  K  W  </first_frame>
            <second_frame>  F  L  H  N  K  W  V  T  F  H  P  L  R  R  *  I  F  I  K  L  K  F  Q  Y  N  *  R  K  F  F  P  N  F  N  L  D  I  *  N  I  Y  P  Y  P  N  L  F  S  I  N  T  P  C  N  S  P  S  Q  H  K  E  R  E  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  :  K  Q  *  K  E  E  N  R  V  R  *  M  K  S  *  T  C  S  L  S  W  S  Q  L  I  S  :  N  A  Y  W  C  T  P  K  A  G  *  H  S   : F  G  K  T  M  S  K  K  D :   Y  L   : F  T  Y  V  L  C  *   : T  A  *  Q  K  K  H  D  T  S  A  S  I  F  S  S  R   : D  *  *  *  P  L  *  S  L  T  E  I  N  T  K  N  S  *  T  S  S  V  L  K  S  K  E  K  S  C  T  N  T  I  T  Q  V  I  R  N  A  N  L  Q  F  K  N  G  I  Q  A  *  L  K  D  N  K  K   : K  I  E  E  N  G </second_frame>
            <third_frame>   S  S  I  T  N  G  *  R  S  I  H  *  G  V  E  Y  S  *  N  *  N  F  N  I  I  K  E  N  F  F  Q  I  S  I  *  I  Y  K  I  F  I  H  T  Q  I  S  F  L  *  I  L  L  V  I  V  L  H  N  T  K  N  V  S  L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  * :   N  N  E  K  K  K  I  E  F  V  E  *  K  V  K  H  V  L  C  L  G  L  N  *  Y  L :   M  L  I  G  A  H  L  K  L  D  D  I  V  :  L  V  K  P  C  L  R  K   : T  I  Y  :  L  P  M  C  Y  V  K  :  L  H  N  R  K  N  T  T  H  Q  L  L  F  L  A  A  G  :  T  S  S  D  H  C  S  H  *  L  K  *  T  R  K  I  V  E  R  P  L  C  *  N  P  R  R  K  A  A  L  T  L  *  H  K  *  *  E  M  Q  I  Y  N  S  K  M  E  F  K  P  N  S  K  I  T  R  K  :  K  *  K  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15225" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15665" e_stop="15693"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="1.000" e_score="0.448"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.759"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15225" e_stop="15272" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15664" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.448">
            <gDNA_exon_boundary e_start="15665" e_stop="15693" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15694" i_stop="15747" i_length="54"/>
          </intron>
          <exon e_serial="4" e_score="0.759">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15225" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15665" stop="15693"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGTCTACATTACACTGGGTCCCACACGGA : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG</gDNA_template>
            <first_frame> L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   V  Y  I  T  L  G  P  T  R   : M  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K  </first_frame>
            <second_frame>  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  S  T  L  H  W  V  P  H  G  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K </second_frame>
            <third_frame>   S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  C  L  H  Y  T  G  S  H  T  D :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15227" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15665" stop="15693"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19158"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIINENDFIFYQSRGYENGGRFIRRRHCRTEKASQCLHYTGSHTDEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15195" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18124"/>
            <exon e_start="19104" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.923"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="15195" e_stop="15272" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18124" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="18125" i_stop="19103" i_length="979"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="19104" e_stop="19160" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20057" e_stop="20376" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18124"/>
              <exon start="19104" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAG : CTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAG</gDNA_template>
            <first_frame> K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A   : A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  </first_frame>
            <second_frame>  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  :  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  * </second_frame>
            <third_frame>   A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S :   C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15195" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18124"/>
                    <exon start="19104" stop="19160"/>
                    <exon start="19619" stop="19641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAAVVEVLKDLCLFLMMGPLKVISLRNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15177" e_stop="15272"/>
            <exon e_start="15442" e_stop="15495"/>
            <exon e_start="15830" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15177" e_stop="15272" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15495" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15496" i_stop="15829" i_length="334"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15830" e_stop="15888" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="20057" e_stop="20323" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15272"/>
              <exon start="15442" stop="15495"/>
              <exon start="15830" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAG : TCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</gDNA_template>
            <first_frame> V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  :  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T </first_frame>
            <second_frame>  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S :   P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q   </second_frame>
