<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:22:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331869" ref_strand="+" ref_description="SGN-E331869 [cTOD-7-P3]">
      <seq>tttttctctttgagtttactttcctttctttgttgttttcccctcaatttcatatcttatgagagttatttggtgaatggggttgcaagatttcttgttgaatacagtaaaaaactgatctttcttgtttttttctatcaagaaaatgtggggagctgaaagaaaacagagattcaagaaaggaatagagtgaaaaatcaaatattttttctcccctcttgcatttttatagcctgctacattcaatcagcacaatgaggaagcatggatggcaacttccctatcatcctctccaggtggtagctgttgctgtgtttctggcactgggatttgctttctatgtcttctttgcaccttttgtgggaaagaaattgtttcagtatattgtgatggggctttatactcctcttataattagtgcatttggcttgtatatctggtgcgctgctgctgatcctgctgatccaggagtttttagatccaagaagtatattaagaagctagaccacgaaaagcaagttcaacttaaagaatctaaattagggtgcgagacgaattcttctatacaagatgctaatgctgcatcgattggggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1" stop="2293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75" g_stop="370" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="371" i_stop="526" i_length="156">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="527" g_stop="640" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="410" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="1803" i_length="1163">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1804" g_stop="1993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="600" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E331869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75" e_stop="370"/>
          <exon e_start="527" e_stop="640"/>
          <exon e_start="1804" e_stop="1993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTTGAGTTTACTTTCCTTTCTTTGTTGTTTTCCCCTCAATTTCATATCTTATGAGAGTTATTTGGTGAATGGGGTTGCAAGATTTCTTGTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAGGTTCTAACTTTTTCTCTTTTGTATGTGTGTGGGGTATGGGAGGGGGAGGGGGTAGAGGTTGGGGAGGGCTCTATTCATGTGTACATTTTGAGCTCTGGTTTATCTAATTTGAGAATTCTGCAAACCTGTGTTTGATTTAGGTATTTATCTTTGCAGGTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTTGTAAGCCATCTTGAGTTCTTTGTCTTCTCTTTTGTCTTTCATATCTGCATTTTGTCAAGGCAATGAAGAACTCAGATCTATCTTTTAGCTGCCATCAGTGTTTCAGATCTTCCCTCTGTGTTTCATTGTACTTTCTGGATTTTGTTCTGCCTTTTTCTTCTCCTGCCACCTCTGTCAAATTTCTCATGTTCTTTTGTTTTGAATGTTGGTTTGTTTCCTTTCTTTAGGTTGTTCCATCTGTAGGACTTAATACTCATAATTATGGAGATTTTCAGTCTATTTGATACAATGTAAGCAAGTGGAGGGCAAATCCTGTGTTTGAACTTAACAACTTAATAGGTTCAAGTTTCTTAGCTAGCGTATAACCATAGATTTTGGATCAGATTTTGAAAATTTATCTTTTTCAAGTATTTGTTTGGCCATGGTATTTTGTTCATATATTAAAAATCTGACCTTGAAATATTTTGAAGTTCCCAAAACTTCAAATTTTTTCCAAGTATATAATGTATGTCCTAACATAACTTCAAGTTCCAAAAACTACCACTTCAAAACTCAATTTTTCAAGATGCAACTTCAAAATCTATGACCAAACTTTAGCTTAGTTCTTTGGAAATGTAGGTTCAGAATTTGACTAGACTACCTTTTGTTTTTTCACATACATATCTACTATTTACACTGAAGACGAATGGTTCTAATGAATGGACTCCCAACACTCTATGTCCACCTTTGAGAACATTTGGATGATAAACTTGATTTGGTGGTGCAGGATTCCTGTCAGAAAAATCACATCTTTTCTTTTTAATCTAGAAGTAATCAATTTAGGTGTTTTTAGCCATACGTTAGCTGCCCAAAGTAATTGGAAGATTTTGAGTGTTCAGTACCAATTCCAGCTGAAAAATGGATTTGATAGAGAATTATATTGTCTCTCGCATCATCATGTAGCACAATGTTGTTTTGAATAAAGAAGATTTCAACACGGTACTGGATTCTGTAACTACTTCTTAATTTATAGAATGGCAAATGAGATTGGTGATGTCTATTTTTCATGAATCAGATGATACATCTCAACAACCTAATATGTGAATGGGTTTAATACTTTTGCTGTTGTAACATGTAAGTTTTCATTTGAAGGCATCTGGTATATAATCCTTTGTTTTCTCCAGATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATG</genome_strand>
        <mrna_strand>TTTTTCTCTTTGAGTTTACTTTCCTTTCTTTGTTGTTTTCCCCTCAATTTCATATCTTATGAGAGTTATTTGGTGAATGGGGTTGCAAGATTTCTTGTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAG............................................................................................................................................................GTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746480" ref_strand="+" ref_description="SGN-E746480 [GI|47104974]">
      <seq>gactttcctttctttgttgttttcccctcaatttcatatcttatgagagttatttggtgaatggggttgcaagatttcttgttgaatacagtaaaaaactgatctttcttgtttttttctatcaagaaaatgtggggagctgaaagaaaacagagattcaagaaaggaatagagtgaaaaatcaaatattttttctcccctcttgcatttttatagcctgctacattcaatcagcacaatgaggaagcatggatggcaacttccctatcatcctctccaggtggtagctgttgctgtgtttctggcactgggatttgctttctatgtcttctttgcaccttttgtgggaaagaaattgtttcagtatattgtgatggggctttatactcctcttataattagtgcatttggcttgtatatctggtgcgctgctgctgatcctgctgatccaggagtttttagatccaagaagtatattaagaagctagaccacgaaaagcaagttcaacttaaagaatctaaattagggtgcgagacgaattcttctatacaagatgctaatgctgcatcgattggggaaaatgcatctggaaaaagcaacaaaggagctgaaccagctgcagatcacaatgaaactgaacagaaaattacagctactcgtgaacgatctttctcttccggattgttggctctactaccttgtgctcttatcagcaactgcacaggcagacatgaggagtcttctcagcaacagttgagtgaagatggcatgttctactgcagtttgtgtgaagtagaggtatttaaatacagcaagcattgcagagtatgtgacaagtgcgtcgatcagtttgaccatcattgcaggtggataaacaactgtatagggaaaaggaactatcgcaagttctttgcgctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgtactaatctgctgctttatcgagaagaagaaattttctgcggaaatcacctccaaattaggaagcagtttctccattgttccttttgttattgtagtggctgtctgtaccatcttggccatgatagcaaccctgccactagctcaacttttcttctttcacatacttctcataaagaagggaattagcacctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagcagcatggtgcacaccacctcgcctttttgttgaggatcagtatgatgtagttcctcctgatacagtatcggtcagttcacttgggaaaaggtcaatggcggatgaacctatcaagaaaaagaatccagctgccgtgaagattagcccatggacactagcacgattaaatgcggaggatgtttcaaaagctgctgctgaagcaaggaaaaaatcgaaaattcttcagtcagtggtgagaaacaaagaaccttacattcttgaaacaaatagcagtttaggaagtagcgggcgtcgcatggtgcctaggcttgataacaatagaaggagagctagtaaacgagttagactccctgcagagttaccctttgaaaccatgagtaaaattcccaatgatatagctcaaaacagcagaagacccatgctaactgagtcatcaagcagtttagctccccttcagcttgaagcacggagtgatttccgaacaacccgaggactgtccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaacccaggctaacatcaggaagcattaagcctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttgacatttcttaatttgttgatgatgtttgtccagtagtatataccatcaacttggtctgttccattgtccattgagttcaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaacattatgtctattctcttgtcctcaaaatgcagagcattcaatgatcagttcttgctgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1" stop="6541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91" g_stop="370" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="371" i_stop="526" i_length="156">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="527" g_stop="640" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="394" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="1803" i_length="1163">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1804" g_stop="2208" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="799" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2707" g_stop="2775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="868" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2891" g_stop="2962" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="940" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="1069" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1150" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4173" g_stop="4355" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1333" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="5196" g_stop="6251" g_length="1056"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="2389" r_length="1056" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E746480" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2389</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91" e_stop="370"/>
          <exon e_start="527" e_stop="640"/>
          <exon e_start="1804" e_stop="2208"/>
          <exon e_start="2707" e_stop="2775"/>
          <exon e_start="2891" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4355"/>
          <exon e_start="5196" e_stop="6251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCCTTTCTTTGTTGTTTTCCCCTCAATTTCATATCTTATGAGAGTTATTTGGTGAATGGGGTTGCAAGATTTCTTGTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAGGTTCTAACTTTTTCTCTTTTGTATGTGTGTGGGGTATGGGAGGGGGAGGGGGTAGAGGTTGGGGAGGGCTCTATTCATGTGTACATTTTGAGCTCTGGTTTATCTAATTTGAGAATTCTGCAAACCTGTGTTTGATTTAGGTATTTATCTTTGCAGGTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTTGTAAGCCATCTTGAGTTCTTTGTCTTCTCTTTTGTCTTTCATATCTGCATTTTGTCAAGGCAATGAAGAACTCAGATCTATCTTTTAGCTGCCATCAGTGTTTCAGATCTTCCCTCTGTGTTTCATTGTACTTTCTGGATTTTGTTCTGCCTTTTTCTTCTCCTGCCACCTCTGTCAAATTTCTCATGTTCTTTTGTTTTGAATGTTGGTTTGTTTCCTTTCTTTAGGTTGTTCCATCTGTAGGACTTAATACTCATAATTATGGAGATTTTCAGTCTATTTGATACAATGTAAGCAAGTGGAGGGCAAATCCTGTGTTTGAACTTAACAACTTAATAGGTTCAAGTTTCTTAGCTAGCGTATAACCATAGATTTTGGATCAGATTTTGAAAATTTATCTTTTTCAAGTATTTGTTTGGCCATGGTATTTTGTTCATATATTAAAAATCTGACCTTGAAATATTTTGAAGTTCCCAAAACTTCAAATTTTTTCCAAGTATATAATGTATGTCCTAACATAACTTCAAGTTCCAAAAACTACCACTTCAAAACTCAATTTTTCAAGATGCAACTTCAAAATCTATGACCAAACTTTAGCTTAGTTCTTTGGAAATGTAGGTTCAGAATTTGACTAGACTACCTTTTGTTTTTTCACATACATATCTACTATTTACACTGAAGACGAATGGTTCTAATGAATGGACTCCCAACACTCTATGTCCACCTTTGAGAACATTTGGATGATAAACTTGATTTGGTGGTGCAGGATTCCTGTCAGAAAAATCACATCTTTTCTTTTTAATCTAGAAGTAATCAATTTAGGTGTTTTTAGCCATACGTTAGCTGCCCAAAGTAATTGGAAGATTTTGAGTGTTCAGTACCAATTCCAGCTGAAAAATGGATTTGATAGAGAATTATATTGTCTCTCGCATCATCATGTAGCACAATGTTGTTTTGAATAAAGAAGATTTCAACACGGTACTGGATTCTGTAACTACTTCTTAATTTATAGAATGGCAAATGAGATTGGTGATGTCTATTTTTCATGAATCAGATGATACATCTCAACAACCTAATATGTGAATGGGTTTAATACTTTTGCTGTTGTAACATGTAAGTTTTCATTTGAAGGCATCTGGTATATAATCCTTTGTTTTCTCCAGATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATGCATCTGGAAAAAGCAACAAAGGAGCTGAACCAGCTGCAGATCACAATGAAACTGAACAGAAAATTACAGCTACTCGTGAACGATCTTTCTCTTCCGGATTGTTGGCTCTACTACCTTGTGCTCTTATCAGCAACTGCACAGGCAGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAGGTTTGTAACTTCACATCCCATCATTTCTCGTGCTTCCACTTTGAGGCATTATTATGTACTGAATTTAGAATTATTCCGCAAGAAATCTTGTTGTAAAACAAACATATACTCCCGCCGCTTCAATTTGTTTGTTGGTTTTGACTTGGCATGGAGTTAATGAAAGTAAATATGACTTTTGGATCTTGTGGTCTTAAGCTAAAGATATGTTGAATGAACCAAAATGCTCTTTAATCTTGTGGTTTTGAACATGTCATGTCAAAAGTTAGAAATAAATAATTGCCAAAAACAAGACTTCTTTGTTTTGGAACAGACTAAAGAAGGAAGGAAGTCAAACAAATTGAAAGGAAGACAGTATTATTTTTTGTTTTTCACTTGGTATAATAATTCTCAATTTTGCTTAAAACTGATGTTCTTAGCTTGATAGACCTGTTCTTATTATAGTAAGATTGCTATAATGCCTGTTCATATGATATGCTCAATGCTGGATGACACTTGCAGGTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGGGTATTTGACAACCTTGAGTAGTCTGAAATGTCGTATATACATCATAGATGCTCGACTGTGTCGACGTTTATGTAAAAACTTATTAATCTTATTTTTCTGTTTTTGGTTTCTGTAGTGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAGGTATGGTTCAAGAAAAAATCTAATATGACAAGTTCGAGTAATTTAGTAGTACTAAACAGTTGGTTATGGTATCAGCAGACCTTCATTGAGTTTGCAGTGTGAATTTATAATTATCTTTTAGTTGGTTATGGTGTTAGCAGCCCTTTAGTGAGTTTGTGGTGCTTATTTTTGTAAAAGTCTTTCAGTTGGCTTCTCATATTTGAATTTAGTTTCTATTTCACATTTCTTAGCTTCAATTCCATAACTAATCAAAAGAAAAGAAATTCTATTTAGCCCGGTAATGTGGAAAATGCTTTGCCGGCTTGTGGATAGAGGCTCTTTGAAGTGGACTCCTGCAAGAAAGTATGTTCAGTATTTTGGCTCTTCTGTTGTCAAAAGAGATTTTAGAAAATTAAACCTTGTGCTGGTGCCGTGAAGGTTTGCGAATTTTTCCTTGTGAGGACAGTAATCCACTTTGACAGATAGCAAATCCTGAACAGTTCTCTCTTAAGTTGATTCTTTGGTGTGGCTGTTACAACCATTAAGGGATTCTGTGGTTGTGATTGGTATAAGGTAGGACTCATATGGTCTGGTTATTGTTAGAGATTGAGAATGACATAGCATTGAGAGATTTAAGAGGGATTGTTTTTTTATGCTTGACACATTCTGTTTGATGTAATATTTCCAATTCTGTTTTTTTTTCTTTCCTCATATAAAAGCCGAAGGGACTTGAGCAATTTTCCTCTACAGTAGTATCAAGTATATTTCTTGAGCTGGGTAGTGTATGCGTTGATGCTTTTGTATAGGTGAATAGGAAAAGGTTAATGTACTTTCGTTTAACTTTTTGGTGGTTCCCTGCAGTATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAGAA</genome_strand>
        <mrna_strand>GACTTTCCTTTCTTTGTTGTTTTCCCCTCAATTTCATATCTTATGAGAGTTATTTGGTGAATGGGGTTGCAAGATTTCTTGTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAG............................................................................................................................................................GTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATGCATCTGGAAAAAGCAACAAAGGAGCTGAACCAGCTGCAGATCACAATGAAACTGAACAGAAAATTACAGCTACTCGTGAACGATCTTTCTCTTCCGGATTGTTGGCTCTACTACCTTGTGCTCTTATCAGCAACTGCACAGGCAGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG...................................................................................................................TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGTCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462896" ref_strand="+" ref_description="SGN-E462896 [cPRO-13-C17]">
      <seq>gttgaatacagtaaaaaactgatcttttttgtttttcctatcaagaaaatgtggggagctgaaagaaaacagagattcaagataggaatagagtgaaaaatcaaatcttttttctcccctcttgcatttttataggctgctacattcaatcagcacaatgaggaagcatggatggcaacttccctatcatcctcttcaggtggtagctgttgctgtatttctggcattgggatttgctttctatgtcttctttgcaccttttgtgggaaagaaattgcttcagtatattgtgatggggctttatactcctcttataattagtgcatttggcttgtatatctggtgcgctgctgctgatcctgctgatccaggagtttttaaatccaagaagtatcttacgaagctagaccacaaaaagcaagttcaacttaaagaatctaaattagggtgtgagacaaattcgtctattcaagatgctaatgctgcatcgattggggaaaatgcatctgggaaaagcaataaaggagctgaaccagctgcagatcacaatgaaactgaacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1" stop="2357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="171" g_stop="370" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="371" i_stop="526" i_length="156">
            <donor d_prob="0.497" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="527" g_stop="640" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="313" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="1803" i_length="1163">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1804" g_stop="2057" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="567" r_length="254" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E462896" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="171" e_stop="370"/>
          <exon e_start="527" e_stop="640"/>
          <exon e_start="1804" e_stop="2057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAGGTTCTAACTTTTTCTCTTTTGTATGTGTGTGGGGTATGGGAGGGGGAGGGGGTAGAGGTTGGGGAGGGCTCTATTCATGTGTACATTTTGAGCTCTGGTTTATCTAATTTGAGAATTCTGCAAACCTGTGTTTGATTTAGGTATTTATCTTTGCAGGTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTTGTAAGCCATCTTGAGTTCTTTGTCTTCTCTTTTGTCTTTCATATCTGCATTTTGTCAAGGCAATGAAGAACTCAGATCTATCTTTTAGCTGCCATCAGTGTTTCAGATCTTCCCTCTGTGTTTCATTGTACTTTCTGGATTTTGTTCTGCCTTTTTCTTCTCCTGCCACCTCTGTCAAATTTCTCATGTTCTTTTGTTTTGAATGTTGGTTTGTTTCCTTTCTTTAGGTTGTTCCATCTGTAGGACTTAATACTCATAATTATGGAGATTTTCAGTCTATTTGATACAATGTAAGCAAGTGGAGGGCAAATCCTGTGTTTGAACTTAACAACTTAATAGGTTCAAGTTTCTTAGCTAGCGTATAACCATAGATTTTGGATCAGATTTTGAAAATTTATCTTTTTCAAGTATTTGTTTGGCCATGGTATTTTGTTCATATATTAAAAATCTGACCTTGAAATATTTTGAAGTTCCCAAAACTTCAAATTTTTTCCAAGTATATAATGTATGTCCTAACATAACTTCAAGTTCCAAAAACTACCACTTCAAAACTCAATTTTTCAAGATGCAACTTCAAAATCTATGACCAAACTTTAGCTTAGTTCTTTGGAAATGTAGGTTCAGAATTTGACTAGACTACCTTTTGTTTTTTCACATACATATCTACTATTTACACTGAAGACGAATGGTTCTAATGAATGGACTCCCAACACTCTATGTCCACCTTTGAGAACATTTGGATGATAAACTTGATTTGGTGGTGCAGGATTCCTGTCAGAAAAATCACATCTTTTCTTTTTAATCTAGAAGTAATCAATTTAGGTGTTTTTAGCCATACGTTAGCTGCCCAAAGTAATTGGAAGATTTTGAGTGTTCAGTACCAATTCCAGCTGAAAAATGGATTTGATAGAGAATTATATTGTCTCTCGCATCATCATGTAGCACAATGTTGTTTTGAATAAAGAAGATTTCAACACGGTACTGGATTCTGTAACTACTTCTTAATTTATAGAATGGCAAATGAGATTGGTGATGTCTATTTTTCATGAATCAGATGATACATCTCAACAACCTAATATGTGAATGGGTTTAATACTTTTGCTGTTGTAACATGTAAGTTTTCATTTGAAGGCATCTGGTATATAATCCTTTGTTTTCTCCAGATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATGCATCTGGAAAAAGCAACAAAGGAGCTGAACCAGCTGCAGATCACAATGAAACTGAACAGAAAAT</genome_strand>
        <mrna_strand>GTTGAATACAGTAAAAAACTGATCTTTTTTG-TTTTTCCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGATAGGAATAGAGTGAAAAATCAAATCTTTTTTCTCCCCTCTTGCATTTTTATAGGCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTTCAG............................................................................................................................................................GTGGTAGCTGTTGCTGTATTTCTGGCATTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGCTTCAGTATATTGTGATGGGGCTTTATACTCCTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAAATCCAAGAAGTATCTTACGAAGCTAGACCACAAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGTGAGACAAATTCGTCTATTCAAGATGCTAATGCTGCATCGATTGGGGAAAATGCATCTGGGAAAAGCAATAAAGGAGCTGAACCAGCTGCAGATCACAATGAAACTGAACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542833" ref_strand="+" ref_description="SGN-E542833 [TUS-64-F10]">
      <seq>agacatgaggagtcttctcagcaacagttgagtgaagatggcatgttctactgcagtttgtgtgaagtagaggtatttaaatacagcaagcattgcagagtatgtgacaagtgcgtcgatcagtttgaccatcattgcaggtggataaagaactgtatagggaaaaggaactatcgcaagttctttgcgctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgtactaatctgctgctttatcgagaagaagaaattttctgcggaaatcacctccaaattaggaagcagtttctccattgttccttttgttattgtagtggctgtctgtaccatcttggccatgatagcaaccctgccactagctcaacttttctcctttcacatacttctcataaagaagggaattagcccctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaattccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1837" stop="4615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2137" g_stop="2208" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="141" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2891" g_stop="2962" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="213" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="342" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="423" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4173" g_stop="4315" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="566" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E542833" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2137" e_stop="2208"/>
          <exon e_start="2707" e_stop="2775"/>
          <exon e_start="2891" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAGGTTTGTAACTTCACATCCCATCATTTCTCGTGCTTCCACTTTGAGGCATTATTATGTACTGAATTTAGAATTATTCCGCAAGAAATCTTGTTGTAAAACAAACATATACTCCCGCCGCTTCAATTTGTTTGTTGGTTTTGACTTGGCATGGAGTTAATGAAAGTAAATATGACTTTTGGATCTTGTGGTCTTAAGCTAAAGATATGTTGAATGAACCAAAATGCTCTTTAATCTTGTGGTTTTGAACATGTCATGTCAAAAGTTAGAAATAAATAATTGCCAAAAACAAGACTTCTTTGTTTTGGAACAGACTAAAGAAGGAAGGAAGTCAAACAAATTGAAAGGAAGACAGTATTATTTTTTGTTTTTCACTTGGTATAATAATTCTCAATTTTGCTTAAAACTGATGTTCTTAGCTTGATAGACCTGTTCTTATTATAGTAAGATTGCTATAATGCCTGTTCATATGATATGCTCAATGCTGGATGACACTTGCAGGTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGGGTATTTGACAACCTTGAGTAGTCTGAAATGTCGTATATACATCATAGATGCTCGACTGTGTCGACGTTTATGTAAAAACTTATTAATCTTATTTTTCTGTTTTTGGTTTCTGTAGTGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGC</genome_strand>
        <mrna_strand>AGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG...................................................................................................................TGGATAAAGAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTCCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCCCCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAATTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301914" ref_strand="+" ref_description="SGN-E301914 [cLEW-25-J4]">
      <seq>gacatgaggagtcttcttagcaacagttgagtgaagatggcgtgttctactgcagtttgtgtgaagtagaggtatttaaatacagcaagcattgcagagtatgtgacaagtgcgtcgatcagtttgaccatcattgcaggtggataaacaactgtatagggaaaaggaactatcgcaagttctttgcgctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgtactaatctgctgctttatcgagaagaagaaattttctgcggaaatcacctccaaattaggaagcagtttctccattgttccttttgttattgtagtggctgtctgtaccatcttggccatgatagcaaccctgccactagctcaacttttcttctttcacatacttctcataaagaagggaattagcacctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagcagcatggtgcacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1838" stop="4631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2138" g_stop="2208" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="140" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2891" g_stop="2962" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="212" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="341" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="422" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4173" g_stop="4331" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="581" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E301914" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2138" e_stop="2208"/>
          <exon e_start="2707" e_stop="2775"/>
          <exon e_start="2891" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAGGTTTGTAACTTCACATCCCATCATTTCTCGTGCTTCCACTTTGAGGCATTATTATGTACTGAATTTAGAATTATTCCGCAAGAAATCTTGTTGTAAAACAAACATATACTCCCGCCGCTTCAATTTGTTTGTTGGTTTTGACTTGGCATGGAGTTAATGAAAGTAAATATGACTTTTGGATCTTGTGGTCTTAAGCTAAAGATATGTTGAATGAACCAAAATGCTCTTTAATCTTGTGGTTTTGAACATGTCATGTCAAAAGTTAGAAATAAATAATTGCCAAAAACAAGACTTCTTTGTTTTGGAACAGACTAAAGAAGGAAGGAAGTCAAACAAATTGAAAGGAAGACAGTATTATTTTTTGTTTTTCACTTGGTATAATAATTCTCAATTTTGCTTAAAACTGATGTTCTTAGCTTGATAGACCTGTTCTTATTATAGTAAGATTGCTATAATGCCTGTTCATATGATATGCTCAATGCTGGATGACACTTGCAGGTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGGGTATTTGACAACCTTGAGTAGTCTGAAATGTCGTATATACATCATAGATGCTCGACTGTGTCGACGTTTATGTAAAAACTTATTAATCTTATTTTTCTGTTTTTGGTTTCTGTAGTGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCA</genome_strand>
        <mrna_strand>GACATGAGGAGTCTTCTTAGCAACAGTTGAGTGAAGATGGCGTGTTCTACTGCAGTTTGTGTGAAGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG...................................................................................................................TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735698" ref_strand="+" ref_description="SGN-E735698 [LC02CF06]">
      <seq>aagatggcatgttctactgcagtttgtgtgaagtagaggtatttaaatacagcaagcattgcagagtatgtgacaagtgcgtcgatcagtttgaccatcattgcaggtggataaacaactgtatagggaaaaggaactatcgcaagttctttgcgctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgtactaatctgctgctttatcgagaagaagaaattttctgcggaaatcacctccaaattaggaagcagtttctccattgttccttttgttattgtagtggctgtctgtaccatcttggccatgatagcaaccctgccactagctcaacttttcttctttcacatacttctcataaagaagggaattagcacctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagcagcatggtgcacaccacctcgcctttttgttgaggatcagtatgatgtagttcctcctgatacagtatcggtcagttcacttgggaaaaggtcaatggcggatgaacctatcaagaaaaagaatccagctgccgtgaagattagcccatggacactagcacgattaaatgcggaggatgtttcaaaagctgctgctgaagcaaggaaaaaatcgaaaattcttcagccagtggtgagaaacaaagaaccttacattcttgaaacaaatagcagtttangaagtagcgggcgtcgcatggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1871" stop="5759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2171" g_stop="2208" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="107" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2891" g_stop="2962" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="179" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="308" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="389" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4173" g_stop="4355" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="572" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5196" g_stop="5459" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="836" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E735698" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2171" e_stop="2208"/>
          <exon e_start="2707" e_stop="2775"/>
          <exon e_start="2891" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4355"/>
          <exon e_start="5196" e_stop="5459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAGGTTTGTAACTTCACATCCCATCATTTCTCGTGCTTCCACTTTGAGGCATTATTATGTACTGAATTTAGAATTATTCCGCAAGAAATCTTGTTGTAAAACAAACATATACTCCCGCCGCTTCAATTTGTTTGTTGGTTTTGACTTGGCATGGAGTTAATGAAAGTAAATATGACTTTTGGATCTTGTGGTCTTAAGCTAAAGATATGTTGAATGAACCAAAATGCTCTTTAATCTTGTGGTTTTGAACATGTCATGTCAAAAGTTAGAAATAAATAATTGCCAAAAACAAGACTTCTTTGTTTTGGAACAGACTAAAGAAGGAAGGAAGTCAAACAAATTGAAAGGAAGACAGTATTATTTTTTGTTTTTCACTTGGTATAATAATTCTCAATTTTGCTTAAAACTGATGTTCTTAGCTTGATAGACCTGTTCTTATTATAGTAAGATTGCTATAATGCCTGTTCATATGATATGCTCAATGCTGGATGACACTTGCAGGTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGGGTATTTGACAACCTTGAGTAGTCTGAAATGTCGTATATACATCATAGATGCTCGACTGTGTCGACGTTTATGTAAAAACTTATTAATCTTATTTTTCTGTTTTTGGTTTCTGTAGTGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAGGTATGGTTCAAGAAAAAATCTAATATGACAAGTTCGAGTAATTTAGTAGTACTAAACAGTTGGTTATGGTATCAGCAGACCTTCATTGAGTTTGCAGTGTGAATTTATAATTATCTTTTAGTTGGTTATGGTGTTAGCAGCCCTTTAGTGAGTTTGTGGTGCTTATTTTTGTAAAAGTCTTTCAGTTGGCTTCTCATATTTGAATTTAGTTTCTATTTCACATTTCTTAGCTTCAATTCCATAACTAATCAAAAGAAAAGAAATTCTATTTAGCCCGGTAATGTGGAAAATGCTTTGCCGGCTTGTGGATAGAGGCTCTTTGAAGTGGACTCCTGCAAGAAAGTATGTTCAGTATTTTGGCTCTTCTGTTGTCAAAAGAGATTTTAGAAAATTAAACCTTGTGCTGGTGCCGTGAAGGTTTGCGAATTTTTCCTTGTGAGGACAGTAATCCACTTTGACAGATAGCAAATCCTGAACAGTTCTCTCTTAAGTTGATTCTTTGGTGTGGCTGTTACAACCATTAAGGGATTCTGTGGTTGTGATTGGTATAAGGTAGGACTCATATGGTCTGGTTATTGTTAGAGATTGAGAATGACATAGCATTGAGAGATTTAAGAGGGATTGTTTTTTTATGCTTGACACATTCTGTTTGATGTAATATTTCCAATTCTGTTTTTTTTTCTTTCCTCATATAAAAGCCGAAGGGACTTGAGCAATTTTCCTCTACAGTAGTATCAAGTATATTTCTTGAGCTGGGTAGTGTATGCGTTGATGCTTTTGTATAGGTGAATAGGAAAAGGTTAATGTACTTTCGTTTAACTTTTTGGTGGTTCCCTGCAGTATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCT</genome_strand>
