<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:27:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319320" ref_strand="+" ref_description="SGN-U319320        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative, strong similarity to D-ribulose-5-phosphate 3-epimerase (Oryza sativa) GI:6007803; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family; contains non-consensus splice sites at exon 1 and exon2 | chr3:299996-302044 REVERSE | Aliases: F28J7.18, F28J7_18(evalue: 2e-101, score=365) genbank/nr: gi|53793730|gb|AAU93593.1| putative D-ribulose-5-phosphate 3-epimerase [Solanum demissum] (evalue: 5e-124, score=446)">
      <seq>ggcgattggcggccaatcggccgaattgggtggctgaaagttcaatggtagtaggtagaagggtaaccgtaatagtatatgtttagtgcaacaaattctcagtcgacgaaaagtaaaagacgactacaaccttcgccggcgccggaatttagattgaactgagaacataacggccgcaagtgaggaagatggtgaaggcaatcatagcaccgtcgatgctgtcatcggactttgctaatttggcctctgaagcagagcgcatgctcaattgtggtgcggattggctccatatggacatcatggacggtcactttgtcccaaaccttaccctcggtgctccaattatcgagagtctgagaaagcatacaaaggcatatctggactgccacctaatggtcaccaacccccttgattatgtggaaccgcttggcaaagctggtgcctcaggctttacgttccatattgaggcatctagagataattggcaagagcttgttcaacggataaagtctaagggcatgaaacctggggtttctttgaagcctggtacaccaattgaagaagtgtacccactgcttgatggtgaaaacgctatcgaactggtccttgttatgactgttgagcctggttttggtggacaaaagtttatgccagagatgatggataaggtacacactctcagaaaaaagtatccatcacttgatatagaggtggatggtggtctaggaccttcaaccattgaggcagcaacatcagctggagcaaactgcatagttgcaggaagttcagtatttggagctccagatccagcacaagtcataactttgctgcgaggcagtgtggaggaagctcagaaaaggagttgattccagaagaggcaagatctcgtgttgtattttaacaactattaccttatttataatttccgcggaatcaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6915" stop="2879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6613" g_stop="6465" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="176" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6464" i_stop="6369" i_length="96">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6368" g_stop="6243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="302" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6242" i_stop="4940" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4939" g_stop="4935" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="307" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4934" i_stop="4782" i_length="153">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4781" g_stop="4719" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="370" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4718" i_stop="4619" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4618" g_stop="4512" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="477" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4511" i_stop="4063" i_length="449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4062" g_stop="3965" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="575" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3964" i_stop="3792" i_length="173">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3791" g_stop="3699" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="668" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3698" i_stop="3611" i_length="88">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3610" g_stop="3569" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="710" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3568" i_stop="3411" i_length="158">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3410" g_stop="3179" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="942" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U319320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6613" e_stop="6465"/>
          <exon e_start="6368" e_stop="6243"/>
          <exon e_start="4939" e_stop="4935"/>
          <exon e_start="4781" e_stop="4719"/>
          <exon e_start="4618" e_stop="4512"/>
          <exon e_start="4062" e_stop="3965"/>
          <exon e_start="3791" e_stop="3699"/>
          <exon e_start="3610" e_stop="3569"/>
          <exon e_start="3410" e_stop="3179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGCTGAAAGTTAAATGGTAGTAGGTAGAAGGGTAACCGTAATAGTATATGTTTAGTGCAACAAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCGGTAGGTATTCTGAAGCTTGTATGAGATCCTTTTTTCTAGTTCCAAAAATAGACCCATTCTTCAACTGATTCATAAATTTGTTTGATTTCTTATTAGCAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATGGTAATTTTTGTTCCTTCCTCTTTCTAGCATTTGCTAAGTTATTTTTTTTTATCTTCATTATCAATTGTTTCATTGAAGTTAAAAAGAAAGATGTTAGTTTTTAGCAGAAAACTGTAGCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTGTGAGCTCTTGTTTTTACCATCTTTTGGTTGAAATTTAAGGAACAGATCTTTAAAGTTTTAATGCAAGTTGTTATTAGCATTGCGTGAATAGAGTGACGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGCATTGTAATACGAGAGTGATGCGTAGTTGATTGGTTGGTAGTTTTTTGTTTTTCTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATATCTCGATTAATTTTCTGCGACGTACCTATCACCTCCCACCAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTAATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTATTGAGAAGCTGATGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGCAAACTATAAGCTATGTGACATATTTGGAGTGTCTAATGAAGACTGAGAGAATCAGCTTCAATGACGACATTTTATACTTTGGGACCTTCTTGGTCCATTTAATGAAATGTCTTTTGCTTATCAAGAAAGAGACCATATAGTTACTAGTAACTATAATGACAGTAAGAAGGCTTATTGTACTTAAAAAATTAGAAGATAATATTGCACTTTACAAGTAAAGGTTAAATAGGTTTCTGATAACATCTGGACTTCCATTTTTAAATAATATAGTGGTTACCTTATTTATTTAGGTACAGTTCCATCTCTGAGGCTGTACATATCATGTGAAATTATCCCCTCCAGGATAAACTAGGTAGTTGTGCCAGTTCCTCTTGTTTGCTGTAACCCTATAGCACAATGAACTAACTAAATTGAGCTTAACCTCCTCAAGCTGGAATATTGATTGGTCTAGAATTGAGAATCCTATGCCAAGTGTGCTTCATCTGCTTCTTCTTAGATTGTGTTATAAGTGATACCTTCAGTCTTCTCTTCTTTAGCTCAATTGGTTTGGATATAAAGTGCTGTTGAAGTTGTTCCTTTAGTCACTTCATTCATCAATCATTAGCAGTTACTGAATGTTGTATTTGTGCATTGCAGGACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAGGTGTGGTTTACTTTGCGCTCTAGATCCATGAAGTATTTGAGGGACAGTCACTTTTTAGCGTTTGTAAGCTAATGTTAATATCTGTTCACTAGAATGTGATTTAGATAGATTGACTGATGTAGGGAAATGATGGGACTAGGGTATAAACTATGAGTAGTTAGTCGAAAAGGTTCAATAAAGAGGCTAACTGCATGTCAGTGTATTAATTAGTGGTGGTGGAACATTGTTGCATAAATATTGCTTTGTGCCCTAAGTACATTGAGTTGTTTTACTCTGTTTGTTGTGGAACAATTTGATTTGCTAATTGTTTTACTAGTTTAATGCAACCAAGACTGGAAAATGGTTTCCAGTAAAATATTTTGTACTCACACCTAAAAGATCCTTGATTTCTGCTGTCTTTGTTATCACAACTTTCATTTCTGTTACAAAGAAGGTATTAATCTTTGCAGATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGTTTCTTTGAAGCCTGGTACACCAATTGAAGAAGTGTACCCACTGGTAGTTATTCATTATCACATTTTATTAGTTTTATTAGCGAAAGGGTCAAGAATATAACAGAGTTTTGAAAAGGAAATCACTTGTTGCTATTGCTGTTAGTGAAACAAGAACAAATTTAATGATATCTTCAAAATACCTGTCATGATACACCAGTTTGCATGTATATTTTACAGCTTGATGGTGAAAACGCTATCGAACTGGTCCTTGTTATGACTGTTGAGCCTGGTTTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAGGTGAGAAAACAATTTGGCATTCTCAAAATTGGAGATCATTCATCATTTTCTGCATAATAACTTAAAGAGCCTCTCTTTCAATTTTTAGGTACACACTCTCAGAAAAAAGTATCCATCACTTGATATAGAGGTGAGCTTTTGTTTCTTGATGGTTTAATTCTAGTTTTTGGATATCCTGACATTTTCTCACAGACCATTCCCTCGTGCATTTTCCATTTCTTGAGTTATCATGTAGTCAAGTCGTACTGGGTTTGTGCTTAATCATCCGTATGAACTTTTGTGATACAGGTGGATGGTGGTCTAGGACCTTCAACCATTGAGGCAGCAACATCAGCTGGAGCAAACTGCATAGTTGCAGGAAGTTCAGTATTTGGAGCTCCAGATCCAGCACAAGTCATAACTTTGCTGCGAGGCAGTGTGGAGGAAGCTCAGAAAAGGAGTTGATTCCAGAAGAGGCAAGATCTCGTGTTGTATTTTAACAACTATTACCTTATTTATAATTTCCGCGGAATCAATATCT</genome_strand>
        <mrna_strand>GGGTGGCTGAAAGTTCAATGGTAGTAGGTAGAAGGGTAACCGTAATAGTATATGTTTAGTGCAACAAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCG................................................................................................CAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGG.........................................................................................................................................................TCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAA....................................................................................................GGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGTTTCTTTGAAGCCTGGTACACCAATTGAAGAAGTGTACCCACTG.............................................................................................................................................................................CTTGATGGTGAAAACGCTATCGAACTGGTCCTTGTTATGACTGTTGAGCCTGGTTTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAG........................................................................................GTACACACTCTCAGAAAAAAGTATCCATCACTTGATATAGAG..............................................................................................................................................................GTGGATGGTGGTCTAGGACCTTCAACCATTGAGGCAGCAACATCAGCTGGAGCAAACTGCATAGTTGCAGGAAGTTCAGTATTTGGAGCTCCAGATCCAGCACAAGTCATAACTTTGCTGCGAGGCAGTGTGGAGGAAGCTCAGAAAAGGAGTTGATTCCAGAAGAGGCAAGATCTCGTGTTGTATTTTAACAACTATTACCTTATTTATAATTTCCGCGGAATCAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336787" ref_strand="+" ref_description="SGN-U336787        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative, strong similarity to D-ribulose-5-phosphate 3-epimerase (Oryza sativa) GI:6007803; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family; contains non-consensus splice sites at exon 1 and exon2 | chr3:299996-302044 REVERSE | Aliases: F28J7.18, F28J7_18(evalue: 2e-48, score=110) genbank/nr: gi|53793730|gb|AAU93593.1| putative D-ribulose-5-phosphate 3-epimerase [Solanum demissum] (evalue: 6e-60, score=130)">
      <seq>ccctttaattctcagtcgacgaaaagtaaaagacgactacaaccttcgccggcgccggaatttagattgaactgagaacataacggccgcaagtgaggaagatggtgaaggcaatcatagcaccgtcgatgctgtcatcggactttgctaatttggcctctgaagcagagcgcatgctcaattgtggtgcggattggctccatatggacatcatggacgggtaggtcagttagtcaggtcaagctctggttgtatccatgttaaaatgatgggtggatagttgaataaaaattctgctcgttggatttttttcagatttctaaacacaaaaggcactgtaatactctttttttcccacttgtctgttttgcagtcactttgtcccaaaccttaccctcggtgctccaattatcgagagtctgagaaagcatacaaagtatggtttaatgatttcttaatgatttctctctttcaacttgatttttcttgtccataatttatttatcgtacaatgaagttgttctaaatttctacagggcatatctggactgccacctaatggtcaccaacccccttgattatgtggaaccgcttggcaaagctggtgcctcaggctttacgttccatattgaggcatctagagataattggcaagagcttgttcaacggataaagtctaagggcatgaatcctggggtttctttgaagcctggtacaccaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6847" stop="3679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6553" g_stop="6465" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6464" i_stop="6369" i_length="96">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6368" g_stop="6243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="215" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6242" i_stop="4940" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4939" g_stop="4512" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="643" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4511" i_stop="4063" i_length="449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4062" g_stop="3979" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="728" r_length="85" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U336787" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6553" e_stop="6465"/>
          <exon e_start="6368" e_stop="6243"/>
          <exon e_start="4939" e_stop="4512"/>
          <exon e_start="4062" e_stop="3979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCGGTAGGTATTCTGAAGCTTGTATGAGATCCTTTTTTCTAGTTCCAAAAATAGACCCATTCTTCAACTGATTCATAAATTTGTTTGATTTCTTATTAGCAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATGGTAATTTTTGTTCCTTCCTCTTTCTAGCATTTGCTAAGTTATTTTTTTTTATCTTCATTATCAATTGTTTCATTGAAGTTAAAAAGAAAGATGTTAGTTTTTAGCAGAAAACTGTAGCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTGTGAGCTCTTGTTTTTACCATCTTTTGGTTGAAATTTAAGGAACAGATCTTTAAAGTTTTAATGCAAGTTGTTATTAGCATTGCGTGAATAGAGTGACGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGCATTGTAATACGAGAGTGATGCGTAGTTGATTGGTTGGTAGTTTTTTGTTTTTCTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATATCTCGATTAATTTTCTGCGACGTACCTATCACCTCCCACCAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTAATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTATTGAGAAGCTGATGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGCAAACTATAAGCTATGTGACATATTTGGAGTGTCTAATGAAGACTGAGAGAATCAGCTTCAATGACGACATTTTATACTTTGGGACCTTCTTGGTCCATTTAATGAAATGTCTTTTGCTTATCAAGAAAGAGACCATATAGTTACTAGTAACTATAATGACAGTAAGAAGGCTTATTGTACTTAAAAAATTAGAAGATAATATTGCACTTTACAAGTAAAGGTTAAATAGGTTTCTGATAACATCTGGACTTCCATTTTTAAATAATATAGTGGTTACCTTATTTATTTAGGTACAGTTCCATCTCTGAGGCTGTACATATCATGTGAAATTATCCCCTCCAGGATAAACTAGGTAGTTGTGCCAGTTCCTCTTGTTTGCTGTAACCCTATAGCACAATGAACTAACTAAATTGAGCTTAACCTCCTCAAGCTGGAATATTGATTGGTCTAGAATTGAGAATCCTATGCCAAGTGTGCTTCATCTGCTTCTTCTTAGATTGTGTTATAAGTGATACCTTCAGTCTTCTCTTCTTTAGCTCAATTGGTTTGGATATAAAGTGCTGTTGAAGTTGTTCCTTTAGTCACTTCATTCATCAATCATTAGCAGTTACTGAATGTTGTATTTGTGCATTGCAGGACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAGGTGTGGTTTACTTTGCGCTCTAGATCCATGAAGTATTTGAGGGACAGTCACTTTTTAGCGTTTGTAAGCTAATGTTAATATCTGTTCACTAGAATGTGATTTAGATAGATTGACTGATGTAGGGAAATGATGGGACTAGGGTATAAACTATGAGTAGTTAGTCGAAAAGGTTCAATAAAGAGGCTAACTGCATGTCAGTGTATTAATTAGTGGTGGTGGAACATTGTTGCATAAATATTGCTTTGTGCCCTAAGTACATTGAGTTGTTTTACTCTGTTTGTTGTGGAACAATTTGATTTGCTAATTGTTTTACTAGTTTAATGCAACCAAGACTGGAAAATGGTTTCCAGTAAAATATTTTGTACTCACACCTAAAAGATCCTTGATTTCTGCTGTCTTTGTTATCACAACTTTCATTTCTGTTACAAAGAAGGTATTAATCTTTGCAGATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGTTTCTTTGAAGCCTGGTACACCAA-TTGAAG</genome_strand>