            <third_frame>   L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K   : V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15495"/>
                    <exon start="15830" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24508" PGL_stop="20922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24508" e_stop="23732"/>
            <exon e_start="22912" e_stop="22589"/>
            <exon e_start="22076" e_stop="21917"/>
            <exon e_start="21427" e_stop="20922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.999"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="24508" e_stop="23732" e_length="777"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22912" e_stop="22589" e_length="324"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22076" e_stop="21917" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.970">
            <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21427" e_stop="20922" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24508" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="20922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAGAGTGACCATTTCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA : ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG : CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG : GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</gDNA_template>
            <first_frame> T  R  V  T  I  S  K  V  *  N  F  L  H  I  L  S  L  N  *  S  F  L  K  *  F  Y  V  S  P  Q  L  M  L  V  F  C  V  L  N  A  L  F  S  L  W  L  L  I  S  L  W  P  H  Q  K  Q  G  K  L  *  G  Q  D  I  P  N  H  Y  F  T  N  K  W  M  A  E  N  E  F  Y  P  K  K  R  K  *  K  P  K  S  I  I  S  S  Y  L  S  C  T  *  I  V  *  G  K  Y  *  V  R  G  K  K  T  S  W  K  E  R  R  T  M  E  A  L  L  S  S  T  T  L  Q  L  K  P  L  H  P  P  S  S  F  S  S  L  H  S  P  F  S  S  I  S  V  L  R  V  K  G  S  K  K  A  E  T  F  I  Q  R  S  N  F  S  T  V  L  P  L  R  V  S  A  S  S  Q  A  A  A  A  E  T  S  T  S  I  S  I  P  S  E  M  K  A  W  S  Y  T  D  Y  G  S  V  D  V  L  K  L  E  S  N  V  A  V  P  D  I  K  E  D  Q  V  L  I  K  I  V  A  A  A  L  N  P  V  D  F  K  R  R  L  G  K  F  K  A  T  D  S  P  L  P  :  T  V  P  G  Y  D  V  A  G  V  V  V  K  V  G  S  Q  V  K  G  L  K  E  G  D  E  V  Y  G  D  I  H  E  K  A  L  D  G  P  K  Q  F  G  S  L  A  E  Y  T  A  V  E  E  K  L  V  A  L  K  P  K  N  L  S  F  A  E  A  A  A  L  P  L  A  I  E  T  A  Y  E  G  L  E  K  A  G  F  S  S  G  K  S  I  L  V  L  G  G  A  G  G  V  G  S  L  V  I  Q  :  L  A  K  H  V  F  G  A  S  K  V  A  A  T  S  S  T  G  K  L  E  L  L  K  S  L  G  A  D  L  A  I  D  Y  T  K  E  N  F  E  D  L  P  D  K  F  D  V  V  Y  D  S  V   : G  Q  G  E  K  A  V  K  V  V  K  E  G  G  S  V  V  V  L  T  G  A  V  T  P  P  G  F  R  F  V  V  T  S  N  G  E  M  L  K  K  L  N  P  Y  L  E  S  G  K  V  K  P  V  I  D  P  K  G  P  F  S  F  D  K  V  V  D  A  F  S  Y  L  E  T  G  R  A  T  G  K  V  V  I  H  P  I  P  *  K  L  A  L  I  L  Y  N  F  *  Y  I  *  G  K  G  E  V  F  V  P  Q  S  L  L  W  H  V  V  D  E  N  K  M  Y  L  C  *  S  C  W  T  H  K  *  L  L  R  R  I  F  V  F  T  L  S  *  T  W  F  Y  Q  L  L  N  P  *  Q  I  E  F  *  K  N  E  T  C  F  H  E </first_frame>
            <second_frame>  L  E  *  P  F  Q  K  Y  K  I  F  F  I  F  L  A  *  T  R  V  S  *  S  S  S  T  F  H  H  N  S  C  *  Y  F  V  S  *  M  L  F  L  V  C  G  Y  *  F  P  Y  G  L  I  K  N  R  E  N  Y  E  D  K  I  F  Q  I  T  I  L  L  T  N  G  W  L  K  M  N  S  T  Q  K  K  E  N  R  S  Q  N  Q  S  F  H  L  I  Y  H  A  H  K  L  F  E  E  N  T  E  *  G  V  K  K  P  A  G  K  K  E  E  Q  W  K  L  C  Y  L  P  L  L  F  N  S  N  P  F  I  H  P  L  L  S  L  L  F  T  L  H  F  L  L  F  L  F  L  E  *  R  V  A  K  K  L  K  L  L  F  K  E  A  I  F  P  L  F  C  H  L  E  S  L  L  V  L  K  Q  Q  L  L  K  H  P  Q  A  F  L  F  L  L  K  *  K  L  G  V  I  L  I  M  E  V  L  M  F  *  S  W  S  P  M  L  Q  F  L  T  L  R  K  I  K  S  *  L  R  L  L  L  L  L  L  T  L  L  I  L  N  D  G  S  E  N  L  R  P  L  I  L  H  F  Q :   L  C  Q  V  M  M  L  L  V  W  *  *  K  L  V  V  R  *  R  D  *  K  K  G  M  K  Y  M  E  I  Y  M  R  K  H  *  M  D  Q  S  N  L  D  P  *  L  S  T  L  L  L  K  R  N  *  L  L  *  N  P  R  I  L  V  L  R  R  L  L  L  F  L  *  L  L  R  L  L  M  K  V  L  R  K  L  D  F  L  L  A  N  P  F  L  F  W  E  V  L  A  V  L  D  P  *  *  S  S :   L  L  N  M  Y  L  V  L  L  K  *  Q  L  P  L  A  Q  G  S  W  N  S  *  K  A  *  E  L  I  *  L  L  T  T  L  R  R  I  L  K  I  C  L  T  S  L  M  L  F  M  I  Q  L  :  V  R  V  K  R  R  *  R  *  *  R  K  V  G  V  W  *  C  *  Q  G  Q  *  L  H  Q  V  L  D  L  W  *  H  Q  M  E  R  C  *  R  N  *  T  H  T  W  K  V  G  R  *  N  Q  *  *  I  Q  R  D  H  S  H  L  I  R  L  W  M  L  S  L  I  L  K  L  E  E  P  L  G  K  L  L  F  I  P  F  L  E  S  *  L  L  F  C  T  I  S  N  T  F  R  E  K  E  K  F  L  F  L  K  A  Y  C  G  M  W  L  M  K  I  R  C  I  Y  V  D  H  V  G  H  T  N  N  Y  L  G  G  F  L  C  S  L  F  L  R  H  G  F  T  N  F  *  I  H  S  K  L  N  F  K  K  M  K  H  V  F  M   </second_frame>
            <third_frame>   *  S  D  H  F  K  S  I  K  F  S  S  Y  S  *  L  E  L  E  F  L  K  V  V  L  R  F  T  T  T  H  V  S  I  L  C  L  E  C  S  F  *  F  V  A  I  N  F  L  M  A  S  S  K  T  G  K  I  M  R  T  R  Y  S  K  S  L  F  Y  *  Q  M  D  G  *  K  *  I  L  P  K  K  K  K  I  E  A  K  I  N  H  F  I  L  S  I  M  H  I  N  C  L  R  K  I  L  S  E  G  *  K  N  Q  L  E  R  K  K  N  N  G  S  S  V  I  F  H  Y  S  S  T  Q  T  P  S  S  T  L  F  F  L  F  S  S  L  S  I  F  F  Y  F  C  S  *  S  K  G  *  Q  K  S  *  N  F  Y  S  K  K  Q  F  F  H  C  F  A  T  *  S  L  C  *  F  S  S  S  S  C  *  N  I  H  K  H  F  Y  S  F  *  N  E  S  L  E  L  Y  *  L  W  K  C  *  C  F  E  V  G  V  Q  C  C  S  S  *  H  *  G  R  S  S  L  D  *  D  C  C  C  C  S  *  P  C  *  F  *  T  T  A  R  K  I  *  G  H  *  F  S  T  S   : N  C  A  R  L  *  C  C  W  C  G  S  E  S  W  *  S  G  K  G  I  K  R  R  G  *  S  I  W  R  Y  T  *  E  S  I  R  W  T  K  A  I  W  I  L  S  *  V  H  C  C  *  R  E  