        <mrna_strand>AAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG...................................................................................................................TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTANGAAGTAGCGGGCGTCGCATGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445660" ref_strand="+" ref_description="SGN-E445660 [cSTA-18-I9]">
      <seq>gcaagttctttactctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgttcttatctgctgctttgttgagaagaagaaattttctgcggagatcacctccaaattaggaagcagtttctctattgttccctttgttatcgtagtggctgtctgtaccatcttggccatgatagcaaccctgccacttgctcaactcttcttctttcacatacttctcataaagaagggaattagcacctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtcctcaaatgtctactgttagctcccttactggattaagcagtgcaagttccttcaatactttccatcgagcagcatggtgcacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="2625" stop="4631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2925" g_stop="2962" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="167" r_length="129" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="248" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4173" g_stop="4331" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="407" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E445660" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2925" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCA</genome_strand>
        <mrna_strand>GCAAGTTCTTTACTCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTTCTTATCTGCTGCTTTGTTGAGAAGAAGAAATTTTCTGCGGAGATCACCTCCAAATTAGGAAGCAGTTTCTCTATTGTTCCCTTTGTTATCGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTTGCTCAACTCTTCTTCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCTCAAATGTCTACTGTTAGCTCCCTTACTGGATTAAGCAGTGCAAGTTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300065" ref_strand="+" ref_description="SGN-E300065 [cLEW-11-M19]">
      <seq>tgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagcagcatggtgcacaccacctcgcctttttgttgaggatcagtatgatgtagttcctcctgatacagtatcggtcacttcacttgggaaaaggtcaatggcggatgaacctatcaagaaaaagaatccagctgccgtgaagattagcccatggacactagcacgattaaatgcggaggatgtttcaaaagctgctgctgaagcaaggaaaaaatcgaaaattcttcagtcagtggtgagaaacaaagaaccttacattcttgaaacaaatagcagtttaagaagtagcgggcgtcgcatggtgcctaggcttgataacaatagaaggagagctagtaaacgagttagactccctgcagagttaccctttgaaaccctgagtaaaattcccaatgatatagctcaaaacagcagaagacccatgctaactgagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3887" stop="5889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4187" g_stop="4355" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5196" g_stop="5589" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="563" r_length="394" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E300065" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4187" e_stop="4355"/>
          <exon e_start="5196" e_stop="5589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAGGTATGGTTCAAGAAAAAATCTAATATGACAAGTTCGAGTAATTTAGTAGTACTAAACAGTTGGTTATGGTATCAGCAGACCTTCATTGAGTTTGCAGTGTGAATTTATAATTATCTTTTAGTTGGTTATGGTGTTAGCAGCCCTTTAGTGAGTTTGTGGTGCTTATTTTTGTAAAAGTCTTTCAGTTGGCTTCTCATATTTGAATTTAGTTTCTATTTCACATTTCTTAGCTTCAATTCCATAACTAATCAAAAGAAAAGAAATTCTATTTAGCCCGGTAATGTGGAAAATGCTTTGCCGGCTTGTGGATAGAGGCTCTTTGAAGTGGACTCCTGCAAGAAAGTATGTTCAGTATTTTGGCTCTTCTGTTGTCAAAAGAGATTTTAGAAAATTAAACCTTGTGCTGGTGCCGTGAAGGTTTGCGAATTTTTCCTTGTGAGGACAGTAATCCACTTTGACAGATAGCAAATCCTGAACAGTTCTCTCTTAAGTTGATTCTTTGGTGTGGCTGTTACAACCATTAAGGGATTCTGTGGTTGTGATTGGTATAAGGTAGGACTCATATGGTCTGGTTATTGTTAGAGATTGAGAATGACATAGCATTGAGAGATTTAAGAGGGATTGTTTTTTTATGCTTGACACATTCTGTTTGATGTAATATTTCCAATTCTGTTTTTTTTTCTTTCCTCATATAAAAGCCGAAGGGACTTGAGCAATTTTCCTCTACAGTAGTATCAAGTATATTTCTTGAGCTGGGTAGTGTATGCGTTGATGCTTTTGTATAGGTGAATAGGAAAAGGTTAATGTACTTTCGTTTAACTTTTTGGTGGTTCCCTGCAGTATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCAT</genome_strand>
        <mrna_strand>TGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGTAGTTCCTCCTGATACAGTATCGGTCACTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGTCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAAGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCCTGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471489" ref_strand="+" ref_description="SGN-E471489 [cSTB-24-O1]">
      <seq>agcagcatggtgcacaccacctcgcctttttgttgaggatcagtatgatgtagttcctcctgacactgtatcggtcagttcacttggcaaaaggtcaacggcagaggaacctatcaagaaaaagaatccagctgctgtgaagattagcccatggacgttagcacgattaaatgcagaggatgtttcaaaagctgctgctgaagcaaggaagaaatctaaaattctccagccagtggtgagaaacaaagaaccttacattcttgaaacgaatagcagtttaggaagtagcgggcgtcgcatggtgcctagggttgataacaatagaaggagagctagtaaacgagttcgactccctgcagagttaccctttgaaaccatgagtaaaattcccaatgatatagctcaaaacagtagaaggcccatgataactgagtcatcaagcagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="4013" stop="5900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4313" g_stop="4355" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5196" g_stop="5600" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="448" r_length="405" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E471489" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4313" e_stop="4355"/>
          <exon e_start="5196" e_stop="5600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAGGTATGGTTCAAGAAAAAATCTAATATGACAAGTTCGAGTAATTTAGTAGTACTAAACAGTTGGTTATGGTATCAGCAGACCTTCATTGAGTTTGCAGTGTGAATTTATAATTATCTTTTAGTTGGTTATGGTGTTAGCAGCCCTTTAGTGAGTTTGTGGTGCTTATTTTTGTAAAAGTCTTTCAGTTGGCTTCTCATATTTGAATTTAGTTTCTATTTCACATTTCTTAGCTTCAATTCCATAACTAATCAAAAGAAAAGAAATTCTATTTAGCCCGGTAATGTGGAAAATGCTTTGCCGGCTTGTGGATAGAGGCTCTTTGAAGTGGACTCCTGCAAGAAAGTATGTTCAGTATTTTGGCTCTTCTGTTGTCAAAAGAGATTTTAGAAAATTAAACCTTGTGCTGGTGCCGTGAAGGTTTGCGAATTTTTCCTTGTGAGGACAGTAATCCACTTTGACAGATAGCAAATCCTGAACAGTTCTCTCTTAAGTTGATTCTTTGGTGTGGCTGTTACAACCATTAAGGGATTCTGTGGTTGTGATTGGTATAAGGTAGGACTCATATGGTCTGGTTATTGTTAGAGATTGAGAATGACATAGCATTGAGAGATTTAAGAGGGATTGTTTTTTTATGCTTGACACATTCTGTTTGATGTAATATTTCCAATTCTGTTTTTTTTTCTTTCCTCATATAAAAGCCGAAGGGACTTGAGCAATTTTCCTCTACAGTAGTATCAAGTATATTTCTTGAGCTGGGTAGTGTATGCGTTGATGCTTTTGTATAGGTGAATAGGAAAAGGTTAATGTACTTTCGTTTAACTTTTTGGTGGTTCCCTGCAGTATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTA</genome_strand>
        <mrna_strand>AGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGTAGTTCCTCCTGACACTGTATCGGTCAGTTCACTTGGCAAAAGGTCAACGGCAGAGGAACCTATCAAGAAAAAGAATCCAGCTGCTGTGAAGATTAGCCCATGGACGTTAGCACGATTAAATGCAGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAGAAATCTAAAATTCTCCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACGAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGGTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTCGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGTAGAAGGCCCATGATAACTGAGTCATCAAGCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340551" ref_strand="+" ref_description="SGN-E340551 [cTOF-1-N22]">
      <seq>ttcctcctgatacagtatcggtcagttcacttgggaaaaggtcaatggcggatgaacctatcaagaaaaagaatccagctgccgtgaagattagcccatggacactagcacgattaaatgcggaggatgtttcaaaagctgctgctgaagcaaggaaaaaatcgaaaattcttcagtcagtggtgagaaacaaagaaccttacattcttgaaacaaatagcagtttaggaagtagcgggcgtcgcatggtgcctaggcttgataacaatagaaggagagctagtaaacgagttagactccctgcagagttaccctttgaaaccatgagtaaaattcccaatgatatagctcaaaacagcagaagacccatgctaactgagtcatcaagcagtttagctccccttcagcttgaagcacggagtgatttccgaacaacccgaggactgtccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="4906" stop="6239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5206" g_stop="5939" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E340551" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5206" e_stop="5939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTC</genome_strand>
        <mrna_strand>TTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGTCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736434" ref_strand="+" ref_description="SGN-E736434 [LC05DA07]">
      <seq>cgctcaaaacagcagaagacccatgctaactgagtcatcaagcagtttagctccccttcagcttgaagcacggagtgatttccgaacaacccgaggactgtccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaacccaggctaacatcaggaagcattaagcctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttgacatttcttaatttgttgatgatgtttgtccagtagtatataccatcaacttggtctgttccattgtccattgagttcaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaacattatgtctattctcttgtcctcaaaatgcagagcattcaatgatcagttcttgctgccatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5253" stop="6544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5552" g_stop="6251" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E736434" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5552" e_stop="6251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAGAA</genome_strand>
        <mrna_strand>CGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542832" ref_strand="+" ref_description="SGN-E542832 [TUS-64-F10](-)">
      <seq>cagcagaagacccatgctaactgagtcatcaagcagtttagctccctttcagcttgaagcacggagtgatttccgaacaacccgaggactgtccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaacccaggctaacatcaggaagcattaagcctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttgacatttcttaatttgttgatgatgtttgtccagtagtatataccatcaacttggtctgttccattgtccattgagttcaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaacattatgtctatctcttgtcctcaaaaaaaaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5261" stop="6508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5561" g_stop="6221" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E542832" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5561" e_stop="6221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCA</genome_strand>
        <mrna_strand>CAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCTTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTA-TCTCTTGTCCTCAAAAAAAAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351602" ref_strand="+" ref_description="SGN-E351602 [cTOS-12-F8]">
      <seq>tccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaacccaggctaacatcaggaagcattaagcctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttgacatttcttaatttgttgatgatgtttgtccagtagtatataccatcaacttggtctgttccattgtccattgagttcaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaacattatgtctattctcttgtcctcaaaatgcagagcattcaatgatcagttcttgctgccatcacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5352" stop="6548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5652" g_stop="6249" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E351602" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5652" e_stop="6249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAG</genome_strand>
        <mrna_strand>TCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401713" ref_strand="+" ref_description="SGN-E401713 [PPC-5-G19]">
      <seq>ctggaatgactcttcagaaggacactccattatctagatcgactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggctctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaagccaggctaacatcaggaagcattgaacctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttaacatttcttaatttgttgatgatgtttgtccagtagtatataccttcaacttggcctgttccattgtccattgagttcaaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaaaactttctattctcttgtcctcaaatgcagcattcaatgatcacttcttgctgccatcacttagatgtggatttctacttaacaatttttttgggagtgccttcaatgttctaatgttgggatctcttgcttgccttactattcttgatacaatgactacttaaatgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5476" stop="6616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5776" g_stop="6309" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E401713" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5776" e_stop="6309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTC-AATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAGAAGTGGGTTTCTACTTTAACTA-GTTTTTGGG-GTGCCTTCACTGTTCTAATGTTGCCATCT</genome_strand>
        <mrna_strand>CTGGAATGACTCTTCAGAAGGACACTCCATTATCTAGATCGACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGCTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAAGCCAGGCTAACATCAGGAAGCATTGAACCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTAACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCTTCAACTTGGCCTGTTCCATTGTCCATTGAGTTCAAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAAAACT-T-TCTATTCTCTTGTCCTC-AAATGC--AGCATTCAATGATCACTTCTTGCTGCCATCACTTAGATGTGGATTTCTAC-TTAACAATTTTTTTGGGAGTGCCTTCAATGTTCTAATGTTGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432497" ref_strand="+" ref_description="SGN-E432497 [STM-57-K7]">
      <seq>ctggaatgactcttcagaaggacactccattatctagatcgactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggctctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaagccaggctaacatcaggaagcattgaacctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttaacatttcttaatttgttgatgatgtttgtccagtagtatataccttcaacttggcctgttccattgtccattgagttcaaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaaaactttctattctcttgtcctcaaatgcagcattcaatgatcacttcttgctgccatcacttagatgtggatttctacttaacaatttttttgggagtgccttcaatgttctaatgttgggatctcttgcttgccttactattcttgatacaatgactacttaaatgtttgccagaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5476" stop="6616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5776" g_stop="6309" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E432497" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5776" e_stop="6309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTC-AATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAGAAGTGGGTTTCTACTTTAACTA-GTTTTTGGG-GTGCCTTCACTGTTCTAATGTTGCCATCT</genome_strand>
        <mrna_strand>CTGGAATGACTCTTCAGAAGGACACTCCATTATCTAGATCGACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGCTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAAGCCAGGCTAACATCAGGAAGCATTGAACCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTAACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCTTCAACTTGGCCTGTTCCATTGTCCATTGAGTTCAAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAAAACT-T-TCTATTCTCTTGTCCTC-AAATGC--AGCATTCAATGATCACTTCTTGCTGCCATCACTTAGATGTGGATTTCTAC-TTAACAATTTTTTTGGGAGTGCCTTCAATGTTCTAATGTTGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716476" ref_strand="+" ref_description="SGN-E716476 [FB17AF05]">
      <seq>gtggtgttgcaaaggaggtagagatgaaaggttctaatggatttgagcagctggttgaacctcttcgacaccatcgaggtgtaatcacttttggattttcaggaaagatgatacagagaacactctgtgctaatggtctaaccattccttgtttgaatgctgaaactctcaaggatgctgtgaggttggcaaggagtatagcacaacgtggcgatgccattgtactgagtcctggttgtgctagctttgacgagttcagaaatttcgagcaaagaggaaggatctttcaagagcttgctatctcttcagagtgactgaccatctcttccatgttttgttggtcactcgagatggactattttcgcgaactttgctagtgtgagttgattcagatgccaaaaattgtaacttcaatccttgttgaatatttgaaatatgaagttagtgacttactgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7322" stop="6265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7022" g_stop="6568" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="469"/>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E716476" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7022" e_stop="6568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGTTGCAAAGGAGGTAGAGATGAAAGGTTCTAATGGATTTGAGCAGGTGGTTGAACCTCTTCGACACCATCGAGGTGTAATCACTTTTGGATTTTCAGGAAAGATGATACAGAGAACACTCTGTGCTAATGGTCTAACCATTCCTTGTTTGAATGCTGAAACTCTCAAGGATGCTGTGAGGTTGGCAAGGAGTATAGCACAACGTGGCGATGCCATTGTACTGAGTCCTGGTTGTGCTAGCTTTGACGAGTTCAGAAATTTCGAGCAAAGAGGAAGGATCTTTCAAGAGCTTGCTATCTCTTCAGAGTGACTGACCATCTCTTCCATGTTTTGTTGGTCACTCGAGATGGACTATTTTCGCGAACTTTGCTAGTGCGAGTTGATTCAGATGCCAAAAATTGTAACTTCAATCCTTGTTGAATATTTGAAATATGAAGTTAGTGACTTACTG</genome_strand>
        <mrna_strand>GTGGTGTTGCAAAGGAGGTAGAGATGAAAGGTTCTAATGGATTTGAGCAGCTGGTTGAACCTCTTCGACACCATCGAGGTGTAATCACTTTTGGATTTTCAGGAAAGATGATACAGAGAACACTCTGTGCTAATGGTCTAACCATTCCTTGTTTGAATGCTGAAACTCTCAAGGATGCTGTGAGGTTGGCAAGGAGTATAGCACAACGTGGCGATGCCATTGTACTGAGTCCTGGTTGTGCTAGCTTTGACGAGTTCAGAAATTTCGAGCAAAGAGGAAGGATCTTTCAAGAGCTTGCTATCTCTTCAGAGTGACTGACCATCTCTTCCATGTTTTGTTGGTCACTCGAGATGGACTATTTTCGCGAACTTTGCTAGTGTGAGTTGATTCAGATGCCAAAAATTGTAACTTCAATCCTTGTTGAATATTTGAAATATGAAGTTAGTGACTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590271" ref_strand="+" ref_description="SGN-E590271 [43863]">
      <seq>ttgtctcagagttagattttgctgcgcaagttattccgaggttgtactaaggttttagctgttacaggaactaatgggaggtctactgttaccacatttgcaggacagatacttaatcatttgggtttggagacgtttgttggtggtaaccttggagttccactctcagaagctggttttcattcgtctaaccggagacctttagaggtggctgtggtggaggtgagtagttatcagctggaaatcccaccgaaatacttttgtccttcggttgctgtgatcctaaatcttactcctgatcatcttngaacgacaccaaacgatgaagaactatgctgcaatcaagtgtcgtatcttttctcacatgagagggaataaaattggtattcttccacttggaaatccatatcttgatgaagcagttatggatcacgcggatggtgttagtcttgcttggattggaggttcccctggtgtgaacgttgatgtggaggcgaagattgctgagttaaagcttcctacaataggctgtgtttcacaattacaattgagtgagctgaatgcagttgggaagcacaattacaccaatgctgcagtggctgcattatcagttcttgggttggatattgagatcaaaggctgaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8126" stop="6884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7829" g_stop="7184" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E590271" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7829" e_stop="7184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGA-GTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCTGACCGGAGATCTTTAGAGGTGGCAGTGGTGGAGGTGAGTAGTTATCAGCTGGAAATCCCACCGAAATACTTTTGTCCTTCGGTTGCTGTGATACTAAATCTTACTCCTGATCATCTT-GAACGACACCACACGATGAAAAACTATGCTGCAATCAAGTGTCGTATCTTTTCTCAGATGAGAGGGAAGAAAATTGGTGTTGTTCCACTTGGAAATCCATATCTGGATGAAGCAGTTATGGATCATGCGGATGGCGTTAGTCTTGCTTGGATTGGAGGTTCTCCTGGTGTGAACGTTGATGTGGAGGCGAAGATTGCTGAGTTAAAGCTTCCTACAATAGACTGTCTTTCACAATTACAATTGAGTGAGCTGAAGGCAGTTGGGAAGCACAATTACACCAATGCTGCAGTGGCTGCATTATCAGTTCTTGGGTTGGATATTGAGATCAAA-GCTGAAGCTTT</genome_strand>
        <mrna_strand>TTGTCTCAGAGTTAGATTTTGCTGCGCAAGTTATTCCGAGGTTGTACTAAGGTTTTAGCTGTTACAGGAACTAATGGGAGGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTGGAGACGTTTGTTGGTGGTAACCTTGGAGTTCCACTCTCAGAAGCTGGTTTTCATTCGTCTAACCGGAGACCTTTAGAGGTGGCTGTGGTGGAGGTGAGTAGTTATCAGCTGGAAATCCCACCGAAATACTTTTGTCCTTCGGTTGCTGTGATCCTAAATCTTACTCCTGATCATCTTNGAACGACACCAAACGATGAAGAACTATGCTGCAATCAAGTGTCGTATCTTTTCTCACATGAGAGGGAATAAAATTGGTATTCTTCCACTTGGAAATCCATATCTTGATGAAGCAGTTATGGATCACGCGGATGGTGTTAGTCTTGCTTGGATTGGAGGTTCCCCTGGTGTGAACGTTGATGTGGAGGCGAAGATTGCTGAGTTAAAGCTTCCTACAATAGGCTGTGTTTCACAATTACAATTGAGTGAGCTGAATGCAGTTGGGAAGCACAATTACACCAATGCTGCAGTGGCTGCATTATCAGTTCTTGGGTTGGATATTGAGATCAAAGGCTGAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697898" ref_strand="+" ref_description="SGN-E697898 [FA04CE08]">
      <seq>cccaatttcacagccatcatcttcttccctcactccaaattcttcaatctatcagattaattgaactcaaaatgcttaaagcttcaagctttaaagtgagctcgaagcttgttaactcacatacaaaaattcaatcctgctaccttgaacaagacctgaagggacaaaaagttgctatagttggccttggaaaatcaggttctgctgctacaaagcttgctcttgctagaggtgcttcagttacagccattgatcaaaatgagatctcagaatcaacatttcacataaataatggtttattagatctgaaaaatgcggatttgaagacattttttggtaattttgatgataagattctgaaagaggcggatgtagttgtcgtttctcctggagttccactggaaagatatggaattcaatcaatgatatgttcggggaaggaagtactctcagagttagattttgctgcgcaaattattccgagttatactaaggttttagcagttactggaactaatgggaagtctactgttaccacatttgcaggacagatacttaatcatttgggtttcgagacgtttgttggtggcaaccttggagttccactctcagatgctgtttttcattcacctgaccggagatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8573" stop="7327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8273" g_stop="7627" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E697898" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8273" e_stop="7627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTCACAGCCATCATCTTCTTCCCTTAGTCCAAATTCTTCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGATGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCTGACCGGAGATCTTTA</genome_strand>
        <mrna_strand>CCCAATTTCACAGCCATCATCTTCTTCCCTCACTCCAAATTCTTCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGATGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCACCTGACCGGAGATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447737" ref_strand="+" ref_description="SGN-E447737 [cSTS-1-O23]">
      <seq>agaacaaattcttcaatctatcagactaattgaactcaaatacgactcgaatcacttgttaattttacctgtaccagttccattagcggaaatgcttaaaccttcaagcttgaaagtgagctccaagctcgttaactcacatacaaaatttcaatccttctaccctgaacaagaccttaagggacaaaaagtagctataattggccttggaaaatcaggctcaagtgctacaaagcttgctcttgctagaggtgcttcagttatagccattgatcaaaatgagaactcaggatcaacatttaacattaataatggtttcttagatctgaaaaatgctgatttgaagacattttttggtaattttgatcataaggttctgaaagaggcggantattgttgtcgtttctcctggaattccactggaaaagtatggaattcaatcaatgatatgttcggggaaggaagtactctcagagttagattttgctgcgcaagttattccgagttgtactaaggttttagctgttacaggaactaatgggaagtctactgttaccacatttgcaggacagatacttaatcatttgggtttcgagacgtttgttggtggtaacctttggagttccactctcagaagctggttttcattcgtctaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13359" stop="7338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13059" g_stop="12994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12993" i_stop="8231" i_length="4763">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8230" g_stop="7638" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="658" r_length="593" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E447737" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13059" e_stop="12994"/>