        <mrna_strand>CCCTTTAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCG................................................................................................CAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAATCCTGGGGTTTCTTTGAAGCCTGGTACACCAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319319" ref_strand="+" ref_description="SGN-U319319        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative, strong similarity to D-ribulose-5-phosphate 3-epimerase (Oryza sativa) GI:6007803; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family; contains non-consensus splice sites at exon 1 and exon2 | chr3:299996-302044 REVERSE | Aliases: F28J7.18, F28J7_18(evalue: 7e-38, score=94) genbank/nr: gi|53793730|gb|AAU93593.1| putative D-ribulose-5-phosphate 3-epimerase [Solanum demissum] (evalue: 2e-48, score=114)">
      <seq>cgggctggaggcaaattctcagtcgacgaaaagtaaaagacgactacaaccttcgccggcgccggaatttagattgaactgagaacataacggccgcaagtgaggaagatggtgaaggcaatcatagcaccgtcgatgctgtcatcggactttgctaatttggcctctgaagcagagcgcatgctcaattgtggtgcggattggctccatatggacatcatggacgggtaggtcagttagtcaggtcaagctctggttgtatccatgttaaaatgatgggtggatagttgaataaaaattctgctcgttggatttttttcagatttctaaacacaaaaggcactgtaatactctttttttcccacttgtctgttttgcagtcactttgtcccaaaccttaccctcggtgctccaattatcgagagtctgagaaagcatacaaagtatggtttaatgatttcttaatgatttctctctttcaacttgatttttcttgtccataatttatttatcgtacaatgaagttgttctaaatttctacagggcatatctggactgccacctaatggtcaccaacccccttgattatgtggaaccgcttggcaaagctggtgcctcaggctttacgttccatattgaggcatctagagataattggcaagagcttgttcaacggataaagtctaagggcatgaaacctgggggtttctttgaagcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6849" stop="3692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6548" g_stop="6465" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="96" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6464" i_stop="6369" i_length="96">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6368" g_stop="6243" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="222" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6242" i_stop="4940" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4939" g_stop="4512" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="650" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4511" i_stop="4063" i_length="449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4062" g_stop="3992" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="722" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U319319" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6548" e_stop="6465"/>
          <exon e_start="6368" e_stop="6243"/>
          <exon e_start="4939" e_stop="4512"/>
          <exon e_start="4062" e_stop="3992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCGGTAGGTATTCTGAAGCTTGTATGAGATCCTTTTTTCTAGTTCCAAAAATAGACCCATTCTTCAACTGATTCATAAATTTGTTTGATTTCTTATTAGCAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATGGTAATTTTTGTTCCTTCCTCTTTCTAGCATTTGCTAAGTTATTTTTTTTTATCTTCATTATCAATTGTTTCATTGAAGTTAAAAAGAAAGATGTTAGTTTTTAGCAGAAAACTGTAGCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTGTGAGCTCTTGTTTTTACCATCTTTTGGTTGAAATTTAAGGAACAGATCTTTAAAGTTTTAATGCAAGTTGTTATTAGCATTGCGTGAATAGAGTGACGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGCATTGTAATACGAGAGTGATGCGTAGTTGATTGGTTGGTAGTTTTTTGTTTTTCTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATATCTCGATTAATTTTCTGCGACGTACCTATCACCTCCCACCAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTAATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTATTGAGAAGCTGATGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGCAAACTATAAGCTATGTGACATATTTGGAGTGTCTAATGAAGACTGAGAGAATCAGCTTCAATGACGACATTTTATACTTTGGGACCTTCTTGGTCCATTTAATGAAATGTCTTTTGCTTATCAAGAAAGAGACCATATAGTTACTAGTAACTATAATGACAGTAAGAAGGCTTATTGTACTTAAAAAATTAGAAGATAATATTGCACTTTACAAGTAAAGGTTAAATAGGTTTCTGATAACATCTGGACTTCCATTTTTAAATAATATAGTGGTTACCTTATTTATTTAGGTACAGTTCCATCTCTGAGGCTGTACATATCATGTGAAATTATCCCCTCCAGGATAAACTAGGTAGTTGTGCCAGTTCCTCTTGTTTGCTGTAACCCTATAGCACAATGAACTAACTAAATTGAGCTTAACCTCCTCAAGCTGGAATATTGATTGGTCTAGAATTGAGAATCCTATGCCAAGTGTGCTTCATCTGCTTCTTCTTAGATTGTGTTATAAGTGATACCTTCAGTCTTCTCTTCTTTAGCTCAATTGGTTTGGATATAAAGTGCTGTTGAAGTTGTTCCTTTAGTCACTTCATTCATCAATCATTAGCAGTTACTGAATGTTGTATTTGTGCATTGCAGGACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAGGTGTGGTTTACTTTGCGCTCTAGATCCATGAAGTATTTGAGGGACAGTCACTTTTTAGCGTTTGTAAGCTAATGTTAATATCTGTTCACTAGAATGTGATTTAGATAGATTGACTGATGTAGGGAAATGATGGGACTAGGGTATAAACTATGAGTAGTTAGTCGAAAAGGTTCAATAAAGAGGCTAACTGCATGTCAGTGTATTAATTAGTGGTGGTGGAACATTGTTGCATAAATATTGCTTTGTGCCCTAAGTACATTGAGTTGTTTTACTCTGTTTGTTGTGGAACAATTTGATTTGCTAATTGTTTTACTAGTTTAATGCAACCAAGACTGGAAAATGGTTTCCAGTAAAATATTTTGTACTCACACCTAAAAGATCCTTGATTTCTGCTGTCTTTGTTATCACAACTTTCATTTCTGTTACAAAGAAGGTATTAATCTTTGCAGATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCT-GGGGTTTCTTTGAAGCCTGGT</genome_strand>
        <mrna_strand>AAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCG................................................................................................CAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGGTTTCTTTGAAGCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340629" ref_strand="+" ref_description="SGN-U340629        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttcattatcattgaagttaaaaagaaagatgttaatttttagcagaaaactgtatctgcttgaagttagaaagaaatatgttaatgttcgctacagaaaattgtagcggcttctgagctcttgtttttaccatcttttgattgaaatttaaggaacagatttttaaagtttaaatgcaagttgttattagcattacgtgaatagagtgaagcaaattagcaatacagaggattcatggagctctgtataataatacgagagtgatgcatagttgattggttggtagtttttgtttttttgagaattgtggtgtatgggccagctttcgcatacctcgatttattctacgacgtacctatcacctcccacaagcaacaggtaccgggtgattttgtccaccaaggctaggatggataggatagtgtgttgttattagctaggtctttaaaggcaattgttatgcagaacaatgtgatctcctatgtagttgagtatcatgaaaacaaagtggaaacattgtgttgaaaatctggtgtgaagaatttgccaaactattgaattcttgcattactttccccttcagttttcaacaagtaataggcaactataagctatgtgacatatttggagtgtctaatgatgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6475" stop="5231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6182" g_stop="5530" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U340629" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6182" e_stop="5530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGTTTCATTGAAGTTAAAAAGAAAGATGTTAGTTTTTAGCAGAAAACTGTAGCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTGTGAGCTCTTGTTTTTACCATCTTTTGGTTGAAATTTAAGGAACAGATCTTTAAAGTTTTAATGCAAGTTGTTATTAGCATTGCGTGAATAGAGTGACGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGCATTGTAATACGAGAGTGATGCGTAGTTGATTGGTTGGTAGTTTTTTGTTTTTCTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATATCTCGATTAATTTTCTGCGACGTACCTATCACCTCCCACCAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTAATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTATTGAGAAGCTGATGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGCAAACTATAAGCTATGTGACATATTTGGAGTGTCTAATGAAGACTGA</genome_strand>
        <mrna_strand>TTCA-T-TATCATTGAAGTTAAAAAGAAAGATGTTAATTTTTAGCAGAAAACTGTATCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTCTGAGCTCTTGTTTTTACCATCTTTTGATTGAAATTTAAGGAACAGATTTTTAAAGTTTAAATGCAAGTTGTTATTAGCATTACGTGAATAGAGTGAAGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGTATAATAATACGAGAGTGATGCATAGTTGATTGGTTGGTAG-TTTTTGTTTTTTTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATACCTCGATTTA--TTCTACGACGTACCTATCACCTCCCACAAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTGATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTGTTGAAAATCTGGTGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGC-AACTATAAGCTATGTGACATATTTGGAGTGTCTAATGATGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328534" ref_strand="+" ref_description="SGN-U328534        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:19060759-19064163 FORWARD | Aliases: F11C10.11(evalue: 4e-127, score=451) genbank/nr: gi|53793729|gb|AAU93592.1| hypothetical protein PGEC472P22.15 [Solanum demissum] (evalue: 2e-175, score=618)">
      <seq>tcttctttgactcttctaagccaaaaaaatccatcgacttgatttttaccttcttaaacttctttagcattgattcttgatacttttctcttgcagatttgctgtttttgtttttttttttttttcaattttttctagcaaagttcaaattttgctggcactttgttcaatagatgttactgtaagacaaagggttggattcagatagccaccttcaaggcaaaggtgattagttttccaactttccatatgcctaattatagcagtgctatgttggagcttcatggagatatctaatgtgcttggagttgagctaaaatgaagaccaccaagccaatcaaagcagaaaaaaaactgcagccaaacaacacagaaaagaaaccatcaattcaggcttctcacgaggcccaaaatgaccagcagaaccatatagcagatacccctgtagctgatgcaggttctgtttctgcatcaggcaatgataacagaaaagtttcacgtgaagatattgaacttgtccaaaacttgattgaaaggtgcttgcagttgtatatgaataaggatgaagtcgtaaaaacacttctgaatcgtgcaaggatagatcctggattcacaactctagtttggcaaaaattagaagaagaaaatgcagatttctttcgggcctactacattaggcttaaactgaagaaacaaatcgtcctgttcaatcatttgcttgagcaccagtatcatctgatgaaatatccagtgcctccaaaagttccgttggctcctatgcagaatgggattagtaccatgccagtcaacaacttacccatgggatatcccgtcctgcagcaacctccagttccagctgcaggtcaacctcatcttgatccaatgggcatgtccaactgccacgtggttaatggtgtgcctgcaccaggaaactatcatccgatgaggatgaattcaggaaacgagatggtgattgataccagtgtggcagatgtagcagcagctgttccacctggcaatgccatgtcatctatgtcagatatggctgttagccctacatcagtagcttccagcggccattttccctttaccgcttcagagatttcgggtatgggagttgacacctcagcccttgatgctgcctttccatctgatgtagcaagttcagtgggattacaactaccaccagataatggtgttggtaattctagggattcacttagatcttttgctcagattccttggaactttagtctttcaaatctaacagcagatctgtcaaacttgggaggtaagttaacttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15976" stop="10247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15676" g_stop="15454" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15453" i_stop="13268" i_length="2186">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13267" g_stop="13160" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="333" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13159" i_stop="12868" i_length="292">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12867" g_stop="12685" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="516" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12684" i_stop="12589" i_length="96">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12588" g_stop="12483" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="622" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12482" i_stop="12320" i_length="163">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12319" g_stop="12137" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="805" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12136" i_stop="11535" i_length="602">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11534" g_stop="11375" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="965" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11374" i_stop="10889" i_length="486">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10888" g_stop="10547" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1307" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U328534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1305</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15676" e_stop="15454"/>
          <exon e_start="13267" e_stop="13160"/>
          <exon e_start="12867" e_stop="12685"/>
          <exon e_start="12588" e_stop="12483"/>
          <exon e_start="12319" e_stop="12137"/>
          <exon e_start="11534" e_stop="11375"/>