T  S  C  F  E  T  Q  E  S  *  F  C  G  G  C  C  S  S  S  S  Y  *  D  C  L  *  R  S  *  E  S  W  I  F  F  W  Q  I  H  S  C  F  G  R  C  W  R  C  W  I  P  S  N  P   : A  C  *  T  C  I  W  C  F  *  S  S  S  Y  L  *  H  R  E  V  G  T  P  E  K  L  R  S  *  F  S  Y  *  L  H  *  G  E  F  *  R  S  A  *  Q  V  *  C  C  L  *  F  S  W :   S  G  *  K  G  G  E  G  S  E  G  R  W  E  C  G  S  A  N  R  G  S  N  S  T  R  F  *  I  C  G  D  I  K  W  R  D  V  E  E  T  E  P  I  L  G  K  W  E  G  E  T  S  D  R  S  K  G  T  I  L  I  *  *  G  C  G  C  F  L  L  S  *  N  W  K  S  H  W  E  S  C  Y  S  S  H  S  L  K  V  S  S  Y  F  V  Q  F  L  I  H  L  G  K  R  R  S  F  C  S  S  K  P  I  V  A  C  G  *  *  K  *  D  V  S  M  L  I  M  L  D  T  Q  I  I  T  *  E  D  F  C  V  H  S  F  L  D  M  V  L  P  T  F  E  S  I  A  N  *  I  L  K  K  *  N  M  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24187" stop="23732"/>
                    <exon start="22912" stop="22589"/>
                    <exon start="22076" stop="21917"/>
                    <exon start="21427" stop="21162"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRGKKTSWKERRTMEALLSSTTLQLKPLHPPSSFSSLHSPFSSISVLRVKGSKKAETFIQRSNFSTVLPLRVSASSQAAAAETSTSISIPSEMKAWSYTDYGSVDVLKLESNVAVPDIKEDQVLIKIVAAALNPVDFKRRLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKGLKEGDEVYGDIHEKALDGPKQFGSLAEYTAVEEKLVALKPKNLSFAEAAALPLAIETAYEGLEKAGFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATSSTGKLELLKSLGADLAIDYTKENFEDLPDKFDVVYDSVGQGEKAVKVVKEGGSVVVLTGAVTPPGFRFVVTSNGEMLKKLNPYLESGKVKPVIDPKGPFSFDKVVDAFSYLETGRATGKVVIHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24235" e_stop="23969"/>
            <exon e_start="23792" e_stop="23732"/>
            <exon e_start="22912" e_stop="22589"/>
            <exon e_start="22076" e_stop="21917"/>
            <exon e_start="21427" e_stop="21006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.949" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="24235" e_stop="23969" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23968" i_stop="23793" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23792" e_stop="23732" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="22912" e_stop="22589" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22076" e_stop="21917" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.970">
            <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="21427" e_stop="21006" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24235" stop="23969"/>
              <exon start="23792" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCT : TAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA : ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG : CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG : GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTG</gDNA_template>
            <first_frame> I  S  S  Y  L  S  C  T  *  I  V  *  G  K  Y  *  V  R  G  K  K  T  S  W  K  E  R  R  T  M  E  A  L  L  S  S  T  T  L  Q  L  K  P  L  H  P  P  S  S  F  S  S  L  H  S  P  F  S  S  I  S  V  L  R  V  K  G  S  K  K  A  E  T  F  I  Q  R  S  N  F  S  T  V  L  P  L  R  V  S  :  *  P  C  *  F  *  T  T  A  R  K  I  *  G  H  *  F  S  T  S   : N  C  A  R  L  *  C  C  W  C  G  S  E  S  W  *  S  G  K  G  I  K  R  R  G  *  S  I  W  R  Y  T  *  E  S  I  R  W  T  K  A  I  W  I  L  S  *  V  H  C  C  *  R  E  T  S  C  F  E  T  Q  E  S  *  F  C  G  G  C  C  S  S  S  S  Y  *  D  C  L  *  R  S  *  E  S  W  I  F  F  W  Q  I  H  S  C  F  G  R  C  W  R  C  W  I  P  S  N  P   : A  C  *  T  C  I  W  C  F  *  S  S  S  Y  L  *  H  R  E  V  G  T  P  E  K  L  R  S  *  F  S  Y  *  L  H  *  G  E  F  *  R  S  A  *  Q  V  *  C  C  L  *  F  S  W :   S  G  *  K  G  G  E  G  S  E  G  R  W  E  C  G  S  A  N  R  G  S  N  S  T  R  F  *  I  C  G  D  I  K  W  R  D  V  E  E  T  E  P  I  L  G  K  W  E  G  E  T  S  D  R  S  K  G  T  I  L  I  *  *  G  C  G  C  F  L  L  S  *  N  W  K  S  H  W  E  S  C  Y  S  S  H  S  L  K  V  S  S  Y  F  V  Q  F  L  I  H  L  G  K  R  R  S  F  C  S  S  K  P  I  V  A  C  G  *  *  K  *  D  V  S  M  L  I  M  L  D  T  Q  I  I  T  *  E  D  F  C  </first_frame>
            <second_frame>  F  H  L  I  Y  H  A  H  K  L  F  E  E  N  T  E  *  G  V  K  K  P  A  G  K  K  E  E  Q  W  K  L  C  Y  L  P  L  L  F  N  S  N  P  F  I  H  P  L  L  S  L  L  F  T  L  H  F  L  L  F  L  F  L  E  *  R  V  A  K  K  L  K  L  L  F  K  E  A  I  F  P  L  F  C  H  L  E  S  L :   N  P  V  D  F  K  R  R  L  G  K  F  K  A  T  D  S  P  L  P  :  T  V  P  G  Y  D  V  A  G  V  V  V  K  V  G  S  Q  V  K  G  L  K  E  G  D  E  V  Y  G  D  I  H  E  K  A  L  D  G  P  K  Q  F  G  S  L  A  E  Y  T  A  V  E  E  K  L  V  A  L  K  P  K  N  L  S  F  A  E  A  A  A  L  P  L  A  I  E  T  A  Y  E  G  L  E  K  A  G  F  S  S  G  K  S  I  L  V  L  G  G  A  G  G  V  G  S  L  V  I  Q  :  L  A  K  H  V  F  G  A  S  K  V  A  A  T  S  S  T  G  K  L  E  L  L  K  S  L  G  A  D  L  A  I  D  Y  T  K  E  N  F  E  D  L  P  D  K  F  D  V  V  Y  D  S  V   : G  Q  G  E  K  A  V  K  V  V  K  E  G  G  S  V  V  V  L  T  G  A  V  T  P  P  G  F  R  F  V  V  T  S  N  G  E  M  L  K  K  L  N  P  Y  L  E  S  G  K  V  K  P  V  I  D  P  K  G  P  F  S  F  D  K  V  V  D  A  F  S  Y  L  E  T  G  R  A  T  G  K  V  V  I  H  P  I  P  *  K  L  A  L  I  L  Y  N  F  *  Y  I  *  G  K  G  E  V  F  V  P  Q  S  L  L  W  H  V  V  D  E  N  K  M  Y  L  C  *  S  C  W  T  H  K  *  L  L  R  R  I  F  V </second_frame>