          <exon e_start="8230" e_stop="7638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTGGAGAGCGGAGACAAGTTCACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGATGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGCGGTAGTACTATTACCATTGGTATCAAGATATGCATCTTCGAGTGATCAATTGTTTAGTTACTCTGATCTCCAAGGATAATTTTTCACCATTCAAGTCCGTGCACGACATATACAACTCATTGTTACCCTAAGATACTCAAATGAAAACCTATTTTTGAAATAACGAACAAGTAAAAAAGAACGCACTTACATATTCTACTACCCGTTCCTCCATATCAACCTCGTGTGGTGAATTACTCTTCCTTTAATAGTCATGATACATTTTCGCTTCATGGGAAAAAGGAAATCTCCACCCCAAGTGTGGTTAAAGGATTAAGATATCTATATTCTTAACCAAAACTTTATGGTTCGAATTTTGTAAGAGGGAAAAGGGTGTGATATACCCCTTAACTTTGTCATTTGGAGCTAATATACCCCTTGTTATGAAAGTGGCTCATATATATACCCCTACATATAAACAAATGGGTTACATATACCCTTTTCCTCTAACGGAAATGAAAAAAAAAAATTTCATCTAACTTTTTATTACTTTTTTCTACAATATATAATCCCATATGAGTAACTATAATCCTCGCCAAACATTTTTTTTTTTGACTTTTTTTTATTTCAATGACTAATTTAGAATTATTATTTTGATAATCAAATTTATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTTCTTCAAATACAAAAATCAAATTACAATATAGACAAAAAATAGTTTAAATTTTTTTTCTTTAAACAAAGGAATGAAAGAAAAAATAAAATAAGAATTCTAATAAAAAAAGTCAAAAAATAATTTATGTATTAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTATATAATTTTTAAAAAAAATTAAAAGTAATAAATATACATTTAAAACTAATTTTTTTAACTTCCGTTAAATGAAGGGTACATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTTAGGTCATATATGAGCCACTTTCATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCATTTTCTCTTTGAAAGATACAAAATATCCTAATGCAAGGCCCTTTCTCCGTTAGTAGGGCCTCATGCGGCATAATTAGTCAAAGCAAAGGCTCCATTTCTGACATTGATACGACATCATTTTTGAAGTGTTTGAGCAACATAGCTGATAAGAATTACTACTGCAAAAGATGCACAAAGAGTAAAAGGTGATACGGATATACATATCGAATTCGTAACCTTCATTTTCCAATTCACAACGATCTTCTTCTTCTTCATCATCGATCTTACTAATCATCATCCCGATTATGATCTCAGTATTTCCACTATCGGACTTGATCAAATGAAGAAACTTTCAATCCCACTATAAAAGGAAAAAAAAATTGATTGTTTCTTGAGCTAAATAGTCAATGAAAAGGCTTCACCTGGAACAGTTTCTTTCATTTTCCATTTCACAGCATTCATCTTCTTCTTCTTTCATCGTTGATTGTCATGCATTATCCATCTCCAATGTCAACTGAATTTGATCATCTATGAACCGATATCAAAAAATCATTAGATCACATATACAACGCTAATTCTGATCACTTCAATGTCCTTAAAATCCTTTTCCTCTTGCCTATCTCTCCCTCTCTTATTTTATGTCCTTGTTCCGCCTTGCTCTCTTTCATCCAGATTTCTTCGCTTCCACTCAATCACAATCCCGTCTTTTCTTTCCCAACTTCGAAGCTATTGTATTACTAGTCTACGCTCTGTTTCTCGCCCTGTTTTTCCTCTGTGTCGTAGCCACGATAGATCCATCACCTTCATTTCATCTATTAAATCCATCAGAAATTCCTTTTTCCCTCTTCTCTCCACTTTTATCATTTCTCAAACCATTTTCATTTCAATCATTCACGTTTTCGCCCTAGTTGTGCTTCTCTTATCCCAAATTCTCCAATCTCTCGGATTAATTGAATTCAAATCCGACTAAAATTGTTTGTTATTTTCGCGTTTATTGTGGTGTTACCGATCCTGCTATGGCTACAGGTAAACTGGTCATTAGCTTATGTGATAGCAATGGTTGAATCAAAATCAGGTTTCGAAACACTGAGGAGATGTAGTGGTTATTTGATAAAAGTGAAGAAATCAGTAGCTTTTCGAATACATTTAAATTTCGGGCTTATGGTGGGAGGAATGGTGATTGGTTCTAACGTGTTTTTAGCCAGTACTATGCTGTATGGTCTAGTCAAATCTGGTTTTCCGATGGTAATTATACGAACTATATAGATCAAAAATTATTTTTATCATATATAAATATTGAACATTCTTAATGAAATTTCTTGTTTCGTCACAGGTAAGGGGGTACTATGATGTGGTGGGTACTGGCATCGTCTGGGATGAGAGAGTTACGTGCTTCTGTATTTGTATTGCAACGACTTTAATGGAGGAAAATTAACCTTGGAGGGAATCGAAGGCAAGTTTTCAGACGAATTTGTATATTTGCCCTTAGACGATGAGAAGAATCATGCCATTGTGTAATTTATGGTTATATGAAAAATCAACTTCATTTGTTTATATATGCAAAGATTAATGGTGATATATTGTTGTGAGGTAATGAATAAGAGAATCCCATGTTCATAATACATGAATTAGTTATTGAGCACTTTTGACATTAAAAATTTAGAGCTTGTTTCGATTTGTATAATATATAAAAAGGGTCTGATATACTCCTCAACTTTGTCATTTGGAGCTTATATACCCCTCGTTATAAAAGTGGCTCATATATGTCCTTACCGTTATACAAACGGCTCATATATACCCTTGTCATTACAAAATGACTCACATATACCCTTCATTTAACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTTTTACTTCTAATTTTTTTAAAAAAATTATTTACTGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTTCATACATAAATTATTTTTTGACTTCTTTTATTTTAATTATTTGAATTTCTTGTTCTTATTTTGTTTTTTTTCTTTTCATTCCTTAGTTTAAAGAATAAAAAATTGAACTATTTTTTGTGTGTATTGTAATTTAATTTCATATTCGAAGAAAAAATTTGGTCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAACAAAAAAAGTCAAAAATAAATAAATTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAATTTATATTAAAATTATTATTTTTTTCATTTCCGTTAGAGGAAAAGGGTATATGTGAGTCATTTGTTTACAAGTAGGGGTATATATGAGTCAGTTTCATAACAAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACTCTTTTTCCATATATAAATATGTTTTTTAATTTTATTTTATCTGATATTTATGTTCTTCCATTTCGAGTGTACACAAGTAGGTATTTGAAATTGTATAAAATTAAACATGTAGACACACACATCTTAGCATAATACATGTAGGATGTCACATACAATACAAAATTGTAAATTAGGACGTTACGTAGAACAAATGTATCTATTTATTCAATTTTACACAAGTTCGTGTCTGTTTATGCACACTGTAAAATTAAAGGACATAAATATTAATTGAAGTCTAATTAAAGGCATATTCGATTGATGATTATGACTTTTAGCTTTGTAGTAATAGCTTAAGTAAACACTTTAACTATTCAAAAACTCGAACAAATAAACACTTTGAATATTACAAGTCATAAGCATGATAGACAAATACTCCTACATGGATTAGTGAACACATATGGATACATATGTTTAGTCGTTCAATTTTATACAAAGTAAAGTGTCTAGCTCAAAATTGGGAAGACATAAATTTTAGTTGAATTCAAATTAAAAGTACGTTTATATATTATGTCTAATTTTTTTTTAAAAAAAATGATAATACGCTGTGTGTACTGTTCTTCATTTTCCCCAATTTCACAGCCATCATCTTCTTCCCTTAGTCCAAATTCTTCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGA-TGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACC-TTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCTGACC</genome_strand>
        <mrna_strand>AGAACAAATTCTTCAATCTATCAGACTAATTGAACTCAAATACGACTCGAATCACTTGTTA-ATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGTACCAGTTCCATT-AGC-GGAAATGCTTAAACCTTCAAGCTTGAAAGTGAGCTCCAAGCTCGTTAACTCACATACAAAATTTCAATCCTTCTACCCTGAACAAGACCTTAAGGGACAAAAAGTAGCTATAATTGGCCTTGGAAAATCAGGCTCAAGTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTATAGCCATTGATCAAAATGAGAACTCAGGATCAACATTTAACATTAATAATGGTTTCTTAGATCTGAAAAATGCTGATTTGAAGACATTTTTTGGTAATTTTGATCATAAGGTTCTGAAAGAGGCGGANTATTGTTGTCGTTTCTCCTGGAATTCCACTGGAAAAGTATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAGTTATTCCGAGTTGTACTAAGGTTTTAGCTGTTACAGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGTAACCTTTGGAGTTCCACTCTCAGAAGCTGGTTTTCATTCGTCTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422181" ref_strand="+" ref_description="SGN-E422181 [STM-40-E17]">
      <seq>agaacaaattcttcaatctatcagactaattgaactcaaatacgactcgaatcacttgttaattttacctgtaccagttccattagcggaaatgcttaaaccttcaagcttgaaagtgagctccaagctcgttaactcacatacaaaatttcaatccttctaccctgaacaagaccttaagggacaaaaagtagctataattggccttggaaaatcaggctcaagtgctacaaagcttgctcttgctagaggtgcttcagttatagccattgatcaaaatgagaactcaggatcaacatttaacattaataatggtttcttagatctgaaaaatgctgatttgaagacattttttggtaattttgatcataaggttctgaaagaggcggatattgttgtcgtttctcctggaattccactggaaaagtatggaattcaatcaatgatatgttcggggaaggaagtactctcagagttagattttgctgcgcaagttattccgagttgtactaaggttttagctgttacaggaactaatgggaagtctactgttaccacatttgcaggacagatacttaatcatttgggtttcgagacgtttgttggtggtaaccttggagttccactctcagaagctggttttcattcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13359" stop="7342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13059" g_stop="12994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12993" i_stop="8231" i_length="4763">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8230" g_stop="7642" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="652" r_length="587" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E422181" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13059" e_stop="12994"/>
          <exon e_start="8230" e_stop="7642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTGGAGAGCGGAGACAAGTTCACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGATGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGCGGTAGTACTATTACCATTGGTATCAAGATATGCATCTTCGAGTGATCAATTGTTTAGTTACTCTGATCTCCAAGGATAATTTTTCACCATTCAAGTCCGTGCACGACATATACAACTCATTGTTACCCTAAGATACTCAAATGAAAACCTATTTTTGAAATAACGAACAAGTAAAAAAGAACGCACTTACATATTCTACTACCCGTTCCTCCATATCAACCTCGTGTGGTGAATTACTCTTCCTTTAATAGTCATGATACATTTTCGCTTCATGGGAAAAAGGAAATCTCCACCCCAAGTGTGGTTAAAGGATTAAGATATCTATATTCTTAACCAAAACTTTATGGTTCGAATTTTGTAAGAGGGAAAAGGGTGTGATATACCCCTTAACTTTGTCATTTGGAGCTAATATACCCCTTGTTATGAAAGTGGCTCATATATATACCCCTACATATAAACAAATGGGTTACATATACCCTTTTCCTCTAACGGAAATGAAAAAAAAAAATTTCATCTAACTTTTTATTACTTTTTTCTACAATATATAATCCCATATGAGTAACTATAATCCTCGCCAAACATTTTTTTTTTTGACTTTTTTTTATTTCAATGACTAATTTAGAATTATTATTTTGATAATCAAATTTATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTTCTTCAAATACAAAAATCAAATTACAATATAGACAAAAAATAGTTTAAATTTTTTTTCTTTAAACAAAGGAATGAAAGAAAAAATAAAATAAGAATTCTAATAAAAAAAGTCAAAAAATAATTTATGTATTAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTATATAATTTTTAAAAAAAATTAAAAGTAATAAATATACATTTAAAACTAATTTTTTTAACTTCCGTTAAATGAAGGGTACATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTTAGGTCATATATGAGCCACTTTCATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCATTTTCTCTTTGAAAGATACAAAATATCCTAATGCAAGGCCCTTTCTCCGTTAGTAGGGCCTCATGCGGCATAATTAGTCAAAGCAAAGGCTCCATTTCTGACATTGATACGACATCATTTTTGAAGTGTTTGAGCAACATAGCTGATAAGAATTACTACTGCAAAAGATGCACAAAGAGTAAAAGGTGATACGGATATACATATCGAATTCGTAACCTTCATTTTCCAATTCACAACGATCTTCTTCTTCTTCATCATCGATCTTACTAATCATCATCCCGATTATGATCTCAGTATTTCCACTATCGGACTTGATCAAATGAAGAAACTTTCAATCCCACTATAAAAGGAAAAAAAAATTGATTGTTTCTTGAGCTAAATAGTCAATGAAAAGGCTTCACCTGGAACAGTTTCTTTCATTTTCCATTTCACAGCATTCATCTTCTTCTTCTTTCATCGTTGATTGTCATGCATTATCCATCTCCAATGTCAACTGAATTTGATCATCTATGAACCGATATCAAAAAATCATTAGATCACATATACAACGCTAATTCTGATCACTTCAATGTCCTTAAAATCCTTTTCCTCTTGCCTATCTCTCCCTCTCTTATTTTATGTCCTTGTTCCGCCTTGCTCTCTTTCATCCAGATTTCTTCGCTTCCACTCAATCACAATCCCGTCTTTTCTTTCCCAACTTCGAAGCTATTGTATTACTAGTCTACGCTCTGTTTCTCGCCCTGTTTTTCCTCTGTGTCGTAGCCACGATAGATCCATCACCTTCATTTCATCTATTAAATCCATCAGAAATTCCTTTTTCCCTCTTCTCTCCACTTTTATCATTTCTCAAACCATTTTCATTTCAATCATTCACGTTTTCGCCCTAGTTGTGCTTCTCTTATCCCAAATTCTCCAATCTCTCGGATTAATTGAATTCAAATCCGACTAAAATTGTTTGTTATTTTCGCGTTTATTGTGGTGTTACCGATCCTGCTATGGCTACAGGTAAACTGGTCATTAGCTTATGTGATAGCAATGGTTGAATCAAAATCAGGTTTCGAAACACTGAGGAGATGTAGTGGTTATTTGATAAAAGTGAAGAAATCAGTAGCTTTTCGAATACATTTAAATTTCGGGCTTATGGTGGGAGGAATGGTGATTGGTTCTAACGTGTTTTTAGCCAGTACTATGCTGTATGGTCTAGTCAAATCTGGTTTTCCGATGGTAATTATACGAACTATATAGATCAAAAATTATTTTTATCATATATAAATATTGAACATTCTTAATGAAATTTCTTGTTTCGTCACAGGTAAGGGGGTACTATGATGTGGTGGGTACTGGCATCGTCTGGGATGAGAGAGTTACGTGCTTCTGTATTTGTATTGCAACGACTTTAATGGAGGAAAATTAACCTTGGAGGGAATCGAAGGCAAGTTTTCAGACGAATTTGTATATTTGCCCTTAGACGATGAGAAGAATCATGCCATTGTGTAATTTATGGTTATATGAAAAATCAACTTCATTTGTTTATATATGCAAAGATTAATGGTGATATATTGTTGTGAGGTAATGAATAAGAGAATCCCATGTTCATAATACATGAATTAGTTATTGAGCACTTTTGACATTAAAAATTTAGAGCTTGTTTCGATTTGTATAATATATAAAAAGGGTCTGATATACTCCTCAACTTTGTCATTTGGAGCTTATATACCCCTCGTTATAAAAGTGGCTCATATATGTCCTTACCGTTATACAAACGGCTCATATATACCCTTGTCATTACAAAATGACTCACATATACCCTTCATTTAACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTTTTACTTCTAATTTTTTTAAAAAAATTATTTACTGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTTCATACATAAATTATTTTTTGACTTCTTTTATTTTAATTATTTGAATTTCTTGTTCTTATTTTGTTTTTTTTCTTTTCATTCCTTAGTTTAAAGAATAAAAAATTGAACTATTTTTTGTGTGTATTGTAATTTAATTTCATATTCGAAGAAAAAATTTGGTCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAACAAAAAAAGTCAAAAATAAATAAATTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAATTTATATTAAAATTATTATTTTTTTCATTTCCGTTAGAGGAAAAGGGTATATGTGAGTCATTTGTTTACAAGTAGGGGTATATATGAGTCAGTTTCATAACAAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACTCTTTTTCCATATATAAATATGTTTTTTAATTTTATTTTATCTGATATTTATGTTCTTCCATTTCGAGTGTACACAAGTAGGTATTTGAAATTGTATAAAATTAAACATGTAGACACACACATCTTAGCATAATACATGTAGGATGTCACATACAATACAAAATTGTAAATTAGGACGTTACGTAGAACAAATGTATCTATTTATTCAATTTTACACAAGTTCGTGTCTGTTTATGCACACTGTAAAATTAAAGGACATAAATATTAATTGAAGTCTAATTAAAGGCATATTCGATTGATGATTATGACTTTTAGCTTTGTAGTAATAGCTTAAGTAAACACTTTAACTATTCAAAAACTCGAACAAATAAACACTTTGAATATTACAAGTCATAAGCATGATAGACAAATACTCCTACATGGATTAGTGAACACATATGGATACATATGTTTAGTCGTTCAATTTTATACAAAGTAAAGTGTCTAGCTCAAAATTGGGAAGACATAAATTTTAGTTGAATTCAAATTAAAAGTACGTTTATATATTATGTCTAATTTTTTTTTAAAAAAAATGATAATACGCTGTGTGTACTGTTCTTCATTTTCCCCAATTTCACAGCCATCATCTTCTTCCCTTAGTCCAAATTCTTCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGATGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCT</genome_strand>
        <mrna_strand>AGAACAAATTCTTCAATCTATCAGACTAATTGAACTCAAATACGACTCGAATCACTTGTTA-ATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGTACCAGTTCCATT-AGC-GGAAATGCTTAAACCTTCAAGCTTGAAAGTGAGCTCCAAGCTCGTTAACTCACATACAAAATTTCAATCCTTCTACCCTGAACAAGACCTTAAGGGACAAAAAGTAGCTATAATTGGCCTTGGAAAATCAGGCTCAAGTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTATAGCCATTGATCAAAATGAGAACTCAGGATCAACATTTAACATTAATAATGGTTTCTTAGATCTGAAAAATGCTGATTTGAAGACATTTTTTGGTAATTTTGATCATAAGGTTCTGAAAGAGGCGGATATTGTTGTCGTTTCTCCTGGAATTCCACTGGAAAAGTATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAGTTATTCCGAGTTGTACTAAGGTTTTAGCTGTTACAGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGTAACCTTGGAGTTCCACTCTCAGAAGCTGGTTTTCATTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373071" ref_strand="+" ref_description="SGN-E373071 [TUS-32-E19](-)">
      <seq>gatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggtagcttggtggtgatattggcggttgtggcgggatctcttatgatgaattaccatcttctaaagaatgtagctttgtacatgtattgtaaagaacaattcttcaatggtgaaaagttgctatttgagagcggagacaagtttaccggagctaatgagtatgtagacaatgagaaaaaatcatgctattgagtaagtttgtttaatttctctatagattgtgttgttaaatttgggtttttttaatcgcgtggtgcttatttctttcctctcttagagtcgagaatcctttggaaacgatcttttctaaagtaagatctcagtgtatcctagaaaagataatattgttttaaccacatgtggtagtactattaccattggtatcaagatatgcatcttcgagtgatgaattgtttagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13345" stop="12032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13045" g_stop="12332" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="726"/>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E373071" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13045" e_stop="12332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTGGAGAGCGGAGACAAGTTCACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGATGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGCGGTAGTACTATTACCATTGGTATCAAGATATGCATCTTCGAGTGATCAATTGTTTAGTTA</genome_strand>
        <mrna_strand>GATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTTGAGAGCGGAGACAAGTTTACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGGTGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGTGGTAGTACTATTACCATTGGTATCAAGATATGCATCTTCGAGTGATGAATTGTTTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373072" ref_strand="+" ref_description="SGN-E373072 [TUS-32-E19]">
      <seq>cctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggtagcttggtggtgatattggcggttgtggcgggatctcttatgatgaattaccatcttctaaagaatgtagctttgtacatgtattgtaaagaacaattcttcaatggtgaaaagttgctatttgagagcggagacaagtttaccggagctaatgagtatgtagacaatgagaaaaaatcatgctattgagtaagtttgtttaatttctctatagattgtgttgttaaatttgggtttttttaatcgcgtggtgcttatttctttcctctcttagagtcgagaatcctttggaaacgatcttttctaaagtaagatctcagtgtatcctagaaaagataatattgttttaaccacatgtggtagtactattaccattggtatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13362" stop="12066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13062" g_stop="12366" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E373072" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13062" e_stop="12366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTGGAGAGCGGAGACAAGTTCACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGATGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGCGGTAGTACTATTACCATTGGTATCAA</genome_strand>
        <mrna_strand>CCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTTGAGAGCGGAGACAAGTTTACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGGTGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGTGGTAGTACTATTACCATTGGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707498" ref_strand="+" ref_description="SGN-E707498 [FA33AG04]">
      <seq>cgttttcttcttctcacttaactccgatgtctactcctaccgaaaatggtagccaacgggtagagatcctgaaaccaattcaccgcataatgaagtcccaccctcgacatctccatggactttcaattctcttcttcttaccattgttcactctcatcgtatatccttctttccacctcgccctctttcatcccgactacaatttctaccaacttgactctcactaccttcccatttccagtttcgaaattgtcttacccatactatacactctctgtatatccctattttacctctgtgccgtagccactattacacacagcgctgctcaagcattgtgcgataaaccgatcaatcttctttcctctgttaaatctattagaaattccttctttcctcttctctcaacttttatcctctctcataccattctcatttcaattgctctgtttttcgttatagtcgtagttttcctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggtagcttggtggtgatattggcggttgtggcgggatctcttatgatgaattaccatcttctaaagaatgtagctttgtacatgtattgtaaagaacaattcttcaatggtgaaaagttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13834" stop="12328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13534" g_stop="12628" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E707498" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13534" e_stop="12628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATT</genome_strand>
        <mrna_strand>CGTTTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCCCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGCGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701996" ref_strand="+" ref_description="SGN-E701996 [FA17CB01]">
      <seq>ggcagcagctcctgctgaagcaattgtagtggttgtcgtcttcttcttctcacttaactccgatgtctactcctaccgaaaatggtagccaactggtagagatcctgaaaccaattcaccgcataatgaagtcccaccctcgacatctccatggactttcaattctcttcttcttaccattgttcactctcatcgtatatccttctttccacctcgccctctttcatcccgactacaatttctaccaacttgactctcactaccttcccatttccagtttcgaaattgtcttacccatactatacactctctgtatatccctattttacctctgtgccgtagccactattacacacagcgctgctcaagcattgtgcgataaaccgatcaatcttctttcctctgttaaatctattagaaattccttctttcctcttctctcaacttttatcctctctcataccattctcatttcaattgctctgtttttcgttatagtcgtagttttcctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggtagcttggtggtgatattggcggttgtggcgggatctcttatgatgaattaccatcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13870" stop="12391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13570" g_stop="12691" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E701996" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13570" e_stop="12691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCT</genome_strand>
        <mrna_strand>GGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACTGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCCCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGCGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292660" ref_strand="+" ref_description="SGN-E292660 [cLET-11-E6]">
      <seq>cctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggtagcttggtggtgatattggcggttgtggcgggatctcttatgatgaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13362" stop="12399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13062" g_stop="12699" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E292660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13062" e_stop="12699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTAC</genome_strand>
        <mrna_strand>CCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702210" ref_strand="+" ref_description="SGN-E702210 [FA18AD09]">
      <seq>ccaaaaggaaataatacttgtgtactgttttaccttcagttttcacacacatcttgggcagcagctcctgctgaagcaattgtagtggttgtcgtcttcttcttctcacttaactccgatgtctactcctaccgaaaatggtagccaacgggtagagatcctgaaaccaattcaccgcataatgaagtcccaccctcgacatctccatggactttcaattctcttcttcttaccattgttcactctcatcgtatatccttctttccacctcgccctctttcatcccgactacaatttctaccaacttgactctcactaccttcccatttccagtttcgaaattgtcttacccatactatacactctctgtatatccctattttacctctgtgccgtagccactattacacacagcgctgctcaagcattgtgcgataaaccgatcaatcttctttcctctgttaaatctattagaaattccttctttcctcttctctcaacttttatcctctctcataccattctcatttcaattgctctgtttttcgttatagtcgtagttttcctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttatatttgtgttttttctcgttgattgtgattgcaccgattcttctttggctacaggtgaattggttattagcttatgtgatagcagtggttgaatctaagtttggtttcgaagcattgaggagaagtgcgaatttgttaaaggggaagagatggatagcttcgtacacgatgctgtttgacgggcttttaatgggactgttggtggttactcattccattattccagtcgcggtgggtgttgcccgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13926" stop="12450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13626" g_stop="12750" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E702210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13626" e_stop="12750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGGAAATAATACTTGTGTACTGTTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGT</genome_strand>
        <mrna_strand>CCAAAAGGAAATAATACTTGTGTACTGTTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCCCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGCGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGCACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254072" ref_strand="+" ref_description="SGN-E254072 [cLEG-34-D9]">
      <seq>ttttaccttcagttttcacacacatcttgggcagcagctcctgctgaagcaattgtagtggttgtcgtcttcttcttctcacttaactccgatgtctactcctaccgaaaatggtagccaacgggtagagatcctgaaaccaattcaccgcataatgaagtctcaccctcgacatctccatggactttcaattctcttcttcttaccattgttcactctcatcgtatatccttctttccacctcgccctctttcatcccgactacaatttctaccaacttgactctcactaccttcccatttccagtttcgaaattgtcttacccatactatacactctctgtatatccctattttacctctgtgccgtagccactattacacacagtgctgctcaagcattgtgcgataaaccgatcaatcttctttcctctgttaaatctattagaaattccttctttcctcttctctcaacttttatcctctctcataccattctcatttcaattgctctgtttttcgttatagtcgtagttttcctagtccaaattcttcgatctatcggattaattgaactcaaatacgacctgaatcactttttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13899" stop="12697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13599" g_stop="12997" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E254072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13599" e_stop="12997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATA</genome_strand>
        <mrna_strand>TTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCGGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400147" ref_strand="+" ref_description="SGN-E400147 [cSTC-5-G19]">
      <seq>gtcttcttcttcttcttcttctcatttacctctgatgtctacttctacccaaaatcgtagcccatgggtagagatcctgaaatcaatccaccgcataatgaagtctcaccctctacatttccatggactttcaattctcttcctcttacctatcattttcactctcatcatatatccttctttccacctcgctctctttcatcccgactataatttccaccaacttgactcccattaccttccccattccagtttcgaaattgtcctacccatactatacactctctgtctttccctcttttacctctgtgccgtagccacaattacacacagcgctgctcaagcattgtgcgataaaccgatcaaccttctttcctctgttaaatctattagaaattccttctttcctcttctctccacttttatcctttattataccattctcatttcaattgctctgattttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13842" stop="12778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13542" g_stop="13078" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E400147" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13542" e_stop="13078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACC-AT--TGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGT</genome_strand>
        <mrna_strand>GTCTTCTTCTTCTTCTTCTTCTCATTTACCTCTGATGTCTACTTCTACCCAAAATCGTAGCCCATGGGTAGAGATCCTGAAATCAATCCACCGCATAATGAAGTCTCACCCTCTACATTTCCATGGACTTTCAATTCTCTTCCTCTTACCTATCATTTTCACTCTCATCATATATCCTTCTTTCCACCTCGCTCTCTTTCATCCCGACTATAATTTCCACCAACTTGACTCCCATTACCTTCCCCATTCCAGTTTCGAAATTGTCCTACCCATACTATACACTCTCTGTCTTTCCCTCTTTTACCTCTGTGCCGTAGCCACAATTACACACAGCGCTGCTCAAGCATTGTGCGATAAACCGATCAACCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCCACTTTTATCCTTTATTATACCATTCTCATTTCAATTGCTCTGATTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260172" ref_strand="+" ref_description="SGN-E260172 [cLEG-52-J11]">
      <seq>ttttaccttcagttttcacacacatcttgggcagcagctcctgctgaagcaattgtagtggttgtcgtcttcttcttctcacttaactccgatgtctactcctaccgaaaatggtagccaacgggtagagatcctgaaaccaattcaccgcataatgaagtctcaccctcgacatctccatggactttcaattctcttcttcttaccattgttcactctcatcgtatatccttctttccacctcgccctctttcatcccgactacaatttctaccaacttgactctcactaccttcccatttccagtttcgaaattgtcttacccatactatacactctctgtatatccctattttacctctgtgccgtagccactattacacacagtgctgctcaagcattgtgcgataaaccgatcaatcttctttcctctgttaaatctattagaaattccttctttcctcttctctcaacttttatcctctctcataccattctcatttcaattgctctgtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13899" stop="12780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13599" g_stop="13080" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E260172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13599" e_stop="13080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTC</genome_strand>
        <mrna_strand>TTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554121" ref_strand="+" ref_description="SGN-E554121 [cTSC-3-E3]">
      <seq>aaaaagcctggtcatattccagaatgtcaatttagagagctcctcaaatattggaattctgaaaaattcaagaaaatgtctgaaacaaatgcaaagaatcgaaagaaaatgatgaatccacaaactactggcaaaaagagtttcgctttagttcgtaataagctggagaaagataaggagacagtatcatctaaggatctctttgtggttacaagaacaagaaaacctggtcgtttgtacaaggcctcaaatgaagatactactataggctgaaatggaggaaattgaaaaacaaataagcataaatggtgagtatgttgatgcattttcaagcgtcatgggtcctgaacatccgggacgtctaagactatatggcgcaggagttacaaagactactttgaaaaaaaaagttggcaattcggaatcaactttaagtgcaacaactgatggaatgcagcaaatgcaagagaggatgcagaaaatggagaaacagatggaggaacaaaagaaaattgtgcgacaagaagttattgcagatgttattgcacaacttaagcatgcaggattaattgatcctaatatattggcaacattgtcgactccttcaccaagagaatctacttttgtttaaggggctaaacaaggtgatgaaatcgaagaaagggatgaaagcagtagtgaagacttgacataggagctgaagtatatattgatgtaaactttattgatgttctagaaatcatatatttttgaagattgaaaattctatggcatggtgttcaccttttttggattctataaaaagatttgtatattttggatcttgaattctaattaaggtaatgaacatttattctcgttaacgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27475" stop="30635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27775" g_stop="27846" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27847" i_stop="28018" i_length="172">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28019" g_stop="28111" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="165" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28112" i_stop="28204" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28205" g_stop="28304" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="265" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28305" i_stop="28393" i_length="89">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28394" g_stop="28772" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="644" r_length="379" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28773" i_stop="30090" i_length="1318">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30091" g_stop="30264" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="818" r_length="174" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E554121" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27775" e_stop="27846"/>