          <exon e_start="10888" e_stop="10547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTGACTCTTCTAAGCCAAAAAAATCCATCGACTTGATTTTTACCTTCTTAAACTTCTTTAGCATTGATTCTTGATACTTTTCTCTTGCAGATTTGCTGTTTTTG--TTTTTTTTTTTTTCAATTTTTTCTAGCAAAGTTCAAATTTTGCTGGCACTTTGTTCAATAGATGTTACTGTAAGACAAAGGGTTGGATTCAGATAGCCACCTTCAAGGCAAAGGTTTGGTCTTTTTTGGGTTTCTCTTGGTTGTACAAAGCATTTTTTGAGTTGGGTTTTAGGGGTTTATGTTTTTTTTTTTTATATGTTTTTATTTGCATACTTTGTGTCATTTCTGAATTGGGTGTTTGAATCAGCTGTTACTTTGCTTAAGTTTAGGGTTTTGGCTCTTAATACTAGGTTGTTGTCTGTTTGAATCCTTGTTAGGGATTTTATCAGAGTGGTGTTTGTATGATTAGTTGTGTGTTACCAAGTGATTTTTGAATAACCCCACAGTCTTGATTTTCTGGTAAAAGATAATCTTGATTGGAAAAATGGTAACTTTTGTGCTACTAGATTTGAGATCTTTGATAATTTCTACTACAACAACATACGCGGTGTATGGGGGGTAGAGTGTATCAGACCTAACTCTTATCTCGAGGAGGTAGAGATGCTGATAATGTCTTTTAGTACTATGTAATTTCTATCATGTCAAGCTGGAGGTCTTGTACTAGGCTCTTGCAATGTAGGTATCTTTATTTTTGCCTATTAGATGATGATTGAATTACTTTTAATGAAATGCAAATTGTTGTTTTGATTTCTTATCCCACCAGAGCTGCTTTCTGCAGTTCAGCTTTTGATTAAAGACTTTATGGATTCCTATTAAAGTCAAGCATTTGGTTGAAAAGGCTTAATCTTTTCTGTGAGTTAAAGTCATTCATTCTGTAGAAAAGTCTTAACCTTTTGTGGAGAACTTTTTGATGAGTTGATTCTTTTTTATAACCTTTTTCAGGATTCTTTGTTATGGTAATCTCATACATGTGATGGTTTGCTGATGCTACAGTTTGTTTGTATGAATTTTCACTTTTGGGGTCTCTGTAGGGTAAACATTCTGAGATTTTGAAGGAGCCAAAATACATGAGAAGTATAAATTTTCTAGGACAGTGTTTCTCTCTAGTGTTGCTCCTACAATGTAGAATCCAGATCTGGATAGGTTGTAAACAGTGGACAGAGAAAAAATGAGACTTTTTTTGAAGCCAATCTCTAGTATTCTCCAAATCAATTTTTCCATTTTCAACAGTATTAGCCCCTCCATTTTCTTAGTTCTTGCATTATTTGAAGATATTACAGCTTGAGCACTATACAATGCAAATGGGGTAATATCAGTATTTAAGTCAGTAGGTATGGAGTAGTTACCCTTGTCTCAAAAAAAAAGTCAGTAGGTATGGAGCACATACAATTTTGGGATGAGACTTTTTGGCGATACTCAGTTGTTACTTGAGGATTTAGAGCTTTATGAACAAAATAGACAAATAATATAAGCTAAATAACTCTTTTTAGAATATAATGGAAGTTGGGAAATCAGAAGAGATGAACATTTTATTGCGATAGGGTGGCAGGTCATGTTCCATGAACCTTAATGCTGCAAAGGCTGACCGGAGCACTAAGCATCCCATATTCACGCAGGGTCCGGGGAAGGACTGCCACTTAGGGGTGTGATGTAGGTACTAACTTGATGCAAGCATCAATGACTGATTTCACAGCTCGAACCCATGACCTATAGGCTATAGGTCACACAGAAACAACTATACCATTCCTCCAAGTCTCTCCTTAATGCTGCAGTACTTGATTAATAGTTCAAACTCCCAGAAAGTTGGAGTAGTCTATCGGTTGTGTACGAATTACCTTGGGGGATCACAATAGTGGTACCTATAGAGTCTGTTTTATATCTCCATCTGAATGCATTTTTCCAGCCATGACTTTGATATTCCTCGGTATATTGTATATGCATTAGTATGAAATAAGTTCTTATCTCAAGATCCTGAAAGAAGATTCTCCAAGGATCATTATATTATGCCCAAAAAGGGGATATTTCTGTGCAAGTAACATCAAATTCATTTACTATCCATAGCAATAGGTTAATTTCTATATTTTTATAGCTTGTTCCTTGTCTGGAATAGATTCTCTTTTTTCAGTTTAACCCAAAAATAAGTATCATGTATCAGTTTCAATCTAGGGAGTGGGAGTACAAAGGTTCTTTTTAGACTTGACACATGATCCTAAAATATATCAGTCTCTTTTATTGAAAATGATATTTTCTTTCTCAATTCTGAAACTTTATGCTAAAACTTTCAACCTTCAGTTCCACTCTGTTGTTGAACTCGTGTGATTTTTTGTATCTTCTTATTGATGGTACCTTTTATTCTCAGGTGATTAGTTTTCCAACTTTCCATATGCCTAATTATAGCAGTGCTATGTTGGAGCTTCATGGAGATATCTAATGTGCTTGGAGTTGAGCTAAAATGAAGACCACCAAGGTTGTTATTCTGTATTTCAGCGAGTTCCCTTTCTTGTAATCTGATCTTTCATTTCTTGCTGTTATATGTGCATTCTTTTGGCAATGCGGCCTATCATTTTTCTAATGGTATTGAAATGCTGCTAATTGGAAACAATATTATATAATGATGCACTCTACTAAATGGTTAGAGAATAATTATTTTTTCTAAAGTTCTGAAGTGCTTATGATTTTAAGTTAAAAATTATCTGTTGGATAGCTATTATTCATATATGGAATCTGTTTTCTTCTAATATATTACGAAAAAACTACAGCCAATCAAAGCAGAAAAAAAACTGCAGCCAAACAACACAGAAAAGAAACCATCAATTCAGGCTTCTCACGAGGCCCAAAATGACCAGCAGAACCATATAGCAGATACCCCTGTAGCTGATGCAGGTTCTGTTTCTGCATCAGGCAATGATAACAGAAAAGTTTCACGTGAAGATATTGAACTTGTAAGACAGTCTTTAAGTTCTTTATTATGCCTGGATATTATTCATTGGGAAGTTTTACCGGGGTCTTTTAACTTTATGATGACATATTTGTTGCAGGTCCAAAACTTGATTGAAAGGTGCTTGCAGTTGTATATGAATAAGGATGAAGTCGTAAAAACACTTCTGAATCGTGCAAGGATAGATCCTGGATTCACAACTCTAGGTAGGTACATGAGTTACTGATGAAGTTGCTTATGAATCTGTCTGCTTGCATTATATATGCTGTCTACTGTCTCACATGTATAGTTACACTATGACTATGGTTATTGGGTGGTCACTTTAGATCTTCAGTTTCTAACTTTAATATCTTTTCAAATTGTGTACAGTTTGGCAAAAATTAGAAGAAGAAAATGCAGATTTCTTTCGGGCCTACTACATTAGGCTTAAACTGAAGAAACAAATCGTCCTGTTCAATCATTTGCTTGAGCACCAGTATCATCTGATGAAATATCCAGTGCCTCCAAAAGTTCCGTTGGCTCCTATGCAGAATGGGATTAGTACCATGCCAGGTATCTTTATTTGTCGTATGAAGGTGAATATTACTGTATTGTGCTGCTTCAGGATTAGATTTGGAAATGTTGAGGTTGTCCAATCATCAACTACTGATCCTTTTCTATGTCTTCCTTTGCCATCTATTCGTTTTGTGAACATGTAGAAGATAGGTAACCCTCCAGTTGTAGTGGAGGGTCAACTGTACTAATCTTTATTAGCAAAGAAGCTTGTCTCTTCTGCATAATGTCTATTAAATGGTTTGGAATGGGAAAAGAAATTCGTGTTGGCTTATAACTTTATTTGGACAACGCCTGCATTCTTGAATGGACCAAATGGAGGCACTCTATGGAGGGGAAATGTAGAGAGTTATGCAATATGAGTCATCCTTATAAAAACAAAGTTTATACAACATAAATTATTAGAAAATATGTAGTTCAACTGGCCCTTTGCACTTGCTTTCTTCTGCTTCCTTTCTTCCTCAGTATTGAGTAACATGACTTTTCAAATTGGAATTAAGCTGTTTGAATAGCATGGGGATTAATATTATTTTCAGAACAGGTAAATGAGTCCTTTTTAGATTTATTAGCATTTTATTTAATGTCACTTGTTTCTGGTGCAGTCAACAACTTACCCATGGGATATCCCGTCCTGCAGCAACCTCCAGTTCCAGCTGCAGGTCAACCTCATCTTGATCCAATGGGCATGTCCAACTGCCACGTGGTTAATGGTGTGCCTGCACCAGGAAACTATCATCCGATGAGGATGAATTCAGGAAACGAGTGAGAATCTCTCTTTGTTTAGGATTTTAGGCCTCTTTGATTCTAAAATAGAAATTTATGAGCTATTTAATTTTTTTCCTGGTTAGCCAGATGGCTGTGGTACTTGTTTCAGTTGTTTGCTCAGCATCTTACTTGCCATGTGCTCAAAGAGTTGCCATTTGACTATTTCCAGTACATCTAATTCGCGGTTTCCCAGAGTTAGTAGGAACTGAAATTGCATTGATGTTTCATATTGGTTTAAAATGAGTGTAGATTAGGAAAAGATGTTGCTCTTATGTAAATATTTCAAACCTAGTACTTGTTTCTTGTTGTCCATGCGTTGTTTGTTAAGGAAATGAGGTTCATGTCTTCTTTTTAATGATGATTAAGTAAGCTGATTGTCGAAGTGAATATATCTTTGGGCTTCTGGGATGAAAAGATGTTTATATTTGTTGAAGGAGACGTGGCATGACAAATGACACTTTACACATTGTTCTCTGCTGACAGGATGGTGATTGATACCAGTGTGGCAGATGTAGCAGCAGCTGTTCCACCTGGCAATGCCATGTCATCTATGTCAGATATGGCTGTTAGCCCTACATCAGTAGCTTCCAGCGGCCATTTTCCCTTTACCGCTTCAGAGATTTCGGGTATGGGAGTTGACACCTCAGCCCTTGATGCTGCCTTTCCATCTGATGTAGCAAGTTCAGTGGGATTACAACTACCACCAGATAATGGTGTTGGTAATTCTAGGGATTCACTTAGATCTTTGGCTCAGATTCCTTGGAACTTTAGTCTTTCAGATCTAACAGCAGATCTGTCAAACTTGGGAGGTAAGTTAACTTATGC</genome_strand>
        <mrna_strand>TCTTCTTTGACTCTTCTAAGCCAAAAAAATCCATCGACTTGATTTTTACCTTCTTAAACTTCTTTAGCATTGATTCTTGATACTTTTCTCTTGCAGATTTGCTGTTTTTGTTTTTTTTTTTTTTTCAATTTTTTCTAGCAAAGTTCAAATTTTGCTGGCACTTTGTTCAATAGATGTTACTGTAAGACAAAGGGTTGGATTCAGATAGCCACCTTCAAGGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTAGTTTTCCAACTTTCCATATGCCTAATTATAGCAGTGCTATGTTGGAGCTTCATGGAGATATCTAATGTGCTTGGAGTTGAGCTAAAATGAAGACCACCAAG....................................................................................................................................................................................................................................................................................................CCAATCAAAGCAGAAAAAAAACTGCAGCCAAACAACACAGAAAAGAAACCATCAATTCAGGCTTCTCACGAGGCCCAAAATGACCAGCAGAACCATATAGCAGATACCCCTGTAGCTGATGCAGGTTCTGTTTCTGCATCAGGCAATGATAACAGAAAAGTTTCACGTGAAGATATTGAACTT................................................................................................GTCCAAAACTTGATTGAAAGGTGCTTGCAGTTGTATATGAATAAGGATGAAGTCGTAAAAACACTTCTGAATCGTGCAAGGATAGATCCTGGATTCACAACTCTAG...................................................................................................................................................................TTTGGCAAAAATTAGAAGAAGAAAATGCAGATTTCTTTCGGGCCTACTACATTAGGCTTAAACTGAAGAAACAAATCGTCCTGTTCAATCATTTGCTTGAGCACCAGTATCATCTGATGAAATATCCAGTGCCTCCAAAAGTTCCGTTGGCTCCTATGCAGAATGGGATTAGTACCATGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACTTACCCATGGGATATCCCGTCCTGCAGCAACCTCCAGTTCCAGCTGCAGGTCAACCTCATCTTGATCCAATGGGCATGTCCAACTGCCACGTGGTTAATGGTGTGCCTGCACCAGGAAACTATCATCCGATGAGGATGAATTCAGGAAACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGATTGATACCAGTGTGGCAGATGTAGCAGCAGCTGTTCCACCTGGCAATGCCATGTCATCTATGTCAGATATGGCTGTTAGCCCTACATCAGTAGCTTCCAGCGGCCATTTTCCCTTTACCGCTTCAGAGATTTCGGGTATGGGAGTTGACACCTCAGCCCTTGATGCTGCCTTTCCATCTGATGTAGCAAGTTCAGTGGGATTACAACTACCACCAGATAATGGTGTTGGTAATTCTAGGGATTCACTTAGATCTTTTGCTCAGATTCCTTGGAACTTTAGTCTTTCAAATCTAACAGCAGATCTGTCAAACTTGGGAGGTAAGTTAACTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342538" ref_strand="+" ref_description="SGN-U342538        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaattctgattccttaattttgtttggaattattaacaatttttactaaaatatgggtttctgaaaaaacccttttttttacaagattgaaacaattaaggtttcaatttcaagaacatattttttattcttaaatttcaaatacattcattgaattgcatgtttgtattcatttcttgagctcccagataatattctggctcattagataataatatcaaggggttgattagtgaatcacctcaaattttcaagaaaaaagaggagtgaatgagtgatttcagctgctggggagttgaaagttgattgctttttttatatgtgaaaaaagggaatgttttgttgaggatttttgaagagttgtagaatgggatagatgaaggaatttggtgttgttgtatttgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29532" stop="28393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29232" g_stop="28969" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="28837" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28836" g_stop="28693" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="408" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U342538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29232" e_stop="28969"/>
          <exon e_start="28836" e_stop="28693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTGATTCCTTAATTTTGTTTGGAATTATTAACAATTTTTACTAAAATATGGGTTTCTGAAAAAACCCTTTTTTTTACAAGATTGAAACAATTAAGGTTTCAATTTCAAGAACATATTTTTTATTCTTAAATTTCAAATACATTCATTGAATTGCATGTTTGTATTCATTTCTTGAGCTCCCAGATAATATTCTGGCTCATTAGATAATAATATCAAGGGGTTGATTAGTGAATCACCTCAAATTTTCAAGAAAAAAGAGGTAAAAATCCAATCTTTTTGTTATAAAATGAGACCCTTTTTGGTTAATTGAATTTATTGGAATTTTCTGGATTTTATTTTGTGTAATGTGAAAAAATGGTGACTTATTGGGGATTTTTTCATGTTGTTGTAGGAGTGAATGAGTGATTTCAGCTGCTGGGGAGTTGAAAGTTGATTGCTTTTTTTATATGTGAAAAAAGGGAATGTTTTGTTGAGGATTTTTGAAGAGTTGTAGAATGGGATAGATGAAGGAATTTGGTGTTGTTGTATTTGTAGC</genome_strand>
        <mrna_strand>AAATTCTGATTCCTTAATTTTGTTTGGAATTATTAACAATTTTTACTAAAATATGGGTTTCTGAAAAAACCCTTTTTTTTACAAGATTGAAACAATTAAGGTTTCAATTTCAAGAACATATTTTTTATTCTTAAATTTCAAATACATTCATTGAATTGCATGTTTGTATTCATTTCTTGAGCTCCCAGATAATATTCTGGCTCATTAGATAATAATATCAAGGGGTTGATTAGTGAATCACCTCAAATTTTCAAGAAAAAAGAG....................................................................................................................................GAGTGAATGAGTGATTTCAGCTGCTGGGGAGTTGAAAGTTGATTGCTTTTTTTATATGTGAAAAAAGGGAATGTTTTGTTGAGGATTTTTGAAGAGTTGTAGAATGGGATAGATGAAGGAATTTGGTGTTGTTGTATTTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325201" ref_strand="+" ref_description="SGN-U325201        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABA-responsive protein (HVA22c), identical to AtHVA22c (Arabidopsis thaliana) GI:4884936 | chr1:26223901-26225487 FORWARD | Aliases: T6C23.10, T6C23_10(evalue: 1e-62, score=236) genbank/nr: gi|53793732|gb|AAU93595.1| putative TB2/DP1, HVA22 family protein [Solanum demissum] (evalue: 2e-94, score=347)">
      <seq>taatagccactcctctctagtactactgtttcttactagttgagtgttcattcaacaaaaaaatgggttcagacaacaatgttcttgctgtaattgccaaaaatattgatgttcttgctttgcctctaatctctcttgtttatcctctgtatacatctattaaggcaattgaaacaaagtctcgtgcagatgatcgacaatggctaacgtattgggttctttattctttgattactctctttgaacttagcttttctaagctcattgaatggtttccaatatggtcttatgcaaaactagctgcaatatgttggctagttttaccttacttcaatggagcatgttatgtttatgagaattttataagaccattttatagaaatccacaagttaaaatatggtatgttcctttgaagaaggatatttttagtaagccagatgatgttctaactgctgctgaaaaatatattgaagaacatggaccacaagcatttgaaaggcttttagccaaggctgatagagatgcaagaaccaggaggaacaactacatgacctttgatgatgattatcgatattaattaatttctctttgtactattaaattacttcttaattacttactttgatgaactatgtttcgataatcctttcagtttccactcaaaaattagaatatttaatctgctacgttcaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32846" stop="30205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32546" g_stop="32426" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32425" i_stop="32184" i_length="242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32157" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="148" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32156" i_stop="32043" i_length="114">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32042" g_stop="31920" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="271" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31919" i_stop="31835" i_length="85">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31834" g_stop="31594" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="512" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31593" i_stop="30692" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30691" g_stop="30506" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="698" r_length="186" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="714"/>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U325201" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32546" e_stop="32426"/>
          <exon e_start="32183" e_stop="32157"/>
          <exon e_start="32042" e_stop="31920"/>
          <exon e_start="31834" e_stop="31594"/>
          <exon e_start="30691" e_stop="30506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGCCACTCCTCTCTAGTACTACTGTTTCTTACTAGTTGAGTGTTCATTCAACAAAAAAATGGGTTCAGACAACAATGTTCTTGCTGTAATTGCCAAAAATATTGATGTTCTTGCTTTGTAAGCATTCTCAATTTTCACCTACATATATTTGTACTAATGATAATATAATATTAGAGTAGGTAAAAGTCGTGAATGGATTGGTGGTCTGCTTATATATAGTCGGCTAATCCTTTGGCTTTTGGGATTAAGTTAGGCTCAGATGGCATATCTTTACGTAACCACACATTTTTTTGCTCTTGCTATGTAATTTTATCAACTCATTTCACATGCTAAAGGTTCAACATTTTTTGTTCCTCCAGGCCTCTAATCTCTCTTGTTTATCCTCTGTAAGTTACTTGATCTCTATAGTAAAGTTAAGAATGTAACTTTTTTAATTTTTTTTTCTTTTAGGTAACTGATTTAAATACCTTTTTGTTACTGATGATTTCATAATTTGGCAGGTATACATCTATTAAGGCAATTGAAACAAAGTCTCGTGCAGATGATCGACAATGGCTAACGTATTGGGTTCTTTATTCTTTGATTACTCTCTTTGAACTTAGCTTTTCTAAGCTCATTGAATGGTAAGCTGATTCGAGTTTTACATCAAATCAATAAATAAATTTTAGAAAAATGAACTAGTGATGTTATTTGTTTTATACTTTTCAGGTTTCCAATATGGTCTTATGCAAAACTAGCTGCAATATGTTGGCTAGTTTTACCTTACTTCAATGGAGCATGTTATGTTTATGAGAATTTTATAAGACCATTTTATAGAAATCCACAAGTTAAAATATGGTATGTTCCTTTGAAGAAGGATATTTTTAGTAAGCCAGATGATGTTCTAACTGCTGCTGAAAAATATATTGAAGAACATGGACCACAAGCATTTGAAAGGCTTTTAGCCAAGGTAAATCTATATTTGGTGTTCCATATATGGTCAAATCTCTTTATAATGGTGTTGTTTTGTCAAGAATGTTTTATCGTTTTTAGAGATAACATGAAATTGATTTTAAAATGTTATTATAGAGAGGGTTGGATGTGTATACTTATCCCCTAGAAAGGGGTTGCTCACGTTACCAAAGTTTGAAACACCCTTTCTTAGAGGTCGATTCAGGATTTTAATTAAATGATCAACAGCAGTGTAGCATTGTTCTTAGCTTATGTTCGTATTCCTTGCCATGGATCTAGTATGGGACGTTGCAAGACAAAATCAGAGTTAATGTTTGAGTGAATTAGGAGACCGGAAAGAGGTTTTCTTTTTTCTACATATTGTGTTGGTTCGTTAAGAGATAATCTGTGATCTCTCGAATTAAAGTACTCAAAAACCCGAAATTACTTTTCTGCTTCTTTTTCCTATATACTAAAATAACTAGAAAGAAAAACTGCACTATTACAAATTAATAACTACGACTAAAAAAATAACTATTGTTGTAATTATTGAATGACCAAGGAGTGATAACAGCTTATTCTTCTTTTTATGACAATTGATCCTGATTTGGTATATGTATGCATTAAAAAAGTTGTTAGATATTCGAGTTGAAGAAAGTGATTGTGTTCGTGATTGATGTAAAAACTACATTCGTCGGGTTAATTTCTCATATGGTCATCTGACTAGTAGTTATTGTCTCAGAAAATCACGTTTTTCTATTGATTTCAATTTTCCTCAACAATGAAATTACGTGACTTGCTGAGATAGTAATTATTAGTTCGTGAACATTTGAGTAAAGCACATAAAAGTACTTTTGTGTTGGATGCTTATTTTTACATGCATTAATTTTGAGTTTAGTGGTAATGATTTTAATTTAGCAGGCTGATAGAGATGCAAGAACCAGGAGGAACAACTACATGACCTTTGATGATGATTATCGATATTAATTAATTTCTCTTTGTACTATTAAATTACTTCTTAATTACTTACTTTGATGAACTATGTTTCGATAATCCTTTCAGTTTCCACTCATAATTAAGAATATTTAATCTGCTACGTTCAAATTA</genome_strand>