            <third_frame>   F  I  L  S  I  M  H  I  N  C  L  R  K  I  L  S  E  G  *  K  N  Q  L  E  R  K  K  N  N  G  S  S  V  I  F  H  Y  S  S  T  Q  T  P  S  S  T  L  F  F  L  F  S  S  L  S  I  F  F  Y  F  C  S  *  S  K  G  *  Q  K  S  *  N  F  Y  S  K  K  Q  F  F  H  C  F  A  T  *  S  L   : L  T  L  L  I  L  N  D  G  S  E  N  L  R  P  L  I  L  H  F  Q :   L  C  Q  V  M  M  L  L  V  W  *  *  K  L  V  V  R  *  R  D  *  K  K  G  M  K  Y  M  E  I  Y  M  R  K  H  *  M  D  Q  S  N  L  D  P  *  L  S  T  L  L  L  K  R  N  *  L  L  *  N  P  R  I  L  V  L  R  R  L  L  L  F  L  *  L  L  R  L  L  M  K  V  L  R  K  L  D  F  L  L  A  N  P  F  L  F  W  E  V  L  A  V  L  D  P  *  *  S  S :   L  L  N  M  Y  L  V  L  L  K  *  Q  L  P  L  A  Q  G  S  W  N  S  *  K  A  *  E  L  I  *  L  L  T  T  L  R  R  I  L  K  I  C  L  T  S  L  M  L  F  M  I  Q  L  :  V  R  V  K  R  R  *  R  *  *  R  K  V  G  V  W  *  C  *  Q  G  Q  *  L  H  Q  V  L  D  L  W  *  H  Q  M  E  R  C  *  R  N  *  T  H  T  W  K  V  G  R  *  N  Q  *  *  I  Q  R  D  H  S  H  L  I  R  L  W  M  L  S  L  I  L  K  L  E  E  P  L  G  K  L  L  F  I  P  F  L  E  S  *  L  L  F  C  T  I  S  N  T  F  R  E  K  E  K  F  L  F  L  K  A  Y  C  G  M  W  L  M  K  I  R  C  I  Y  V  D  H  V  G  H  T  N  N  Y  L  G  G  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24039" stop="23969"/>
                    <exon start="23792" stop="23732"/>
                    <exon start="22912" stop="22589"/>
                    <exon start="22076" stop="21917"/>
                    <exon start="21427" stop="21162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKKLKLLFKEAIFPLFCHLESLNPVDFKRRLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKGLKEGDEVYGDIHEKALDGPKQFGSLAEYTAVEEKLVALKPKNLSFAEAAALPLAIETAYEGLEKAGFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATSSTGKLELLKSLGADLAIDYTKENFEDLPDKFDVVYDSVGQGEKAVKVVKEGGSVVVLTGAVTPPGFRFVVTSNGEMLKKLNPYLESGKVKPVIDPKGPFSFDKVVDAFSYLETGRATGKVVIHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38018" PGL_stop="29219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38018" e_stop="37886"/>
            <exon e_start="31427" e_stop="30948"/>
            <exon e_start="30847" e_stop="30362"/>
            <exon e_start="30198" e_stop="29219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.857" e_score="0.977"/>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="38018" e_stop="37886" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="31427" e_stop="30948" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30947" i_stop="30848" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30847" e_stop="30362" e_length="486"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="30198" e_stop="29219" e_length="980"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38018" stop="37886"/>
              <exon start="31427" stop="30948"/>
              <exon start="30847" stop="30362"/>
              <exon start="30198" stop="29219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTACAAAACTTTGTTATTAACATCAAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG : GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAG : GTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG : ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAAATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</gDNA_template>
            <first_frame> H  Y  K  T  L  L  L  T  S  K  K  K  T  Q  R  D  N  G  R  G  K  L  S  *  C  D  Q  S  T  W  F  F  R  S  *  L  S  Y  S  Q  Q  W  *  Q   : G  *  A  *  Y  F  K  G  E  K  N  W  F  L  L  F  S  I  M  V  W  S  V  Q  T  F  H  P  K  F  G  R  G  V  Q  C  S  P  T  K  R  R  L  *  S  C  F  P  Y  C  *  Y  G  *  *  I  F  *  G  V  L  F  *  N  A  L  A  R  C  P  I  L  *  F  *  N  T  *  T  F  E  *  I  V  C  C  *  G  N  T  P  L  S  D  P  *  C  *  W  E  G  S  D  K  *  R  G  *  N  H  C  *  A  W  G  G  G  L  P  I  H  S  R  T  A  K  R  T  *  R  A  R  R  N  R  *  K  R  T  V  F  E  I  Y  L  G  V  T  V  K  K  L  R  N  C  G  *  W  K  E   : G  T  C  C  *  A  *  R  Q  D  Y  R  P  I  Y  V  N  G  F  F  *  R  M  *  I  L  Y  W  E  A  D  R  D  V  *  Q  V  E  V  S  G  R  K  L  *  D  C  H  D  S  S  *  R  *  R  *  *  *  I  F  *  E  R  V  F  E  N  A  L  V  F  T  S  L  K  R  Q  D  L  Q  E  A  G  Q  V  L  *  A  L  Y  P  S  Y  P  S  H  H  W  N  R  W  E  D  S  S  F  *  C  C  *  S  R  R  G  A  W  Y  P  G  I  S  F  *  P  R  E  V  C  *  T  *  A  D  T  E  S  *  T  G  S  T  N  V  G  V  D  F  G  Y  *  R  S  *  F  R  H  W  K  R  W  *  K   : D  P  R  V  *  P  R  R  E  D  Y  S  P  L  L  L  S  T  L  V  S  S  M  P  C  F  Y  T  T  A  *  R  G  I  *  D  D  K  I  Q  K  W  S  I  G  S  D  I  L  I  *  R  P  R  S  S  L  I  *  *  V  F  C  Y  N  A  M  A  G  S  S  V  W  *  *  E  E  D  I  F  E  S  P  I  Q  S  S  W  H  T  N  I  G  C  C  R  A  I  R  Q  D  C  Y  N  *  R  Q  K  F  D  H  V  S  W  C  *  G  F  S  I  H  R  G  A  Y  G  G  D  *  S  R  N  C  R  N  G  K  G  V  A  *  E  N  Y  A  Q  T  S  R  A  *  T  S  A  F  *  A  F  C  L  Q  L  *  C  M  R  G  A  G  T  D  M  V  I  L  L  *  R  M  *  L  *  Y  A  P  K  M  C  S  R  R  G  K  G  K  Q  H  G  Y  R  G  R  S  K  G  S  Y  A  P  K  L  C  S  R  R  G  K  G  K  Q  H  G  Y  R  G  R  S  K  G  S  R  Q  R  G  T  E  N  K  *  G  M  D  L  *  W  *  S  L  F  Q  R  L  I  C  H  Y  V  L  L  T  M  R  H  L  L  S  S  I  F  V  G  F  E  I  V  L  C  E  T  L  L  S  *  N  L  V  T  S  M  Q  Y  *  F  Y  *  T  L  D  L  Y  L  I  L  M  V  L  S  I  S  M  F  I  V  S  M  S  Q  A  I  C  E  R  *  *  Y  *  F </first_frame>
            <second_frame>  T  T  K  L  C  Y  *  H  Q  K  K  K  H  K  E  T  M  A  G  E  N  C  H  D  V  I  N  L  L  G  S  S  D  R  D  F  L  I  R  N  N  G  D  K  :  V  K  L  D  T  L  K  E  K  K  I  G  F  Y  F  S  A  S  W  C  G  P  C  K  H  F  T  P  N  L  V  E  A  Y  N  A  L  L  P  K  G  D  F  E  V  V  F  L  T  A  D  M  D  D  E  S  F  K  E  Y  F  S  K  M  P  W  L  A  V  P  F  S  D  S  E  T  R  K  R  L  N  E  L  F  A  V  R  G  I  P  H  L  V  I  L  D  A  S  G  K  V  V  T  N  S  G  V  E  I  I  V  E  H  G  V  E  G  Y  P  F  T  Q  E  R  L  N  E  L  K  E  Q  E  E  T  A  K  R  E  Q  S  L  K  S  I  L  E  S  Q  S  R  N  Y  V  I  A  A  D  G  R  K  :  V  P  V  A  E  L  E  G  K  I  I  G  L  Y  M  S  M  A  S  F  E  E  C  E  S  F  T  G  K  L  I  E  M  Y  D  K  L  K  S  Q  G  E  N  F  E  I  V  M  I  P  L  D  D  E  D  D  D  E  S  F  K  K  E  F  S  R  M  P  W  F  S  L  P  L  K  D  K  T  C  K  K  L  A  R  Y  F  E  L  S  T  L  P  T  L  V  I  I  G  T  D  G  K  T  L  H  S  N  