          <exon e_start="28019" e_stop="28111"/>
          <exon e_start="28205" e_stop="28304"/>
          <exon e_start="28394" e_stop="28772"/>
          <exon e_start="30091" e_stop="30264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTACTCAAATATTAGAATTCTGAAAAATTCAAGGTAAAAATGTAGTTCAGAATATCAATTTTTTTAATAAGTAGCATTTGTATTATATAATGACTAATATTGACAGATTGTTATAAAGGAAAGACAGACTAATATTGACCTCGTCTAGTACACTATATAACACTAATATACCTTCGATTGACATTACTGATTCATTTCTTTGCAGAAAATGTCTGAAACAAATGCAAAGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTGGTGAGTTCTCTGATATATTATTTTTTAATGAAATTTTCTTTTGGATCTCTTCCAATGTGAGTTTAGTTTTTATATATATTTCAATTCGACTAGGAGAAAGATAAGGAGACAGTATCATCTAAGGATATCTTTGTGGTTACAAGAACAAGAAAACCTGGGCGATCGTACAAGGCCTCAAATGAAGATACTACTAGTAAAATTGTATGTGCCTGTCTATTTTAATTTTTTTTGTTGAGATCAATTATTTATTTCATAAGATTGTATTTGTTGGATATACTTTGGTAGGCTAAAATGGAGCAAATTGAAAAACAAATAAGCATAAATGGTGAGTTTGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTGGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGGAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAAATGTTATTGCACAACTTAAGTATGCGGGATTAATTGATCCTAACATATTGGCAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAGGTTGGTGTCGCTAATTCTATGTTTTGATTGGTATTTGTTGTTGCTACTTTCTATAGGATTAGAATGGAATAGTACGCTATTGATCTAAGGAAGTTGGGGAAAAGTTAGGCAGTGGGTCAAGAAGCAGTAAAAAATGTAGCCTGCTCCTCTTTCCCTTGAATTCTTGAAGCACTAGAAATTATTCCTGTGAAACTATCATTGGAAAATCCATATGAAAGGGTCTCAAGTTATTTGCTTAATGGATCACTCATTAGAGGGAAGAAACTGGACTGAAGGGGTTCCCTATGAGAAAACACCTGATTTTGACTTAAAACTGATGGGAAATGATTAACTGAAGTGGTGGTGAAGAAGCTGCCTTGATGATGATTACCAGAGGATAGGATTGTGTCATCTTGTAAAGACTGGAAATTGAGAAAATGCCCATGTGGGTAGCTCTGGAGATCACTTAAAAATGGAATCTTTAAACCATCAGATGATGAAAACAAGTTTGGGATGTCATAATTCACCTCTTGCTGTTTGTCTTGAACTCCACATTCAGAATTGGGAACACCTCTGTTTTCTTGGCTAAATTCTGGACTCTGTTCTTGATCAAATGAATACTGCATTTTTTTGGGATTTAGTTTAGTAGAGTGAAAATTATTAGGGAACTCACCAAGAGCATCAATTGCAGCTTTAGCTTCTTTAATCAGCCAATCAATAGCCTTACTTGGACGGTCATACCCAAGCCTATCTTGCACATCATAGAACTGAATTGCAGTGTTTGGTGAAAGCCTAACTCGTCGATCCTTCGGACCTTTTGCAGTTGAAACCTTACTGTGTCTGTCTTTCCTTCCCGTGGCTCGAATAATTCGGCCTCCATGGCCTTCTATAACATCTGTTTTAGCTCTCTTTGGCTTCATTCTTCTTGTCCCTTTGTTCAATTCTTGTTCGCTTACTGTGAAATTAGCCCATTTTTCTGGCTTTTTGCAGAGTGACTGTGGCATCTGCTGGTTTTGGTAGTGACTTTGAAGGTTTCCAATGTCATTTTCTTCAAAAACTTCCTCTTCCTCCTCCTCTTCTTCTTCTCATCCATCTTCTTCTTCTGATACTTGAAACTGATGATTCATTGGAGGATTCAGATTGGAAGTAATCTATTCTCTCTTCCACCTTTTATCTTTTTAGTGTTGGAAACTTGATTGGCATGTACTTGATTTCCAAGTTTTAGGGTTGAACAATTCTAAAAGCTAATGCCTGCAGGTTGTAACTACATGTGTACTTGTTAATTTCCAAGATTTGAGGTTTCCTAAATTATTTATATTTTTTTTCTGATTGTATGTGGGTGACGAAATCGAAGAAGGCAATGAAAGCAATAGTGAAGACTTAACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATGTTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGAATGCTATAAAATGATTTGTACATTTT</genome_strand>
        <mrna_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG............................................................................................................................................................................AAAATGTCTGAAACAAATGCAAAGAATCGAAAGAAAATGATGAATCCACAAACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG.............................................................................................GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAAGGCCTCAAATGAAGATACTACTA.........................................................................................TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTCGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTGATCCTAATATATTGGCAACATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTTAAGGGGCTAAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGGTGTTCACCTTTTTTGGATTCTATAAAAAGATTTGTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215028" ref_strand="+" ref_description="SGN-E215028 [cLEC-78-M3]">
      <seq>atacttcatcagaaaatggctgtagcttatggaatgaaatcattgaatcaaccagaacaatattcagatctcatgttcgccattttcatgctatttcaatcctattcctcttccctatcattctctctctaattctctatccttctttcgaacttgccatatttcaccccgattatgatttcactagctatgctcaacttcaatttcctcaacttttcgcaatttcaagttccgaaactattctacttgtactgtatgctctgtttttgacattctttttcatctgtggagtaggcactactacatatagcgcggttcaagtgatctatgatagaccgatcaacgtcttttcgtctattaaatctatgagaaattccttcttccctcttctcaccaccttcattgtttcgcaaaccattttcatttcaatcactcttcttttcgccctgattttggtgtttgtagtgcgaattcttcaatctcttgaactaattgagctcggatcaaactcggatcacttgttatttttggttattttctggttgatcgtgattgtaccgattctgatttggctacaagtaaactggtgtttagcttatgtgataacagtagttgaatcgaaaaagggttacgagacactaaggagaagtgcgaagttagtaaagggggagagatgggtagctttgaagattcttatgtattacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40437" stop="39133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40137" g_stop="39433" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E215028" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40137" e_stop="39433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTCATCAGAAAATGGATGTAGCTTATGGAATGAAATCATTGAATCAACCAGAGCAATATTCAGATCTCATGTTCGCCATTTTCATGCTATTTCAATCCTATTCCTCTTCCCTATCATTCTCTCTCTAATTCTCTATCCTTCTTTCGAACTTGCCATATTTCACCCCGATTATCATTTCACTAGCTATGCTCAACTTCAATTTCCTCAACTTTTCGCAATTTCAAGTTTCGAAACTATTCTACTTGTACTGTATGCTCTGTTTTTGACATTCTTTTTCATCTGTGGAGTAGGCACTACTGCATATAGCGCGGTTCAAGTGATCTATGATAGACCGATCAAGGTCTTTTCGTCTATTAAATCTATGAGAAATTCCTTCTTCCCTCTTCTCTCCACTTTCATTGTTTCGCAAACCATTTTCATTTCAATCACTCTTCTTTTCGCCCTGATTTTGGTGTTTGTAGTGCGAATTCTTCAATCTCTTGAACTAATTGAGCTCGGATCAAACTCGGATCACTTGTTATTTTTGGTTATTTTCTGGTTGGTCGTGATTGTACCGATTCTGATTTGGCTACAAGTGAACTGGTGTTTAGCTTATGTGATAACAGTGATTGAATCGAAGAAAGGTTACGAGACACTAAGGAGAAGTGCGAAGTTAGTAAAGGGGGAGAGATGGGTAGCTTTAAAGATACTTATGTATTACG</genome_strand>
        <mrna_strand>ATACTTCATCAGAAAATGGCTGTAGCTTATGGAATGAAATCATTGAATCAACCAGAACAATATTCAGATCTCATGTTCGCCATTTTCATGCTATTTCAATCCTATTCCTCTTCCCTATCATTCTCTCTCTAATTCTCTATCCTTCTTTCGAACTTGCCATATTTCACCCCGATTATGATTTCACTAGCTATGCTCAACTTCAATTTCCTCAACTTTTCGCAATTTCAAGTTCCGAAACTATTCTACTTGTACTGTATGCTCTGTTTTTGACATTCTTTTTCATCTGTGGAGTAGGCACTACTACATATAGCGCGGTTCAAGTGATCTATGATAGACCGATCAACGTCTTTTCGTCTATTAAATCTATGAGAAATTCCTTCTTCCCTCTTCTCACCACCTTCATTGTTTCGCAAACCATTTTCATTTCAATCACTCTTCTTTTCGCCCTGATTTTGGTGTTTGTAGTGCGAATTCTTCAATCTCTTGAACTAATTGAGCTCGGATCAAACTCGGATCACTTGTTATTTTTGGTTATTTTCTGGTTGATCGTGATTGTACCGATTCTGATTTGGCTACAAGTAAACTGGTGTTTAGCTTATGTGATAACAGTAGTTGAATCGAAAAAGGGTTACGAGACACTAAGGAGAAGTGCGAAGTTAGTAAAGGGGGAGAGATGGGTAGCTTTGAAGATTCTTATGTATTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723005" ref_strand="+" ref_description="SGN-E723005 [FC19AB04]">
      <seq>aatgaaatcattgaatcaaccagaacaatattcaaatctcatgtccgccattttcatgctatttcaatcctattcctcttccctatcattctctctctaattctctatccttctttcgaacttgccatatttcaccccgattatgatttcactagctatgctcaacttcaatttcctcaacttttcgcaatttcaagttccgaaactattctacttgaactgtaagctctgtttttgacattctttttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40405" stop="39553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40105" g_stop="39853" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E723005" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40105" e_stop="39853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAATCATTGAATCAACCAGAGCAATATTCAGATCTCATGTTCGCCATTTTCATGCTATTTCAATCCTATTCCTCTTCCCTATCATTCTCTCTCTAATTCTCTATCCTTCTTTCGAACTTGCCATATTTCACCCCGATTATCATTTCACTAGCTATGCTCAACTTCAATTTCCTCAACTTTTCGCAATTTCAAGTTTCGAAACTATTCTACTTGTACTGTATGCTCTGTTTTTGACATTCTTTTTCATCT</genome_strand>
        <mrna_strand>AATGAAATCATTGAATCAACCAGAACAATATTCAAATCTCATGTCCGCCATTTTCATGCTATTTCAATCCTATTCCTCTTCCCTATCATTCTCTCTCTAATTCTCTATCCTTCTTTCGAACTTGCCATATTTCACCCCGATTATGATTTCACTAGCTATGCTCAACTTCAATTTCCTCAACTTTTCGCAATTTCAAGTTCCGAAACTATTCTACTTGAACTGTAAGCTCTGTTTTTGACATTCTTTTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237668" ref_strand="+" ref_description="SGN-E237668 [cLED-19-I14]">
      <seq>atgaacgggatggaattaactgctgatgtcatttgttacactgttttgattgatagtcactgtaaatcagacaacattgatgatgctattcaccttttcactgaaatgattgatagaggtttagaacctgatagtgtgacatacacagctctaatatgtggctattgtaagcaaggacatgttgagatggctaaagaacttgtgaatgatatgtggagaaagggaatacaaccagatagccataccatctcagcactacatcatggaatcataaaggccaaaaagttgcaccttaggcatgacaataactcagcccaaaatcggagactgcaggttatctagtgtagttttggcaaggcacaagtttgttgcatgagcacatactttggtaatactggaaagagaagagttggtgctcctgatgtaactaagccagcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="89241" stop="87904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88941" g_stop="88616" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88615" i_stop="88427" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88426" g_stop="88378" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="375" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88377" i_stop="88270" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.666" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88269" g_stop="88204" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="441" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="SGN-E237668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88941" e_stop="88616"/>
          <exon e_start="88426" e_stop="88378"/>
          <exon e_start="88269" e_stop="88204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACGGGATGGAATTAACTGCTGATGTCATTTGTTACACTGTTTTGATTGATAGTCACTGTAAATCAGACAACATTGATGATGCTATTCACCTTTTCACTGAAATGATTGATAGAGGTTTAGAACCTGATAGTGTGACATACACAGCTCTAATATGTGGCTATTGTAAGCAAGGACATGTTGAGATGGCTAAAGAACTTGTGAATGATATGTGGAGAAAGGGAATACAACCAGATAGCCATACCATCTCAGCACTACATCATGGAATCATAAAGGCCAAAAAGTTGCACCTTAGGCATGACAATAACTCAGCCCAAAATCGGAGGTATGTTCAACACATTACATTTAGTAGAATCGTTGTTAGTTGGTCATTTCCTGCAATATCTCCTTTGCTCTTTTTGTTTTTTTTTTTGTGTGTGTGTGTTTTGGTATCATGCAACAGTTTAAATTCAGCAGTATGAAGCCTTGTTTTGGGCCTAACTGTGGCTTGACAATTATCTGTTTTGATCTTAAGACTGCAGGTTATCTAGTGTAGTTTTGGCAAGGCACAAGTTTGTTGCATGGTAGGGGGTCTTTGTGCTTAAGTGGTTCTGTTTCTCCATTTTTGTGTTGAACAATCACCAAATCATTATTTTGTGCAGGAGATGATAAATATTCATTTGAATGTGAAGAGCACATACTTTGGTAATACTGGAAAGAGAAGAGTTGGTGCTCCTGATGTAACTAAGCCAGCAGCG</genome_strand>
        <mrna_strand>ATGAACGGGATGGAATTAACTGCTGATGTCATTTGTTACACTGTTTTGATTGATAGTCACTGTAAATCAGACAACATTGATGATGCTATTCACCTTTTCACTGAAATGATTGATAGAGGTTTAGAACCTGATAGTGTGACATACACAGCTCTAATATGTGGCTATTGTAAGCAAGGACATGTTGAGATGGCTAAAGAACTTGTGAATGATATGTGGAGAAAGGGAATACAACCAGATAGCCATACCATCTCAGCACTACATCATGGAATCATAAAGGCCAAAAAGTTGCACCTTAGGCATGACAATAACTCAGCCCAAAATCGGAG.............................................................................................................................................................................................ACTGCAGGTTATCTAGTGTAGTTTTGGCAAGGCACAAGTTTGTTGCATG............................................................................................................AGCACATACTTTGGTAATACTGGAAAGAGAAGAGTTGGTGCTCCTGATGTAACTAAGCCAGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358492" ref_strand="+" ref_description="SGN-E358492 [cLHT-35-J9]">
      <seq>ttactctgtggaagggtgacaatcgcaaaaagctcagattttgctgcgaagcttcaatttggacaaaggattgcgatggacactattaaacaagaaaaagtaaggagatttgaggagtttattgatcgccgtctgaaaccagatcttgttcacgcaattgctgaacgggacaaggtctttgaacaacaaaagattttctctgatttaagacgtaatatagagaatttggagaagaacaatgtaactaatctgaagacattggttaatattggctctgaagtatacctgcaagctgatgtcccagatacaacacgcatatttgttgatgttggacttggatttcatgtggagtttacttggtcagaagctctaaattatatatcagcaagggaggagaaactagccaggcaaatagaggaatatacacatctagttgcatcaattaaggcccagatcaagatggtttgtgaagggatccgtgagttgcttcagattccaccagaacgagcttactaaggtgtatacgtcttaaattgctaaagaagaggggatttaccgcgacaagagacccaaaaagtgaaaaacaaaaccaacataatcttctatccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91029" stop="95308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91329" g_stop="91396" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91397" i_stop="92416" i_length="1020">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92417" g_stop="92515" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="167" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92516" i_stop="93068" i_length="553">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.603" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93069" g_stop="93098" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="197" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93099" i_stop="93285" i_length="187">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93286" g_stop="93387" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="299" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93597" g_stop="93704" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94684" g_stop="94738" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="462" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94739" i_stop="94858" i_length="120">
            <donor d_prob="0.840" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94859" g_stop="95008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="612" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E358492" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91329" e_stop="91396"/>
          <exon e_start="92417" e_stop="92515"/>
          <exon e_start="93069" e_stop="93098"/>
          <exon e_start="93286" e_stop="93387"/>
          <exon e_start="93597" e_stop="93704"/>
          <exon e_start="94684" e_stop="94738"/>
          <exon e_start="94859" e_stop="95008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAGGTAACAATGGCTTATTCTTATATTCTCATTACATTGCTATTGAGGCAGCACTACTATTGGTGCTGAGTAAAATTTTTCCCTCTTTTGGTGAAGTATTAGCAGAAAGATAAATACTTTATACAATGGAGGTACGAGTACTTCGAGAGTCTCTCAAGGCTTGGGGATTGCAATAATGGTGTGTGATATCATAAATTATCCATATTTGGTTTAGCAAAGTAATGCCCTATGTAGCATTACAAAGAAAATTAACAAATAGAAAGGATGAATACACAACTGAAGATTAGTTAATCATTTACGCCCCTGTATGTCCGTACTCGGAAATACTGACCATTAGAAAAGAAGTTAAGCTAATATTGGTGGTTCATTGGGTGGAGTGTGGTAGGGCTTTTAACCAAACCAACTAGGTAAAAGAAAGAGAAGAAGAGATTCTAATCGACATGTTACTTGAAACCAATAGTCATGACATCTGAAGCTACATTCTTGAGATAGTGTCTTTTCACAAGTTTTGCTTTGATCAAATCCATCTATATGTAGTATGTAAAGTTGAAATAATTTGCCAATAAATTAAGTGTTGAAGTACATTCTTTACGTTTGTTGTCATTTTATCTAAGTTAAGGGGTGATTTTATTATTTCCTTTCTTTACTTGTAGAAAATGATACGATAAATTATTATATCACCTATTTTTTGATGTTGTGCAAGGCGTGTCATTTTCTTCATTCAGATTTTAGGAAGATTATAGCATTAATACCTGCGGGAAAAAAAAACTTAATATAGATAGATCCTCAATTGGAAAAGGTTCTCGCTTAGTGAAAGAAGGCCATGATAAGAATGCCAAATGGCGTAAAATCTATGATCATATGACATGGCACTTTAAACTCTAATCTATGTGGAAATTAGGGTTCTAACAGGGACTTTTCACTGTCTTCGGATGCTGGAGTCATCTCACGTCTTAGTTTCTTGTAGTCTTATCTTTGATATGATGGTTAAGTTTTTTCTAACATGATTTTATCTTGTAATAGGATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACGGTAGTAATAAATATATCATTCACTTCAGTTTTCCTGAATTCGTTTTCTATTACATATACATTTATTTGTTTTGGGGACTTCTTATCTCATTTACTGTTCAACCCTTTTCCTTGAATGAGAAAGATGTTTTTCAACTAAACACTTGTCTTATTAATGGGAATGGATCTTTGATGACCTTTAGATAAAAGGTCTTTTCAAGAATATTCTCGTTTTGGTGGTTCTAAGAATGTTCTTTCAAAACTTATTTGCCATGTTGTATTAATGGTCCAATTGTGTAGTGGAATAAAAACTAACTAAATGTATTCATGTCCTGGTTATTTTTTGGTCATCGAAATGGGGCTTAAATCCGCATTGTCATACACATAAATTTTAACATTTATATGTGTGAAGAACGGGGACTTCCAAACATTGCATAGGAAGTAATGGAATGATTTACACCCAACATTGCTAAAGTTACCTATGTATGAAAAAAGATGTAATAAGATTTTCTGCACAAAATCTTATGGTGGCCTAACTTTGTTTCATCTTGTTGCGTTCCACTTTATGGCTACAGGGACAAGGTTTTTGAACAACAAAAGATTTTGTATCCTTTTCATGTTATTATATTGTTACATTACCAACATATAGTTAGATCATTTTTTCAGTCTTTCAGACTTTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGTGTAAGTCTTTCTAATCTTTATTTAAATGTTTGTAGAAAATTATTGAATATATAATAGTTAAGTGATGGCTACTTTTTTTTGAATATGTATCGATACTTTTTGCTTCTTTTTTTTCATTTACAATTGAAAATCTGTATCTTGATGATTTCAAATACCTCGGTATTTTCATCCACTGCATATTGATATTTCTTCCTGAGTTGATCTGACAGCCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAGGTATTACTAATCTTTGCTTCTATCAGTAGTGTCTTATTTCCATTTGAGGACTTAAATTAACTAAAGTCATCTTCTGTTCTTAAGATTTGGAAAATAAGTGCAATGATAAATATAGCATTCAGTAAATTGGCCATCTTAAAAGTAGATCAAACACCTCAAGGAGCATTCAATAGGATGTAGAGTTGGGATCTCTTTCTTGCTAATCAGAAGAGATAGGATGTGTTTCATAAATCTAGTTACTGGTAAGTCAGGCACTTGAATAAATGGAGATGAAAAGGTACGCCAGTGTCAAAGGCATGTAGTTAGTAGCATATTTTAATAGCCATCACGCCATTTTCCATGCAATGGACTGAGTCTGGCTAGGTGGAGGAATATGCACCAATTCAGAGTCATAAAAGTTCTCAAAAAACTCAAGCCGTGAAGTTGTGAAGGAAAAGCTAAAAATCTTGTTTATGCAAAAATTGGCTACTCTAATAGAGATTTGTATAGTACTGGTAAAGCTAAAATCTCCTGAACTACCACCTTAATTACGATCCAATGACAGCATAACTCAACTAACAAGTCCAAATTATTCTGCTCAAGCATGTTTTTTGTTTTCCAGTTTGGATAAACTTTAATTAGACTCTGCTATTAATTAAAAGATAGGAAGATCGAATATGAGCATGTGAATATTAATGTCTAATCAGCTTAGATGTTTGTGCTTATTTTGCTCCCCCTTCTCTATTTTCACTTTAAGTTTCTTGGTATTGGAACCAACTAGTTCAGCTCTTGTTTTTTTTCTGGAGTGGATGGAAGTGAATGATGGGTGCGTTTTTGAACCTTTCACATTCAAAAAAGAGGAAAAACCTTCTCCGCATGTTTTCTTTCATTTTTCCATGTTTTGAGTGGAAACACTCTGTTCAACAGTTCAAAAGATATTCTTCTGAGCCATGTTTCTTGCCTTAAACTAAATGTAGATCTTTTGCAATCAAATGTGCAGGCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATGGTATGTGTTTCAATTGTTCACATAATATGAAGTCGTGTGAGAGATAAACCGGACCTTTCTTTTATGCTCTTGATTAAATTACACTTTGATTAATATTTAATTTAAAAAACTCGAATGCAGGTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGTGAAGAACAAAGCCAACATAATCTTCTATCCATTG</genome_strand>
        <mrna_strand>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCACGCAATTGCTGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGTCTTTGAACAACAAAAGATTTT...........................................................................................................................................................................................CTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT.................................................................................................................................................................................................................CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGAGGAATATACACATCTAGTTGCATCAATTAAGGCCCAGATCAAGATG........................................................................................................................GTTTGTGAAGGGATCCGTGAGTTGCTTCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGAGACCCAAAAAGTGAAAAACAAAACCAACATAATCTTCTATCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338562" ref_strand="+" ref_description="SGN-E338562 [cTOE-15-M11]">
      <seq>tgacaatcgcaaaaagctcagattttgctgcgaagcttcaatttggacaaaggattgcgatggacactattaaacaagaaaaagtaaggagatttgaggagtttattgatcgccgtctgaaaccagatcttgttcatgcaattgctgaacgggacaaggtttttgaacaacaaaagattttctctgatttaagacgtaatatagagaatttggagaagaacaatgtaactaatctgaagacattggttaatattggctctgaagtatacctgcaagctgatgtcccagatacaacacgcatatttgttgatgttggacttggatttcatgtggagtttacttggtcagaagctctaaattatatatcagcaagggaggagaaactagccaggcaaatagaggaatatacacgtctagttgcatcaattaaggcccagatcaagatggtttgtgaagggatccgtgagttgctccagattccaccagaacgagcttactaaggtgtatacgtcttaaattgctaaagaagaggggatttaccgcgacaagggacccaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91045" stop="95274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91345" g_stop="91396" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91397" i_stop="92416" i_length="1020">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92417" g_stop="92515" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92516" i_stop="93068" i_length="553">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.603" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93069" g_stop="93098" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="181" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93099" i_stop="93285" i_length="187">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93286" g_stop="93387" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93597" g_stop="93704" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="391" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94684" g_stop="94738" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="446" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94739" i_stop="94858" i_length="120">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94859" g_stop="94974" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="562" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E338562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91345" e_stop="91396"/>
          <exon e_start="92417" e_stop="92515"/>
          <exon e_start="93069" e_stop="93098"/>
          <exon e_start="93286" e_stop="93387"/>
          <exon e_start="93597" e_stop="93704"/>
          <exon e_start="94684" e_stop="94738"/>
          <exon e_start="94859" e_stop="94974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAGGTAACAATGGCTTATTCTTATATTCTCATTACATTGCTATTGAGGCAGCACTACTATTGGTGCTGAGTAAAATTTTTCCCTCTTTTGGTGAAGTATTAGCAGAAAGATAAATACTTTATACAATGGAGGTACGAGTACTTCGAGAGTCTCTCAAGGCTTGGGGATTGCAATAATGGTGTGTGATATCATAAATTATCCATATTTGGTTTAGCAAAGTAATGCCCTATGTAGCATTACAAAGAAAATTAACAAATAGAAAGGATGAATACACAACTGAAGATTAGTTAATCATTTACGCCCCTGTATGTCCGTACTCGGAAATACTGACCATTAGAAAAGAAGTTAAGCTAATATTGGTGGTTCATTGGGTGGAGTGTGGTAGGGCTTTTAACCAAACCAACTAGGTAAAAGAAAGAGAAGAAGAGATTCTAATCGACATGTTACTTGAAACCAATAGTCATGACATCTGAAGCTACATTCTTGAGATAGTGTCTTTTCACAAGTTTTGCTTTGATCAAATCCATCTATATGTAGTATGTAAAGTTGAAATAATTTGCCAATAAATTAAGTGTTGAAGTACATTCTTTACGTTTGTTGTCATTTTATCTAAGTTAAGGGGTGATTTTATTATTTCCTTTCTTTACTTGTAGAAAATGATACGATAAATTATTATATCACCTATTTTTTGATGTTGTGCAAGGCGTGTCATTTTCTTCATTCAGATTTTAGGAAGATTATAGCATTAATACCTGCGGGAAAAAAAAACTTAATATAGATAGATCCTCAATTGGAAAAGGTTCTCGCTTAGTGAAAGAAGGCCATGATAAGAATGCCAAATGGCGTAAAATCTATGATCATATGACATGGCACTTTAAACTCTAATCTATGTGGAAATTAGGGTTCTAACAGGGACTTTTCACTGTCTTCGGATGCTGGAGTCATCTCACGTCTTAGTTTCTTGTAGTCTTATCTTTGATATGATGGTTAAGTTTTTTCTAACATGATTTTATCTTGTAATAGGATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACGGTAGTAATAAATATATCATTCACTTCAGTTTTCCTGAATTCGTTTTCTATTACATATACATTTATTTGTTTTGGGGACTTCTTATCTCATTTACTGTTCAACCCTTTTCCTTGAATGAGAAAGATGTTTTTCAACTAAACACTTGTCTTATTAATGGGAATGGATCTTTGATGACCTTTAGATAAAAGGTCTTTTCAAGAATATTCTCGTTTTGGTGGTTCTAAGAATGTTCTTTCAAAACTTATTTGCCATGTTGTATTAATGGTCCAATTGTGTAGTGGAATAAAAACTAACTAAATGTATTCATGTCCTGGTTATTTTTTGGTCATCGAAATGGGGCTTAAATCCGCATTGTCATACACATAAATTTTAACATTTATATGTGTGAAGAACGGGGACTTCCAAACATTGCATAGGAAGTAATGGAATGATTTACACCCAACATTGCTAAAGTTACCTATGTATGAAAAAAGATGTAATAAGATTTTCTGCACAAAATCTTATGGTGGCCTAACTTTGTTTCATCTTGTTGCGTTCCACTTTATGGCTACAGGGACAAGGTTTTTGAACAACAAAAGATTTTGTATCCTTTTCATGTTATTATATTGTTACATTACCAACATATAGTTAGATCATTTTTTCAGTCTTTCAGACTTTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGTGTAAGTCTTTCTAATCTTTATTTAAATGTTTGTAGAAAATTATTGAATATATAATAGTTAAGTGATGGCTACTTTTTTTTGAATATGTATCGATACTTTTTGCTTCTTTTTTTTCATTTACAATTGAAAATCTGTATCTTGATGATTTCAAATACCTCGGTATTTTCATCCACTGCATATTGATATTTCTTCCTGAGTTGATCTGACAGCCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAGGTATTACTAATCTTTGCTTCTATCAGTAGTGTCTTATTTCCATTTGAGGACTTAAATTAACTAAAGTCATCTTCTGTTCTTAAGATTTGGAAAATAAGTGCAATGATAAATATAGCATTCAGTAAATTGGCCATCTTAAAAGTAGATCAAACACCTCAAGGAGCATTCAATAGGATGTAGAGTTGGGATCTCTTTCTTGCTAATCAGAAGAGATAGGATGTGTTTCATAAATCTAGTTACTGGTAAGTCAGGCACTTGAATAAATGGAGATGAAAAGGTACGCCAGTGTCAAAGGCATGTAGTTAGTAGCATATTTTAATAGCCATCACGCCATTTTCCATGCAATGGACTGAGTCTGGCTAGGTGGAGGAATATGCACCAATTCAGAGTCATAAAAGTTCTCAAAAAACTCAAGCCGTGAAGTTGTGAAGGAAAAGCTAAAAATCTTGTTTATGCAAAAATTGGCTACTCTAATAGAGATTTGTATAGTACTGGTAAAGCTAAAATCTCCTGAACTACCACCTTAATTACGATCCAATGACAGCATAACTCAACTAACAAGTCCAAATTATTCTGCTCAAGCATGTTTTTTGTTTTCCAGTTTGGATAAACTTTAATTAGACTCTGCTATTAATTAAAAGATAGGAAGATCGAATATGAGCATGTGAATATTAATGTCTAATCAGCTTAGATGTTTGTGCTTATTTTGCTCCCCCTTCTCTATTTTCACTTTAAGTTTCTTGGTATTGGAACCAACTAGTTCAGCTCTTGTTTTTTTTCTGGAGTGGATGGAAGTGAATGATGGGTGCGTTTTTGAACCTTTCACATTCAAAAAAGAGGAAAAACCTTCTCCGCATGTTTTCTTTCATTTTTCCATGTTTTGAGTGGAAACACTCTGTTCAACAGTTCAAAAGATATTCTTCTGAGCCATGTTTCTTGCCTTAAACTAAATGTAGATCTTTTGCAATCAAATGTGCAGGCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATGGTATGTGTTTCAATTGTTCACATAATATGAAGTCGTGTGAGAGATAAACCGGACCTTTCTTTTATGCTCTTGATTAAATTACACTTTGATTAATATTTAATTTAAAAAACTCGAATGCAGGTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGT</genome_strand>