        <mrna_strand>TAATAGCCACTCCTCTCTAGTACTACTGTTTCTTACTAGTTGAGTGTTCATTCAACAAAAAAATGGGTTCAGACAACAATGTTCTTGCTGTAATTGCCAAAAATATTGATGTTCTTGCTTT..................................................................................................................................................................................................................................................GCCTCTAATCTCTCTTGTTTATCCTCT..................................................................................................................GTATACATCTATTAAGGCAATTGAAACAAAGTCTCGTGCAGATGATCGACAATGGCTAACGTATTGGGTTCTTTATTCTTTGATTACTCTCTTTGAACTTAGCTTTTCTAAGCTCATTGAATG.....................................................................................GTTTCCAATATGGTCTTATGCAAAACTAGCTGCAATATGTTGGCTAGTTTTACCTTACTTCAATGGAGCATGTTATGTTTATGAGAATTTTATAAGACCATTTTATAGAAATCCACAAGTTAAAATATGGTATGTTCCTTTGAAGAAGGATATTTTTAGTAAGCCAGATGATGTTCTAACTGCTGCTGAAAAATATATTGAAGAACATGGACCACAAGCATTTGAAAGGCTTTTAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAGAGATGCAAGAACCAGGAGGAACAACTACATGACCTTTGATGATGATTATCGATATTAATTAATTTCTCTTTGTACTATTAAATTACTTCTTAATTACTTACTTTGATGAACTATGTTTCGATAATCCTTTCAGTTTCCACTCAAAAATTAGAATATTTAATCTGCTACGTTCAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338168" ref_strand="+" ref_description="SGN-U338168        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABA-responsive protein (HVA22c), identical to AtHVA22c (Arabidopsis thaliana) GI:4884936 | chr1:26223901-26225487 FORWARD | Aliases: T6C23.10, T6C23_10(evalue: 5e-49, score=191) genbank/nr: gi|53793732|gb|AAU93595.1| putative TB2/DP1, HVA22 family protein [Solanum demissum] (evalue: 5e-73, score=277)">
      <seq>tcaacaaaaaaatgggttcagacaacaatgttcttgctgtaattgccaaaaatattgatgttcttgctttgcctctaatctctcttgtttatcctctgtatacatctattaaggcaattgaaacaaagtctcgtgcagatgatcgacaatggctaacgtattggggtctttattctttgattactctctttgaacttagcttttctaagctcattgaatggtttccaatatgggcttatgcaaaactaactgcaatatgttggctaattttaccttacttcaatggagcatggtatgtttatgagaattttataagaacattttatagaaatccaccagttaaaatatggtatgttcctttgaagaaagagtatttttaataagccagaagatggtctaactggtggtgaaaaaatattgaagaacatggaccaccagcatttgaaaaggttttaacccagggtgatagagatgccagaaccaggaagaaccactacctgacctttgatgaagaatatccatattaattaatttctctttgtactaataaaatacctcctaattacttaccttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="-" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="32795" stop="30276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32495" g_stop="32426" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32425" i_stop="32184" i_length="242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32183" g_stop="32157" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="97" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32156" i_stop="32043" i_length="114">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32042" g_stop="31920" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="220" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31919" i_stop="31835" i_length="85">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31834" g_stop="31594" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="461" r_length="241" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31593" i_stop="30692" i_length="902">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30691" g_stop="30576" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="577" r_length="116" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="-" ref_id="SGN-U338168" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32495" e_stop="32426"/>
          <exon e_start="32183" e_stop="32157"/>
          <exon e_start="32042" e_stop="31920"/>
          <exon e_start="31834" e_stop="31594"/>
          <exon e_start="30691" e_stop="30576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAAAAAAATGGGTTCAGACAACAATGTTCTTGCTGTAATTGCCAAAAATATTGATGTTCTTGCTTTGTAAGCATTCTCAATTTTCACCTACATATATTTGTACTAATGATAATATAATATTAGAGTAGGTAAAAGTCGTGAATGGATTGGTGGTCTGCTTATATATAGTCGGCTAATCCTTTGGCTTTTGGGATTAAGTTAGGCTCAGATGGCATATCTTTACGTAACCACACATTTTTTTGCTCTTGCTATGTAATTTTATCAACTCATTTCACATGCTAAAGGTTCAACATTTTTTGTTCCTCCAGGCCTCTAATCTCTCTTGTTTATCCTCTGTAAGTTACTTGATCTCTATAGTAAAGTTAAGAATGTAACTTTTTTAATTTTTTTTTCTTTTAGGTAACTGATTTAAATACCTTTTTGTTACTGATGATTTCATAATTTGGCAGGTATACATCTATTAAGGCAATTGAAACAAAGTCTCGTGCAGATGATCGACAATGGCTAACGTATTGGGTTCTTTATTCTTTGATTACTCTCTTTGAACTTAGCTTTTCTAAGCTCATTGAATGGTAAGCTGATTCGAGTTTTACATCAAATCAATAAATAAATTTTAGAAAAATGAACTAGTGATGTTATTTGTTTTATACTTTTCAGGTTTCCAATATGGTCTTATGCAAAACTAGCTGCAATATGTTGGCTAGTTTTACCTTACTTCAATGGAGCATGTTATGTTTATGAGAATTTTATAAGACCATTTTATAGAAATCCACAAGTTAAAATATGGTATGTTCCTTTGAAGAAGGA-TATTTTTAGTAAGCCAGATGATGTTCTAACTGCTGCTGAAAAATATATTGAAGAACATGGACCACAAGCATTTGAAAGGCTTTTAGCCAAGGTAAATCTATATTTGGTGTTCCATATATGGTCAAATCTCTTTATAATGGTGTTGTTTTGTCAAGAATGTTTTATCGTTTTTAGAGATAACATGAAATTGATTTTAAAATGTTATTATAGAGAGGGTTGGATGTGTATACTTATCCCCTAGAAAGGGGTTGCTCACGTTACCAAAGTTTGAAACACCCTTTCTTAGAGGTCGATTCAGGATTTTAATTAAATGATCAACAGCAGTGTAGCATTGTTCTTAGCTTATGTTCGTATTCCTTGCCATGGATCTAGTATGGGACGTTGCAAGACAAAATCAGAGTTAATGTTTGAGTGAATTAGGAGACCGGAAAGAGGTTTTCTTTTTTCTACATATTGTGTTGGTTCGTTAAGAGATAATCTGTGATCTCTCGAATTAAAGTACTCAAAAACCCGAAATTACTTTTCTGCTTCTTTTTCCTATATACTAAAATAACTAGAAAGAAAAACTGCACTATTACAAATTAATAACTACGACTAAAAAAATAACTATTGTTGTAATTATTGAATGACCAAGGAGTGATAACAGCTTATTCTTCTTTTTATGACAATTGATCCTGATTTGGTATATGTATGCATTAAAAAAGTTGTTAGATATTCGAGTTGAAGAAAGTGATTGTGTTCGTGATTGATGTAAAAACTACATTCGTCGGGTTAATTTCTCATATGGTCATCTGACTAGTAGTTATTGTCTCAGAAAATCACGTTTTTCTATTGATTTCAATTTTCCTCAACAATGAAATTACGTGACTTGCTGAGATAGTAATTATTAGTTCGTGAACATTTGAGTAAAGCACATAAAAGTACTTTTGTGTTGGATGCTTATTTTTACATGCATTAATTTTGAGTTTAGTGGTAATGATTTTAATTTAGCAGGCTGATAGAGATGCAAGAACCAGGAGGAACAACTACATGACCTTTGATGATGATTATCGATATTAATTAATTTCTCTTTGTACTATTAAATTACTTCTTAATTACTTACTTTGATG</genome_strand>
        <mrna_strand>TCAACAAAAAAATGGGTTCAGACAACAATGTTCTTGCTGTAATTGCCAAAAATATTGATGTTCTTGCTTT..................................................................................................................................................................................................................................................GCCTCTAATCTCTCTTGTTTATCCTCT..................................................................................................................GTATACATCTATTAAGGCAATTGAAACAAAGTCTCGTGCAGATGATCGACAATGGCTAACGTATTGGGGTCTTTATTCTTTGATTACTCTCTTTGAACTTAGCTTTTCTAAGCTCATTGAATG.....................................................................................GTTTCCAATATGGGCTTATGCAAAACTAACTGCAATATGTTGGCTAATTTTACCTTACTTCAATGGAGCATGGTATGTTTATGAGAATTTTATAAGAACATTTTATAGAAATCCACCAGTTAAAATATGGTATGTTCCTTTGAAGAAAGAGTATTTTTAATAAGCCAGAAGATGGTCTAACTGGTGGTGAAAAA-ATATTGAAGAACATGGACCACCAGCATTTGAAAAGGTTTTAACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAGAGATGCCAGAACCAGGAAGAACCACTACCTGACCTTTGATGAAGAATATCCATATTAATTAATTTCTCTTTGTACTAATAAAATACCTCCTAATTACTTACCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334521" ref_strand="-" ref_description="SGN-U334521        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: EMB1075 | serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:16488760-16490824 REVERSE | Aliases: F2J6.7, F2J6_7, EMB1075, EMBRYO DEFECTIVE 1075(evalue: 2e-19, score=92.8) genbank/nr: aromatic(evalue: 1e-32, score=143)">
      <seq>aaggcattggacatcccaaaaacttgtgtccagaaattgtgacacttccaattggcttcttgaaactaatcatctgttcaaattgcacaaagaataattagaatgttgctctcaaaattactaaagatattgtaattagaagtaagaagtgaaactcacattgtttataaaaggggtcataagaccacatagtgctgcatcacagtgaatgtaaaatcgatcttgtgaatagccacattctttgagtatttcaagaataacatccaggtcatcgattgctcctttgaatgtagttcctataattgaaaaaaccatcaatggaaaagacttaagatgactgatttgatcacataaaagaaaaaatgaaaaatgataagaggttggagtataggtatataccaattgtgacatttataatagctggtttatccttattttgaagtaactttgctcttaaatctgaataatccatctctccatttactgatgtgttgattgtttctgaatccattctatacattcttgcagctttgaatactgagtaatgagagtcttttgatgcatataatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="+" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="33962" stop="43970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34262" g_stop="34389" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34390" i_stop="43248" i_length="8859">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43249" g_stop="43661" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="540" r_length="409" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="+" ref_id="SGN-U334521" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334521" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34262" e_stop="34389"/>
          <exon e_start="43249" e_stop="43661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCATTGGGCATCCTAAGAACTTGTGACCAGAAATTGTG--ACTTCCAATTGGATTCTTGAAACTAATCATCTGTTCAAAAT-TAAAAAGAATAATTAGATCGTCGCTTTGAGAATTACTAAAGATATTGTAACACTACTAAAAAAAGGCCAAAAAGAGACCTAGAAATGGAGACCTCAAAAATAGGTCAATAATAAGAGACCTCAAAAATAGGTCAATAGGTCGCTATTTAAATTAGAATCTTTTAATTTTTGTTTCAATGTAGGAGAGACCTCGTGAGGTCAATATAATGAATAATTTTTTTTTACCTTACTTATTTAAAATTTTAAATTTTTAATCTAATTCTCATAAAATTGGAGACCTCATGAGGTCTCTAATTTCTTAATTATTCAATTAAATTAAATTATTATTTTTAATTTAACAAGTAGAGACCTCATGAGGTCTATACTTGTTAAATTAAAAATAATAATTTAATTTAATTTAATTTTTTAAAAGTTAGAGACTTCATGAGGTCTCTTAAACAAAACCAAAAACCTAGCCAAAATTAAAATAGCTCTTTCTTACCTCTCTCTTAATTTTTTTGGTCGACCGCGCACCTCTCTCTCTCTTTCTCACTGACCTCGTCGACCGCCTCTCTCTTTCTCGTCGTCGATCGTCGACCGCCTCTCTCTTTCTCGTCGTCGACCGCCTCTCTCTTTCTCTCTCTCTGTCGACCCTCTCGCTCATCACTCTCTGTCGACCCTCTCGCTCATCGCTCTCTGTCGACCCTCTCGCTCATCGCCAGCTCTCCGCCGCCAGTTGCAGTCGCCTCAGCAGCAGCACCTCCATCTCCAGGTAAATTTATTTATTTTTGGTTATTGAAACTAAATGTGTTAGATCATTGAGATGTGAGGTGTTTGAGGTTCATTTGATTGTATTATTATATATTTATATCTCATTGTGATATTGTCACTTTGCACATATACTTATGTTGTTATGAATTTATAATATGTGATTTTTACTCTTTAACATCTCTTTTTTCATCAAACAAAAACAATATTGGGAACTTGTGAAGTGAAGATTGTTTTTTTTTTCAATTAATAAGAGTTGGGATGACTCATTTACTCTAAAATAAATAAAAATTTTGAGATGTCTAATCATATACATATAATAATAGTTAGATGTAGAATGATATACATATAATAGAGATGTGAACATGAATCAACAACAATTCCCCAATCCCTAACATTAATCTACATAATTATAAGTCATAATATACTACAAATGAGAACCAAATATCACAAAATTATTTGTTTAAGCATAAGTACCAACACTAGTTGATCCTATTGATAAATTCATTTTCTTTGAAAATCAATTTGTGTCCATCTAGTGTTGACACTTAGCTTTAAATTTAGAAATAATTATTTGTTAAGCTTAAGAACCAACAATAGTTGATCCTATTTATGACAAAATTGATTTTCTTTTGAAAATCAATTTGTGTCCATCTAGTGTTGACACTTAGCTTTAAATTTTAGAAATAATTATTTGTTAAGCATAAGTACCAACACTAGTTGATCCTATTGATGACAAAATTGATTTTCTTTTGAAAATCAATTTGTGTCCATCTAGTGTTGACACTTAACTTTAAATTTTAGAAATAATTATTTGTTAAGCATAAGTACTAACACTAGTTGATCCTATTGATGACAAAATTGATTTTTGAAAATCAATTTGTGTCCATCTAGTGTTGACACTTAGCTTTAAATTTTAGAAATAATTATTTGTTAAGCATAAGTACCAACACTAGTTGATCCCATTGATGACAAAATTGATTTTCTTTTGGAAATCAATTTGTGTCCCTCTAGTGTTGACACTTAGCTTTAAATTTTAGAAATAATTATTTGTTAAGTTTGTAACTATCGTGTTAGTATTAAGTTAAACTAAACTAATTAAACTTAGAAATTTGTTAAGTTAGTTAATAAGTTAAACTTGTTACTATAGTATTAGAATTTAGTTAAAACTAGACTAATTAGACTTAGAAATTTGTTAAGTTGGTTAATAAGTTAAATTTGTAACTATTGTGTTAGTGCTTGACAAATTTAATGTATGATTCTTATGTAGATGGATCGTAGTTGGATGTATAATATGACTAATTTTGGTCGAATGGGGCTAAGACCTGAATTTGTAGAAGGTGTCATTGGTTTTGTGGAGTATGCAAAGACATTAGATCCTTTTCAACGTAGTGGTATGATTAAGTGTCCTTGTAATAAATGTCAATGTTTGAATTATGAAAAACCAGATGCTGTTGAGCTTCATATATATCGAAATGGGATTAAAAAAGAATACACTGTGTCGACTAGTCATGGAGAATTGATAATAACTTTGATGTATTCCAACATTATGTTCCTGGTGAAAGTAGTAGCAATGTGAACTCTAATGCACAAAATTATAGAATTGATGACATGGTTCAAGATGCTTTTGGTGTCCATTCTAATTTTGATTTTGCTAATCAAGGTGAAGAAGCTCCTAATATTGAATGTAAAATTTTCTTTGAACAATTGGAATCTGCTAGTCGGCCTTTATATGAGGGGAGTCCACACTCAGAGTTGTCTATTGCGGTTAGATTATTAAGTATCAAATTAGATTGGAATGTTCCTCAAGGGGCAATGGACTCTGTGATTTACCTTATTCATGATTTAGTTGACCCAAATCTAGAGATACCTGATAATTTCTATAAGGCAAAGAGGTTGGTAGCAAAGTTAGGAATGTCATCGATGAGAATTCATTGTTGTGAAAATGGTTGCATGTTATACTATAAGGATGATATTGATCTAGAATCGTGTAAGTTTTGTGGAAAATGTCGTTATAAACAGACAGCTAGTGGGAAGAAAGTTCCTATTAAGGCAATGCATTACTTACCTATTATACCAAGGTTAAAGAGGTTGTATGCGTCTAATAGATCTGCTCCTCATATGAGATGGCACCATGAACATAGAAGACCACCTGGAGTTATGTGTCATCCATCTGATGGAGAGGCTTGGAAGCATTTTGATAGAATATATCCACAATTTGCAGCTAAACCACGTAACATTATATTGGGTTTATGTTCAGATGGATTCACGCCACATTCTGTTTCTGCTGCACCATATTCTTGTTGGCCTGTATTTGTAACACCATATAATCTTCCACCCGAGATATGTATGACCAGTCCATATATATTTCTCAATTGTGTCATTCCTGGCCCTCGGAATCCAAAAGTATTGATTGATGTATAGTTGCAACCTTTGATTGATGAGTTGAAAAAATTGTGGGTTCAAGGGGTTGAAACATTGGATGTGTCTTTTAAGCAGAATTTTAATTTGCGGGCCATTTTAATGTGGACTATTAATGATTTTCCAGCATATGGCATGTTGTCAGGGTGGATGACAGCGGCGAAATAAGCTTGTCCTTATTGTATGGAAAATACTAAATCATTCACTTTGAAACATGGTCGTAAAAATTCTTGGTTTGACTGTCATCAACAGTTCTTGCCAATGGATCATGAGTTTAGGAGTTTGAAAAATGCATTCAGAAAGAATTCTGTTGAACAAGGTTATCCTCCTCCAATCTTAACTGGAGAACAAGTTTGGGAGAGGGTTCAAAACTTTCCAAAGGTCACAAAAGAACAACCCTATAAATTTGATGGACATGGTGTTGCACATAACTGGACAAAACAAAGCATATTCTGGAAGTTACCGTATTGAAAGGACAATCTTCTTCGATATAATCTTGATGTCATGCATATTGAAAAAAATTACTTTGATAATTTATTTAACACAGTAATGGGTGTCACTGGCAAGACAAAAGATAGTGTTAAAGCTAGAATGGACTTACCTGAATATTGCAGGCGAAAAGAGCTATGGTTGCAAGAGAAACAGAACAACAAGTTCTTCAAGCCGATGGCTAGTTATTCATTTACAAGGGTTCAAAAGAGTAAAATTTGTGAATGGGTCGAGCAACTTAAGATGCCTGCTGGACATGCTTCAAATTTAGGATAATGTGTTGATATGGAGCATGGAAAATTACATTGTATGAAAAGTCATGATTGGCATGTCTTCATGGAAACATTACTCCCCGTTGCATTTAGTGGCTTGCCTGATAGAATTTGGAAACCTATGACTGAAATCAGTTTATTCTTCAAGGACTTGTGTTCTAATACGTTAAGGGAAGACAACCTAGTTCAGATGGATCAGAATATTCCTGTAATTACGAATAAGTTGGAGAATATTCTTCCACCTGGATTTTTCGATGTGATGGAGCATCTTCCTGTACATCCTTGGAGGTCTGGTTCAATATAGATGGATGTATCCTTTTGAGAGGTAAATATTTAACTATTAATATTTTTAAATTAATATGTTGTTTAAATCAATGATAACAATGTATAATGTAGGACTATTGGAAAGTGTAAACGGGGCATGAAACAAAATCATAGAGTTGAAGGCTCAATGGTTCAATTCCATCTTGGTAGGGAGATAACTAATTTTGGTTCTTATTACTTTAAAAGAAGTGTGTCATGCTTTCAAAATAGACCCAATTGCCATGACTATGGTGGTGAGACTATGAAGCCACTATCAATCTTCAATCGACCAGGCAAAGGTTCAAAAAACGCACAATGAGGAATCTTAGTGCCATTGAGTTGCTGTCTGCATCTACACATGTCTTATTGAATTGCCCACAAGTTAAACCATTTGTTGATTAAGTTTTTTTTCTTACTAAAATATGTAATTACAAGACAAAACTATTAACTTAATATCCATCTTCTTTGACAGTTACTTTGTGCATTTATATGGCAATGAAAGAGTATTTGAGAATTTCTCAAAGTGGTTTCAAGATTACGTAAGCCTTATAATATTTTCATAATACTATTATTATTAAATAAATTTATATTTAATTGATGCTAATTTCTTACTTTTTAAATATTTATAGATTTATGACACAAAAAATGGTCAATTTGACAAATTTTTGAAGGACATTTCTTGGGGACCCATCAAGACTTATTCAATGAATAAGTATGTTGTTAATGGTTTTAAATTTACTACTGAAGAATACTCCAAATATAAAAAAACTAACAATAGTGGTGTTTGGGTAAAAGGTGGTGATGGAAATCTAGATGGAGTTGATTATTATGGGGTACTCTAGGAGGTTTTGGAAATGGAGTATTCCGGTTGGCCTACAAAAAAAATTATATTATTTAGATGCAAGTGGTTTGATCCAACCCCCAAAAGAGGCATGAGAGAAATCAAACAATATAATATCATTGAAGTAAAGCACACAAGGGAATATGAAGCTTATGATCCTTTTATTATTGCACAAAATGTTAAGCAAGTGTACTATGTTCCTTATCCCTTGCGTCCAGATAAAGCTGATTGGTGGGTGGTTATTAAAACCAAACCCATGGGCGGTGTGGAAGTTGAAAACGTGTTGGATTTTGCATACCAAAATGATGATTTATCAATTGTTCACCACAATGTCGATATTGAATTAGAAAATGATTTAGAGCATCCTGAACACATATTAGAAGAGGTTGATATGGAAGAAATAACAAATGAAGGGGCAAATGCAACAATTCATGAGGATGAGTTTGAGTATGATGATGGGGATGAAGATGAATATGAGGAAGAGGACGAGGATGAGTATGAGGACGAGGATGAGGATGAGGACGAGGAGGATTAGTAATTACCATTGTATCTCCGTATTGAGTGCTTTATAGATTTATTAATGATACAGAGTGTAATTTATTAATCTATCCTTGTGTGCCTTTTTTTTTAATTTCAATAACTTCAACTTCATATGTTCTCGTGTTCCTTTTGTTGGATATTGTTTTTGATATTATTTTGTACTTTTGGTTGTGGCTTTATTTTATTTTAAAAACTGATGAACTGCTAGATAAGCTACTGGATGATGTTTGTCTCTCATATATTCAATATCTAACAACCTTTGACTTGAATGTTTCTGTTACCAATTAGATGACAAGTAAATGTAAGAATAAAGATATTGATAATGGCCCCAAAAAGAAAAAAAATAAAGAAGGTATGGTTAGTAGACAACAAACAGGTATAGATATAAGATCACACAACACAACATCTCTCCCACCAAAAGACACTCTGCCACATTGCTATTCTAGGCCGACCGTGCCTCCACGTATTAATCCTCCTTCGACCTATATGCATCCACCACTGGAATATACTCAGCCGCCCCCTCAGGTAGCTTTGATGATGACCACATCAGGGAATGCTACCCCACAGGGATACAGTGTTTTGCCTTTAGAGGATAATCGACCAACGTCTAGTGTCTCTCGCACTAATACTCACAACCCTGCAGACTCACAACCATCATCATCATCTGCTTCACAACTTATGATGTCGAGTCTTTGCATTCAACGTAATAGTTCTGAGCCTAACACTCCAACCACAAATCAGTCAGATACACCTGGTCATGACAATACACAAGTTGGCATGAGGGACATGCATAATAGACTTGTCATTGAGCCTGGAGGATACACGTAAGTTTTTTTTTTAAAAAATATGGTATGTTTATTATTATATGATTTAATTGTATTTGTTTTAACTTGTAAATGTTAAAACTTTGTATTACAGTTTCAATCCAGATGATGTTGTGGGGATCATTTCTCAGACAATCAAAGAACTCTATAGAGATGCTTATCCTACATGGGGCAAGTTCCCTAGCAATCTCAAGAGACAAATATTTTTGGAGTTCAGGGTATTTTCGAATTTATTTGTTTAACACTATTAAAATACTTGTCTTCATTAATACTTATTAAATAAAATAATTTATGCTTTGATTGTAGAAAAAATGTGCTTGGCGTTCGGAACATGAGGCCAAAATTTGTGCAAACTTTCACAAGAAAGCTACGCATACTCTTGCTAGTTTGTTTAATAAAGCTCGTAGAGATAATAGCAAACCTAGCTGGGTTCTACCGGATGATTGGGAAAAATTACTCGTGCATTGGAAATATGATCCAAAATTTAAGCAGATGAGTGAGATCGGTAAAAAGGCAAGATCATCTACTAAGGGTGGTTCTCTACACACAAGTGGTGCTCAAAGTCAAGGATGTGTGAGGAGGAAATTGGTGTGTATCATTTTTCTTTGTGTTTATATATTTTATTTATTAATATTTAATTACTCTTGATTATAACTTTATTATTTTATGTAGGAAAAGGAACTAGGAAGACCGATAACTCAAGCTGAGGCATTTAAGGCAACACACATTAGAAAGAAGAAAAATCCTGAAGATCCAGACGTGTGGGTTGAACCGCAAGCTGAAGTGACCTATGTAAGCCTCTAATTTTAAAAAATAATTACTTATTTTCTAAATTTATATTCTCATATGATAACATTCAATTTATAATCGATATCTTCAAGCTTTGGAGGATTTACAACAATCTCTGCCGGAAGAAAATCGAGGTATGCCACTTACTCAAGAACAGGATGAGAGAGTTTGGTTAGACTTGACTTGTGGGCCGAGTAGATATGGGTATGCATATGGAATGCTGCATAAAACCTTTCGTGAATTTTCTTCTGAGTTTGAAGGCCTAAATAGTTCAAATAATGATGAATCAATGAAGAAAAATTTGGCTATGGAGAAAAAGATTGTTGAGCTATCTTGCCAAGCCGAAGAATCACGGGCTAGGGAAAGGTGGTTGGAATTACAGTTTGCGGGTCTTAAAGCTCAATTCGATGCATTACTTGCCTCAGGAGGGATTCCCCCTTGTTCTGGTGATGTCGCTTTCCCTCCTCGACCTCCTCAATCTCAACCTACTCAATATTCAATGTATGGTCAACAAAGAAATATGACCCATGAGATTAGTAGTGATGAAGAAAGTGATGATTATGTGGCAAACACACTACCACATTAGTGAAGTTTAGACTTGTGATAGTTAACTTATGGATCATTTTGTTAACTTTATAATTTTGTGATGGGAATTATTTGTTTTGTGAATACATGATAACGTTGGAATATATTATATAACTTATGGATATCATGGTTTTTGTTTAATATATAATTATGTTGAAGTGAGTAGCAATTGAGTTGATAAGAGAATATTTAGTAAATGTATTGCTTCAATTGAGTTTTTGAAGCTCTTTGAGTTTGATTTGGGTACTGAATTAAAATGACAGGTGATGCGAAGTTGCAGAAACAATAATTTTCTGCCAGTTTTTTTCCAGTAAAAGAGACCTAATGAGGTCTCTTTTTTGCATTAATTTTCCAGATATTTCATAATAAAGACCTCATGAGGTCTCTTTTTTGCATTAATTTTCCAGATATTTCATAATAGAGACCTCATAAAGTCTCTTTTTTGCATTAATTTTTTCAGATATTTCATAATAGAGACCTCATGAGGTCTCTATTTACCATTTTCTATTTTATAAATGTAGAAAAGAGACCTTATGAGGTCTCCCTTTTGTATTAATTTTTTCAGCTAGTTCATAATAGAGACCTCATCAGGTCTCTAATAAACATTTTATATTTTATAAATGCAGAAAAGAGACCTCATGAGGTCTCTTTTCTTCATTATATTTTCTGTAAATTTCATTATGGAGACTTCACGAGGTCTCCAAAAATAAATGCAGAACAGAGACCTCATGAGGTCTCTACTTTAAAATAATATAAAATTAAATTAAATAATATCTTAGCGACCTAATGAGGTCTCTTTATTAAAATATAAAATTAAATAATATAATAAAATTGTGACCTCATGAGGTTTCTATATAAAAAATATAAAATTAAATTAAATAATACAATAGTGACCTCATGAGGTCTCTTTTTTGTTAAAAAACAGATAATTTGTTGGGTGAGGTCTCCGTTTGGCAACCTCATGAGGTGTCTGTAAAAAAGTGACCTGCATTTTACTGACCTAGCGTTGAGGTCTCTTTTTCGGTCTTTTTTTCCCGAAAAGAGACCTCATGTGGTCTCTTTTCTAGGTCTCTTTTTGGCCTTTTTTTAGTAGTGTAATTAGAAGTAAGAAGCAATTGAAACTCACATTGTTTACAAAAGGGGTCATAAGACCACATAGTGCTGCATCACAGTGGATGTAAAATCGATCATGTGAATAGCCACATTCTTTGAGTGTTTCAAGAATAACATCAACATCATCAATAGCTCCTTTGAACGTAGTTCCTATAGTTAAAAGAACCATCATTGGAAAAGACTTAAGATGACTGATTTGATCACATAAAAGAAAAAATGAAAAATGATAAGAGGTTGGAGTATACGTATATACCAATTGTGACATTTATAATAGCTGGTTTGTCCTTATTTTGAAGTAACTTTGCTCTTAAATCTGAATAGTCCATCTCTCCATTTACTGATGTATTGATTGTTTCTGAATCCATTCTATACATTCTTGCAGCTTTGAATACTG</genome_strand>
        <mrna_strand>AAGGCATTGGACATCCCAAAAACTTGTGTCCAGAAATTGTGACACTTCCAATTGGCTTCTTGAAACTAATCATCTGTTCAAATTGCACAAAGAATAATTAGAATGTTGCTCTCAAAATTACTAAAGATATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTAGAAGTAAGAAG----TGAAACTCACATTGTTTATAAAAGGGGTCATAAGACCACATAGTGCTGCATCACAGTGAATGTAAAATCGATCTTGTGAATAGCCACATTCTTTGAGTATTTCAAGAATAACATCCAGGTCATCGATTGCTCCTTTGAATGTAGTTCCTATAATTGAAAAAACCATCAATGGAAAAGACTTAAGATGACTGATTTGATCACATAAAAGAAAAAATGAAAAATGATAAGAGGTTGGAGTATAGGTATATACCAATTGTGACATTTATAATAGCTGGTTTATCCTTATTTTGAAGTAACTTTGCTCTTAAATCTGAATAATCCATCTCTCCATTTACTGATGTGTTGATTGTTTCTGAATCCATTCTATACATTCTTGCAGCTTTGAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332947" ref_strand="+" ref_description="SGN-U332947        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G23880.1 | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr3:8621999-8623169 REVERSE | Aliases: F14O13.6 (evalue: 1e-21, score=100) genbank/nr: gi|47824919|gb|AAT38695.1| putative F-box protein [Solanum demissum] (evalue: 1e-126, score=455)">
      <seq>cataacagagattctcttaaagcttcctgtcaaatctctgtcgaaattcatgtgcgtttctaaatcatggcttcaactaatctctagccctgatttcgtgaaaaaccatatcaagttaactgctaatgacaaacgatacatccatcacaggcttatatttcgaaaaaccaatgatgatttcaagttttgtcctctccttcccttatttaccaaacaacaactcattgaggagctattccacatcaaaagatcctctttatcaactcacattgtcggctccgtcaatgggttgatttgtgttgtccatggcaaaaaagaggcatatatatggaaccccactattaccaaatcaaaggaattacccaagtttacatgtaatttgtgctctggttatatcagatatggtttcggatatgatgagtcacgtgatgattataaagtcgtatttatcaattatccttataatcattctagtagttccgatatgacgactgtggtcaacatatgtagtttaaggactaattcttggacaacactccatgatcagcttcagggcatctttctattaaatcaatatggtagatttgtcaatgggaagctttattggacttcatcgactcgtaataatcactacaaggtgtgcaacatcacttcctttgatttagcagacgggacgtggggaagcttggagcttcccagttgtggaaaagacgattttgatatcaatttgggagttgtgggaagtgatctttctctgctttatacttgtcgacgaggtgctgctacctctgatgaagtggaagctaatgttgaacactaatcaatagttgctgctgagttcatggatcgaaatgatgaagccttgtgattatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0066O01-9Z0O9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLe0066O01.2" temp_strand="+" temp_description="C05SLe0066O01.2  AC212306.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0066O01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70064" stop="72268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70364" g_stop="71156" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71157" i_stop="71886" i_length="730">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71887" g_stop="71968" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="875" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0066O01.2" gen_strand="+" ref_id="SGN-U332947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0066O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70364" e_stop="71156"/>
          <exon e_start="71887" e_stop="71968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACAGAGATTCTCTTAAAGCTTCCTGTCAAATCTCTGTCGAAATTCATGTGCGTTTCTAAATCATGGCTTCAACTAATCTCTAGCCCTGATTTCGTGAAAAACCATATCAAGTTAACTGCTAATGACAAACGATACATCCATCACAGGCTTATATTTCGAAAAACCAATGATGATTTCAAGTTTTGTCCTCTCCTTCCCTTATTTACCAAACAACAACTCATTGAGGAGCTATTCCACATCAAAAGATCCTCTTTATCAACTCACATTGTCGGCTCCGTCAATGGGTTGATTTGTGTTGTCCATGGCAAAAAAGAGGCATATATATGGAACCCCACTATTACCAAATCAAAGGAATTACCCAAGTTTACATGTAATTTGTGCTCTGGTTATATCAGATATGGTTTCGGATATGATGAGTCACGTGATGATTATAAAGTCGTATTTATCAATTATCCTTATAATCATTCTAGTAGTTCCGATATGACGACTGTGGTCAACATATGTAGTTTAAGGACTAATTCTTGGACAACACTCCATGATCAGCTTCAGGGCATCTTTCTATTAAATCAATATGGTAGATTTGTCAATGGGAAGCTTTATTGGACTTCATCGACTCGTAATAATCACTACAAGGTGTGCAACATCACTTCCTTTGATTTAGCAGACGGGACGTGGGGAAGCTTGGAGCTTCCCAGTTGTGGAAAAGACGATTTTGATATCAATTTGGGAGTTGTGGGAAGTGATCTTTCTCTGCTTTATACTTGTCGACGAGGTGCTGCTACCTCTGATGTATGGATTATGAAGCATTCTCGAGTTAATGTATCTTGGACAAAATTGTTCACCATCAAATATCATCAAAATATTAAGACACATAGGTGTTTTGCACCTGTTTTCACATTCTCTATACATTTTCGCCACGGTGAAATTTTGCTTCTTCTTCACTCAGCAATCATAATATATGATGGTTCAACAAGACAACTAAAGCACACTTCTGATGTTACGCAATGTGAAGAAATCTATGTAGAAAGCCTCGTTAATCCCCTAACAATATCTGACCAGGGTCGTCGTAACCAGGAATCTCCACAATCATCCTGATAATTTGCAAGGATTCTGCTTAATGAAGCTTGTTATAATCTTTTATTTGCTGCCAAAGATAGGACAAGACATTGAACATATATTTTTCCTCATATCGGAACTTAATTACCGTGTCATAAGGGTAGGACCGGTGATTAGAAGTAGACGGAATAGAAAAAAACATTTGAATTGTTGAGTAATAGATGCAATAATCAGTATTCTGAAGTTTCAACATAGTGCTCGTTAGATCTCAATTAAGGAGTTTAGCTAATGAGAACTGTTTGATTAAAACAATTTTTTACATCGAGAAATGATGATTCTTTCACATTTATGTTGTTGCTTTTGTTTAAACTGTATGGCTATTTTGTTACTCTATAAACAGAGTCATTGTGAAAATTTTGTCAGGCACAACCTTAACTATTTGTTTTGAACTATTGAATTTCAGGAAGTGGAAGCTAATGTTGAACACTAATCAATAGTTGCTGCTGAGTTCATGGATCGAAATGATGAAGCCTTGTGATTATCTG</genome_strand>
        <mrna_strand>CATAACAGAGATTCTCTTAAAGCTTCCTGTCAAATCTCTGTCGAAATTCATGTGCGTTTCTAAATCATGGCTTCAACTAATCTCTAGCCCTGATTTCGTGAAAAACCATATCAAGTTAACTGCTAATGACAAACGATACATCCATCACAGGCTTATATTTCGAAAAACCAATGATGATTTCAAGTTTTGTCCTCTCCTTCCCTTATTTACCAAACAACAACTCATTGAGGAGCTATTCCACATCAAAAGATCCTCTTTATCAACTCACATTGTCGGCTCCGTCAATGGGTTGATTTGTGTTGTCCATGGCAAAAAAGAGGCATATATATGGAACCCCACTATTACCAAATCAAAGGAATTACCCAAGTTTACATGTAATTTGTGCTCTGGTTATATCAGATATGGTTTCGGATATGATGAGTCACGTGATGATTATAAAGTCGTATTTATCAATTATCCTTATAATCATTCTAGTAGTTCCGATATGACGACTGTGGTCAACATATGTAGTTTAAGGACTAATTCTTGGACAACACTCCATGATCAGCTTCAGGGCATCTTTCTATTAAATCAATATGGTAGATTTGTCAATGGGAAGCTTTATTGGACTTCATCGACTCGTAATAATCACTACAAGGTGTGCAACATCACTTCCTTTGATTTAGCAGACGGGACGTGGGGAAGCTTGGAGCTTCCCAGTTGTGGAAAAGACGATTTTGATATCAATTTGGGAGTTGTGGGAAGTGATCTTTCTCTGCTTTATACTTGTCGACGAGGTGCTGCTACCTCTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAAGCTAATGTTGAACACTAATCAATAGTTGCTGCTGAGTTCATGGATCGAAATGATGAAGCCTTGTGATTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6613" PGL_stop="3179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6553" e_stop="6465"/>
            <exon e_start="6368" e_stop="6243"/>
            <exon e_start="4939" e_stop="4512"/>
            <exon e_start="4062" e_stop="3979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6553" e_stop="6465" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.954">
            <gDNA_intron_boundary i_start="6464" i_stop="6369" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6368" e_stop="6243" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6242" i_stop="4940" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4939" e_stop="4512" e_length="428"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="4511" i_stop="4063" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="4062" e_stop="3979" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6553" stop="6465"/>
              <exon start="6368" stop="6243"/>
              <exon start="4939" stop="4512"/>
              <exon start="4062" stop="3979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6548" stop="6465"/>
              <exon start="6368" stop="6243"/>
              <exon start="4939" stop="4512"/>