V  A  E  A  V  E  E  H  G  I  L  A  Y  P  F  S  H  E  K  F  A  E  L  E  Q  I  Q  K  A  K  L  E  A  Q  T  L  E  S  I  L  V  T  R  D  R  D  F  V  I  G  K  D  G  E  K  :  I  L  V  S  D  L  V  G  K  T  I  L  L  Y  F  S  A  H  W  C  P  P  C  R  A  F  T  P  Q  L  K  E  A  Y  E  T  I  K  S  K  N  G  P  L  E  V  I  F  L  S  S  D  Q  D  Q  A  S  F  D  E  Y  F  A  T  M  P  W  L  A  L  P  F  G  D  E  R  K  T  Y  L  S  R  L  F  K  V  R  G  I  P  T  L  V  A  V  G  P  S  G  K  T  V  T  T  D  A  R  S  L  I  M  C  H  G  A  K  A  F  P  F  T  E  E  R  M  E  E  I  E  A  E  T  A  E  M  A  K  G  W  P  E  K  I  M  H  K  L  H  E  H  E  L  L  L  S  K  R  S  A  Y  N  C  D  V  C  E  E  L  G  Q  I  W  S  F  Y  C  E  E  C  D  F  D  M  H  P  K  C  A  L  E  E  E  K  E  S  N  M  D  I  E  E  D  Q  K  D  H  M  H  P  N  Y  A  L  E  E  E  K  E  S  N  M  D  I  E  E  D  Q  K  D  Q  G  K  E  E  Q  K  T  N  E  G  W  I  C  D  G  E  V  C  F  K  G  *  F  V  I  M  S  C  *  L  *  G  I  C  *  A  A  Y  L  W  V  L  K  L  F  F  V  R  H  F  Y  P  K  I  L  S  L  L  C  N  T  S  F  I  K  R  W  T  C  I  *  S  *  W  Y  C  L  S  P  C  L  S  S  L  *  V  K  L  F  V  K  D  N  D  I  D   </second_frame>
            <third_frame>   L  Q  N  F  V  I  N  I  K  K  K  N  T  K  R  Q  W  Q  G  K  I  V  M  M  *  S  I  Y  L  V  L  Q  I  V  T  F  L  F  A  T  M  V  T  R :   L  S  L  I  L  *  R  R  K  K  L  V  S  T  F  Q  H  H  G  V  V  R  A  N  I  S  P  Q  I  W  *  R  R  T  M  L  S  Y  Q  K  E  T  L  K  L  F  S  L  L  L  I  W  M  M  N  L  L  R  S  T  F  L  K  C  L  G  S  L  S  H  S  L  I  L  K  H  V  N  V  *  M  N  C  L  L  L  G  E  Y  P  T  *  *  S  L  M  L  V  G  R  *  *  Q  I  A  G  L  K  S  L  L  S  M  G  W  R  A  T  H  S  L  K  N  G  *  T  N  L  K  S  K  K  K  P  L  K  E  N  S  L  *  N  L  S  W  S  H  S  Q  E  T  T  *  L  R  L  M  E  G  R :   Y  L  L  L  S  L  K  A  R  L  *  A  Y  I  C  Q  W  L  L  L  K  N  V  N  P  L  L  G  S  *  S  R  C  M  T  S  *  S  L  R  E  K  T  L  R  L  S  *  F  L  L  T  M  K  M  M  M  N  L  L  R  K  S  F  R  E  C  L  G  F  H  F  P  *  K  T  R  P  A  R  S  W  P  G  T  L  S  S  L  P  F  L  P  *  S  S  L  E  Q  M  G  R  L  F  I  L  M  L  L  K  P  S  R  S  M  V  S  W  H  I  L  L  A  T  R  S  L  L  N  L  S  R  Y  R  K  L  N  W  K  H  K  R  W  S  R  F  W  L  L  E  I  V  I  S  S  L  E  K  M  V  K  R :   S  S  C  L  T  S  *  G  R  L  F  S  F  T  S  Q  H  I  G  V  L  H  A  V  L  L  H  H  S  L  K  R  H  M  R  R  *  N  P  K  M  V  H  W  K  *  Y  S  Y  L  A  T  K  I  K  P  H  L  M  S  I  L  L  Q  C  H  G  W  L  F  R  L  V  M  R  G  R  H  I  *  V  A  Y  S  K  F  V  A  Y  Q  H  W  L  L  *  G  H  Q  A  R  L  L  Q  L  T  P  E  V  *  S  C  V  M  V  L  R  L  F  H  S  P  R  S  V  W  R  R  L  K  Q  K  L  Q  K  W  Q  R  G  G  L  R  K  L  C  T  N  F  T  S  M  N  F  C  F  L  S  V  L  L  T  I  V  M  Y  A  R  S  W  D  R  Y  G  H  S  I  V  K  N  V  T  L  I  C  T  Q  N  V  L  *  K  R  K  R  K  A  T  W  I  S  R  K  I  K  R  I  I  C  T  Q  I  M  L  *  K  R  K  R  K  A  T  W  I  S  R  K  I  K  R  I  K  A  K  R  N  R  K  Q  M  R  D  G  F  V  M  V  K  F  V  S  K  V  N  L  S  L  C  L  V  D  Y  E  A  F  A  E  Q  H  I  C  G  F  *  N  C  S  L  *  D  T  S  I  L  K  S  C  H  F  Y  A  I  L  V  L  L  N  V  G  P  V  F  D  P  D  G  T  V  Y  L  H  V  Y  R  L  Y  E  S  S  Y  L  *  K  I  M  I  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37996" stop="37886"/>
                    <exon start="31427" stop="30948"/>
                    <exon start="30847" stop="30362"/>
                    <exon start="30198" stop="29443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1830</number_coding_nucleotides>
                  <number_encoded_amino_acids>610</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKKKHKETMAGENCHDVINLLGSSDRDFLIRNNGDKVKLDTLKEKKIGFYFSASWCGPCKHFTPNLVEAYNALLPKGDFEVVFLTADMDDESFKEYFSKMPWLAVPFSDSETRKRLNELFAVRGIPHLVILDASGKVVTNSGVEIIVEHGVEGYPFTQERLNELKEQEETAKREQSLKSILESQSRNYVIAADGRKVPVAELEGKIIGLYMSMASFEECESFTGKLIEMYDKLKSQGENFEIVMIPLDDEDDDESFKKEFSRMPWFSLPLKDKTCKKLARYFELSTLPTLVIIGTDGKTLHSNVAEAVEEHGILAYPFSHEKFAELEQIQKAKLEAQTLESILVTRDRDFVIGKDGEKILVSDLVGKTILLYFSAHWCPPCRAFTPQLKEAYETIKSKNGPLEVIFLSSDQDQASFDEYFATMPWLALPFGDERKTYLSRLFKVRGIPTLVAVGPSGKTVTTDARSLIMCHGAKAFPFTEERMEEIEAETAEMAKGWPEKIMHKLHEHELLLSKRSAYNCDVCEELGQIWSFYCEECDFDMHPKCALEEEKESNMDIEEDQKDHMHPNYALEEEKESNMDIEEDQKDQGKEEQKTNEGWICDGEVCFKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31247" e_stop="30667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31247" e_stop="30667" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31247" stop="30667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTA</gDNA_template>
            <first_frame> F  S  K  M  P  W  L  A  V  P  F  S  D  S  E  T  R  K  R  L  N  E  L  F  A  V  R  G  I  P  H  L  V  I  L  D  A  S  G  K  V  V  T  N  S  G  V  E  I  I  V  E  H  G  V  E  G  Y  P  F  T  Q  E  R  L  N  E  L  K  E  Q  E  E  T  A  K  R  E  Q  S  L  K  S  I  L  E  S  Q  S  R  N  Y  V  I  A  A  D  G  R  K  V  D  S  R  C  C  S  S  L  L  H  F  I  L  L  F  I  N  K  S  F  P  H  Y  F  F  A  V  S  *  *  L  S  G  T  C  C  *  A  *  R  Q  D  Y  R  P  I  Y  V  N  G  F  F  *  R  M  *  I  L  Y  W  E  A  D  R  D  V  *  Q  V  E  V  S  G  R  K  L  *  D  C  H  D  S  S  *  R  *  R  *  *  *  I  F   </first_frame>
            <second_frame>  F  L  K  C  L  G  S  L  S  H  S  L  I  L  K  H  V  N  V  *  M  N  C  L  L  L  G  E  Y  P  T  *  *  S  L  M  L  V  G  R  *  *  Q  I  A  G  L  K  S  L  L  S  M  G  W  R  A  T  H  S  L  K  N  G  *  T  N  L  K  S  K  K  K  P  L  K  E  N  S  L  *  N  L  S  W  S  H  S  Q  E  T  T  *  L  R  L  M  E  G  R  L  I  Q  D  A  A  L  L  S  F  I  S  Y  S  C  L  L  I  K  V  S  L  I  T  F  L  L  C  L  D  N  Y  Q  V  P  V  A  E  L  E  G  K  I  I  G  L  Y  M  S  M  A  S  F  E  E  C  E  S  F  T  G  K  L  I  E  M  Y  D  K  L  K  S  Q  G  E  N  F  E  I  V  M  I  P  L  D  D  E  D  D  D  E  S  F  </second_frame>