        <mrna_strand>TGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGTTTTTGAACAACAAAAGATTTT...........................................................................................................................................................................................CTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT.................................................................................................................................................................................................................CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATG........................................................................................................................GTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354096" ref_strand="+" ref_description="SGN-E354096 [cTOS-16-H1]">
      <seq>tttagtagtagtttgcacttgcaggcatgtgagttgatgaattatttaattacttatatggaaattgacgttggaatgaggtctacatagttttcttaaccatatcttttcttagctctgatttaagacgtaatatagagaatttggagaagaacaatgtaactaatctgaagacattggttaatattggctctgaagtatacctgcaagctgatgtcccagatacaacacgcatatttgttgatgttggacttggatttcatgtggagtttacttggtcagaagctctaaattatatatcagcaagggaggagaaactagccaggcaaatagaggaatatacacgtctagttgcatcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92871" stop="95021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93171" g_stop="93387" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93597" g_stop="93704" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="325" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94684" g_stop="94721" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="363" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E354096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93171" e_stop="93387"/>
          <exon e_start="93597" e_stop="93704"/>
          <exon e_start="94684" e_stop="94721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGTGTAAGTCTTTCTAATCTTTATTTAAATGTTTGTAGAAAATTATTGAATATATAATAGTTAAGTGATGGCTACTTTTTTTTGAATATGTATCGATACTTTTTGCTTCTTTTTTTTCATTTACAATTGAAAATCTGTATCTTGATGATTTCAAATACCTCGGTATTTTCATCCACTGCATATTGATATTTCTTCCTGAGTTGATCTGACAGCCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAGGTATTACTAATCTTTGCTTCTATCAGTAGTGTCTTATTTCCATTTGAGGACTTAAATTAACTAAAGTCATCTTCTGTTCTTAAGATTTGGAAAATAAGTGCAATGATAAATATAGCATTCAGTAAATTGGCCATCTTAAAAGTAGATCAAACACCTCAAGGAGCATTCAATAGGATGTAGAGTTGGGATCTCTTTCTTGCTAATCAGAAGAGATAGGATGTGTTTCATAAATCTAGTTACTGGTAAGTCAGGCACTTGAATAAATGGAGATGAAAAGGTACGCCAGTGTCAAAGGCATGTAGTTAGTAGCATATTTTAATAGCCATCACGCCATTTTCCATGCAATGGACTGAGTCTGGCTAGGTGGAGGAATATGCACCAATTCAGAGTCATAAAAGTTCTCAAAAAACTCAAGCCGTGAAGTTGTGAAGGAAAAGCTAAAAATCTTGTTTATGCAAAAATTGGCTACTCTAATAGAGATTTGTATAGTACTGGTAAAGCTAAAATCTCCTGAACTACCACCTTAATTACGATCCAATGACAGCATAACTCAACTAACAAGTCCAAATTATTCTGCTCAAGCATGTTTTTTGTTTTCCAGTTTGGATAAACTTTAATTAGACTCTGCTATTAATTAAAAGATAGGAAGATCGAATATGAGCATGTGAATATTAATGTCTAATCAGCTTAGATGTTTGTGCTTATTTTGCTCCCCCTTCTCTATTTTCACTTTAAGTTTCTTGGTATTGGAACCAACTAGTTCAGCTCTTGTTTTTTTTCTGGAGTGGATGGAAGTGAATGATGGGTGCGTTTTTGAACCTTTCACATTCAAAAAAGAGGAAAAACCTTCTCCGCATGTTTTCTTTCATTTTTCCATGTTTTGAGTGGAAACACTCTGTTCAACAGTTCAAAAGATATTCTTCTGAGCCATGTTTCTTGCCTTAAACTAAATGTAGATCTTTTGCAATCAAATGTGCAGGCAAATAGAGGAATATACACGTCTAGTTGCATCAATTA</genome_strand>
        <mrna_strand>TTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT.................................................................................................................................................................................................................CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGAGGAATATACACGTCTAGTTGCATCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423291" ref_strand="+" ref_description="SGN-E423291 [STM-41-F20]">
      <seq>atttcggcgccaattccaaatttctgcaaaatctcttcttcttcttcaacgctatacggcaaaattgttccgttcttcttccatccagtgaatagttctcctcctagaggtttttcttgtgccagaaaggtttccatggcttggtgggaaggtctagatgaagctcgtgttcttattgcaaaagagccttctaaggatgggaacaaggtagagcagcttttatctcttcgacatcccaaatctggaaatgcaacatgttacctttgtgttgatggatctcttcaagaacttcactggttcaagcaatctcacgggtcttggttccttggggattatgtatgtgaagatggtcgtttgtatactgcaactccattcgatccagtttttgttctgttacctattttcgaagaagcaagaatgaagaaaaatgatgatccaggaaagtttaggcaagtggatgaaataatttatgttgtaggctatcctggatatcagcatctttcttccattgctgagaactgcatgcaagtggtttgtgatgtcaaagatgtaggaatgacaaagtttttcaggcttaatgatgagaagatgctaaagtggttatgctttgaggtaatacnattaaagaagacattgttgacactggataagaactatgctgctcgagatnagaaagaatattaactgatacagtatctataattggagagtacttgaaggaagagccttggttgaagctcctctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95581" stop="100133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95881" g_stop="95970" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95971" i_stop="96091" i_length="121">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.608" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96092" g_stop="96185" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="184" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96186" i_stop="96912" i_length="727">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.653" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96913" g_stop="96972" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="244" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96973" i_stop="97249" i_length="277">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97250" g_stop="97351" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="346" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97352" i_stop="97732" i_length="381">
            <donor d_prob="0.680" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97733" g_stop="97809" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="423" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97810" i_stop="98181" i_length="372">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98182" g_stop="98305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="547" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98306" i_stop="98607" i_length="302">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98608" g_stop="98672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="612" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98673" i_stop="99422" i_length="750">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99423" g_stop="99492" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="681" r_length="69" r_score="0.943"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99493" i_stop="99765" i_length="273">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99766" g_stop="99833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="749" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E423291" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95881" e_stop="95970"/>
          <exon e_start="96092" e_stop="96185"/>
          <exon e_start="96913" e_stop="96972"/>
          <exon e_start="97250" e_stop="97351"/>
          <exon e_start="97733" e_stop="97809"/>
          <exon e_start="98182" e_stop="98305"/>
          <exon e_start="98608" e_stop="98672"/>
          <exon e_start="99423" e_stop="99492"/>
          <exon e_start="99766" e_stop="99833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGGCGCCAATTCCAAATTTCTGCAAAATCTCTTCTTCTTCTTCAACGCTATTCTGCAAAATTGCTCCTTTCTTCTTCCATCCAGTGGTAAAGTTCCATTCTTTCCTTCAAAAACCCTACACCCATTTATCTCTTCTTGTAGTTTCTAATGCTTTGTATCTTTACTAATCTCACTGTATTATTGTGTTTTTCAAAAACTGATTAGCAGAATTGTTCTCCTCCTAGAGGTTTTTCTTGTGTCAGAAAGAGTTCCATGGCTTGGTGGGAAGGTCTCGATGAAGCTCGTGTTCTTATTGCAAAAGGTACTTCCTTTACTAGACATTTTTTTTTTGTGTTTGTCCTCTAGTTTATGTTGATTACACCTTCATTAGGTTTTATTAGCAGAAAAGGAAGAAACTTTCAATTGGGTATATGGTTCTTTTTTTGTTTGTGAGTGTTCATTTATATCTCTTGGCTTGAGTTTGTGTCTTTTTTCTTACTGCTGTTTGTCTTTTGAGATTAGAGACATAGTATTATGTTTATAACACCTTCATTATGTTTTGTTAGCAAAAAAGGAAGAAACTTTCAATTGGGCACAATGATTCTTGATTGAATAATTACACCACAGGAAATCTGCTTTGCCTGTAATTTGGTGGGCAAATTGAGTTCATTATGTGTGCGATATTTCAATTCTTTGAGTATTTTCAACCATTTGGAATCTGAAGGAGTGTCTCAAGCATGTATGTTACTGCTGCTTAAGGTTCAGTAGCTACATGTAAGCTTCATCCCCAAGGATGGAGATGGATTTGAAGATTTCAAGACTTGTTGGCTCTTCCAGATATGTCGTTAAACTGATACACTTATCATATAGTCGAATCTTGATTATGGAAATAAATAAGTCTTTTCGAAAAAAGAAAGAAAGAAATCATCTCGACATCTCTTGCTGTGTTGCTGGTACATGGGAACAATCATATGTCAATCTCTTAGATACAGCTCTAGAATCTTCTATACACACTTGAATGCAATATCAAGCTCACTTTGACATTGCAGAGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCGCTCCGACATCCAAAATCTGGTAAATCCCTGCACTTTTCATGCAGCTGCTTGTTTGAGATGTCTTCAGTTATGTGTATTTTTGTTTACTTTTTTCCTATGGTTATAATGCTTTCATGGCAGTGGCTTGAGATATTGTTTTTGTGGATGTATCGAAATTGCTATAGGTCATTTTTTGTTAACCACTCTAACCTCTTGCTGATTGCCATACTATCTTGTGGGAACTGGTTTGCCACTATGATTGTATTAATAGTCCAGTAGCATTGATATAATTTTTTAAAAAATTCTTTTTGTGACAGGAAATGCAACATGTTACCTTTGTGTTGATGAATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTTATGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAGGTAAACATTTGTCCGAGCTTGGTCTAAAAAAATTTGATAAATCCGTACTTGCCCTCGTGGTTCATAATTTGTCTTGACGAATCAATCTCTTCAAGGTAATAGTTTACAGGAATACTATATGTTTACGAATGATAAGTGTGTAACCATCTCATCTTAAAGTTTAAGTGGTTAGAGAGCACAGTTTTATTTTATTAAATATATCTTCAACATCTCAATTTGCCTTTCATTATCTTATATTTATCCTCTTGTACTCTTTCTAGAGAAGCCTGTTGGTTATATCTTCTACTCTTCGAATCCGTCAATGCTATTAGTCATGATTTCTAGAGGAATTGTTAGTGCTTTCTTGGTAGTTCTTCTGTACTCATTTATTTCTCAAAACAGATGGTCGTTTGTATACTGCAACTCCAGTCGATCCAGTTTTTGTCCTGTTGCCTATTTTTGATGAAGCAAGAATGAAGGTATTAATTTCTAACTTCTGAGTGATTTATCTCTCTTAAGTTTCCTATATAAACAAACTACTAGCAAAAAGTTTATAGTAGAGAAGTGTAATACTTGAAAGTGTGTATTTCACATGCATTGTTGCTTTATATATTATTTATTGAGAAAAGGAATAGCTTGTAAACTACTTTAATTTGACTGTAAGAACTGTCTACAATATAGGTGACTCTATTACTCTCTTTCTTCTGAATGACTACGTAAGATTCAGATATCTTCTTTCGCTTTTGGCTGGTTGAGTTTCCTTTGCTGAATGCACCATTTGCAAGAGACAACTGTCTGCCACTTGACAAGCTGGTTTCTAATTGCTCTTTTGTTTATTGTGATAAATGCAGAAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATCATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAGGTGATAATATACTGTCATCCTATCTCCAGTTTTCTTTTTGGTCGTATTACGATATATGGCATGACATCTCATATTTTATGGAGTATTCAATAGATATATTATCCATGTATCTGACTTAAAGTTGTTTGGCAAATAAAGTGTAAAGAAAAACATATGAAAATGGTATTGAAATCTAACATGATGTAATTCATAAAACATTTGAAACTATAACATTTACTTTTGGGTTGGTGGTGAATGTCTAATCCAAGTTAATTAATTCTTAATATTGATGTCCATCCCTCTCCCTTGTTTTTTGTCCACAGATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGGTGCTAAAGTGGTTATGCTTGAAGGTCAGACTTCATCCCTCACAAGCCCATGTATTGGGTGGTTTTTTTTGCTCTGAAACAATGTGCTGTGATGATCATGTTCTAGCATTCAGAGTAAAAATCATAACTTTTTGGAAATTAGAAGTTCAAGAGTTCTTGTGATTGACTCTCCGGGATCTGATCTTTCCAATCTGTAAAAAGTATGAAAATCCACTTATAACTTGTTCCAGTTAATGGCCTGTAATAGTAAAGCTTGTAGATGGATCTCCCGTTGGTTATGTCTACATTGAGTTCTGAAGATGGTCCAATGATAAGTCCACATAGTTATATAAGAAATTTGCTTCCACATGATCTGGCTGCCACTCTGATCCACTTTAGTGTAAGTGTACTTAATTATTTGCAATGGTATAACTTTCTACCTGCCCTGTCACTAGGCTTCAGTAACAACTTACAATAACTAAGAGAAACAGCTTTGCACCATAGTGCATGCGTTATCATTTAGCGCGTACTTGGACTTTTTCAAATGGAAATGATGCAACTTGGGTGTAAAATAACTAAGTCATTTATTTCCAAAGGCCAAAGGGAAACCAACCAGAGTCTTACATAAAAGGAACTAATAATCTCTTCTATTTTGAGGTGTTCTTTATATTTTGGTAGCGTCTTGTAAATTCTTCTCTGTTTACAATGGTCTATCCATCTTACAGATTGAGTAGTCTGTCAGACACAATTTTCATTATGTTCATGTCTCTATTTTAACTTTTAACATATTTGTAGGTAATACAATTGAAGAAGACATTGTTGACACTGGATAAGAACTATGCTGCTCGAGATAAGAAAGAAATATGTACGTCTCCTTTTGAATAATGTGTTTGTTAAACTTTTTACCCTTAAAGATTATGATTCTCATAGCCAATTATGGTCCTTCAAAGACATTTTTCGCATCGTGCTTTGTTTGAGAAACTCTTCAAGTATCTTTAATGTATCCTTGGTTTCAAGAACCAGGAAACAAGTTTGTTTGGCCAATTCAGCGCACTTATCATCTTAAATATGTGATTTGCTGTCACGTCCATATGAATGCTAAAAGATTATACTGATTAATGCTTTTTGAATTAAACAGTAACTGATGCAGTATCTATAGTTGGAGAGTACTTGAAGGAAGAGCCTTGGTTGAAGCTCCTCTGCAGC</genome_strand>
        <mrna_strand>ATTTCGGCGCCAATTCCAAATTTCTGCAAAATCTCTTCTTCTTCTTCAACGCTATACGGCAAAATTGTTCCGTTCTTCTTCCATCCAGTG.........................................................................................................................AATAGTTCTCCTCCTAGAGGTTTTTCTTGTGCCAGAAAGGTTTCCATGGCTTGGTGGGAAGGTCTAGATGAAGCTCGTGTTCTTATTGCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCTCTTCGACATCCCAAATCTG.....................................................................................................................................................................................................................................................................................GAAATGCAACATGTTACCTTTGTGTTGATGGATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTCACGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGTTTGTATACTGCAACTCCATTCGATCCAGTTTTTGTTCTGTTACCTATTTTCGAAGAAGCAAGAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................AAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATAATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAG..............................................................................................................................................................................................................................................................................................................ATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGATGCTAAAGTGGTTATGCTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATACNATTAAAGAAGACATTGTTGACACTGGATAAGAACTATGCTGCTCGAGATNAGAAAG-AATAT.................................................................................................................................................................................................................................................................................TAACTGATACAGTATCTATAATTGGAGAGTACTTGAAGGAAGAGCCTTGGTTGAAGCTCCTCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450129" ref_strand="+" ref_description="SGN-E450129 [cSTS-8-O24]">
      <seq>atttcggcgccaattccaaatttctgcaaaatctcttcttcttcttcaacgctatacggcaaaattgttccgttcttcttccatccagtgaatagttctcctcctagaggtttttcttgtgccagaaaggtttccatggcttggtgggaaggtctagatgaagctcgtgttcttattgcaaaagagccttctaaggatgggaacaaggtagagcagcttttatctcttcgacatcccaaatctggaaatgcaacatgttacctttgtgttgatggatctcttcaagaacttcactggttcaagcaatctcacgggtcttggttccttggggattatgtatgtgaagatggtcgtttgtatactgcaactccattcgatccagtttttgttctgttacctattttcgaagaagcaagaatgaagaaaaatgatgatccaggaaagtttaggcaagtggatgaaataatttatgttgtaggctatcctggatatcagcatctttcttccattgctgagaactgcatgcaagtggtttgtgatgtcaaagatgtangaatgacaaagtttttcaggcttaatgatgagaagatgctaaagtggttatgcttgaaggtaatacaattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95581" stop="98979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95881" g_stop="95970" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95971" i_stop="96091" i_length="121">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.608" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96092" g_stop="96185" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="184" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96186" i_stop="96912" i_length="727">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.653" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96913" g_stop="96972" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="244" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96973" i_stop="97249" i_length="277">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97250" g_stop="97351" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="346" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97352" i_stop="97732" i_length="381">
            <donor d_prob="0.680" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97733" g_stop="97809" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="423" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97810" i_stop="98181" i_length="372">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98182" g_stop="98305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="547" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98306" i_stop="98607" i_length="302">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98608" g_stop="98672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="612" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E450129" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95881" e_stop="95970"/>
          <exon e_start="96092" e_stop="96185"/>
          <exon e_start="96913" e_stop="96972"/>
          <exon e_start="97250" e_stop="97351"/>
          <exon e_start="97733" e_stop="97809"/>
          <exon e_start="98182" e_stop="98305"/>
          <exon e_start="98608" e_stop="98672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGGCGCCAATTCCAAATTTCTGCAAAATCTCTTCTTCTTCTTCAACGCTATTCTGCAAAATTGCTCCTTTCTTCTTCCATCCAGTGGTAAAGTTCCATTCTTTCCTTCAAAAACCCTACACCCATTTATCTCTTCTTGTAGTTTCTAATGCTTTGTATCTTTACTAATCTCACTGTATTATTGTGTTTTTCAAAAACTGATTAGCAGAATTGTTCTCCTCCTAGAGGTTTTTCTTGTGTCAGAAAGAGTTCCATGGCTTGGTGGGAAGGTCTCGATGAAGCTCGTGTTCTTATTGCAAAAGGTACTTCCTTTACTAGACATTTTTTTTTTGTGTTTGTCCTCTAGTTTATGTTGATTACACCTTCATTAGGTTTTATTAGCAGAAAAGGAAGAAACTTTCAATTGGGTATATGGTTCTTTTTTTGTTTGTGAGTGTTCATTTATATCTCTTGGCTTGAGTTTGTGTCTTTTTTCTTACTGCTGTTTGTCTTTTGAGATTAGAGACATAGTATTATGTTTATAACACCTTCATTATGTTTTGTTAGCAAAAAAGGAAGAAACTTTCAATTGGGCACAATGATTCTTGATTGAATAATTACACCACAGGAAATCTGCTTTGCCTGTAATTTGGTGGGCAAATTGAGTTCATTATGTGTGCGATATTTCAATTCTTTGAGTATTTTCAACCATTTGGAATCTGAAGGAGTGTCTCAAGCATGTATGTTACTGCTGCTTAAGGTTCAGTAGCTACATGTAAGCTTCATCCCCAAGGATGGAGATGGATTTGAAGATTTCAAGACTTGTTGGCTCTTCCAGATATGTCGTTAAACTGATACACTTATCATATAGTCGAATCTTGATTATGGAAATAAATAAGTCTTTTCGAAAAAAGAAAGAAAGAAATCATCTCGACATCTCTTGCTGTGTTGCTGGTACATGGGAACAATCATATGTCAATCTCTTAGATACAGCTCTAGAATCTTCTATACACACTTGAATGCAATATCAAGCTCACTTTGACATTGCAGAGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCGCTCCGACATCCAAAATCTGGTAAATCCCTGCACTTTTCATGCAGCTGCTTGTTTGAGATGTCTTCAGTTATGTGTATTTTTGTTTACTTTTTTCCTATGGTTATAATGCTTTCATGGCAGTGGCTTGAGATATTGTTTTTGTGGATGTATCGAAATTGCTATAGGTCATTTTTTGTTAACCACTCTAACCTCTTGCTGATTGCCATACTATCTTGTGGGAACTGGTTTGCCACTATGATTGTATTAATAGTCCAGTAGCATTGATATAATTTTTTAAAAAATTCTTTTTGTGACAGGAAATGCAACATGTTACCTTTGTGTTGATGAATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTTATGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAGGTAAACATTTGTCCGAGCTTGGTCTAAAAAAATTTGATAAATCCGTACTTGCCCTCGTGGTTCATAATTTGTCTTGACGAATCAATCTCTTCAAGGTAATAGTTTACAGGAATACTATATGTTTACGAATGATAAGTGTGTAACCATCTCATCTTAAAGTTTAAGTGGTTAGAGAGCACAGTTTTATTTTATTAAATATATCTTCAACATCTCAATTTGCCTTTCATTATCTTATATTTATCCTCTTGTACTCTTTCTAGAGAAGCCTGTTGGTTATATCTTCTACTCTTCGAATCCGTCAATGCTATTAGTCATGATTTCTAGAGGAATTGTTAGTGCTTTCTTGGTAGTTCTTCTGTACTCATTTATTTCTCAAAACAGATGGTCGTTTGTATACTGCAACTCCAGTCGATCCAGTTTTTGTCCTGTTGCCTATTTTTGATGAAGCAAGAATGAAGGTATTAATTTCTAACTTCTGAGTGATTTATCTCTCTTAAGTTTCCTATATAAACAAACTACTAGCAAAAAGTTTATAGTAGAGAAGTGTAATACTTGAAAGTGTGTATTTCACATGCATTGTTGCTTTATATATTATTTATTGAGAAAAGGAATAGCTTGTAAACTACTTTAATTTGACTGTAAGAACTGTCTACAATATAGGTGACTCTATTACTCTCTTTCTTCTGAATGACTACGTAAGATTCAGATATCTTCTTTCGCTTTTGGCTGGTTGAGTTTCCTTTGCTGAATGCACCATTTGCAAGAGACAACTGTCTGCCACTTGACAAGCTGGTTTCTAATTGCTCTTTTGTTTATTGTGATAAATGCAGAAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATCATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAGGTGATAATATACTGTCATCCTATCTCCAGTTTTCTTTTTGGTCGTATTACGATATATGGCATGACATCTCATATTTTATGGAGTATTCAATAGATATATTATCCATGTATCTGACTTAAAGTTGTTTGGCAAATAAAGTGTAAAGAAAAACATATGAAAATGGTATTGAAATCTAACATGATGTAATTCATAAAACATTTGAAACTATAACATTTACTTTTGGGTTGGTGGTGAATGTCTAATCCAAGTTAATTAATTCTTAATATTGATGTCCATCCCTCTCCCTTGTTTTTTGTCCACAGATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGGTGCTAAAGTGGTTATGCTTGAAG</genome_strand>
        <mrna_strand>ATTTCGGCGCCAATTCCAAATTTCTGCAAAATCTCTTCTTCTTCTTCAACGCTATACGGCAAAATTGTTCCGTTCTTCTTCCATCCAGTG.........................................................................................................................AATAGTTCTCCTCCTAGAGGTTTTTCTTGTGCCAGAAAGGTTTCCATGGCTTGGTGGGAAGGTCTAGATGAAGCTCGTGTTCTTATTGCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCTCTTCGACATCCCAAATCTG.....................................................................................................................................................................................................................................................................................GAAATGCAACATGTTACCTTTGTGTTGATGGATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTCACGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGTTTGTATACTGCAACTCCATTCGATCCAGTTTTTGTTCTGTTACCTATTTTCGAAGAAGCAAGAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................AAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATAATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAG..............................................................................................................................................................................................................................................................................................................ATGTANGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGATGCTAAAGTGGTTATGCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313905" ref_strand="+" ref_description="SGN-E313905 [cTOA-17-L16]">
      <seq>ctagaggtttttcttgtgtcagaaagagttccatggcttggtgggaaggtctcgatgaagctcgtgttcttattgcaaaagagccttctaaggatgggaacaaggtagagcagcttttatcgctccgacatccaaaatctggaaatgcaacatgttacctttgtgttgatgaatctcttcaagaacttcactggttcaagcaatcttatgggtcttggttccttggggattatgtatgtgaagatggtcgtttgtatactgcaactccagtcgatccagtttttgtcctgttgcctatttttgatgaagcaagaatgaagaaaaatgatgatccaggaaagtttaggcaagtggatgaaatcatttatgttgtaggctatcctggatatcagcatctttcttccattgctgagaactgcatgcaagtggtttgtgatgtcaaagatgtaggaatgacaaagtttttcaggcttaatgatgagaaggtgctaaagtggttatgcttgaaggtaatacaattgaagaagacattgttgacactggataagaactatgctgctcgagataagaaagaaatattaactgatgcagtatctatagttggagagtacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95805" stop="100100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96105" g_stop="96185" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96186" i_stop="96912" i_length="727">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96913" g_stop="96972" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="141" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96973" i_stop="97249" i_length="277">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97250" g_stop="97351" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="243" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97352" i_stop="97732" i_length="381">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97733" g_stop="97809" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="320" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97810" i_stop="98181" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98182" g_stop="98305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="444" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98306" i_stop="98607" i_length="302">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98608" g_stop="98672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="509" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98673" i_stop="99422" i_length="750">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99423" g_stop="99492" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="579" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99493" i_stop="99765" i_length="273">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99766" g_stop="99800" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="614" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E313905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96105" e_stop="96185"/>
          <exon e_start="96913" e_stop="96972"/>
          <exon e_start="97250" e_stop="97351"/>
          <exon e_start="97733" e_stop="97809"/>
          <exon e_start="98182" e_stop="98305"/>
          <exon e_start="98608" e_stop="98672"/>
          <exon e_start="99423" e_stop="99492"/>