              <exon start="4062" stop="3992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAACAAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCG : CAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATG : GACGGGTAGGTCAGTTAGTCAGGTCAAGCTCTGGTTGTATCCATGTTAAAATGATGGGTGGATAGTTGAATAAAAATTCTGCTCGTTGGATTTTTTTCAGATTTCTAAACACAAAAGGCACTGTAATACTCTTTTTTTCCCACTTGTCTGTTTTGCAGTCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAAGTATGGTTTAATGATTTCTTAATGATTTCTCTCTTTCAACTTGATTTTTCTTGTCCATAATTTATTTATCGTACAATGAAGTTGTTCTAAATTTCTACAGGGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAG : ATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGTTTCTTTGAAGCCTGGTACACCAATTGAAG</gDNA_template>
            <first_frame> A  T  N  S  Q  S  T  K  S  K  R  R  L  Q  P  S  P  A  P  E  F  R  L  N  *  E  H  N  G  R :   K  *  G  R  W  *  R  Q  S  *  H  R  R  C  C  H  R  T  L  L  I  W  P  L  K  Q  S  A  C  S  I  V  V  R  I  G  S  I  W  T  S  W :   T  G  R  S  V  S  Q  V  K  L  W  L  Y  P  C  *  N  D  G  W  I  V  E  *  K  F  C  S  L  D  F  F  Q  I  S  K  H  K  R  H  C  N  T  L  F  F  P  L  V  C  F  A  V  T  L  S  Q  T  L  P  S  V  L  Q  L  S  R  V  *  E  S  I  Q  S  M  V  *  *  F  L  N  D  F  S  L  S  T  *  F  F  L  S  I  I  Y  L  S  Y  N  E  V  V  L  N  F  Y  R  A  Y  L  D  C  H  L  M  V  T  N  P  L  D  Y  V  E  P  L  G  K  A  G  A  S  G  F  T  F  H  I  E  A  S  R   : D  N  W  Q  E  L  V  Q  R  I  K  S  K  G  M  K  P  G  V  S  L  K  P  G  T  P  I  E  </first_frame>
            <second_frame>  Q  Q  I  L  S  R  R  K  V  K  D  D  Y  N  L  R  R  R  R  N  L  D  *  T  E  N  I  T  A   : A  S  E  E  D  G  E  G  N  H  S  T  V  D  A  V  I  G  L  C  *  F  G  L  *  S  R  A  H  A  Q  L  W  C  G  L  A  P  Y  G  H  H   : G  R  V  G  Q  L  V  R  S  S  S  G  C  I  H  V  K  M  M  G  G  *  L  N  K  N  S  A  R  W  I  F  F  R  F  L  N  T  K  G  T  V  I  L  F  F  S  H  L  S  V  L  Q  S  L  C  P  K  P  Y  P  R  C  S  N  Y  R  E  S  E  K  A  Y  K  V  W  F  N  D  F  L  M  I  S  L  F  Q  L  D  F  S  C  P  *  F  I  Y  R  T  M  K  L  F  *  I  S  T  G  H  I  W  T  A  T  *  W  S  P  T  P  L  I  M  W  N  R  L  A  K  L  V  P  Q  A  L  R  S  I  L  R  H  L  E  :  I  I  G  K  S  L  F  N  G  *  S  L  R  A  *  N  L  G  F  L  *  S  L  V  H  Q  L  K </second_frame>
            <third_frame>   N  K  F  S  V  D  E  K  *  K  T  T  T  T  F  A  G  A  G  I  *  I  E  L  R  T  *  R  P  :  Q  V  R  K  M  V  K  A  I  I  A  P  S  M  L  S  S  D  F  A  N  L  A  S  E  A  E  R  M  L  N  C  G  A  D  W  L  H  M  D  I  M  :  D  G  *  V  S  *  S  G  Q  A  L  V  V  S  M  L  K  *  W  V  D  S  *  I  K  I  L  L  V  G  F  F  S  D  F  *  T  Q  K  A  L  *  Y  S  F  F  P  T  C  L  F  C  S  H  F  V  P  N  L  T  L  G  A  P  I  I  E  S  L  R  K  H  T  K  Y  G  L  M  I  S  *  *  F  L  S  F  N  L  I  F  L  V  H  N  L  F  I  V  Q  *  S  C  S  K  F  L  Q  G  I  S  G  L  P  P  N  G  H  Q  P  P  *  L  C  G  T  A  W  Q  S  W  C  L  R  L  Y  V  P  Y  *  G  I  *  R :   *  L  A  R  A  C  S  T  D  K  V  *  G  H  E  T  W  G  F  F  E  A  W  Y  T  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4674" stop="4512"/>
                    <exon start="4062" stop="3980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLSIIYLSYNEVVLNFYRAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIEASRDNWQELVQRIKSKGMKPGVSLKPGTPIE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4874" stop="4659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNKNSARWIFFRFLNTKGTVILFFSHLSVLQSLCPKPYPRCSNYRESEKAYKVWFNDFLMISLFQLDFSCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6182" e_stop="5530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="6182" e_stop="5530" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6182" stop="5530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTGTTTCATTGAAGTTAAAAAGAAAGATGTTAGTTTTTAGCAGAAAACTGTAGCTGCTTGAAGTTAGAAAGAAATATGTTAATGTTCGCTACAGAAAATTGTAGCGGCTTGTGAGCTCTTGTTTTTACCATCTTTTGGTTGAAATTTAAGGAACAGATCTTTAAAGTTTTAATGCAAGTTGTTATTAGCATTGCGTGAATAGAGTGACGCAAATTAGCAATACAGAGGATTCATGGAGCTCTGCATTGTAATACGAGAGTGATGCGTAGTTGATTGGTTGGTAGTTTTTTGTTTTTCTGAGAATTGTGGTGTATGGGCCAGCTTTCGCATATCTCGATTAATTTTCTGCGACGTACCTATCACCTCCCACCAGCAACAGGTACCGGGTGATTTTGTCCACCAAGGCTAGGATGGATAGGATAGTGTGTTGTTATTAGCTAGGTCTTTAAAGGCAATTGTTATGCAGAACAATGTAATCTCCTATGTAGTTGAGTATCATGAAAACAAAGTGGAAACATTGTATTGAGAAGCTGATGTGAAGAATTTGCCAAACTATTGAATTCTTGCATTACTTTCCCCTTCAGTTTTCAACAAGTAATAGGCAAACTATAAGCTATGTGACATATTTGGAGTGTCTAATGAAGACTGA</gDNA_template>
            <first_frame> S  I  V  S  L  K  L  K  R  K  M  L  V  F  S  R  K  L  *  L  L  E  V  R  K  K  Y  V  N  V  R  Y  R  K  L  *  R  L  V  S  S  C  F  Y  H  L  L  V  E  I  *  G  T  D  L  *  S  F  N  A  S  C  Y  *  H  C  V  N  R  V  T  Q  I  S  N  T  E  D  S  W  S  S  A  L  *  Y  E  S  D  A  *  L  I  G  W  *  F  F  V  F  L  R  I  V  V  Y  G  P  A  F  A  Y  L  D  *  F  S  A  T  Y  L  S  P  P  T  S  N  R  Y  R  V  I  L  S  T  K  A  R  M  D  R  I  V  C  C  Y  *  L  G  L  *  R  Q  L  L  C  R  T  M  *  S  P  M  *  L  S  I  M  K  T  K  W  K  H  C  I  E  K  L  M  *  R  I  C  Q  T  I  E  F  L  H  Y  F  P  L  Q  F  S  T  S  N  R  Q  T  I  S  Y  V  T  Y  L  E  C  L  M  K  T   </first_frame>
            <second_frame>  Q  L  F  H  *  S  *  K  E  R  C  *  F  L  A  E  N  C  S  C  L  K  L  E  R  N  M  L  M  F  A  T  E  N  C  S  G  L  *  A  L  V  F  T  I  F  W  L  K  F  K  E  Q  I  F  K  V  L  M  Q  V  V  I  S  I  A  *  I  E  *  R  K  L  A  I  Q  R  I  H  G  A  L  H  C  N  T  R  V  M  R  S  *  L  V  G  S  F  L  F  F  *  E  L  W  C  M  G  Q  L  S  H  I  S  I  N  F  L  R  R  T  Y  H  L  P  P  A  T  G  T  G  *  F  C  P  P  R  L  G  W  I  G  *  C  V  V  I  S  *  V  F  K  G  N  C  Y  A  E  Q  C  N  L  L  C  S  *  V  S  *  K  Q  S  G  N  I  V  L  R  S  *  C  E  E  F  A  K  L  L  N  S  C  I  T  F  P  F  S  F  Q  Q  V  I  G  K  L  *  A  M  *  H  I  W  S  V  *  *  R  L  </second_frame>
            <third_frame>   N  C  F  I  E  V  K  K  K  D  V  S  F  *  Q  K  T  V  A  A  *  S  *  K  E  I  C  *  C  S  L  Q  K  I  V  A  A  C  E  L  L  F  L  P  S  F  G  *  N  L  R  N  R  S  L  K  F  *  C  K  L  L  L  A  L  R  E  *  S  D  A  N  *  Q  Y  R  G  F  M  E  L  C  I  V  I  R  E  *  C  V  V  D  W  L  V  V  F  C  F  S  E  N  C  G  V  W  A  S  F  R  I  S  R  L  I  F  C  D  V  P  I  T  S  H  Q  Q  Q  V  P  G  D  F  V  H  Q  G  *  D  G  *  D  S  V  L  L  L  A  R  S  L  K  A  I  V  M  Q  N  N  V  I  S  Y  V  V  E  Y  H  E  N  K  V  E  T  L  Y  *  E  A  D  V  K  N  L  P  N  Y  *  I  L  A  L  L  S  P  S  V  F  N  K  *  *  A  N  Y  K  L  C  D  I  F  G  V  S  N  E  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0066O01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6613" e_stop="6465"/>
            <exon e_start="6368" e_stop="6243"/>
            <exon e_start="4939" e_stop="4935"/>
            <exon e_start="4781" e_stop="4719"/>
            <exon e_start="4618" e_stop="4512"/>
            <exon e_start="4062" e_stop="3965"/>
            <exon e_start="3791" e_stop="3699"/>
            <exon e_start="3610" e_stop="3569"/>
            <exon e_start="3410" e_stop="3179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.954" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="6613" e_stop="6465" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.954">
            <gDNA_intron_boundary i_start="6464" i_stop="6369" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6368" e_stop="6243" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6242" i_stop="4940" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4939" e_stop="4935" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4934" i_stop="4782" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4719" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4718" i_stop="4619" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4618" e_stop="4512" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="4511" i_stop="4063" i_length="449"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4062" e_stop="3965" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3964" i_stop="3792" i_length="173"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3791" e_stop="3699" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.858" acc_prob="0.944">
            <gDNA_intron_boundary i_start="3698" i_stop="3611" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3610" e_stop="3569" e_length="42"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3568" i_stop="3411" i_length="158"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3410" e_stop="3179" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6613" stop="6465"/>
              <exon start="6368" stop="6243"/>
              <exon start="4939" stop="4935"/>
              <exon start="4781" stop="4719"/>
              <exon start="4618" stop="4512"/>
              <exon start="4062" stop="3965"/>
              <exon start="3791" stop="3699"/>
              <exon start="3610" stop="3569"/>
              <exon start="3410" stop="3179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGGCTGAAAGTTAAATGGTAGTAGGTAGAAGGGTAACCGTAATAGTATATGTTTAGTGCAACAAATTCTCAGTCGACGAAAAGTAAAAGACGACTACAACCTTCGCCGGCGCCGGAATTTAGATTGAACTGAGAACATAACGGCCG : CAAGTGAGGAAGATGGTGAAGGCAATCATAGCACCGTCGATGCTGTCATCGGACTTTGCTAATTTGGCCTCTGAAGCAGAGCGCATGCTCAATTGTGGTGCGGATTGGCTCCATATGGACATCATG : GACGG : TCACTTTGTCCCAAACCTTACCCTCGGTGCTCCAATTATCGAGAGTCTGAGAAAGCATACAAA : GGCATATCTGGACTGCCACCTAATGGTCACCAACCCCCTTGATTATGTGGAACCGCTTGGCAAAGCTGGTGCCTCAGGCTTTACGTTCCATATTGAGGCATCTAGAG : ATAATTGGCAAGAGCTTGTTCAACGGATAAAGTCTAAGGGCATGAAACCTGGGGTTTCTTTGAAGCCTGGTACACCAATTGAAGAAGTGTACCCACTG : CTTGATGGTGAAAACGCTATCGAACTGGTCCTTGTTATGACTGTTGAGCCTGGTTTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAG : GTACACACTCTCAGAAAAAAGTATCCATCACTTGATATAGAG : GTGGATGGTGGTCTAGGACCTTCAACCATTGAGGCAGCAACATCAGCTGGAGCAAACTGCATAGTTGCAGGAAGTTCAGTATTTGGAGCTCCAGATCCAGCACAAGTCATAACTTTGCTGCGAGGCAGTGTGGAGGAAGCTCAGAAAAGGAGTTGATTCCAGAAGAGGCAAGATCTCGTGTTGTATTTTAACAACTATTACCTTATTTATAATTTCCGCGGAATCAATATCT</gDNA_template>
            <first_frame> W  W  L  K  V  K  W  *  *  V  E  G  *  P  *  *  Y  M  F  S  A  T  N  S  Q  S  T  K  S  K  R  R  L  Q  P  S  P  A  P  E  F  R  L  N  *  E  H  N  G  R :   K  *  G  R  W  *  R  Q  S  *  H  R  R  C  C  H  R  T  L  L  I  W  P  L  K  Q  S  A  C  S  I  V  V  R  I  G  S  I  W  T  S  W :   T   : V  T  L  S  Q  T  L  P  S  V  L  Q  L  S  R  V  *  E  S  I  Q   : R  H  I  W  T  A  T  *  W  S  P  T  P  L  I  M  W  N  R  L  A  K  L  V  P  Q  A  L  R  S  I  L  R  H  L  E  :  I  I  G  K  S  L  F  N  G  *  S  L  R  A  *  N  L  G  F  L  *  S  L  V  H  Q  L  K  K  C  T  H  C :   L  M  V  K  T  L  S  N  W  S  L  L  *  L  L  S  L  V  L  V  D  K  S  L  C  Q  R  *  W  I  R :   Y  T  L  S  E  K  S  I  H  H  L  I  *  R :   W  M  V  V  *  D  L  Q  P  L  R  Q  Q  H  Q  L  E  Q  T  A  *  L  Q  E  V  Q  Y  L  E  L  Q  I  Q  H  K  S  *  L  C  C  E  A  V  W  R  K  L  R  K  G  V  D  S  R  R  G  K  I  S  C  C  I  L  T  T  I  T  L  F  I  I  S  A  E  S  I  S </first_frame>
            <second_frame>  G  G  *  K  L  N  G  S  R  *  K  G  N  R  N  S  I  C  L  V  Q  Q  I  L  S  R  R  K  V  K  D  D  Y  N  L  R  R  R  R  N  L  D  *  T  E  N  I  T  A   : A  S  E  E  D  G  E  G  N  H  S  T  V  D  A  V  I  G  L  C  *  F  G  L  *  S  R  A  H  A  Q  L  W  C  G  L  A  P  Y  G  H  H   : G  R  :  S  L  C  P  K  P  Y  P  R  C  S  N  Y  R  E  S  E  K  A  Y  K  :  G  I  S  G  L  P  P  N  G  H  Q  P  P  *  L  C  G  T  A  W  Q  S  W  C  L  R  L  Y  V  P  Y  *  G  I  *  R :   *  L  A  R  A  C  S  T  D  K  V  *  G  H  E  T  W  G  F  F  E  A  W  Y  T  N  *  R  S  V  P  T   : A  *  W  *  K  R  Y  R  T  G  P  C  Y  D  C  *  A  W  F  W  W  T  K  V  Y  A  R  D  D  G  *   : G  T  H  S  Q  K  K  V  S  I  T  *  Y  R   : G  G  W  W  S  R  T  F  N  H  *  G  S  N  I  S  W  S  K  L  H  S  C  R  K  F  S  I  W  S  S  R  S  S  T  S  H  N  F  A  A  R  Q  C  G  G  S  S  E  K  E  L  I  P  E  E  A  R  S  R  V  V  F  *  Q  L  L  P  Y  L  *  F  P  R  N  Q  Y   </second_frame>
            <third_frame>   V  A  E  S  *  M  V  V  G  R  R  V  T  V  I  V  Y  V  *  C  N  K  F  S  V  D  E  K  *  K  T  T  T  T  F  A  G  A  G  I  *  I  E  L  R  T  *  R  P  :  Q  V  R  K  M  V  K  A  I  I  A  P  S  M  L  S  S  D  F  A  N  L  A  S  E  A  E  R  M  L  N  C  G  A  D  W  L  H  M  D  I  M  :  D  G :   H  F  V  P  N  L  T  L  G  A  P  I  I  E  S  L  R  K  H  T  K :   A  Y  L  D  C  H  L  M  V  T  N  P  L  D  Y  V  E  P  L  G  K  A  G  A  S  G  F  T  F  H  I  E  A  S  R   : D  N  W  Q  E  L  V  Q  R  I  K  S  K  G  M  K  P  G  V  S  L  K  P  G  T  P  I  E  E  V  Y  P  L  :  L  D  G  E  N  A  I  E  L  V  L  V  M  T  V  E  P  G  F  G  G  Q  K  F  M  P  E  M  M  D  K  :  V  H  T  L  R  K  K  Y  P  S  L  D  I  E  :  V  D  G  G  L  G  P  S  T  I  E  A  A  T  S  A  G  A  N  C  I  V  A  G  S  S  V  F  G  A  P  D  P  A  Q  V  I  T  L  L  R  G  S  V  E  E  A  Q  K  R  S  *  F  Q  K  R  Q  D  L  V  L  Y  F  N  N  Y  Y  L  I  Y  N  F  R  G  I  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6470" stop="6465"/>