            <third_frame>   F  *  N  A  L  A  R  C  P  I  L  *  F  *  N  T  *  T  F  E  *  I  V  C  C  *  G  N  T  P  L  S  D  P  *  C  *  W  E  G  S  D  K  *  R  G  *  N  H  C  *  A  W  G  G  G  L  P  I  H  S  R  T  A  K  R  T  *  R  A  R  R  N  R  *  K  R  T  V  F  E  I  Y  L  G  V  T  V  K  K  L  R  N  C  G  *  W  K  E  G  *  F  K  M  L  L  F  S  P  S  F  H  T  L  V  Y  *  *  K  F  P  S  L  L  F  C  C  V  L  I  I  I  R  Y  L  L  L  S  L  K  A  R  L  *  A  Y  I  C  Q  W  L  L  L  K  N  V  N  P  L  L  G  S  *  S  R  C  M  T  S  *  S  L  R  E  K  T  L  R  L  S  *  F  L  L  T  M  K  M  M  M  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31247" stop="30858"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKMPWLAVPFSDSETRKRLNELFAVRGIPHLVILDASGKVVTNSGVEIIVEHGVEGYPFTQERLNELKEQEETAKREQSLKSILESQSRNYVIAADGRKVDSRCCSSLLHFILLFINKSFPHYFFAVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30967" stop="30668"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLMEGRLIQDAALLSFISYSCLLIKVSLITFLLCLDNYQVPVAELEGKIIGLYMSMASFEECESFTGKLIEMYDKLKSQGENFEIVMIPLDDEDDDESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35371" PGL_stop="36019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35371" e_stop="36019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="35371" e_stop="36019" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35371" stop="36019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAAACATGGGATCTGGTCATACAGCCTTCGAGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  N  M  G  S  G  H  T  A  F  E  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  R  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  K  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35372" stop="36019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSRRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="36030" PGL_stop="36837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36030" e_stop="36837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="36030" e_stop="36837" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36030" stop="36837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTAGGCTATACTCGGAGCTCATATGACTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTAGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTTGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTTTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACATAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  *  A  I  L  G  A  H  M  T  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  *  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  L  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  L  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  *  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  R  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  S  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  C  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  F  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  I  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36032" stop="36835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVFTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDIRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63237" PGL_stop="62831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63237" e_stop="62831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="63237" e_stop="62831" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63237" stop="62831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACGGTTAATCCATCTTCAGGCTACAGCCTCATGCCCAATCACCTGCCTCCTAATTTTTCAATGGCTAATCACAATGGTTATTATGTGTATCCACCACCAATAGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGCGTGTGCAGTGGCTGCTGTGGATGGTGACGTTAAGTCTCCTGCGGAAAAGAGTGAGGAGTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAAAAGTAGACTATCTTTCTCTGTTACATAATTTGAGAACTATTGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</gDNA_template>
            <first_frame> P  T  V  N  P  S  S  G  Y  S  L  M  P  N  H  L  P  P  N  F  S  M  A  N  H  N  G  Y  Y  V  Y  P  P  P  I  D  N  S  Y  R  Q  G  D  A  S  S  G  S  T  S  H  A  C  A  V  A  A  V  D  G  D  V  K  S  P  A  E  K  S  E  E  *  S  V  S  D  L  P  K  E  L  S  L  T  *  N  F  K  I  S  E  K  S  R  L  S  F  S  V  T  *  F  E  N  Y  *  Q  S  S  I  V  L  C  E  V  *  E  C  S  F  E  L  S  E  P  N  G  G  P  L  N  W  L  F  N   </first_frame>
            <second_frame>  Q  R  L  I  H  L  Q  A  T  A  S  C  P  I  T  C  L  L  I  F  Q  W  L  I  T  M  V  I  M  C  I  H  H  Q  *  T  T  V  I  G  R  G  M  H  Q  V  E  A  L  L  M  R  V  Q  W  L  L  W  M  V  T  L  S  L  L  R  K  R  V  R  S  D  Q  F  L  I  C  R  R  N  *  A  L  P  E  T  S  R  L  V  K  K  V  D  Y  L  S  L  L  H  N  L  R  T  I  D  N  Q  V  *  F  F  V  K  F  R  N  V  P  S  N  *  A  S  Q  M  V  A  L  L  I  G  C  L  I  </second_frame>
            <third_frame>   N  G  *  S  I  F  R  L  Q  P  H  A  Q  S  P  A  S  *  F  F  N  G  *  S  Q  W  L  L  C  V  S  T  T  N  R  Q  Q  L  *  A  G  G  C  I  K  W  K  H  F  S  C  V  C  S  G  C  C  G  W  *  R  *  V  S  C  G  K  E  *  G  V  I  S  F  *  S  A  E  G  I  E  P  Y  L  K  L  Q  D  *  *  K  K  *  T  I  F  L  C  Y  I  I  *  E  L  L  T  I  K  Y  S  S  L  *  S  L  G  M  F  L  R  T  K  R  A  K  W  W  P  S  *  L  A  V  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63237" stop="63022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTVNPSSGYSLMPNHLPPNFSMANHNGYYVYPPPIDNSYRQGDASSGSTSHACAVAAVDGDVKSPAEKSEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80673" PGL_stop="80233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80673" e_stop="80233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="80673" e_stop="80233" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80673" stop="80233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAATAGTTTAATTTTTTATTCTTTAAATGAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAACAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTTAAAAAAATTAGAAATAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  I  F  L  R  I  R  N  *  I  T  I  H  T  K  K  N  S  L  I  F  Y  S  L  N  E  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  T  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  C  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  R  N  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P </first_frame>