          <exon e_start="99766" e_stop="99800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGGTTTTTCTTGTGTCAGAAAGAGTTCCATGGCTTGGTGGGAAGGTCTCGATGAAGCTCGTGTTCTTATTGCAAAAGGTACTTCCTTTACTAGACATTTTTTTTTTGTGTTTGTCCTCTAGTTTATGTTGATTACACCTTCATTAGGTTTTATTAGCAGAAAAGGAAGAAACTTTCAATTGGGTATATGGTTCTTTTTTTGTTTGTGAGTGTTCATTTATATCTCTTGGCTTGAGTTTGTGTCTTTTTTCTTACTGCTGTTTGTCTTTTGAGATTAGAGACATAGTATTATGTTTATAACACCTTCATTATGTTTTGTTAGCAAAAAAGGAAGAAACTTTCAATTGGGCACAATGATTCTTGATTGAATAATTACACCACAGGAAATCTGCTTTGCCTGTAATTTGGTGGGCAAATTGAGTTCATTATGTGTGCGATATTTCAATTCTTTGAGTATTTTCAACCATTTGGAATCTGAAGGAGTGTCTCAAGCATGTATGTTACTGCTGCTTAAGGTTCAGTAGCTACATGTAAGCTTCATCCCCAAGGATGGAGATGGATTTGAAGATTTCAAGACTTGTTGGCTCTTCCAGATATGTCGTTAAACTGATACACTTATCATATAGTCGAATCTTGATTATGGAAATAAATAAGTCTTTTCGAAAAAAGAAAGAAAGAAATCATCTCGACATCTCTTGCTGTGTTGCTGGTACATGGGAACAATCATATGTCAATCTCTTAGATACAGCTCTAGAATCTTCTATACACACTTGAATGCAATATCAAGCTCACTTTGACATTGCAGAGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCGCTCCGACATCCAAAATCTGGTAAATCCCTGCACTTTTCATGCAGCTGCTTGTTTGAGATGTCTTCAGTTATGTGTATTTTTGTTTACTTTTTTCCTATGGTTATAATGCTTTCATGGCAGTGGCTTGAGATATTGTTTTTGTGGATGTATCGAAATTGCTATAGGTCATTTTTTGTTAACCACTCTAACCTCTTGCTGATTGCCATACTATCTTGTGGGAACTGGTTTGCCACTATGATTGTATTAATAGTCCAGTAGCATTGATATAATTTTTTAAAAAATTCTTTTTGTGACAGGAAATGCAACATGTTACCTTTGTGTTGATGAATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTTATGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAGGTAAACATTTGTCCGAGCTTGGTCTAAAAAAATTTGATAAATCCGTACTTGCCCTCGTGGTTCATAATTTGTCTTGACGAATCAATCTCTTCAAGGTAATAGTTTACAGGAATACTATATGTTTACGAATGATAAGTGTGTAACCATCTCATCTTAAAGTTTAAGTGGTTAGAGAGCACAGTTTTATTTTATTAAATATATCTTCAACATCTCAATTTGCCTTTCATTATCTTATATTTATCCTCTTGTACTCTTTCTAGAGAAGCCTGTTGGTTATATCTTCTACTCTTCGAATCCGTCAATGCTATTAGTCATGATTTCTAGAGGAATTGTTAGTGCTTTCTTGGTAGTTCTTCTGTACTCATTTATTTCTCAAAACAGATGGTCGTTTGTATACTGCAACTCCAGTCGATCCAGTTTTTGTCCTGTTGCCTATTTTTGATGAAGCAAGAATGAAGGTATTAATTTCTAACTTCTGAGTGATTTATCTCTCTTAAGTTTCCTATATAAACAAACTACTAGCAAAAAGTTTATAGTAGAGAAGTGTAATACTTGAAAGTGTGTATTTCACATGCATTGTTGCTTTATATATTATTTATTGAGAAAAGGAATAGCTTGTAAACTACTTTAATTTGACTGTAAGAACTGTCTACAATATAGGTGACTCTATTACTCTCTTTCTTCTGAATGACTACGTAAGATTCAGATATCTTCTTTCGCTTTTGGCTGGTTGAGTTTCCTTTGCTGAATGCACCATTTGCAAGAGACAACTGTCTGCCACTTGACAAGCTGGTTTCTAATTGCTCTTTTGTTTATTGTGATAAATGCAGAAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATCATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAGGTGATAATATACTGTCATCCTATCTCCAGTTTTCTTTTTGGTCGTATTACGATATATGGCATGACATCTCATATTTTATGGAGTATTCAATAGATATATTATCCATGTATCTGACTTAAAGTTGTTTGGCAAATAAAGTGTAAAGAAAAACATATGAAAATGGTATTGAAATCTAACATGATGTAATTCATAAAACATTTGAAACTATAACATTTACTTTTGGGTTGGTGGTGAATGTCTAATCCAAGTTAATTAATTCTTAATATTGATGTCCATCCCTCTCCCTTGTTTTTTGTCCACAGATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGGTGCTAAAGTGGTTATGCTTGAAGGTCAGACTTCATCCCTCACAAGCCCATGTATTGGGTGGTTTTTTTTGCTCTGAAACAATGTGCTGTGATGATCATGTTCTAGCATTCAGAGTAAAAATCATAACTTTTTGGAAATTAGAAGTTCAAGAGTTCTTGTGATTGACTCTCCGGGATCTGATCTTTCCAATCTGTAAAAAGTATGAAAATCCACTTATAACTTGTTCCAGTTAATGGCCTGTAATAGTAAAGCTTGTAGATGGATCTCCCGTTGGTTATGTCTACATTGAGTTCTGAAGATGGTCCAATGATAAGTCCACATAGTTATATAAGAAATTTGCTTCCACATGATCTGGCTGCCACTCTGATCCACTTTAGTGTAAGTGTACTTAATTATTTGCAATGGTATAACTTTCTACCTGCCCTGTCACTAGGCTTCAGTAACAACTTACAATAACTAAGAGAAACAGCTTTGCACCATAGTGCATGCGTTATCATTTAGCGCGTACTTGGACTTTTTCAAATGGAAATGATGCAACTTGGGTGTAAAATAACTAAGTCATTTATTTCCAAAGGCCAAAGGGAAACCAACCAGAGTCTTACATAAAAGGAACTAATAATCTCTTCTATTTTGAGGTGTTCTTTATATTTTGGTAGCGTCTTGTAAATTCTTCTCTGTTTACAATGGTCTATCCATCTTACAGATTGAGTAGTCTGTCAGACACAATTTTCATTATGTTCATGTCTCTATTTTAACTTTTAACATATTTGTAGGTAATACAATTGAAGAAGACATTGTTGACACTGGATAAGAACTATGCTGCTCGAGATAAGAAAGAAATATGTACGTCTCCTTTTGAATAATGTGTTTGTTAAACTTTTTACCCTTAAAGATTATGATTCTCATAGCCAATTATGGTCCTTCAAAGACATTTTTCGCATCGTGCTTTGTTTGAGAAACTCTTCAAGTATCTTTAATGTATCCTTGGTTTCAAGAACCAGGAAACAAGTTTGTTTGGCCAATTCAGCGCACTTATCATCTTAAATATGTGATTTGCTGTCACGTCCATATGAATGCTAAAAGATTATACTGATTAATGCTTTTTGAATTAAACAGTAACTGATGCAGTATCTATAGTTGGAGAGTACTTG</genome_strand>
        <mrna_strand>CTAGAGGTTTTTCTTGTGTCAGAAAGAGTTCCATGGCTTGGTGGGAAGGTCTCGATGAAGCTCGTGTTCTTATTGCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCGCTCCGACATCCAAAATCTG.....................................................................................................................................................................................................................................................................................GAAATGCAACATGTTACCTTTGTGTTGATGAATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTTATGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGTTTGTATACTGCAACTCCAGTCGATCCAGTTTTTGTCCTGTTGCCTATTTTTGATGAAGCAAGAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................AAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATCATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAG..............................................................................................................................................................................................................................................................................................................ATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGGTGCTAAAGTGGTTATGCTTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATACAATTGAAGAAGACATTGTTGACACTGGATAAGAACTATGCTGCTCGAGATAAGAAAGAAATAT.................................................................................................................................................................................................................................................................................TAACTGATGCAGTATCTATAGTTGGAGAGTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359009" ref_strand="+" ref_description="SGN-E359009 [cLHT-11-A23]">
      <seq>attaaactaccactatttttattaagttctattcataaaatgagtgagaaaaaatcatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataattatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggttcaacatggctcaagtccatatgtatagccatcatgcaagctggtcataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101564" stop="115460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101864" g_stop="102121" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102625" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="548" r_length="292" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E359009" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101864" e_stop="102121"/>
          <exon e_start="102331" e_stop="102625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACTACCACTATTTTTATTAA-TTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTT</genome_strand>
        <mrna_strand>ATTAAACTACCACTATTTTTATTAAGTTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTG---AATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG.................................................................................................................................................................................................................GTTCAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTCATAAAGA-G--GAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359182" ref_strand="+" ref_description="SGN-E359182 [cLHT-11-D7]">
      <seq>ctcgtgcatttttattaagttctattcataaaatgagtgagaaaaaatcatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataattatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggttcaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101578" stop="115479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101870" g_stop="102121" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102644" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="560" r_length="311" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E359182" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101870" e_stop="102121"/>
          <exon e_start="102331" e_stop="102644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCACTATTTTTATTAA-TTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATCAATAGTCGTAACCGT</genome_strand>
        <mrna_strand>CT-CGTGCATTTTTATTAAGTTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTG---AATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG.................................................................................................................................................................................................................GTTCAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGA-G--GAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546462" ref_strand="+" ref_description="SGN-E546462 [TUS-69-N11]">
      <seq>ctaacactttctattcataaaatgagtgagaacaaatcatcaccaattgtgaataataatgaagaaatagagaggattatagagaaactgcccaaaactgatcatttttggaataactctcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaatcagaacctaatgatgttctcttggcatcttccatgaaaacaggtacaacatggctcaaggccatatgtgtatccatcatgcaagctggtaataaagaggaagaagaagaagaccttttagttaaggataatcctcatttctatgttccaacaatagaggtcatggattattattcaaaacctctaactcatgatctatacacaatgccctctccaagattatttcacactcatttaccttatagagttttgccagattcaatcaaaaattcgaataattgcaagattatatacataacaagaaatcctaaagataccttaatttctatgtggcatttcatgaatagtcgtaaccgtttagaagatctctctcctttagaagaagttgtggagcacttttgcaaaggggttcatctgtatgggcctttttttgaacatgttcttgaatattgggaagaaagtaaannagagcctcaaaaaatattattcttgaagtatgaagacttgaagatagacactaagaaaagagtggcaaaaatagccttgtttcttggaaaccttttggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101589" stop="103155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101881" g_stop="102121" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102856" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="766" r_length="525" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E546462" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101881" e_stop="102121"/>
          <exon e_start="102331" e_stop="102856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTAATTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATCAATAGTCGTAACCGTTTAGAAGATCTCTCACCTTTAGAAGAAGTTGTGGAGCACTTTTGCAAAGGTGAACATCTGTATGGACCTTTTTTTGAACATGTTCTTGAATACTGGGAAGAAAGTAAAAAAGAGCCTCAAAAAATATTATTCTTGAAGTATGAGGACTTGAAGATAGACACTAAGAAAGAGGTGGCAAAAATAGCCTTGTTTCTTGGAAAACCTTTTGGTAA</genome_strand>
        <mrna_strand>CTAACACTTTCTATTCATAAAATGAGTGAGAACAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAG.................................................................................................................................................................................................................GTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATGAATAGTCGTAACCGTTTAGAAGATCTCTCTCCTTTAGAAGAAGTTGTGGAGCACTTTTGCAAAGGGGTTCATCTGTATGGGCCTTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGTAAANNAGAGCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACACTAAGAAAAGAGTGGCAAAAATAGCCTTGTTTCTTGG-AAACCTTTTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358824" ref_strand="+" ref_description="SGN-E358824 [cLHT-24-P17]">
      <seq>taacactttctattcataaaatgagtgagaacaaatgatcaccaattgtgaataataatgaagaaatagagaggattatagagaaactgcccaaaactgatcatttttggaataactctcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaatcagaacctaatgatgttctcttggcatcttccatgaaaacaggtacaacatggctcaaggccatatgtgtatccatcatgcaagctggtaataaagaggaagaagaagaagaccttttagttaaggataatcctcatttctatgttccaacaatagaggtcatggattattattcaaaacctctaactcatgatctatacacaatgccctctccaagattatttcacactcatttaccttatagagttttgccagattcaatcaaaaattcgaataattgcaagattatatacataacaagaaatcctaaagataccttaatttctatgtggcatttcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101589" stop="102931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101882" g_stop="102121" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102631" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="541" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E358824" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101882" e_stop="102121"/>
          <exon e_start="102331" e_stop="102631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAATTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATCAA</genome_strand>
        <mrna_strand>TAACACTTTCTATTCATAAAATGAGTGAGAACAAATGATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAG.................................................................................................................................................................................................................GTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358822" ref_strand="+" ref_description="SGN-E358822 [cLHT-24-P13]">
      <seq>taacactttctattcataaaatgagtgagaacaaatcatcaccaattgtgaataataatgaagaaatagagaggattatagagaaactgcccaaaactgatcatttttggaataactctcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaatcagaacctaatgatgttctcttggcatcttccatgaaaacaggtacaacatggctcaaggccatatgtgtatccatcatgcaagctggtaataaagaggaagaagaagaagaccttttagttaaggataatcctcatttctatgttccaacaatagaggtcatggattattattcaaaacctctaactcatgatctatacacaatgccctctccaagattatttcacactcatttaccttatagagttttgccagattcaatcaaaaattcgaataattgcaagattatatacataacaagaaatcctaaagataccttaatttctatgtggcatttcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101589" stop="102931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101882" g_stop="102121" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102631" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="541" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E358822" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101882" e_stop="102121"/>
          <exon e_start="102331" e_stop="102631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAATTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATCAA</genome_strand>
        <mrna_strand>TAACACTTTCTATTCATAAAATGAGTGAGAACAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAG.................................................................................................................................................................................................................GTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358931" ref_strand="+" ref_description="SGN-E358931 [cLHT-24-O20]">
      <seq>taacactttctattcataaaatgagtgagaacaaatcatcaccaattgtgaataataatgaagaaatagagaggattatagagaaactgcccaaaactgatcatttttggaataactctcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaatcagaacctaatgatgttctcttggcatcttccatgaaaacaggtacaacatggctcaaggccatatgtgtatccatcatgcaagctggtaataaagaggaagaagaagaagaccttttagttaaggataatcctcatttctatgttccaacaatagaggtcatggattattattcaaaacctctaactcatgatctatacacaatgccctctccaagattatttcacactcatttaccttatagagttttgccagattcaatcaaaaattcgaataattgcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101589" stop="102874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101882" g_stop="102121" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102331" g_stop="102574" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="484" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E358931" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101882" e_stop="102121"/>
          <exon e_start="102331" e_stop="102574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAATTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTCAATTTGATTAATGAACTCATCAAGTATTTTATGTTCTTGTGGAAAAATATATCTCTTAGGTCTACCTTTCATCAAATATATATTTTTGTCAAGCCCAAATTGTAACTTTTTACATATCAATGATCGACAAAAAAAAACAAAACTACATATTTTCATTCTAATGTCTAATGTTTGTCTTGCAGGTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGAT</genome_strand>
        <mrna_strand>TAACACTTTCTATTCATAAAATGAGTGAGAACAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAG.................................................................................................................................................................................................................GTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696686" ref_strand="+" ref_description="SGN-E696686 [LH_Ea09M12](-)">
      <seq>aaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaagttgaagcttcaagggagtggccttgaactttgatacttatacccaagaagtttttaaaacacatttgaactacttgacatgaattattagtatcatttttgaattattgacagttttaaaaacatccatctatttggctaattcaacttaagtacaccccgatatgccacatagcataacaagtagtctcaaagtactcttgtacgagcgtgtgagctctgaatagaaagtcgagataagtgcttaaaacacccctaaacttgacgagaattaggggtgtatttcacttgtgttgcaagattaggattagggtgtatttaagttgaattgttcaagtagaatggtgattttatggctgtcaataatttagaaaaactgataatttacgccaagtttagaagtgtttctagaatacttctctcttcttataattactattttaaataaggttttctattacttcatcagagtgaataataagtcaaggttgtgaaaatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102671" stop="116246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102971" g_stop="103221" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103222" i_stop="105234" i_length="2013">
            <donor d_prob="0.823" d_score="0.94"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105235" g_stop="105247" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="263" r_length="12" r_score="0.538"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105248" i_stop="112459" i_length="7212">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112460" g_stop="112464" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="267" r_length="4" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112465" i_stop="115769" i_length="3305">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115770" g_stop="116076" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="571" r_length="304" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="588"/>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E696686" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102971" e_stop="103221"/>
          <exon e_start="105235" e_stop="105247"/>
          <exon e_start="112460" e_stop="112464"/>
          <exon e_start="115770" e_stop="116076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGGCCTTGAACTCTGATACTTGTACCCAAGAAGTTTTTAAAACACACTTGAACTACTTGACGTGAATTATTAGTATCATTTTTGAATTATCGATAGTTTTAAAAACGTCCATCTATTTGGCTAATTCAACTTAAGTACACCTCGATCTGCCACACAGCATAGCAACTGGTCTCAAATTCTTATACGAGTGTGTTGAAAACAACCTTAAATTCTTGATGTTTTTCACCCATGTGGCAAAGATGGGATGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTAATGTTGATTGGGAAGTAATTATACTGAAGCTTTAATATATATTATCATTCCTCTACATTGTTTTAGTGAAGCTTAAATTTGTCCAGTGTTGATTGGGAAGTAATTAGGCTTAATAACAATGCAATAAAGCATAAGCTTATAATTGAATTAATATTGCCTTGCTTGTCCATGACTCCTCTCTTTTGAGATGAGACGTGTCTGATCGTAAGATCATATTTTGTGCATCCGACTATTCGTTTTTATTATAAAGTAATGCCGAAATTTTTGTGTGCTATATATATAAAGACACAGAGGAACACAAACTTCTGATTGTCAAGCTAGGTTTTGGAAAATAATACTCCTCCATATACATAACAAGAATTTTACATAAACCTAATTCCATTTTACAGAATAAGTTAAAGTATGAATAAATGAACACGTTTTAGAAAACTTAAACTAGAATATGGGTGTAAAACCGATTAATTTCCTTTTTGACCATAAAAGTTAAAATAAAAAATAAGTATAAGATTACGACACCTATACATCTCATCTAAACGAGTTGATATCGACTATATGATATGAATCACTGACCATCTTCTTCGTAAACAATTTACAAATACGGAGAAGAGATTTTCTCTAAAAAAAGAACACTAAAAACCAAAAGAAAAATTTAATTTTTCATAGATCAGACTTCCTCTAAAAAAATGTAGAATGTCTAATGTCAAAGTTGCTAACAAACTCTTATCCTAAAAGTTTCATTTCTTATCCTTTTAACATTAGGACTTGACCAAATACTGTGTAGGTTTGGTTTAAAATTTTTAATTTGGTTTGATATTTAGAAAATTTGAACCAACCCGGTCATGTATACACAGATTGAGCTATGTCTAATCCCCACATTTGGTGGATTTTGAAAAAAATTATAGAGCTATGAATGGACAAAAATTAGGATGACTTTACATTCAATTGATTTTTCCTTGCTAATTAAATCATAAATTAATTCGTGATGGTATATTTTTTCAAATATTTCTTTACAAAGTATAAGAAGAAATTTATACTATATGATTTTTTTGGATACCTATAATATAGACTATACGAGAACTAACACTATGTTTGGATCATTGTCACCCATTGTATTGCATTGTATTGTTACTATATACAATGTTTGTTTTTGTTGATACTTAAAATGTATTGTATTATATTGTTAAATTTCGTTGTTATGTAACAATTAAAATCTCTATTTTATGAAATAACCGATTTAGTGTGTTACCATTGTTACTTAATTTCTTTTTCCAATTATATCTTTACATAATATTTCAAAAATACTATTTTACCCTTTACCTTAATTATTTAAATCTATTCAAACCGCCTATCCTAGAATAATTAAGGATGTTATAGTAAATTTATAAATTACAATCATTTACGATACAATCAATCCAAACAATTAAAATGTTATTAAACAAAAACAAACAATATAGTCTAGTCAAACATTATATCTACCATACAATTGAATAGAATATAACACAATACATTATCAAACAATGAGTAACAATGATCCAAACAAAGTATAAATACTATAAATCCCTGATTAATTACGTAAAGTAATTTGATTATGTAAATATTTTTCAAAAATGACTCTTCCTTCCTCTATATATAGACACATCACACACGTATCATTTGGCTAATTAAACCATATAAGTACCACTATTTTTTTATCAATTCCATTCCTAAAATGAGTGAGAAAAAATTATCACCAATTGTGATTAATAATGAAGAAATAGAAAATTATAGAGAAACTACCCAAAACTGATCATTTTTGGAATAACTTTCAACTATATCAATGGGAAAGTTTTTGGTCCACTCTTCCAATTATAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATATTGTCTAGGTATCTTCCATGAAAACAAGTTTTTATTAATTAATCAATTGATTTAAGTTTAATTAATGAACTCATTACTCATCAAGTATTTTATGTTTTTGTGGAAAAATCTCTCTTAGGTCTACATTTCTTCAACTATATATTTTCGTCAAGTCTAAAATGTAAATTTTTACACATCAATGATCAACAGAAACAAGATATTAATTGACTACTAAAAAAAACCACTTCTTCCGTTTCACAAAGAATGATCTAGTTTGACTTGACATGGAGTTTAACAAAATAAAGAAAACTTTTGATCATGTGGTCCTAAATTAAAGTTATGTCAAATGTACAAAATTGTCTTTTAATCTTGTGCTCTTAAACATACCACGTGGAAAGTTGTTACCAAAAAATGAAAAAGGTAATTCTTTTAGAAACAGCTAAAAAAGAAAAGGAGGTCATTCTTTTTTAAACGGAAGGAGTATATATTATCATTCTAATGTCTAATGTTTGTCTTACTGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGGTAATAAGGAGGAAGAAGAAGACCTAGTAGTTAAGAATAATCCTCATTTTCATGTTCCAACGATAGAGCTCATGCATTGTTATTCAAAACCTCTAACTCATGATCTATACATCATGCCCTCTCTAAGATTATTTCACTCATTTACCTTATAGAGTTTCAAATAATTGCAAGATTATCTACATAACAAGAAATCCTAAAGATACCTTAATTTTTATGTGGCATTTCTTCAATAGTCATATGCGTTTAGAAGATCTCTCTCCTTTAGAAGAAGTTGTGGAGCACTTTTGCAATGGGGTTCATCAGTATGGACCCTTTTTTTGAACATGTTCTTGAATATTAGAAGAAAAAAAAAGCCTTTAAAATAATTCTTTTGAGGTATGAAGACTTGAAGATACACCCTAAGAAAGATGTGGCAAAAATAGCCTTGTTTCTTAAAAATCCTCTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGGGAGGCTTAAGAATTTGGAGATTAATAAGAGTGGATCAATCTTCTATTCTGTCAACAATAATGCATTTTTCAGAAAAGGAGTTGTTGGGGATTGGAAGAATCACATGACACTTGATGGAAGAGCAACTTGACAAGATTACCAAGTTGAAGCTGCAAGGGAGTGGCCTCGAACTTTGCTAGTTATAAACAAGAAGTATTTAAAACACACTTGAATTACTTGACGTGAATTATTAGTATGATTCTGGAATTATTGATGATTTTAAAATATGCATCTATTGGCTAACTAAAATTATAATTTAGGAGAGAGTCAAAGAGTGGGAGAAAGGTGATCATATATTATATATTTATATAAAAGAGAACCCTAAGCTCGCCTACATGGCGCCAACATCAACTATCATTCCCTTTTAAATTTATTTATTTCAAAAACTAGCTCTCAATTTTCATGATAAGTTGCTACTTTAATGAAAAGTTGTAACATTTTAGAAAAGTTGAGACTTTTATAAAAAGTTATGACTTTTATGAAGAAATACGACTTTTATGAAAAATTGTGATTTTTATGAAATGTTGTGACATTTCTGAAGGGTTGTAACTTTTTCAAAGAGTCGTGACTTTTCTGATAAGGCACAATTAACATTTGTTCACACTAATGTTGTTTATAAATTGAGGAATTTTGTGCAACTATAGTTGTTTTTTTTCCACTATAGGGTTTTCAAATTCAAATACATTAATTAAATGTTTACGAAGTTTGTTTCATTCTTGAAAATTTTCACGGAGCTTAATCTTTACTATAAGTCATAGTGATTCATGTAACTATGACCAAAAAAAAATCCTATTTTGCTGACACTCTGTTAAAGTTTCAACAAGGATGATTCAAAATTGATCTTCTCGTTTGTCTATTTCTATAGGTTTTTCATTAAACAAAGAAAATTGATTTCAATTACAATGCAATTCACTACTGAAATGGTTGATGATTGAATTCATTATATTTGTTTCTTTTGTAAACAAATCTTTATTTCTTTCATTATTATTTGTATGTTTTTTTTCGAATTCAAATACATTTATTAAGCTTCTTATAATAAAGTGTGTTTCATTTCTCAAAGTTTTCATCTTCTTTTTGCAATTTTGGTGACTTTTTTTTAATTATGTTCAAAATTTCAGTGAAGATGATTGAAAATTTATCTTCTCTTTTGTCCGTTTCTACAAGATTTCTTCATATACTTTTTGGGGTTTGTGAGTGTGCTATATTTGATAGCACAGATCAACAAATATTTGATAATTAATACGGTACCAATAACGAAGTTTGTTAAAAGAACCAAAATGATTTCTCTCTTACTTGCCACTGTTAGTGTATTATTCTAATTGTTTTTTCTTGGCTACAAATATTTTGTGTGCCATTGGACTATTCCTAAAATATTTGTACAAACATTTTGTATGTCATTGCACTAATTTGTCATATTTCTTCTTTTCTTATTTTTGGGGTATATAAGAGATCAAGTTTTTGTGAAACTAACAAATGTCTAAAATACACTATAACAAAAAGTTTTAACGGCAATGAATATGCGCGTTCACGAAGAGTGCTATAGTCTTTATCGACATTAATTAATTGTCATTATTGGATTCAATGTTACTATAGACTTTAGGAACATTTATACATAGTACCAATTGAATACACATTTACCGATAATTAAGCTACTAATTATCGTTAAAGATCATTTTTCTGTACGGATAACTCATTTCGTTGATAATGTTTTTTTTTATGAAGAAGTAAGAACTCTTTCTTTTGGCTTCTTTCAATTTAATTTGTAAATCGTAAATTTGTAAACGACCTGAAAGATTTTTTTTTGAATAATATATAAGCAACATGCCATTTTCTTCTTGATTGTTAGGAAAATAAGGTCGTCTTTATTATTTTTTTTTAATATTTTTGAGTTTAAGAGCTTACAATATTATGTTATGAGATTTAATATGTTATATGTCAAAAATTTTGTTTAGTACATCCCGTTGTGAACATTCAGATGTCACCTACTGCTTGGTTAATAAGTGTATTATTTTTTGTTACTCCATACTATAAGCATAACAATAACTATGGTTTAGTCCAAAAGAAGTTGGGGCCGGTGATATGAAATCTTAAAAATAGTAATGGCTATTTTGAGACAAAGACAAAAAAAATATTCATGATAATAACAATTTTAGGGTTATTTTTAGCATATAATTAATATGTCATACAATAATAAAAATAGATTAATGGGCCGCATCTTATGCTTTCGTTGCATTTGGCATTTGTCCTTAAAAAAGTCCTTATTGCCTTCATGATTTGGCGCATCTTTCTTTCCTCCAAGAGAAAACACTGCTCAGTGAGACAATGTAGTTAAGTCAATAGCAGCCAGAGAGGTTTACAAGAAAGGGGTCCAAGGTAATCCATTTAAATTTAGTTAATTATAATCTTAGATGTGATGTTCAACTTTATATGGGAGCGTTGTTGTTCGAAGGTTTTTGCTCTCTATGTTAATAACGTCTAATAGGGGTGTACAAAATCGAACCGAAATTCGAACCAAATCGCAAATCAAGTCAAATAAAAAAAATCTCGACTAGTGGTTCGATTTGACTTGATTTGGTGTTGGCAAAAAAATCCGACTATATTTGGGTTGGTTTGGTTTCAAACTAAGAAAAAACCCGAGATCAAACCAACTCAATATTATATATATAATTTTTAAATATCTCTTATACTTTTGCATAGTTTTTATCTTTTAATATATTTATTTCATATTTGGAAGTTAGAATTCTTAATGATATAATAAAGATTATAGTTCATACATGTTGGTAATTATAATAAAATTTAAATAAAAATCAATTCAACACTATGAATGACAATGTTATTGAATATTTGTTTTTTAGTTTTACATAGATTTAGACAATTAAAATACATGATCTAGTTTTACTTTCTTTTAATATTTAGTCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTACTTTAAATTATGATCAATTCATTATGACTTATTAATTTGCAATATTTTTGACATGATTTTATTATTATTTTTTGTTGGATATTTTAGTGTGATTAATCATACCATATTTTTTGTTATTTTATTGAGAAATAACTTAGATAGTTGCATTTTGGTAGGACTAAAGAAATATTTGATGTACAAGTAAATTATATGTTTGTATGAATATTTTATCGAAAAAACTCGAAAATCTGAAAAAACCCAAGAAACCCGAAAAAATCCGAAGTTGAAAAACTCGAGTTTTATTAGTTTGTTTTAATTTATAAATTCAAAAACCCGACATAAATAGTTTGGTTTGATATTTGAAAACCCGAACCAACCCGGTCATGTTCACCCCTAACGTCTGATATTGTTCATTATAACTTCTTGGTATTTAAAAAAATTCATTACATCTGACCAACTATTTCCAGAGAGATCTTCTTACACTTCTTTTTCATACTTAAAATCTATCTATGACTCATAATTTTTGTATAACAAAATATGACATACAACAATAAAAATGATATCGATGGAGGTTCATAAGAAATGAGTCCAACGTCGTCCATTTGAGTTTAGTTAATTATGATCTTGTATGGACGTGATGTTCCACTCACTTGGGACTGTTGTTGTACGACATTTTTCGGTCTCTTTTTTAACCTCTGTTGTTGTTCTTTATAACTTCTTCGTATTTAAAAAATTTCATTGCATCTGACCAACTATTTGCAGGGAGATTTTCTTACAGTTCTTTTGTATACTTAAAATCTATTTATGACTCATAATTTTTGTATAATAAAAATGAAAATTAAAAAAAATAGAACTTTAATATTTCAGAGGAACGATTGACCTTAAGATAAAATGTTCTCGACAATATAGTGTATGTATCGAAAATACGAATATTACCGAATGATCATATATAACTTAATAAAATAGTTCAATCACATGCGAAGCACGGGTAATTTACCTATTTGTATGTATATATATATCTGTTAGATAATTATATATTATACATATGTATTTGTATATTCTGGTGAATTATACATATACAAACGTGATTAATTATACAAACTCGAAGTCAGCCCTCATAATTAATAAACAATGTTAATCGTGAGTGATAATTATAGCAAACTATAACTATAATGCGCAATCAAATAGTATAAATTTACTTAACCGCTTCATTTTCCCATAAGAAAATAATATTATAAGGCAATTTAAACTCTATTTATTTTCTACCAAGTATGTATGACATGGGTGGATTCATTGCTTGTCTTTTCTTTTTTTTTTCTTCTTCAAATTTTAGAGATGTACAAAATAAACTAATTTAATTTACAAAATTATGATATACCATCAAATTGAATTTGACAAATTTTTTTTACTGATATTGTGATACTTCTTAAATTTAACGTGAATGATTTCTAAATAAATGTGAAATTTAAATGAATTTCAAAAACCTCCTTTTACGTTTTGCTATGTTAATAATCCATGACGGTGTAATATAGTCAACGGAGATAAGAGACTTTTAAAAGCAAGTTGCGGATCCACACTATACTATAGGATGCACGTGCACCTAATAACTTACGAAAAATCGTATGTATATCTATTTTGAAAAAATGGTAGAAATTAAGATATAGTAAACAGTATATCCATAAAAAGCATAGAAATTCTCTTGTGCAATTGGTAGAAGTTAGAAATACCACCCTCTAGACCAGGGTTAGAATTCCTCTTAAGCCCTATTTTTGTTTCAAGTTTAACTTGGACCTTATATTTGAGCTATTTTATATGGATTAATTACTTGAATATACAACTTAAGTTTACATATTCTCCATATTTCCCTTATTTTTTTAAAAAATACTAAAATCCCTATTTTTTAATAAGTCTAATTTAACAGATACATTATTAAATTAGAATCCTAATAAATCCTAACCAATTAAATCTTATCCCTAATTTTACTCTTTATTTTCCCCAAATAAAGAACCCATTTACACCACTCCCAAAATTAATGCGTCAATTTCTCAACGATTCATCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAACCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATTTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTTTTGGGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTAGTTGAAAACAAGTCTAAGAGCTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTTTCTATTCATCCTTATAATTATTCTTATTGTTTTTGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTTATTCTATTACTTTTATTTTATTTTTATTACCGTTATGAATTCAGGAATTATGTATACTGTTATTGGGACATGAATGTCATTATTGTATCAAAACTATAATAATAATTACATTAATGTAATTATTGTCATAAAAAAACACTTATTATATATACGTAAATATATTGCATGATACAAAAAAAGAAAATTATATACGTAATTATATTTTGTATATGATACATGAAATATCAAAATATATAATATCACAAACAGTGATACTAGTTATTACACTAGATACACGCCAGTTTTTTTTTTTAAAAAAATTAATATCTTTTGTACAAATAAGATATATTCAGTACTATGATTTATATATATTACGAACAATTATTTATCCTTCAAAATATGAAATTTTTTTAAGTATCTACACACATGATACTATATTACTAAATTAAATTAAATTAGAACTGACAATAATTTGGGTGAAATATCCGCAATTAATATTGATTAAAGTAAGTTTGAACAAAGATTATAAAATAAAGTATTTGATATATAAATATAATATAAAATTTAAATAGTGTTTAACAAAAAAAAAAGAATTAGTTTGCCAAAAAAAAAAAGGGAAGATCACTAATGAAAAATTATAATTTAATTTAGAGTTTTATATTGGATAAAACTGATCTTGAAACACACACGTTAATGCTTTTTTTTATGGGATTAATAACTGTAGCATATTAAAAGTAGGAATTAATTCAAATTTCAGTTTTTAATCCCCAAATCACTCAACAAACGGATAAAATAGCATAATATAGAATGTATCCGACTGTTTTATTATGTATCAGAAACTTCTTAAAAATAAGGGATTTTTTGTAAATTGAAAAAAAGTAGGGATAGAAGGTAATTTATGTTTTACACTATGTGATTTAAATAATTTTTACATTTTATATTGGTGCATCCGGAGTTCAAATTCCACTTAAGAGCTATTTTTATTTTAAGTTTAACTTGGACCTTATATTTGAGCTATTTTTATATTGGTGCATCCAAAACCTTCAAATCCTGAGTTCACCTTTCTTCAATTGAATACATAGATAGGGAGGGCTATGCCTATCTAACAGAGCTGCGTATGGACATCAACTAGGATGACTTTACATTTAATCGATTTTTCCTTGCTAATTAAATAAAAAATTAACTCGTGATGTAAATTTTTTGTTATCCTATATATTATAGAGTATGCTAGAATCACTAAACTCAAGATGTTATATATCTCTTATTGCATCAGATTAATTGTGTTTGAGTAGTGTGATTATGTAAATATTTTTTAAAATGATTCCAACATCCTTCCCCTATATATACGCACACATATATCATTTGGCCAATTAAACTACCACTATTTTTATTAAGTTCTATTCCTAAAATGAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATCTACTCTTCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACATTCATCTATTTGTCTTACTCAACTTAAATACACCCTGATCTACCACATAGCATAGCAAATGGTTTCATATCCTTGTACGAGCGTGAGA-CTCTTAATAAAAAGTCGAGAGAAGTTTTGAAAACATCCCAAAATTTGACGAGAATTAGGGATGTATTTCACTCGTATGGCAAGATTAGGATTAAGGTGTATTTAAGTTCAATTAGTCAAGTAGAATGATATTTTTATGGCCGTCAATAGTTCAGAAATAAAACTAATAATTTACGCCAAGTTTAGAAATGTTTTTACAATACTTCTCTCTTCTTATAATTACTACTTTAAATAAGGTTTTCTATTATTTCATCCGAATGAATAATAAGTCAAGGTTGTTGAAAATA</genome_strand>
        <mrna_strand>AAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAGTTGAAGCTTCAAGGGAGTGGCCTTGAACTTTGATACTTATACCCAAGAAGTTTTTAAAACACATTTGAACTACTTGACATGAATTATTAGTATCATTTTTGAATTATTGACAGTTTTAAAAACATCCATCTATTTGGCTAATTCAACTTAAGTACACCCCGATATGCCACATAGCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-AGTAGTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTTGTACGAGCGTGTGAGCTCTGAATAGAAAGTCGAGATAAGTGCTTAAAACACCCCTAAACTTGACGAGAATTAGGGGTGTATTTCACTTGTGTTGCAAGATTAGGATTAGGGTGTATTTAAGTTGAATTGTTCAAGTAGAATGGTGATTTTATGGCTGTCAATAATTTAG--A-AAAACTGATAATTTACGCCAAGTTTAGAAGTGTTTCTAGAATACTTCTCTCTTCTTATAATTACTATTTTAAATAAGGTTTTCTATTACTTCATCAGAGTGAATAATAAGTCAAGGTTG-TGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229219" ref_strand="+" ref_description="SGN-E229219 [cLEL-29-B20](-)">
      <seq>ccttaaattcttgatgtttttcacccatgtggcaaagatgggatgtgtatttaagttttagttactcaagtagcaacaggtgttttcaaagctgtcaataattcgggaacgaaactaataattcacgtcaaatttaagtgtgtttttaatacttctttcttataatttctactttaacaagctttctattacttcatccgaatggataataagtcaaggttgttgaaaataataaagttaaatgtttttaaccatcttcacaagtctttagttatttgtaagatatgagtattaaaatatctcttactagttgacacctataaaaatttaccctttgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102963" stop="103902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103263" g_stop="103601" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="357"/>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E229219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103263" e_stop="103601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAAATTCTTGATGTTTTTCACCCATGTGGCAAAGATGGGATGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTA</genome_strand>
        <mrna_strand>CCTTAAATTCTTGATGTTTTTCACCCATGTGGCAAAGATGGGATGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228547" ref_strand="+" ref_description="SGN-E228547 [cLEL-29-B20](-)">
      <seq>tgtgtatttaagttttagttactcaagtagcaacaggtgttttcaaagctgtcaataattcgggaacgaaactaataattcacgtcaaatttaagtgtgtttttaatacttctttcttataatttctactttaacaagctttctattacttcatccgaatggataataagtcaaggttgttgaaaataataaagttaaatgtttttaaccatcttcacaagtctttagttatttgtaagatatgagtattaaaatatctcttactagttgacacctataaaaatttaccctttgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="103006" stop="103902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103306" g_stop="103601" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="314"/>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E228547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103306" e_stop="103601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTA</genome_strand>
        <mrna_strand>TGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556422" ref_strand="+" ref_description="SGN-E556422 [cTSD-3-G9]">
      <seq>cttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="111270" stop="113296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111570" g_stop="111797" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111798" i_stop="112464" i_length="667">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112465" g_stop="112579" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112580" i_stop="112653" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112654" g_stop="113002" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="693" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E556422" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111570" e_stop="111797"/>
          <exon e_start="112465" e_stop="112579"/>
          <exon e_start="112654" e_stop="113002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAACCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATTTGTCCGCCATTT-TTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTTTTGGGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTAGTTGAAAACAAGTCTAAGAGCTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTTTCTATTCATCCTTATAATTATTCTTATTGTTTTTGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</genome_strand>
        <mrna_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691799" ref_strand="+" ref_description="SGN-E691799 [LH_Ea07A21]">
      <seq>cgttttttattaagttctattcataaaatgagtgagaaaaaatcatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataactatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggtacaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttagaaaagggattgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101579" stop="115820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113287" g_stop="113304" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113305" i_stop="113848" i_length="544">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113849" g_stop="113872" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="41" r_length="23" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113873" i_stop="114394" i_length="522">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114395" g_stop="114597" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="244" r_length="203" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114866" g_stop="115520" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="902" r_length="658" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691799" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113287" e_stop="113304"/>
          <exon e_start="113849" e_stop="113872"/>
          <exon e_start="114395" e_stop="114597"/>
          <exon e_start="114866" e_stop="115520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATTAATATCTTTTGTACAAATAAGATATATTCAGTACTATGATTTATATATATTACGAACAATTATTTATCCTTCAAAATATGAAATTTTTTTAAGTATCTACACACATGATACTATATTACTAAATTAAATTAAATTAGAACTGACAATAATTTGGGTGAAATATCCGCAATTAATATTGATTAAAGTAAGTTTGAACAAAGATTATAAAATAAAGTATTTGATATATAAATATAATATAAAATTTAAATAGTGTTTAACAAAAAAAAAAGAATTAGTTTGCCAAAAAAAAAAAGGGAAGATCACTAATGAAAAATTATAATTTAATTTAGAGTTTTATATTGGATAAAACTGATCTTGAAACACACACGTTAATGCTTTTTTTTATGGGATTAATAACTGTAGCATATTAAAAGTAGGAATTAATTCAAATTTCAGTTTTTAATCCCCAAATCACTCAACAAACGGATAAAATAGCATAATATAGAATGTATCCGACTGTTTTATTATGTATCAGAAACTTCTTAAAAATAAGGGATTTTTTGTAAATTGAAAAAAAGTAGGGATAGAAGGTAATTTATGTTTTACACTATGTGATTTAAATAATTTTTACATTTTATATTGGTGCATCCGGAGTTCAAATTCCACTTAAGAGCTATTTTTATTTTAAGTTTAACTTGGACCTTATATTTGAGCTATTTTTATATTGGTGCATCCAAAACCTTCAAATCCTGAGTTCACCTTTCTTCAATTGAATACATAGATAGGGAGGGCTATGCCTATCTAACAGAGCTGCGTATGGACATCAACTAGGATGACTTTACATTTAATCGATTTTTCCTTGCTAATTAAATAAAAAATTAACTCGTGATGTAAATTTTTTGTTATCCTATATATTATAGAGTATGCTAGAATCACTAAACTCAAGATGTTATATATCTCTTATTGCATCAGATTAATTGTGTTTGAGTAGTGTGATTATGTAAATATTTTTTAAAATGATTCCAACATCCTTCCCCTATATATACGCACACATATATCATTTGGCCAATTAAACTACCACTATTTTTATTAAGTTCTATTCCTAAAATGAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGG</genome_strand>
        <mrna_strand>CGTTTTTTATTAAGTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAATG-AGTGAGAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCACCAATTGTGAATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAACTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCTATGTCTATCCACAATAGTGCATTTTTTAGAAAAGGGATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691800" ref_strand="+" ref_description="SGN-E691800 [LH_Ea07A22]">
      <seq>tttttattaagttctattcataaaatgagtgagaaaaaatcatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataactatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggtacaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101579" stop="115705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113477" g_stop="113487" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113488" i_stop="114366" i_length="879">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114367" g_stop="114597" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="241" r_length="230" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114866" g_stop="115405" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="778" r_length="537" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691800" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113477" e_stop="113487"/>
          <exon e_start="114367" e_stop="114597"/>
          <exon e_start="114866" e_stop="115405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGATTAAAGTAAGTTTGAACAAAGATTATAAAATAAAGTATTTGATATATAAATATAATATAAAATTTAAATAGTGTTTAACAAAAAAAAAAGAATTAGTTTGCCAAAAAAAAAAAGGGAAGATCACTAATGAAAAATTATAATTTAATTTAGAGTTTTATATTGGATAAAACTGATCTTGAAACACACACGTTAATGCTTTTTTTTATGGGATTAATAACTGTAGCATATTAAAAGTAGGAATTAATTCAAATTTCAGTTTTTAATCCCCAAATCACTCAACAAACGGATAAAATAGCATAATATAGAATGTATCCGACTGTTTTATTATGTATCAGAAACTTCTTAAAAATAAGGGATTTTTTGTAAATTGAAAAAAAGTAGGGATAGAAGGTAATTTATGTTTTACACTATGTGATTTAAATAATTTTTACATTTTATATTGGTGCATCCGGAGTTCAAATTCCACTTAAGAGCTATTTTTATTTTAAGTTTAACTTGGACCTTATATTTGAGCTATTTTTATATTGGTGCATCCAAAACCTTCAAATCCTGAGTTCACCTTTCTTCAATTGAATACATAGATAGGGAGGGCTATGCCTATCTAACAGAGCTGCGTATGGACATCAACTAGGATGACTTTACATTTAATCGATTTTTCCTTGCTAATTAAATAAAAAATTAACTCGTGATGTAAATTTTTTGTTATCCTATATATTATAGAGTATGCTAGAATCACTAAACTCAAGATGTTATATATCTCTTATTGCATCAGATTAATTGTGTTTGAGTAGTGTGATTATGTAAATATTTTTTAAAATGATTCCAACATCCTTCCCCTATATATACGCACACATATATCATTTGGCCAATTAAACTACCACTATTTTTATTAAGTTCTATTCCTAAAATGAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGG</genome_strand>
        <mrna_strand>TTTTTATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATTCA-TAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAACTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691325" ref_strand="+" ref_description="SGN-E691325 [LH_Ea05N03]">
      <seq>ccgaaaaatcatcaccaattgtgaataatgaagaaatggagacaattatagagcaactgcccaaaattgattatttttggaataactatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggtacaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114093" stop="115716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114384" g_stop="114597" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114866" g_stop="115416" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="758" r_length="548" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691325" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114384" e_stop="114597"/>
          <exon e_start="114866" e_stop="115416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAATGAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTG</genome_strand>
        <mrna_strand>CCGAAAA--A-T-CATCACCAATTGTGAATAATGAAGAAATGGAGACAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAACTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355971" ref_strand="+" ref_description="SGN-E355971 [cLHT-21-J12]">
      <seq>aaaatcatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataattatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggttcaacatggctcaagtccatatgtatagccatcatgcaagctggtcataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttataaggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114093" stop="115444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114392" g_stop="114597" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114866" g_stop="115144" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="482" r_length="276" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E355971" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114392" e_stop="114597"/>
          <exon e_start="114866" e_stop="115144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGA</genome_strand>
        <mrna_strand>AAAATCATCACCAATTGTGAATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTTCAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTCATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAAGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692323" ref_strand="+" ref_description="SGN-E692323 [LH_Ea08G17]">
      <seq>tatcaccaattgtgaataatgaagaaatggagagaattatagagcaactgcccaaaattgattatttttggaataactatcaactttatcagtgggaagggttttggtccactcttatcattttaaaggcagccatggtcttcaaggcaaccttcaaaacaaaacctaatgattttctcttggcatcttccataaaaacaggtacaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttaaaaaagggattgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114098" stop="115821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114397" g_stop="114597" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114866" g_stop="115482" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="815" r_length="614" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E692323" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114397" e_stop="114597"/>
          <exon e_start="114866" e_stop="115482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATCTACTCTTCT</genome_strand>
        <mrna_strand>TATCACCAATTGTGAATAATGAAGAAATGGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAACTATCAACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACAAAACCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691459" ref_strand="+" ref_description="SGN-E691459 [LH_Ea06C17]">
      <seq>ccgttaaaaggcagccatggtcttcaaggcaaccttcaaaaccactcctaatgattttctcttggcatcttccataaaaacaggtacaacatggctcaagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttagaaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaagttgaagcttcaagggagtggccttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101742" stop="115907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114515" g_stop="114597" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.86"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114866" g_stop="115607" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="828" r_length="745" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691459" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114515" e_stop="114597"/>
          <exon e_start="114866" e_stop="115607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACT</genome_strand>
        <mrna_strand>CCGTTAAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAAACCACTCCTAATGATTTTCTCTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCAAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCTATGTCTATCCACAATAGTGCATTTTTTAGAAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAGTTGAAGCTTCAAGGGAGTGGCCTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691042" ref_strand="+" ref_description="SGN-E691042 [LH_Ea05B08]">
      <seq>ccgatgagggttggcatcttccataaaaacaggtacaacatggctctagtccatatgtatagccatcatgcaagctggtaataaagaggaagaagaagaccttttagttaaggataatcctcatttttatgttcaaacaatagagaccatggattattattcaaaaactctaactgatgatctatacacaatgccctctccaagattatttcacacacatttaccttatagggttttgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttagaaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaagttgaagcttcaagggagtggccttgaactttgatacttatacccaagaagtttttaaaacacattttgaactacttgacatgaaattattagtatcatttttggaattattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114562" stop="115987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114565" g_stop="114597" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.758"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114866" g_stop="115636" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="806" r_length="774" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691042" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114565" e_stop="114597"/>
          <exon e_start="114866" e_stop="115636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTTCTCTTGGCATCTTCCATGAAAACAGGTTTTTATTAATTAATCAATTGATTTGAGTTTGATTAATGAACTCATCAACTGTTTTTATGTTCTTGTGTGTGTGTGGCGTGTATCATTTAAAAATTAGAATGCCTTATAGTTGGTATATATCTCTTAGGTCTACCTTTCATCAACTATATATTTTCATCACGTCAAAATTGTAACTTTTTACATATCAATGATCAACAGAAACAAGATATTAACTAGTAAAAAAGAAGTACATATTTTCATTCTAATGTCTAATGTTTGTCTTACAGGTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAA</genome_strand>
        <mrna_strand>CCGATGA-GGGTTGGCATCTTCCATAAAAACAG............................................................................................................................................................................................................................................................................GTACAACATGGCTCTAGTCCATATGTATAGCCATCATGCAAGCTGGTAATAAAGAGG-A-A-GAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCAAACAATAGAGACCATGGATTATTATTCAAAAACTCTAACTGATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCTATGTCTATCCACAATAGTGCATTTTTTAGAAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAGTTGAAGCTTCAAGGGAGTGGCCTTGAACTTTGATACTTATACCCAAGAAGTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691481" ref_strand="+" ref_description="SGN-E691481 [LH_Ea06D15]">
      <seq>ttctccaagattatttcacacacatttaccttatagggtcctgccagattcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagaacttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaaaaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttagaaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaagttgaagcttcaagggagtggccttgaactttgatacttatacccaagaagtttttaaaacacatttgaactactttacatgaattattagtatcatttttgaattattgacagttttaaaaacatccatctatttggctaattcaacttaagtacaccccgatataccacatagcataacaagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114733" stop="116065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115032" g_stop="115765" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691481" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115032" e_stop="115765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACATTCATCTATTTGTCTTACTCAACTTAAATACACCCTGATCTACCACATAGCATAGCAAATGGT</genome_strand>
        <mrna_strand>TTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTCCTGCCAGATTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAAAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCTATGTCTATCCACAATAGTGCATTTTTTAGAAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAGTTGAAGCTTCAAGGGAGTGGCCTTGAACTTTGATACTTATACCCAAGAAGTTTTTAAAACACATTTGAACTACTTTACATGAATTATTAGTATCATTTTTGAATTATTGACAGTTTTAAAAACATCCATCTATTTGGCTAATTCAACTTAAGTACACCCCGATATACCACATAGCATAACAAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691647" ref_strand="+" ref_description="SGN-E691647 [LH_Ea06K13]">
      <seq>cgtattatttccacacatttaccttatagggttttgccacactcaatcaaaaattcggataattgcaagattatatacataacaagaaatcctaaagataccttgatttctgcgtggcatttcttcaataatcgtaagcgtttagaagatctcactcctttagaagtagttgtggagagcttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttgaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgccttctatgtctatccacaatagtgcattttttagaaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaagttgaagcttcaagggagtggccttgaactttgatacttatacccaagaagtttttaaaacacatttgaactacttgacatgaattattagtatcatttttgaattattgacagttttaaaaacatccatctatttggctaattcaacttaagtacaccccgatatgccacatagcataacaagtagtctcaaagtactcttgtacgagcgtgtgagctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114741" stop="116096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115038" g_stop="115768" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E691647" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115038" e_stop="115768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACATTCATCTATTTGTCTTACTCAACTTAAATACACCCTGATCTACCACATAGCATAGCAAATGGTTTC</genome_strand>
        <mrna_strand>CGTATTATTTC-CACACATTTACCTTATAGGGTTTTGCCACACTCAATCAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTGATTTCTGCGTGGCATTTCTTCAATAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGTAGTTGTGGAGAGCTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGCCTTCTATGTCTATCCACAATAGTGCATTTTTTAGAAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAGTTGAAGCTTCAAGGGAGTGGCCTTGAACTTTGATACTTATACCCAAGAAGTTTTTAAAACACATTTGAACTACTTGACATGAATTATTAGTATCATTTTTGAATTATTGACAGTTTTAAAAACATCCATCTATTTGGCTAATTCAACTTAAGTACACCCCGATATGCCACATAGCATAACAAGTAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397935" ref_strand="+" ref_description="SGN-E397935 [TUS-37-L15]">