                    <exon start="6368" stop="6243"/>
                    <exon start="4939" stop="4935"/>
                    <exon start="4781" stop="4719"/>
                    <exon start="4618" stop="4512"/>
                    <exon start="4062" stop="3965"/>
                    <exon start="3791" stop="3699"/>
                    <exon start="3610" stop="3569"/>
                    <exon start="3410" stop="3255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQVRKMVKAIIAPSMLSSDFANLASEAERMLNCGADWLHMDIMDGHFVPNLTLGAPIIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIEASRDNWQELVQRIKSKGMKPGVSLKPGTPIEEVYPLLDGENAIELVLVMTVEPGFGGQKFMPEMMDKVHTLRKKYPSLDIEVDGGLGPSTIEAATSAGANCIVAGSSVFGAPDPAQVITLLRGSVEEAQKRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15676" PGL_stop="10547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15676" e_stop="15454"/>
            <exon e_start="13267" e_stop="13160"/>
            <exon e_start="12867" e_stop="12685"/>
            <exon e_start="12588" e_stop="12483"/>
            <exon e_start="12319" e_stop="12137"/>
            <exon e_start="11534" e_stop="11375"/>
            <exon e_start="10888" e_stop="10547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.783" acc_prob="0.879" e_score="0.982"/>
          <exon-intron don_prob="0.797" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="15676" e_stop="15454" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.783" acc_prob="0.879">
            <gDNA_intron_boundary i_start="15453" i_stop="13268" i_length="2186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13267" e_stop="13160" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.797" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13159" i_stop="12868" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12867" e_stop="12685" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12684" i_stop="12589" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12588" e_stop="12483" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.987">
            <gDNA_intron_boundary i_start="12482" i_stop="12320" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12319" e_stop="12137" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12136" i_stop="11535" i_length="602"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11534" e_stop="11375" e_length="160"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11374" i_stop="10889" i_length="486"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="10888" e_stop="10547" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15676" stop="15454"/>
              <exon start="13267" stop="13160"/>
              <exon start="12867" stop="12685"/>
              <exon start="12588" stop="12483"/>
              <exon start="12319" stop="12137"/>
              <exon start="11534" stop="11375"/>
              <exon start="10888" stop="10547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTTTGACTCTTCTAAGCCAAAAAAATCCATCGACTTGATTTTTACCTTCTTAAACTTCTTTAGCATTGATTCTTGATACTTTTCTCTTGCAGATTTGCTGTTTTTGTTTTTTTTTTTTTCAATTTTTTCTAGCAAAGTTCAAATTTTGCTGGCACTTTGTTCAATAGATGTTACTGTAAGACAAAGGGTTGGATTCAGATAGCCACCTTCAAGGCAAAG : GTGATTAGTTTTCCAACTTTCCATATGCCTAATTATAGCAGTGCTATGTTGGAGCTTCATGGAGATATCTAATGTGCTTGGAGTTGAGCTAAAATGAAGACCACCAAG : CCAATCAAAGCAGAAAAAAAACTGCAGCCAAACAACACAGAAAAGAAACCATCAATTCAGGCTTCTCACGAGGCCCAAAATGACCAGCAGAACCATATAGCAGATACCCCTGTAGCTGATGCAGGTTCTGTTTCTGCATCAGGCAATGATAACAGAAAAGTTTCACGTGAAGATATTGAACTT : GTCCAAAACTTGATTGAAAGGTGCTTGCAGTTGTATATGAATAAGGATGAAGTCGTAAAAACACTTCTGAATCGTGCAAGGATAGATCCTGGATTCACAACTCTAG : TTTGGCAAAAATTAGAAGAAGAAAATGCAGATTTCTTTCGGGCCTACTACATTAGGCTTAAACTGAAGAAACAAATCGTCCTGTTCAATCATTTGCTTGAGCACCAGTATCATCTGATGAAATATCCAGTGCCTCCAAAAGTTCCGTTGGCTCCTATGCAGAATGGGATTAGTACCATGCCAG : TCAACAACTTACCCATGGGATATCCCGTCCTGCAGCAACCTCCAGTTCCAGCTGCAGGTCAACCTCATCTTGATCCAATGGGCATGTCCAACTGCCACGTGGTTAATGGTGTGCCTGCACCAGGAAACTATCATCCGATGAGGATGAATTCAGGAAACGA : GATGGTGATTGATACCAGTGTGGCAGATGTAGCAGCAGCTGTTCCACCTGGCAATGCCATGTCATCTATGTCAGATATGGCTGTTAGCCCTACATCAGTAGCTTCCAGCGGCCATTTTCCCTTTACCGCTTCAGAGATTTCGGGTATGGGAGTTGACACCTCAGCCCTTGATGCTGCCTTTCCATCTGATGTAGCAAGTTCAGTGGGATTACAACTACCACCAGATAATGGTGTTGGTAATTCTAGGGATTCACTTAGATCTTTGGCTCAGATTCCTTGGAACTTTAGTCTTTCAGATCTAACAGCAGATCTGTCAAACTTGGGAGGTAAGTTAACTTATGC</gDNA_template>
            <first_frame> S  S  L  T  L  L  S  Q  K  N  P  S  T  *  F  L  P  S  *  T  S  L  A  L  I  L  D  T  F  L  L  Q  I  C  C  F  C  F  F  F  F  Q  F  F  L  A  K  F  K  F  C  W  H  F  V  Q  *  M  L  L  *  D  K  G  L  D  S  D  S  H  L  Q  G  K   : G  D  *  F  S  N  F  P  Y  A  *  L  *  Q  C  Y  V  G  A  S  W  R  Y  L  M  C  L  E  L  S  *  N  E  D  H  Q   : A  N  Q  S  R  K  K  T  A  A  K  Q  H  R  K  E  T  I  N  S  G  F  S  R  G  P  K  *  P  A  E  P  Y  S  R  Y  P  C  S  *  C  R  F  C  F  C  I  R  Q  *  *  Q  K  S  F  T  *  R  Y  *  T   : C  P  K  L  D  *  K  V  L  A  V  V  Y  E  *  G  *  S  R  K  N  T  S  E  S  C  K  D  R  S  W  I  H  N  S  S :   L  A  K  I  R  R  R  K  C  R  F  L  S  G  L  L  H  *  A  *  T  E  E  T  N  R  P  V  Q  S  F  A  *  A  P  V  S  S  D  E  I  S  S  A  S  K  S  S  V  G  S  Y  A  E  W  D  *  Y  H  A  S :   Q  Q  L  T  H  G  I  S  R  P  A  A  T  S  S  S  S  C  R  S  T  S  S  *  S  N  G  H  V  Q  L  P  R  G  *  W  C  A  C  T  R  K  L  S  S  D  E  D  E  F  R  K  R  :  D  G  D  *  Y  Q  C  G  R  C  S  S  S  C  S  T  W  Q  C  H  V  I  Y  V  R  Y  G  C  *  P  Y  I  S  S  F  Q  R  P  F  S  L  Y  R  F  R  D  F  G  Y  G  S  *  H  L  S  P  *  C  C  L  S  I  *  C  S  K  F  S  G  I  T  T  T  T  R  *  W  C  W  *  F  *  G  F  T  *  I  F  G  S  D  S  L  E  L  *  S  F  R  S  N  S  R  S  V  K  L  G  R  *  V  N  L  C </first_frame>
            <second_frame>  L  L  *  L  F  *  A  K  K  I  H  R  L  D  F  Y  L  L  K  L  L  *  H  *  F  L  I  L  F  S  C  R  F  A  V  F  V  F  F  F  F  N  F  F  *  Q  S  S  N  F  A  G  T  L  F  N  R  C  Y  C  K  T  K  G  W  I  Q  I  A  T  F  K  A  K  :  V  I  S  F  P  T  F  H  M  P  N  Y  S  S  A  M  L  E  L  H  G  D  I  *  C  A  W  S  *  A  K  M  K  T  T  K  :  P  I  K  A  E  K  K  L  Q  P  N  N  T  E  K  K  P  S  I  Q  A  S  H  E  A  Q  N  D  Q  Q  N  H  I  A  D  T  P  V  A  D  A  G  S  V  S  A  S  G  N  D  N  R  K  V  S  R  E  D  I  E  L  :  V  Q  N  L  I  E  R  C  L  Q  L  Y  M  N  K  D  E  V  V  K  T  L  L  N  R  A  R  I  D  P  G  F  T  T  L   : V  W  Q  K  L  E  E  E  N  A  D  F  F  R  A  Y  Y  I  R  L  K  L  K  K  Q  I  V  L  F  N  H  L  L  E  H  Q  Y  H  L  M  K  Y  P  V  P  P  K  V  P  L  A  P  M  Q  N  G  I  S  T  M  P   : V  N  N  L  P  M  G  Y  P  V  L  Q  Q  P  P  V  P  A  A  G  Q  P  H  L  D  P  M  G  M  S  N  C  H  V  V  N  G  V  P  A  P  G  N  Y  H  P  M  R  M  N  S  G  N  E :   M  V  I  D  T  S  V  A  D  V  A  A  A  V  P  P  G  N  A  M  S  S  M  S  D  M  A  V  S  P  T  S  V  A  S  S  G  H  F  P  F  T  A  S  E  I  S  G  M  G  V  D  T  S  A  L  D  A  A  F  P  S  D  V  A  S  S  V  G  L  Q  L  P  P  D  N  G  V  G  N  S  R  D  S  L  R  S  L  A  Q  I  P  W  N  F  S  L  S  D  L  T  A  D  L  S  N  L  G  G  K  L  T  Y   </second_frame>
            <third_frame>   F  F  D  S  S  K  P  K  K  S  I  D  L  I  F  T  F  L  N  F  F  S  I  D  S  *  Y  F  S  L  A  D  L  L  F  L  F  F  F  F  S  I  F  S  S  K  V  Q  I  L  L  A  L  C  S  I  D  V  T  V  R  Q  R  V  G  F  R  *  P  P  S  R  Q  R :   *  L  V  F  Q  L  S  I  C  L  I  I  A  V  L  C  W  S  F  M  E  I  S  N  V  L  G  V  E  L  K  *  R  P  P  S :   Q  S  K  Q  K  K  N  C  S  Q  T  T  Q  K  R  N  H  Q  F  R  L  L  T  R  P  K  M  T  S  R  T  I  *  Q  I  P  L  *  L  M  Q  V  L  F  L  H  Q  A  M  I  T  E  K  F  H  V  K  I  L  N  L :   S  K  T  *  L  K  G  A  C  S  C  I  *  I  R  M  K  S  *  K  H  F  *  I  V  Q  G  *  I  L  D  S  Q  L  *  :  F  G  K  N  *  K  K  K  M  Q  I  S  F  G  P  T  T  L  G  L  N  *  R  N  K  S  S  C  S  I  I  C  L  S  T  S  I  I  *  *  N  I  Q  C  L  Q  K  F  R  W  L  L  C  R  M  G  L  V  P  C  Q  :  S  T  T  Y  P  W  D  I  P  S  C  S  N  L  Q  F  Q  L  Q  V  N  L  I  L  I  Q  W  A  C  P  T  A  T  W  L  M  V  C  L  H  Q  E  T  I  I  R  *  G  *  I  Q  E  T   : R  W  *  L  I  P  V  W  Q  M  *  Q  Q  L  F  H  L  A  M  P  C  H  L  C  Q  I  W  L  L  A  L  H  Q  *  L  P  A  A  I  F  P  L  P  L  Q  R  F  R  V  W  E  L  T  P  Q  P  L  M  L  P  F  H  L  M  *  Q  V  Q  W  D  Y  N  Y  H  Q  I  M  V  L  V  I  L  G  I  H  L  D  L  W  L  R  F  L  G  T  L  V  F  Q  I  *  Q  Q  I  C  Q  T  W  E  V  S  *  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13180" stop="13160"/>
                    <exon start="12867" stop="12685"/>
                    <exon start="12588" stop="12483"/>
                    <exon start="12319" stop="12137"/>
                    <exon start="11534" stop="11375"/>
                    <exon start="10888" stop="10549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMKTTKPIKAEKKLQPNNTEKKPSIQASHEAQNDQQNHIADTPVADAGSVSASGNDNRKVSREDIELVQNLIERCLQLYMNKDEVVKTLLNRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQIVLFNHLLEHQYHLMKYPVPPKVPLAPMQNGISTMPVNNLPMGYPVLQQPPVPAAGQPHLDPMGMSNCHVVNGVPAPGNYHPMRMNSGNEMVIDTSVADVAAAVPPGNAMSSMSDMAVSPTSVASSGHFPFTASEISGMGVDTSALDAAFPSDVASSVGLQLPPDNGVGNSRDSLRSLAQIPWNFSLSDLTADLSNLGGKLTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29232" PGL_stop="28693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29232" e_stop="28969"/>
            <exon e_start="28836" e_stop="28693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29232" e_stop="28969" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28968" i_stop="28837" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28836" e_stop="28693" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29232" stop="28969"/>
              <exon start="28836" stop="28693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCTGATTCCTTAATTTTGTTTGGAATTATTAACAATTTTTACTAAAATATGGGTTTCTGAAAAAACCCTTTTTTTTACAAGATTGAAACAATTAAGGTTTCAATTTCAAGAACATATTTTTTATTCTTAAATTTCAAATACATTCATTGAATTGCATGTTTGTATTCATTTCTTGAGCTCCCAGATAATATTCTGGCTCATTAGATAATAATATCAAGGGGTTGATTAGTGAATCACCTCAAATTTTCAAGAAAAAAGAG : GAGTGAATGAGTGATTTCAGCTGCTGGGGAGTTGAAAGTTGATTGCTTTTTTTATATGTGAAAAAAGGGAATGTTTTGTTGAGGATTTTTGAAGAGTTGTAGAATGGGATAGATGAAGGAATTTGGTGTTGTTGTATTTGTAGC</gDNA_template>
            <first_frame> K  F  *  F  L  N  F  V  W  N  Y  *  Q  F  L  L  K  Y  G  F  L  K  K  P  F  F  L  Q  D  *  N  N  *  G  F  N  F  K  N  I  F  F  I  L  K  F  Q  I  H  S  L  N  C  M  F  V  F  I  S  *  A  P  R  *  Y  S  G  S  L  D  N  N  I  K  G  L  I  S  E  S  P  Q  I  F  K  K  K  E  :  E  *  M  S  D  F  S  C  W  G  V  E  S  *  L  L  F  L  Y  V  K  K  G  N  V  L  L  R  I  F  E  E  L  *  N  G  I  D  E  G  I  W  C  C  C  I  C  S </first_frame>
            <second_frame>  N  S  D  S  L  I  L  F  G  I  I  N  N  F  Y  *  N  M  G  F  *  K  N  P  F  F  Y  K  I  E  T  I  K  V  S  I  S  R  T  Y  F  L  F  L  N  F  K  Y  I  H  *  I  A  C  L  Y  S  F  L  E  L  P  D  N  I  L  A  H  *  I  I  I  S  R  G  *  L  V  N  H  L  K  F  S  R  K  K  R :   S  E  *  V  I  S  A  A  G  E  L  K  V  D  C  F  F  Y  M  *  K  K  G  M  F  C  *  G  F  L  K  S  C  R  M  G  *  M  K  E  F  G  V  V  V  F  V   </second_frame>
            <third_frame>   I  L  I  P  *  F  C  L  E  L  L  T  I  F  T  K  I  W  V  S  E  K  T  L  F  F  T  R  L  K  Q  L  R  F  Q  F  Q  E  H  I  F  Y  S  *  I  S  N  T  F  I  E  L  H  V  C  I  H  F  L  S  S  Q  I  I  F  W  L  I  R  *  *  Y  Q  G  V  D  *  *  I  T  S  N  F  Q  E  K  R   : G  V  N  E  *  F  Q  L  L  G  S  *  K  L  I  A  F  F  I  C  E  K  R  E  C  F  V  E  D  F  *  R  V  V  E  W  D  R  *  R  N  L  V  L  L  Y  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0066O01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32546" PGL_stop="30506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32546" e_stop="32426"/>
            <exon e_start="32183" e_stop="32157"/>
            <exon e_start="32042" e_stop="31920"/>
            <exon e_start="31834" e_stop="31594"/>
            <exon e_start="30691" e_stop="30506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32546" e_stop="32426" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32425" i_stop="32184" i_length="242"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32183" e_stop="32157" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32156" i_stop="32043" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32042" e_stop="31920" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.945">