            <second_frame>  Y  C  R  *  P  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  I  V  *  F  F  I  L  *  M  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  Q  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  V  L  *  *  K  N  H  I  Y  P  *  I  I  F  L  K  K  L  E  I  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F   </second_frame>
            <third_frame>   I  V  D  D  Q  N  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  K  *  F  N  F  L  F  F  K  *  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  Y  F  D  R  R  I  I  Y  T  P  K  *  F  F  *  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  Y  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0086I08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="94749" PGL_stop="92840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94749" e_stop="94646"/>
            <exon e_start="93436" e_stop="92840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94749" e_stop="94646" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94645" i_stop="93437" i_length="1209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93436" e_stop="92840" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94749" stop="94646"/>
              <exon start="93436" stop="92840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTG : ATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</gDNA_template>
            <first_frame> E  I  L  E  R  E  R  D  G  W  W  F  R  K  W  R  I  S  *  L  S  Q  I  S  T  T  N  P  C  R  S  P  F  L  * :   C  G  D  E  P  G  T  A  C  T  S  Q  P  G  S  *  *  N  H  Q  S  G  A  R  R  S  H  T  K  R  G  Q  N  H  A  *  H  P  S  F  P  C  Q  D  I  R  *  R  Q  T  D  H  V  P  L  Y  V  *  V  H  M  L  C  N  I  R  S  Q  H  A  L  P  A  *  A  A  E  H  N  H  C  *  R  R  G  L  G  H  *  Q  V  W  V  *  *  L  H  *  T  L  A  L  L  L  S  S  K  *  *  G  *  W  W  R  V  W  I  S  Y  K  G  V  F  V  E  V  S  N  G  *  Y  S  F  K  L  Q  Y  H  T  L  *  R  S  S  *  F  S  Y  G  S  S  P  L  C  V  S  T  T  N  G  K  W  *  Y  A  G  G  G  K  H  F  S  V  C  R  G  F  S  G  Y  *  R  *  V  S  Y  G  G  G  *  G  V  N  N  L  S  I  Y   </first_frame>
            <second_frame>  K  Y  *  R  E  K  E  M  D  G  G  S  G  N  G  G  F  H  S  Y  R  R  S  P  Q  P  T  P  A  D  P  P  S  S   : D  V  E  M  S  L  E  L  P  A  H  L  N  Q  E  V  D  E  I  I  S  Q  E  Q  D  E  V  I  P  N  V  A  R  I  M  H  S  T  H  P  S  H  V  K  I  S  D  D  A  K  R  T  M  Y  H  C  M  S  E  F  I  C  F  V  T  Y  E  A  N  T  H  C  Q  R  E  Q  R  N  T  I  T  V  E  D  V  D  W  V  I  N  K  F  G  F  D  D  Y  I  E  P  L  P  Y  Y  F  P  P  N  S  E  D  D  G  G  E  C  G  S  L  T  R  E  S  L  L  K  C  P  M  V  D  T  A  S  S  S  N  I  T  P  Y  S  V  P  P  N  F  P  M  A  H  H  H  F  V  Y  P  P  P  M  G  N  G  D  M  Q  G  E  A  S  T  S  Q  Y  A  G  V  S  V  D  T  D  V  E  S  P  M  E  E  D  K  E  *  T  I  Y  R  S  I  </second_frame>
            <third_frame>   N  I  R  E  R  K  R  W  M  V  V  Q  E  M  E  D  F  I  A  I  A  D  L  H  N  Q  P  L  Q  I  P  L  P  L  :  M  W  R  *  A  W  N  C  L  H  I  S  T  R  K  L  M  K  S  S  V  R  S  K  T  K  S  Y  Q  T  W  P  E  S  C  I  A  P  I  L  P  M  S  R  Y  P  M  T  P  N  G  P  C  T  I  V  C  L  S  S  Y  A  L  *  H  T  K  P  T  R  I  A  S  V  S  S  G  T  Q  S  L  L  K  T  W  I  G  S  L  T  S  L  G  L  M  T  T  L  N  P  C  L  T  T  F  L  Q  I  V  R  M  M  V  A  S  V  D  L  L  Q  G  S  L  C  *  S  V  Q  W  L  I  Q  L  Q  A  P  I  S  H  P  I  A  F  L  L  I  F  L  W  L  I  T  T  L  C  I  H  H  Q  W  E  M  V  I  C  R  G  R  Q  A  L  L  S  M  Q  G  F  Q  W  I  L  T  L  S  L  L  W  R  R  I  R  S  E  Q  F  I  D  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94739" stop="94646"/>
                    <exon start="93436" stop="92859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKEMDGGSGNGGFHSYRRSPQPTPADPPSSDVEMSLELPAHLNQEVDEIISQEQDEVIPNVARIMHSTHPSHVKISDDAKRTMYHCMSEFICFVTYEANTHCQREQRNTITVEDVDWVINKFGFDDYIEPLPYYFPPNSEDDGGECGSLTRESLLKCPMVDTASSSNITPYSVPPNFPMAHHHFVYPPPMGNGDMQGEASTSQYAGVSVDTDVESPMEEDKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="112064" PGL_stop="111442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112064" e_stop="111442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112064" e_stop="111442" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112064" stop="111442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</gDNA_template>
            <first_frame> N  V  V  Y  L  K  Y  I  H  V  K  T  C  Y  *  P  F  F  G  V  L  R  R  I  *  L  S  V  I  N  Y  Q  R  M  N  *  Q  I  S  C  V  N  F  Y  L  V  R  G  T  L  S  S  L  M  M  S  G  K  L  L  H  V  M  N  *  C  H  A  S  M  M  P  I  M  E  V  D  L  S  *  Q  L  A  M  I  M  L  P  T  M  L  N  S  L  V  I  L  I  F  F  E  N  L  L  *  K  K  V  G  C  Y  *  R  I  K  C  S  M  K  N  V  A  L  *  S  *  K  M  L  A  K  R  *  H  K  S  V  V  G  Y  L  F  Q  L  S  W  *  Q  V  F  S  K  R  W  R  R  R  N  I  V  G  N  K  L  Q  *  I  *  V  H  I  S  R  L  S  Q  R  I  *  *  I  L  V  T  K  I  Y  H  F  I  *  N  L  A  F  C  I  L  E  Y  F  R  K  M  K  R  *   </first_frame>
            <second_frame>  M  L  C  I  S  S  I  Y  T  *  R  L  V  T  N  H  S  S  E  C  *  E  G  Y  S  Y  Q  *  *  T  T  R  E  *  I  S  R  *  V  A  *  T  S  I  W  S  E  V  P  Y  P  H  *  *  C  L  G  N  Y  C  M  *  *  T  N  A  M  L  L  *  C  Q  *  W  K  *  T  Y  P  D  N  S  P  *  S  C  C  L  P  C  *  T  R  *  *  S  S  F  S  S  K  I  Y  S  R  R  K  L  D  A  I  E  E  *  S  V  Q  *  K  M  L  P  C  S  L  R  R  C  W  P  K  D  S  T  K  V  W  W  A  T  S  F  S  C  P  G  S  R  Y  S  R  N  D  G  E  G  G  T  L  L  G  T  S  C  N  K  F  R  S  T  Y  P  G  *  V  R  G  Y  N  K  S  *  L  P  R  F  T  I  S  F  E  T  L  L  F  V  F  W  S  T  F  G  R  *  R  D  K  </second_frame>
            <third_frame>   C  C  V  S  Q  V  Y  T  R  K  D  L  L  L  T  I  L  R  S  V  K  K  D  I  V  I  S  D  K  L  P  E  N  E  L  A  D  K  L  R  K  L  L  F  G  Q  R  Y  L  I  L  I  D  D  V  W  E  T  T  A  C  D  E  L  M  P  C  F  Y  D  A  N  N  G  S  R  L  I  L  T  T  R  H  D  H  V  A  Y  H  A  K  L  V  S  D  P  H  F  L  R  K  F  T  L  E  E  S  W  M  L  L  K  N  K  V  F  N  E  K  C  C  P  V  V  L  E  D  V  G  Q  K  I  A  Q  K  C  G  G  L  P  L  S  V  V  L  V  A  G  I  L  E  T  M  E  K  E  E  H  C  W  E  Q  V  A  I  N  L  G  P  H  I  Q  A  K  S  E  D  I  I  N  L  S  Y  Q  D  L  P  F  H  L  K  P  C  F  L  Y  F  G  V  L  S  E  D  E  E  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112062" stop="111442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCVSQVYTRKDLLLTILRSVKKDIVISDKLPENELADKLRKLLFGQRYLILIDDVWETTACDELMPCFYDANNGSRLILTTRHDHVAYHAKLVSDPHFLRKFTLEESWMLLKNKVFNEKCCPVVLEDVGQKIAQKCGGLPLSVVLVAGILETMEKEEHCWEQVAINLGPHIQAKSEDIINLSYQDLPFHLKPCFLYFGVLSEDEEIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="114815" PGL_stop="114393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114815" e_stop="114393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="114815" e_stop="114393" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114815" stop="114393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCGAAGTTCAGCCCAAACAGCCAACTTTAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATATTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCATTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTTACTCTTCACATCGAAGGGTTTTCCATGTAAATCTTGGCG</gDNA_template>
            <first_frame> T  Y  R  E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  F  S  P  N  S  Q  L  *  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  N  I  L  Y  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  F  T  L  H  I  E  G  F  S  M  *  I  L  A </first_frame>
            <second_frame>  H  T  E  S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  R  S  S  A  Q  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  T  Y  Y  I  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  *  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  H  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  L  L  F  T  S  K  G  F  P  C  K  S  W   </second_frame>
            <third_frame>   I  Q  R  V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  E  V  Q  P  K  Q  P  T  L  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  S  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  I  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0086I08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="125440" PGL_stop="126133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125440" e_stop="126133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125440" e_stop="126133" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125440" stop="126133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</gDNA_template>
            <first_frame> F  S  R  T  T  E  L  N  H  L  L  F  T  L  Q  F  S  I  K  A  R  P  T  S  Y  L  P  *  H  N  R  H  D  P  K  L  S  R  K  W  I  N  C  N  H  N  N  Q  F  K  F  I  L  T  I  Q  T  I  S  L  T  N  Q  T  I  C  Q  *  L  N  P  L  L  L  I  T  H  P  M  V  H  L  *  V  F  L  L  S  *  L  L  F  L  S  Y  L  L  L  L  V  L  W  D  V  Y  V  A  R  K  A  M  E  L  I  R  *  R  K  V  V  M  V  N  H  K  N  K  K  R  E  N  I  I  I  I  I  S  T  M  S  F  T  I  K  E  E  E  G  I  *  N  L  D  L  I  R  K  L  Q  V  L  K  W  L  Q  H  M  E  I  I  I  I  R  G  L  S  L  I  R  I  L  M  E  E  L  D  F  L  I  I  I  L  I  S  S  L  V  H  E  N  *  L  C  S  *  R  N  S  L  Y  V  L  I  T  L  V  V  V  L  I  L  F  C  *  I  F  K  F  L  L  T  </first_frame>
            <second_frame>  L  V  E  L  L  N  S  I  T  C  Y  L  L  Y  N  F  L  S  R  L  V  L  R  P  T  Y  P  N  I  I  V  T  T  Q  N  Y  Q  E  N  G  S  I  A  T  T  T  T  S  S  S  L  S  *  Q  S  K  Q  F  P  *  P  T  K  Q  Y  A  N  D  S  I  L  F  F  S  *  L  I  Q  W  F  I  C  E  C  F  C  C  P  S  Y  C  F  C  H  I  C  Y  C  L  C  C  G  T  F  M  *  Q  E  K  Q  W  S  *  *  G  E  E  K  *  S  W  S  T  T  K  T  K  R  G  K  T  *  *  *  *  *  A  Q  *  V  S  Q  *  K  R  R  R  G  Y  R  I  W  I  *  *  E  N  C  K  F  *  S  G  C  S  T  W  R  *  S  L  *  G  V  *  A  S  *  E  Y  *  W  R  S  *  I  F  *  *  S  Y  *  F  Q  A  W  S  M  K  T  S  C  V  H  R  G  T  L  S  M  Y  *  L  L  W  *  *  F  *  F  Y  F  V  K  F  L  S  F  Y  *  H </second_frame>
            <third_frame>   *  S  N  Y  *  T  Q  S  L  V  I  Y  S  T  I  F  Y  Q  G  S  S  Y  V  L  P  T  L  T  *  S  S  R  P  K  I  I  K  K  M  D  Q  L  Q  P  Q  Q  P  V  Q  V  Y  P  N  N  P  N  N  F  P  N  Q  P  N  N  M  P  M  T  Q  S  S  S  S  H  N  S  S  N  G  S  F  V  S  V  F  V  V  L  A  I  V  F  V  I  S  V  I  A  C  V  V  G  R  L  C  S  K  K  S  N  G  A  N  K  V  K  K  S  S  H  G  Q  P  Q  K  Q  K  E  G  K  H  N  N  N  N  K  H  N  E  F  H  N  K  R  G  G  G  D  I  E  F  G  F  D  K  K  I  A  S  S  K  V  A  A  A  H  G  D  N  H  Y  K  G  S  K  P  H  K  N  T  N  G  G  V  R  F  S  D  N  H  I  D  F  K  L  G  P  *  K  L  V  V  F  I  E  E  L  S  L  C  T  N  Y  F  G  S  S  F  N  F  I  L  L  N  F  *  V  F  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125529" stop="126035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRPKIIKKMDQLQPQQPVQVYPNNPNNFPNQPNNMPMTQSSSSHNSSNGSFVSVFVVLAIVFVISVIACVVGRLCSKKSNGANKVKKSSHGQPQKQKEGKHNNNNKHNEFHNKRGGGDIEFGFDKKIASSKVAAAHGDNHYKGSKPHKNTNGGVRFSDNHIDFKLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 21 chains have been computed
$ 
$ memory statistics:
$ 104776 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 5514 bytes was the average size of a spliced alignment
$ 21744 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1672 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:43:47
-->