            <gDNA_intron_boundary i_start="31919" i_stop="31835" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31834" e_stop="31594" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31593" i_stop="30692" i_length="902"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="30691" e_stop="30506" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32546" stop="32426"/>
              <exon start="32183" stop="32157"/>
              <exon start="32042" stop="31920"/>
              <exon start="31834" stop="31594"/>
              <exon start="30691" stop="30506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32495" stop="32426"/>
              <exon start="32183" stop="32157"/>
              <exon start="32042" stop="31920"/>
              <exon start="31834" stop="31594"/>
              <exon start="30691" stop="30576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATAGCCACTCCTCTCTAGTACTACTGTTTCTTACTAGTTGAGTGTTCATTCAACAAAAAAATGGGTTCAGACAACAATGTTCTTGCTGTAATTGCCAAAAATATTGATGTTCTTGCTTT : GCCTCTAATCTCTCTTGTTTATCCTCT : GTATACATCTATTAAGGCAATTGAAACAAAGTCTCGTGCAGATGATCGACAATGGCTAACGTATTGGGTTCTTTATTCTTTGATTACTCTCTTTGAACTTAGCTTTTCTAAGCTCATTGAATG : GTTTCCAATATGGTCTTATGCAAAACTAGCTGCAATATGTTGGCTAGTTTTACCTTACTTCAATGGAGCATGTTATGTTTATGAGAATTTTATAAGACCATTTTATAGAAATCCACAAGTTAAAATATGGTATGTTCCTTTGAAGAAGGATATTTTTAGTAAGCCAGATGATGTTCTAACTGCTGCTGAAAAATATATTGAAGAACATGGACCACAAGCATTTGAAAGGCTTTTAGCCAAG : GCTGATAGAGATGCAAGAACCAGGAGGAACAACTACATGACCTTTGATGATGATTATCGATATTAATTAATTTCTCTTTGTACTATTAAATTACTTCTTAATTACTTACTTTGATGAACTATGTTTCGATAATCCTTTCAGTTTCCACTCATAATTAAGAATATTTAATCTGCTACGTTCAAATTA</gDNA_template>
            <first_frame> *  *  P  L  L  S  S  T  T  V  S  Y  *  L  S  V  H  S  T  K  K  W  V  Q  T  T  M  F  L  L  *  L  P  K  I  L  M  F  L  L   : C  L  *  S  L  L  F  I  L   : C  I  H  L  L  R  Q  L  K  Q  S  L  V  Q  M  I  D  N  G  *  R  I  G  F  F  I  L  *  L  L  S  L  N  L  A  F  L  S  S  L  N   : G  F  Q  Y  G  L  M  Q  N  *  L  Q  Y  V  G  *  F  Y  L  T  S  M  E  H  V  M  F  M  R  I  L  *  D  H  F  I  E  I  H  K  L  K  Y  G  M  F  L  *  R  R  I  F  L  V  S  Q  M  M  F  *  L  L  L  K  N  I  L  K  N  M  D  H  K  H  L  K  G  F  *  P  R :   L  I  E  M  Q  E  P  G  G  T  T  T  *  P  L  M  M  I  I  D  I  N  *  F  L  F  V  L  L  N  Y  F  L  I  T  Y  F  D  E  L  C  F  D  N  P  F  S  F  H  S  *  L  R  I  F  N  L  L  R  S  N   </first_frame>
            <second_frame>  N  S  H  S  S  L  V  L  L  F  L  T  S  *  V  F  I  Q  Q  K  N  G  F  R  Q  Q  C  S  C  C  N  C  Q  K  Y  *  C  S  C  F  :  A  S  N  L  S  C  L  S  S  :  V  Y  I  Y  *  G  N  *  N  K  V  S  C  R  *  S  T  M  A  N  V  L  G  S  L  F  F  D  Y  S  L  *  T  *  L  F  *  A  H  *  M  :  V  S  N  M  V  L  C  K  T  S  C  N  M  L  A  S  F  T  L  L  Q  W  S  M  L  C  L  *  E  F  Y  K  T  I  L  *  K  S  T  S  *  N  M  V  C  S  F  E  E  G  Y  F  *  *  A  R  *  C  S  N  C  C  *  K  I  Y  *  R  T  W  T  T  S  I  *  K  A  F  S  Q   : G  *  *  R  C  K  N  Q  E  E  Q  L  H  D  L  *  *  *  L  S  I  L  I  N  F  S  L  Y  Y  *  I  T  S  *  L  L  T  L  M  N  Y  V  S  I  I  L  S  V  S  T  H  N  *  E  Y  L  I  C  Y  V  Q  I  </second_frame>
            <third_frame>   I  A  T  P  L  *  Y  Y  C  F  L  L  V  E  C  S  F  N  K  K  M  G  S  D  N  N  V  L  A  V  I  A  K  N  I  D  V  L  A  L :   P  L  I  S  L  V  Y  P  L :   Y  T  S  I  K  A  I  E  T  K  S  R  A  D  D  R  Q  W  L  T  Y  W  V  L  Y  S  L  I  T  L  F  E  L  S  F  S  K  L  I  E  W :   F  P  I  W  S  Y  A  K  L  A  A  I  C  W  L  V  L  P  Y  F  N  G  A  C  Y  V  Y  E  N  F  I  R  P  F  Y  R  N  P  Q  V  K  I  W  Y  V  P  L  K  K  D  I  F  S  K  P  D  D  V  L  T  A  A  E  K  Y  I  E  E  H  G  P  Q  A  F  E  R  L  L  A  K  :  A  D  R  D  A  R  T  R  R  N  N  Y  M  T  F  D  D  D  Y  R  Y  *  L  I  S  L  C  T  I  K  L  L  L  N  Y  L  L  *  *  T  M  F  R  *  S  F  Q  F  P  L  I  I  K  N  I  *  S  A  T  F  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32526" stop="32426"/>
                    <exon start="32183" stop="32157"/>
                    <exon start="32042" stop="31920"/>
                    <exon start="31834" stop="31594"/>
                    <exon start="30691" stop="30626"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYCFLLVECSFNKKMGSDNNVLAVIAKNIDVLALPLISLVYPLYTSIKAIETKSRADDRQWLTYWVLYSLITLFELSFSKLIEWFPIWSYAKLAAICWLVLPYFNGACYVYENFIRPFYRNPQVKIWYVPLKKDIFSKPDDVLTAAEKYIEEHGPQAFERLLAKADRDARTRRNNYMTFDDDYRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="34262" PGL_stop="43661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34262" e_stop="34389"/>
            <exon e_start="43249" e_stop="43661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.844"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.844">
            <gDNA_exon_boundary e_start="34262" e_stop="34389" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34390" i_stop="43248" i_length="8859"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="43249" e_stop="43661" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34262" stop="34389"/>
              <exon start="43249" stop="43661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334521" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGCATTGGGCATCCTAAGAACTTGTGACCAGAAATTGTGACTTCCAATTGGATTCTTGAAACTAATCATCTGTTCAAAATTAAAAAGAATAATTAGATCGTCGCTTTGAGAATTACTAAAGATATT : GTAATTAGAAGTAAGAAGCAATTGAAACTCACATTGTTTACAAAAGGGGTCATAAGACCACATAGTGCTGCATCACAGTGGATGTAAAATCGATCATGTGAATAGCCACATTCTTTGAGTGTTTCAAGAATAACATCAACATCATCAATAGCTCCTTTGAACGTAGTTCCTATAGTTAAAAGAACCATCATTGGAAAAGACTTAAGATGACTGATTTGATCACATAAAAGAAAAAATGAAAAATGATAAGAGGTTGGAGTATACGTATATACCAATTGTGACATTTATAATAGCTGGTTTGTCCTTATTTTGAAGTAACTTTGCTCTTAAATCTGAATAGTCCATCTCTCCATTTACTGATGTATTGATTGTTTCTGAATCCATTCTATACATTCTTGCAGCTTTGAATACTG</gDNA_template>
            <first_frame> K  A  L  G  I  L  R  T  C  D  Q  K  L  *  L  P  I  G  F  L  K  L  I  I  C  S  K  L  K  R  I  I  R  S  S  L  *  E  L  L  K  I  L :   *  L  E  V  R  S  N  *  N  S  H  C  L  Q  K  G  S  *  D  H  I  V  L  H  H  S  G  C  K  I  D  H  V  N  S  H  I  L  *  V  F  Q  E  *  H  Q  H  H  Q  *  L  L  *  T  *  F  L  *  L  K  E  P  S  L  E  K  T  *  D  D  *  F  D  H  I  K  E  K  M  K  N  D  K  R  L  E  Y  T  Y  I  P  I  V  T  F  I  I  A  G  L  S  L  F  *  S  N  F  A  L  K  S  E  *  S  I  S  P  F  T  D  V  L  I  V  S  E  S  I  L  Y  I  L  A  A  L  N  T  </first_frame>
            <second_frame>  R  H  W  A  S  *  E  L  V  T  R  N  C  D  F  Q  L  D  S  *  N  *  S  S  V  Q  N  *  K  E  *  L  D  R  R  F  E  N  Y  *  R  Y   : C  N  *  K  *  E  A  I  E  T  H  I  V  Y  K  R  G  H  K  T  T  *  C  C  I  T  V  D  V  K  S  I  M  *  I  A  T  F  F  E  C  F  K  N  N  I  N  I  I  N  S  S  F  E  R  S  S  Y  S  *  K  N  H  H  W  K  R  L  K  M  T  D  L  I  T  *  K  K  K  *  K  M  I  R  G  W  S  I  R  I  Y  Q  L  *  H  L  *  *  L  V  C  P  Y  F  E  V  T  L  L  L  N  L  N  S  P  S  L  H  L  L  M  Y  *  L  F  L  N  P  F  Y  T  F  L  Q  L  *  I  L </second_frame>
            <third_frame>   G  I  G  H  P  K  N  L  *  P  E  I  V  T  S  N  W  I  L  E  T  N  H  L  F  K  I  K  K  N  N  *  I  V  A  L  R  I  T  K  D  I  :  V  I  R  S  K  K  Q  L  K  L  T  L  F  T  K  G  V  I  R  P  H  S  A  A  S  Q  W  M  *  N  R  S  C  E  *  P  H  S  L  S  V  S  R  I  T  S  T  S  S  I  A  P  L  N  V  V  P  I  V  K  R  T  I  I  G  K  D  L  R  *  L  I  *  S  H  K  R  K  N  E  K  *  *  E  V  G  V  Y  V  Y  T  N  C  D  I  Y  N  S  W  F  V  L  I  L  K  *  L  C  S  *  I  *  I  V  H  L  S  I  Y  *  C  I  D  C  F  *  I  H  S  I  H  S  C  S  F  E  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0066O01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="70364" PGL_stop="71968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70364" e_stop="71156"/>
            <exon e_start="71887" e_stop="71968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70364" e_stop="71156" e_length="793"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71157" i_stop="71886" i_length="730"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71887" e_stop="71968" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70364" stop="71156"/>
              <exon start="71887" stop="71968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAACAGAGATTCTCTTAAAGCTTCCTGTCAAATCTCTGTCGAAATTCATGTGCGTTTCTAAATCATGGCTTCAACTAATCTCTAGCCCTGATTTCGTGAAAAACCATATCAAGTTAACTGCTAATGACAAACGATACATCCATCACAGGCTTATATTTCGAAAAACCAATGATGATTTCAAGTTTTGTCCTCTCCTTCCCTTATTTACCAAACAACAACTCATTGAGGAGCTATTCCACATCAAAAGATCCTCTTTATCAACTCACATTGTCGGCTCCGTCAATGGGTTGATTTGTGTTGTCCATGGCAAAAAAGAGGCATATATATGGAACCCCACTATTACCAAATCAAAGGAATTACCCAAGTTTACATGTAATTTGTGCTCTGGTTATATCAGATATGGTTTCGGATATGATGAGTCACGTGATGATTATAAAGTCGTATTTATCAATTATCCTTATAATCATTCTAGTAGTTCCGATATGACGACTGTGGTCAACATATGTAGTTTAAGGACTAATTCTTGGACAACACTCCATGATCAGCTTCAGGGCATCTTTCTATTAAATCAATATGGTAGATTTGTCAATGGGAAGCTTTATTGGACTTCATCGACTCGTAATAATCACTACAAGGTGTGCAACATCACTTCCTTTGATTTAGCAGACGGGACGTGGGGAAGCTTGGAGCTTCCCAGTTGTGGAAAAGACGATTTTGATATCAATTTGGGAGTTGTGGGAAGTGATCTTTCTCTGCTTTATACTTGTCGACGAGGTGCTGCTACCTCTGAT : GAAGTGGAAGCTAATGTTGAACACTAATCAATAGTTGCTGCTGAGTTCATGGATCGAAATGATGAAGCCTTGTGATTATCTG</gDNA_template>
            <first_frame> H  N  R  D  S  L  K  A  S  C  Q  I  S  V  E  I  H  V  R  F  *  I  M  A  S  T  N  L  *  P  *  F  R  E  K  P  Y  Q  V  N  C  *  *  Q  T  I  H  P  S  Q  A  Y  I  S  K  N  Q  *  *  F  Q  V  L  S  S  P  S  L  I  Y  Q  T  T  T  H  *  G  A  I  P  H  Q  K  I  L  F  I  N  S  H  C  R  L  R  Q  W  V  D  L  C  C  P  W  Q  K  R  G  I  Y  M  E  P  H  Y  Y  Q  I  K  G  I  T  Q  V  Y  M  *  F  V  L  W  L  Y  Q  I  W  F  R  I  *  *  V  T  *  *  L  *  S  R  I  Y  Q  L  S  L  *  S  F  *  *  F  R  Y  D  D  C  G  Q  H  M  *  F  K  D  *  F  L  D  N  T  P  *  S  A  S  G  H  L  S  I  K  S  I  W  *  I  C  Q  W  E  A  L  L  D  F  I  D  S  *  *  S  L  Q  G  V  Q  H  H  F  L  *  F  S  R  R  D  V  G  K  L  G  A  S  Q  L  W  K  R  R  F  *  Y  Q  F  G  S  C  G  K  *  S  F  S  A  L  Y  L  S  T  R  C  C  Y  L  *   : *  S  G  S  *  C  *  T  L  I  N  S  C  C  *  V  H  G  S  K  *  *  S  L  V  I  I   </first_frame>
            <second_frame>  I  T  E  I  L  L  K  L  P  V  K  S  L  S  K  F  M  C  V  S  K  S  W  L  Q  L  I  S  S  P  D  F  V  K  N  H  I  K  L  T  A  N  D  K  R  Y  I  H  H  R  L  I  F  R  K  T  N  D  D  F  K  F  C  P  L  L  P  L  F  T  K  Q  Q  L  I  E  E  L  F  H  I  K  R  S  S  L  S  T  H  I  V  G  S  V  N  G  L  I  C  V  V  H  G  K  K  E  A  Y  I  W  N  P  T  I  T  K  S  K  E  L  P  K  F  T  C  N  L  C  S  G  Y  I  R  Y  G  F  G  Y  D  E  S  R  D  D  Y  K  V  V  F  I  N  Y  P  Y  N  H  S  S  S  S  D  M  T  T  V  V  N  I  C  S  L  R  T  N  S  W  T  T  L  H  D  Q  L  Q  G  I  F  L  L  N  Q  Y  G  R  F  V  N  G  K  L  Y  W  T  S  S  T  R  N  N  H  Y  K  V  C  N  I  T  S  F  D  L  A  D  G  T  W  G  S  L  E  L  P  S  C  G  K  D  D  F  D  I  N  L  G  V  V  G  S  D  L  S  L  L  Y  T  C  R  R  G  A  A  T  S  D  :  E  V  E  A  N  V  E  H  *  S  I  V  A  A  E  F  M  D  R  N  D  E  A  L  *  L  S  </second_frame>
            <third_frame>   *  Q  R  F  S  *  S  F  L  S  N  L  C  R  N  S  C  A  F  L  N  H  G  F  N  *  S  L  A  L  I  S  *  K  T  I  S  S  *  L  L  M  T  N  D  T  S  I  T  G  L  Y  F  E  K  P  M  M  I  S  S  F  V  L  S  F  P  Y  L  P  N  N  N  S  L  R  S  Y  S  T  S  K  D  P  L  Y  Q  L  T  L  S  A  P  S  M  G  *  F  V  L  S  M  A  K  K  R  H  I  Y  G  T  P  L  L  P  N  Q  R  N  Y  P  S  L  H  V  I  C  A  L  V  I  S  D  M  V  S  D  M  M  S  H  V  M  I  I  K  S  Y  L  S  I  I  L  I  I  I  L  V  V  P  I  *  R  L  W  S  T  Y  V  V  *  G  L  I  L  G  Q  H  S  M  I  S  F  R  A  S  F  Y  *  I  N  M  V  D  L  S  M  G  S  F  I  G  L  H  R  L  V  I  I  T  T  R  C  A  T  S  L  P  L  I  *  Q  T  G  R  G  E  A  W  S  F  P  V  V  E  K  T  I  L  I  S  I  W  E  L  W  E  V  I  F  L  C  F  I  L  V  D  E  V  L  L  P  L  M :   K  W  K  L  M  L  N  T  N  Q  *  L  L  L  S  S  W  I  E  M  M  K  P  C  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0066O01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70365" stop="71156"/>
                    <exon start="71887" stop="71913"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITEILLKLPVKSLSKFMCVSKSWLQLISSPDFVKNHIKLTANDKRYIHHRLIFRKTNDDFKFCPLLPLFTKQQLIEELFHIKRSSLSTHIVGSVNGLICVVHGKKEAYIWNPTITKSKELPKFTCNLCSGYIRYGFGYDESRDDYKVVFINYPYNHSSSSDMTTVVNICSLRTNSWTTLHDQLQGIFLLNQYGRFVNGKLYWTSSTRNNHYKVCNITSFDLADGTWGSLELPSCGKDDFDINLGVVGSDLSLLYTCRRGAATSDEVEANVEH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 21280 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2128 bytes was the average size of a spliced alignment
$ 12352 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2058 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:28:15
-->