      <seq>ctcactcctttagaagtagttgtggagaacttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttaaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttttttttttttttgatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114889" stop="115703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115189" g_stop="115403" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E397935" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115189" e_stop="115403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTT</genome_strand>
        <mrna_strand>CTCACTCCTTTAGAAGTAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTAAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340948" ref_strand="+" ref_description="SGN-E340948 [cTOF-5-I14]">
      <seq>tcactcctttagaagtagttgtggagaacttttgcaaaggggttcatctgtatggacccttttttgaacatgttcttgaatattgggaagaaagcaaaaaaaatcctcaaaaaatattattcttaaagtatgaagacttgaagatagaccctaagaaagaggtggcaaagatagccttgtttcttggaaagccttttggtaatgaagaggatttggagatagttttgaacaagtgtagcttggagaggcttaagaatttggaggttaataagagtggatcactcttgtcttctatgtctatccacaatagtgcatattttagaaaagggattgttggggattggaagaattacatgaaacctgaaatggaagagcaaattgacaagattaccaaattgaagcttcaagggagtggccttgaactttgatacttgtacccaagaagtttttaaaacacacttgaactacttgacgtgaattattagtatcattcttgaattattgacgattttaaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114890" stop="115987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115190" g_stop="115702" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="SGN-E340948" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115190" e_stop="115702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATC-T-AC-TC--T-TCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACA</genome_strand>
        <mrna_strand>TCACTCCTTTAGAAGTAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTGTATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAATCCTCAAAAAATATTATTCTTAAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCACTCTTGTCTTCTATGTCTATCCACAATAGTGCATATTTTAGAAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGGCCTTGAACTTTGATACTTGTACCCAAGAAGTTTTTAAAACACACTTGAACTACTTGACGTGAATTATTAGTATCATTCTTGAATTATTGACGATTTTAAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>60</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="75" PGL_stop="6309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75" e_stop="370"/>
            <exon e_start="527" e_stop="640"/>
            <exon e_start="1804" e_stop="2208"/>
            <exon e_start="2707" e_stop="2775"/>
            <exon e_start="2891" e_stop="2962"/>
            <exon e_start="3384" e_stop="3512"/>
            <exon e_start="4006" e_stop="4086"/>
            <exon e_start="4173" e_stop="4355"/>
            <exon e_start="5196" e_stop="6309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.497" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75" e_stop="370" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.497" acc_prob="0.999">
            <gDNA_intron_boundary i_start="371" i_stop="526" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="527" e_stop="640" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.844" acc_prob="0.989">
            <gDNA_intron_boundary i_start="641" i_stop="1803" i_length="1163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1804" e_stop="2208" e_length="405"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2707" e_stop="2775" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2891" e_stop="2962" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3384" e_stop="3512" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.891" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4006" e_stop="4086" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4173" e_stop="4355" e_length="183"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="5196" e_stop="6309" e_length="1114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75" stop="370"/>
              <exon start="527" stop="640"/>
              <exon start="1804" stop="1993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91" stop="370"/>
              <exon start="527" stop="640"/>
              <exon start="1804" stop="2208"/>
              <exon start="2707" stop="2775"/>
              <exon start="2891" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4355"/>
              <exon start="5196" stop="6251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="171" stop="370"/>
              <exon start="527" stop="640"/>
              <exon start="1804" stop="2057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2137" stop="2208"/>
              <exon start="2707" stop="2775"/>
              <exon start="2891" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2138" stop="2208"/>
              <exon start="2707" stop="2775"/>
              <exon start="2891" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2171" stop="2208"/>
              <exon start="2707" stop="2775"/>
              <exon start="2891" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4355"/>
              <exon start="5196" stop="5459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2925" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4187" stop="4355"/>
              <exon start="5196" stop="5589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4313" stop="4355"/>
              <exon start="5196" stop="5600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5206" stop="5939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5552" stop="6251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5561" stop="6221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5652" stop="6249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5776" stop="6309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5776" stop="6309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTCTTTGAGTTTACTTTCCTTTCTTTGTTGTTTTCCCCTCAATTTCATATCTTATGAGAGTTATTTGGTGAATGGGGTTGCAAGATTTCTTGTTGAATACAGTAAAAAACTGATCTTTCTTGTTTTTTTCTATCAAGAAAATGTGGGGAGCTGAAAGAAAACAGAGATTCAAGAAAGGAATAGAGTGAAAAATCAAATATTTTTTCTCCCCTCTTGCATTTTTATAGCCTGCTACATTCAATCAGCACAATGAGGAAGCATGGATGGCAACTTCCCTATCATCCTCTCCAG : GTGGTAGCTGTTGCTGTGTTTCTGGCACTGGGATTTGCTTTCTATGTCTTCTTTGCACCTTTTGTGGGAAAGAAATTGTTTCAGTATATTGTGATGGGGCTTTATACTCCTCTT : ATAATTAGTGCATTTGGCTTGTATATCTGGTGCGCTGCTGCTGATCCTGCTGATCCAGGAGTTTTTAGATCCAAGAAGTATATTAAGAAGCTAGACCACGAAAAGCAAGTTCAACTTAAAGAATCTAAATTAGGGTGCGAGACGAATTCTTCTATACAAGATGCTAATGCTGCATCGATTGGGGAAAATGCATCTGGAAAAAGCAACAAAGGAGCTGAACCAGCTGCAGATCACAATGAAACTGAACAGAAAATTACAGCTACTCGTGAACGATCTTTCTCTTCCGGATTGTTGGCTCTACTACCTTGTGCTCTTATCAGCAACTGCACAGGCAGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG : GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG : TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG : CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG : GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG : GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG : TATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAGAAGTGGGTTTCTACTTTAACTAGTTTTTGGGGTGCCTTCACTGTTCTAATGTTGCCATCT</gDNA_template>
            <first_frame> F  F  S  L  S  L  L  S  F  L  C  C  F  P  L  N  F  I  S  Y  E  S  Y  L  V  N  G  V  A  R  F  L  V  E  Y  S  K  K  L  I  F  L  V  F  F  Y  Q  E  N  V  G  S  *  K  K  T  E  I  Q  E  R  N  R  V  K  N  Q  I  F  F  L  P  S  C  I  F  I  A  C  Y  I  Q  S  A  Q  *  G  S  M  D  G  N  F  P  I  I  L  S  R :   W  *  L  L  L  C  F  W  H  W  D  L  L  S  M  S  S  L  H  L  L  W  E  R  N  C  F  S  I  L  *  W  G  F  I  L  L  L :   *  L  V  H  L  A  C  I  S  G  A  L  L  L  I  L  L  I  Q  E  F  L  D  P  R  S  I  L  R  S  *  T  T  K  S  K  F  N  L  K  N  L  N  *  G  A  R  R  I  L  L  Y  K  M  L  M  L  H  R  L  G  K  M  H  L  E  K  A  T  K  E  L  N  Q  L  Q  I  T  M  K  L  N  R  K  L  Q  L  L  V  N  D  L  S  L  P  D  C  W  L  Y  Y  L  V  L  L  S  A  T  A  Q  A  D  M  R  S  L  L  S  N  S  *  V  K  M  A  C  S  T  A  V  C  V  K  *  R :   Y  L  N  T  A  S  I  A  E  Y  V  T  S  A  S  I  S  L  T  I  I  A  G :   G  *  T  T  V  *  G  K  G  T  I  A  S  S  L  R  S  W  F  Q  P  S  C  C :   L  Y  F  S  G  Q  L  E  F  L  Y  *  S  A  A  L  S  R  R  R  N  F  L  R  K  S  P  P  N  *  E  A  V  S  P  L  F  L  L  L  L  *  W :   L  S  V  P  S  W  P  *  *  Q  P  C  H  *  L  N  F  S  S  F  T  Y  F  S  *  R  R :   E  L  A  P  M  T  T  S  L  L  S  E  I  K  S  N  K  E  L  Q  V  S  K  V  H  K  C  L  L  L  A  P  *  L  D  *  A  V  Q  A  P  S  I  L  S  I  E  Q  H  G  A  H  H  L  A  F  L  L  R  I  S :   M  M  *  F  L  L  I  Q  Y  R  S  V  H  L  G  K  G  Q  W  R  M  N  L  S  R  K  R  I  Q  L  P  *  R  L  A  H  G  H  *  H  D  *  M  R  R  M  F  Q  K  L  L  L  K  Q  G  K  N  R  K  F  F  S  Q  W  *  E  T  K  N  L  T  F  L  K  Q  I  A  V  *  E  V  A  G  V  A  W  C  L  G  L  I  T  I  E  G  E  L  V  N  E  L  D  S  L  Q  S  Y  P  L  K  P  *  V  K  F  P  M  I  *  L  K  T  A  E  D  P  C  *  L  S  H  Q  A  V  *  L  P  F  S  L  K  H  G  V  I  S  E  Q  P  E  D  C  P  P  Q  V  L  L  L  L  L  H  L  R  V  V  W  T  L  L  T  F  T  H  S  G  C  H  P  Q  E  L  K  M  L  H  V  L  *  V  T  Y  H  L  E  *  L  F  K  R  I  H  H  C  L  D  Q  L  V  M  D  T  R  H  L  V  G  R  I  V  I  V  C  L  P  E  L  C  K  G  Q  Q  G  G  V  A  F  F  L  V  L  I  N  K  M  I  E  S  E  D  *  W  S  R  L  H  Q  P  R  L  T  S  G  S  I  K  P  P  N  I  L  G  N  S  S  V  S  S  *  S  Y  M  I  C  *  H  F  L  I  C  *  *  C  L  S  S  S  I  Y  H  Q  L  G  L  F  H  C  P  L  S  S  I  F  G  F  L  G  E  R  S  A  V  N  V  *  W  K  K  H  Y  V  Y  S  L  V  L  K  M  Q  S  I  Q  *  S  V  L  A  A  I  T  *  K  W  V  S  T  L  T  S  F  W  G  A  F  T  V  L  M  L  P  S </first_frame>
            <second_frame>  F  S  L  *  V  Y  F  P  F  F  V  V  F  P  S  I  S  Y  L  M  R  V  I  W  *  M  G  L  Q  D  F  L  L  N  T  V  K  N  *  S  F  L  F  F  S  I  K  K  M  W  G  A  E  R  K  Q  R  F  K  K  G  I  E  *  K  I  K  Y  F  F  S  P  L  A  F  L  *  P  A  T  F  N  Q  H  N  E  E  A  W  M  A  T  S  L  S  S  S  P   : G  G  S  C  C  C  V  S  G  T  G  I  C  F  L  C  L  L  C  T  F  C  G  K  E  I  V  S  V  Y  C  D  G  A  L  Y  S  S   : Y  N  *  C  I  W  L  V  Y  L  V  R  C  C  *  S  C  *  S  R  S  F  *  I  Q  E  V  Y  *  E  A  R  P  R  K  A  S  S  T  *  R  I  *  I  R  V  R  D  E  F  F  Y  T  R  C  *  C  C  I  D  W  G  K  C  I  W  K  K  Q  Q  R  S  *  T  S  C  R  S  Q  *  N  *  T  E  N  Y  S  Y  S  *  T  I  F  L  F  R  I  V  G  S  T  T  L  C  S  Y  Q  Q  L  H  R  Q  T  *  G  V  F  S  A  T  V  E  *  R  W  H  V  L  L  Q  F  V  *  S  R   : G  I  *  I  Q  Q  A  L  Q  S  M  *  Q  V  R  R  S  V  *  P  S  L  Q   : V  D  K  Q  L  Y  R  E  K  E  L  S  Q  V  L  C  A  H  G  F  S  P  P  A   : A  Y  T  S  V  V  N  W  N  S  C  T  N  L  L  L  Y  R  E  E  E  I  F  C  G  N  H  L  Q  I  R  K  Q  F  L  H  C  S  F  C  Y  C  S   : G  C  L  Y  H  L  G  H  D  S  N  P  A  T  S  S  T  F  L  L  S  H  T  S  H  K  E   : G  N  *  H  L  *  L  H  H  C  S  Q  R  S  R  A  T  R  S  C  R  S  A  K  S  T  N  V  Y  C  *  L  P  N  W  I  K  Q  C  K  L  L  Q  Y  F  P  S  S  S  M  V  H  T  T  S  P  F  C  *  G  S   : V  *  C  S  S  S  *  Y  S  I  G  Q  F  T  W  E  K  V  N  G  G  *  T  Y  Q  E  K  E  S  S  C  R  E  D  *  P  M  D  T  S  T  I  K  C  G  G  C  F  K  S  C  C  *  S  K  E  K  I  E  N  S  S  A  S  G  E  K  Q  R  T  L  H  S  *  N  K  *  Q  F  R  K  *  R  A  S  H  G  A  *  A  *  *  Q  *  K  E  S  *  *  T  S  *  T  P  C  R  V  T  L  *  N  H  E  *  N  S  Q  *  Y  S  S  K  Q  Q  K  T  H  A  N  *  V  I  K  Q  F  S  S  P  S  A  *  S  T  E  *  F  P  N  N  P  R  T  V  H  L  R  C  C  C  C  F  F  T  *  E  *  F  G  L  S  *  H  S  P  T  P  D  V  I  L  R  S  *  R  C  C  T  S  C  R  S  P  I  I  W  N  D  S  S  K  G  Y  T  I  V  *  I  N  *  *  W  I  R  G  I  W  W  G  G  *  *  S  C  A  Y  P  N  C  A  K  V  N  K  V  E  *  H  S  F  W  F  *  S  T  R  *  *  S  Q  K  I  D  G  P  V  F  I  N  P  G  *  H  Q  E  A  L  S  L  Q  T  Y  L  G  I  L  L  *  A  L  E  A  T  *  S  V  D  I  S  *  F  V  D  D  V  C  P  V  V  Y  T  I  N  L  V  C  S  I  V  H  *  V  Q  F  L  D  F  W  V  R  E  V  L  *  M  S  S  G  K  N  I  M  S  I  L  L  S  S  K  C  R  A  F  N  D  Q  F  L  L  P  S  L  R  S  G  F  L  L  *  L  V  F  G  V  P  S  L  F  *  C  C  H   </second_frame>
            <third_frame>   F  L  F  E  F  T  F  L  S  L  L  F  S  P  Q  F  H  I  L  *  E  L  F  G  E  W  G  C  K  I  S  C  *  I  Q  *  K  T  D  L  S  C  F  F  L  S  R  K  C  G  E  L  K  E  N  R  D  S  R  K  E  *  S  E  K  S  N  I  F  S  P  L  L  H  F  Y  S  L  L  H  S  I  S  T  M  R  K  H  G  W  Q  L  P  Y  H  P  L  Q  :  V  V  A  V  A  V  F  L  A  L  G  F  A  F  Y  V  F  F  A  P  F  V  G  K  K  L  F  Q  Y  I  V  M  G  L  Y  T  P  L  :  I  I  S  A  F  G  L  Y  I  W  C  A  A  A  D  P  A  D  P  G  V  F  R  S  K  K  Y  I  K  K  L  D  H  E  K  Q  V  Q  L  K  E  S  K  L  G  C  E  T  N  S  S  I  Q  D  A  N  A  A  S  I  G  E  N  A  S  G  K  S  N  K  G  A  E  P  A  A  D  H  N  E  T  E  Q  K  I  T  A  T  R  E  R  S  F  S  S  G  L  L  A  L  L  P  C  A  L  I  S  N  C  T  G  R  H  E  E  S  S  Q  Q  Q  L  S  E  D  G  M  F  Y  C  S  L  C  E  V  E  :  V  F  K  Y  S  K  H  C  R  V  C  D  K  C  V  D  Q  F  D  H  H  C  R  :  W  I  N  N  C  I  G  K  R  N  Y  R  K  F  F  A  L  M  V  S  A  L  L  L  :  L  I  L  Q  W  S  T  G  I  L  V  L  I  C  C  F  I  E  K  K  K  F  S  A  E  I  T  S  K  L  G  S  S  F  S  I  V  P  F  V  I  V  V  :  A  V  C  T  I  L  A  M  I  A  T  L  P  L  A  Q  L  F  F  F  H  I  L  L  I  K  K  :  G  I  S  T  Y  D  Y  I  I  A  L  R  D  Q  E  Q  Q  G  V  A  G  Q  Q  S  P  Q  M  S  T  V  S  S  L  T  G  L  S  S  A  S  S  F  N  T  F  H  R  A  A  W  C  T  P  P  R  L  F  V  E  D  Q  :  Y  D  V  V  P  P  D  T  V  S  V  S  S  L  G  K  R  S  M  A  D  E  P  I  K  K  K  N  P  A  A  V  K  I  S  P  W  T  L  A  R  L  N  A  E  D  V  S  K  A  A  A  E  A  R  K  K  S  K  I  L  Q  P  V  V  R  N  K  E  P  Y  I  L  E  T  N  S  S  L  G  S  S  G  R  R  M  V  P  R  L  D  N  N  R  R  R  A  S  K  R  V  R  L  P  A  E  L  P  F  E  T  M  S  K  I  P  N  D  I  A  Q  N  S  R  R  P  M  L  T  E  S  S  S  S  L  A  P  L  Q  L  E  A  R  S  D  F  R  T  T  R  G  L  S  T  S  G  V  V  V  A  S  S  P  E  S  S  L  D  S  P  D  I  H  P  L  R  M  S  S  S  G  V  E  D  A  A  R  L  V  G  H  L  S  S  G  M  T  L  Q  K  D  T  P  L  S  R  S  T  S  D  G  Y  E  A  S  G  G  E  D  S  D  R  V  P  T  R  I  V  Q  R  S  T  R  W  S  S  I  L  F  G  S  D  Q  Q  D  D  R  V  R  R  L  M  V  P  S  S  S  T  Q  A  N  I  R  K  H  *  A  S  K  H  T  W  E  F  F  C  K  L  L  K  L  H  D  L  L  T  F  L  N  L  L  M  M  F  V  Q  *  Y  I  P  S  T  W  S  V  P  L  S  I  E  F  N  F  W  I  F  G  *  E  K  C  C  K  C  L  V  E  K  T  L  C  L  F  S  C  P  Q  N  A  E  H  S  M  I  S  S  C  C  H  H  L  E  V  G  F  Y  F  N  *  F  L  G  C  L  H  C  S  N  V  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="263" stop="370"/>
                    <exon start="527" stop="640"/>
                    <exon start="1804" stop="2208"/>
                    <exon start="2707" stop="2775"/>
                    <exon start="2891" stop="2962"/>
                    <exon start="3384" stop="3512"/>
                    <exon start="4006" stop="4086"/>
                    <exon start="4173" stop="4355"/>
                    <exon start="5196" stop="5993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1956</number_coding_nucleotides>
                  <number_encoded_amino_acids>652</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKSNIFSPLLHFYSLLHSISTMRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKLFQYIVMGLYTPLIISAFGLYIWCAAADPADPGVFRSKKYIKKLDHEKQVQLKESKLGCETNSSIQDANAASIGENASGKSNKGAEPAADHNETEQKITATRERSFSSGLLALLPCALISNCTGRHEESSQQQLSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDQFDHHCRWINNCIGKRNYRKFFALMVSALLLLILQWSTGILVLICCFIEKKKFSAEITSKLGSSFSIVPFVIVVAVCTILAMIATLPLAQLFFFHILLIKKGISTYDYIIALRDQEQQGVAGQQSPQMSTVSSLTGLSSASSFNTFHRAAWCTPPRLFVEDQYDVVPPDTVSVSSLGKRSMADEPIKKKNPAAVKISPWTLARLNAEDVSKAAAEARKKSKILQPVVRNKEPYILETNSSLGSSGRRMVPRLDNNRRRASKRVRLPAELPFETMSKIPNDIAQNSRRPMLTESSSSLAPLQLEARSDFRTTRGLSTSGVVVASSPESSLDSPDIHPLRMSSSGVEDAARLVGHLSSGMTLQKDTPLSRSTSDGYEASGGEDSDRVPTRIVQRSTRWSSILFGSDQQDDRVRRLMVPSSSTQANIRKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7022" PGL_stop="6568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7022" e_stop="6568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="7022" e_stop="6568" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7022" stop="6568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTGTTGCAAAGGAGGTAGAGATGAAAGGTTCTAATGGATTTGAGCAGGTGGTTGAACCTCTTCGACACCATCGAGGTGTAATCACTTTTGGATTTTCAGGAAAGATGATACAGAGAACACTCTGTGCTAATGGTCTAACCATTCCTTGTTTGAATGCTGAAACTCTCAAGGATGCTGTGAGGTTGGCAAGGAGTATAGCACAACGTGGCGATGCCATTGTACTGAGTCCTGGTTGTGCTAGCTTTGACGAGTTCAGAAATTTCGAGCAAAGAGGAAGGATCTTTCAAGAGCTTGCTATCTCTTCAGAGTGACTGACCATCTCTTCCATGTTTTGTTGGTCACTCGAGATGGACTATTTTCGCGAACTTTGCTAGTGCGAGTTGATTCAGATGCCAAAAATTGTAACTTCAATCCTTGTTGAATATTTGAAATATGAAGTTAGTGACTTACTG</gDNA_template>
            <first_frame> V  V  L  Q  R  R  *  R  *  K  V  L  M  D  L  S  R  W  L  N  L  F  D  T  I  E  V  *  S  L  L  D  F  Q  E  R  *  Y  R  E  H  S  V  L  M  V  *  P  F  L  V  *  M  L  K  L  S  R  M  L  *  G  W  Q  G  V  *  H  N  V  A  M  P  L  Y  *  V  L  V  V  L  A  L  T  S  S  E  I  S  S  K  E  E  G  S  F  K  S  L  L  S  L  Q  S  D  *  P  S  L  P  C  F  V  G  H  S  R  W  T  I  F  A  N  F  A  S  A  S  *  F  R  C  Q  K  L  *  L  Q  S  L  L  N  I  *  N  M  K  L  V  T  Y   </first_frame>
            <second_frame>  W  C  C  K  G  G  R  D  E  R  F  *  W  I  *  A  G  G  *  T  S  S  T  P  S  R  C  N  H  F  W  I  F  R  K  D  D  T  E  N  T  L  C  *  W  S  N  H  S  L  F  E  C  *  N  S  Q  G  C  C  E  V  G  K  E  Y  S  T  T  W  R  C  H  C  T  E  S  W  L  C  *  L  *  R  V  Q  K  F  R  A  K  R  K  D  L  S  R  A  C  Y  L  F  R  V  T  D  H  L  F  H  V  L  L  V  T  R  D  G  L  F  S  R  T  L  L  V  R  V  D  S  D  A  K  N  C  N  F  N  P  C  *  I  F  E  I  *  S  *  *  L  T  </second_frame>
            <third_frame>   G  V  A  K  E  V  E  M  K  G  S  N  G  F  E  Q  V  V  E  P  L  R  H  H  R  G  V  I  T  F  G  F  S  G  K  M  I  Q  R  T  L  C  A  N  G  L  T  I  P  C  L  N  A  E  T  L  K  D  A  V  R  L  A  R  S  I  A  Q  R  G  D  A  I  V  L  S  P  G  C  A  S  F  D  E  F  R  N  F  E  Q  R  G  R  I  F  Q  E  L  A  I  S  S  E  *  L  T  I  S  S  M  F  C  W  S  L  E  M  D  Y  F  R  E  L  C  *  C  E  L  I  Q  M  P  K  I  V  T  S  I  L  V  E  Y  L  K  Y  E  V  S  D  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7020" stop="6709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVAKEVEMKGSNGFEQVVEPLRHHRGVITFGFSGKMIQRTLCANGLTIPCLNAETLKDAVRLARSIAQRGDAIVLSPGCASFDEFRNFEQRGRIFQELAISSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13626" PGL_stop="7184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13626" e_stop="12332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13626" e_stop="12332" e_length="1295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="12750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13599" stop="12997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13599" stop="13080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13570" stop="12691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13542" stop="13078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13534" stop="12628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13062" stop="12366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13062" stop="12699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13045" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAAAGGAAATAATACTTGTGTACTGTTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTTGTGTTTTTTCTCGTTGATTGTGATTGTACCGATTCTTCTTTGGCTACAGGTGAATTGGTTATTAGCTTATGTGATAGCAGTGGTTGAATCTAAGTTTGGTTTCGAAGCATTGAGGAGAAGTGCGAATTTGTTAAAGGGGAAGAGATGGATAGCTTCGTACACGATGCTGTTTGACGGGCTTTTAATGGGACTGTTGGTGGTTACTCATTCCATTATTCCAGTCGCGGTGGGTGTTGCCCGTGGTAGCTTGGTGGTGATATTGGCGGTTGTGGCGGGATCTCTTATGATGAATTACCATCTTCTAAAGAATGTAGCTTTGTACATGTATTGTAAAGAACAATTCTTCAATGGTGAAAAGTTGCTATTGGAGAGCGGAGACAAGTTCACCGGAGCTAATGAGTATGTAGACAATGAGAAAAAATCATGCTATTGAGTAAGTTTGTTTAATTTCTCTATAGATTGTGTTGTTAAATTTGGGTTTTTTTAATCGCGTGATGCTTATTTCTTTCCTCTCTTAGAGTCGAGAATCCTTTGGAAACGATCTTTTCTAAAGTAAGATCTCAGTGTATCCTAGAAAAGATAATATTGTTTTAACCACATGCGGTAGTACTATTACCATTGGTATCAAGATATGCATCTTCGAGTGATCAATTGTTTAGTTA</gDNA_template>
            <first_frame> P  K  G  N  N  T  C  V  L  F  Y  L  Q  F  S  H  T  S  W  A  A  A  P  A  E  A  I  V  V  V  V  V  F  F  F  S  L  N  S  D  V  Y  S  Y  R  K  W  *  P  T  G  R  D  P  E  T  N  S  P  H  N  E  V  S  P  S  T  S  P  W  T  F  N  S  L  L  L  T  I  V  H  S  H  R  I  S  F  F  P  P  R  P  L  S  S  R  L  Q  F  L  P  T  *  L  S  L  P  S  H  F  Q  F  R  N  C  L  T  H  T  I  H  S  L  Y  I  P  I  L  P  L  C  R  S  H  Y  Y  T  Q  C  C  S  S  I  V  R  *  T  D  Q  S  S  F  L  C  *  I  Y  *  K  F  L  L  S  S  S  L  N  F  Y  P  L  S  Y  H  S  H  F  N  C  S  V  F  R  Y  S  R  S  F  P  S  P  N  S  S  I  Y  Q  I  N  *  T  Q  I  R  P  E  S  L  F  I  F  V  F  F  L  V  D  C  D  C  T  D  S  S  L  A  T  G  E  L  V  I  S  L  C  D  S  S  G  *  I  *  V  W  F  R  S  I  E  E  K  C  E  F  V  K  G  E  E  M  D  S  F  V  H  D  A  V  *  R  A  F  N  G  T  V  G  G  Y  S  F  H  Y  S  S  R  G  G  C  C  P  W  *  L  G  G  D  I  G  G  C  G  G  I  S  Y  D  E  L  P  S  S  K  E  C  S  F  V  H  V  L  *  R  T  I  L  Q  W  *  K  V  A  I  G  E  R  R  Q  V  H  R  S  *  *  V  C  R  Q  *  E  K  I  M  L  L  S  K  F  V  *  F  L  Y  R  L  C  C  *  I  W  V  F  L  I  A  *  C  L  F  L  S  S  L  R  V  E  N  P  L  E  T  I  F  S  K  V  R  S  Q  C  I  L  E  K  I  I  L  F  *  P  H  A  V  V  L  L  P  L  V  S  R  Y  A  S  S  S  D  Q  L  F  S   </first_frame>
            <second_frame>  Q  K  E  I  I  L  V  Y  C  F  T  F  S  F  H  T  H  L  G  Q  Q  L  L  L  K  Q  L  *  W  L  S  S  S  S  S  H  L  T  P  M  S  T  P  T  E  N  G  S  Q  R  V  E  I  L  K  P  I  H  R  I  M  K  S  H  P  R  H  L  H  G  L  S  I  L  F  F  L  P  L  F  T  L  I  V  Y  P  S  F  H  L  A  L  F  H  P  D  Y  N  F  Y  Q  L  D  S  H  Y  L  P  I  S  S  F  E  I  V  L  P  I  L  Y  T  L  C  I  S  L  F  Y  L  C  A  V  A  T  I  T  H  S  A  A  Q  A  L  C  D  K  P  I  N  L  L  S  S  V  K  S  I  R  N  S  F  F  P  L  L  S  T  F  I  L  S  H  T  I  L  I  S  I  A  L  F  F  V  I  V  V  V  F  L  V  Q  I  L  R  S  I  R  L  I  E  L  K  Y  D  L  N  H  F  L  Y  L  C  F  F  S  L  I  V  I  V  P  I  L  L  W  L  Q  V  N  W  L  L  A  Y  V  I  A  V  V  E  S  K  F  G  F  E  A  L  R  R  S  A  N  L  L  K  G  K  R  W  I  A  S  Y  T  M  L  F  D  G  L  L  M  G  L  L  V  V  T  H  S  I  I  P  V  A  V  G  V  A  R  G  S  L  V  V  I  L  A  V  V  A  G  S  L  M  M  N  Y  H  L  L  K  N  V  A  L  Y  M  Y  C  K  E  Q  F  F  N  G  E  K  L  L  L  E  S  G  D  K  F  T  G  A  N  E  Y  V  D  N  E  K  K  S  C  Y  *  V  S  L  F  N  F  S  I  D  C  V  V  K  F  G  F  F  *  S  R  D  A  Y  F  F  P  L  L  E  S  R  I  L  W  K  R  S  F  L  K  *  D  L  S  V  S  *  K  R  *  Y  C  F  N  H  M  R  *  Y  Y  Y  H  W  Y  Q  D  M  H  L  R  V  I  N  C  L  V  </second_frame>
            <third_frame>   K  R  K  *  Y  L  C  T  V  L  P  S  V  F  T  H  I  L  G  S  S  S  C  *  S  N  C  S  G  C  R  L  L  L  L  T  *  L  R  C  L  L  L  P  K  M  V  A  N  G  *  R  S  *  N  Q  F  T  A  *  *  S  L  T  L  D  I  S  M  D  F  Q  F  S  S  S  Y  H  C  S  L  S  S  Y  I  L  L  S  T  S  P  S  F  I  P  T  T  I  S  T  N  L  T  L  T  T  F  P  F  P  V  S  K  L  S  Y  P  Y  Y  T  L  S  V  Y  P  Y  F  T  S  V  P  *  P  L  L  H  T  V  L  L  K  H  C  A  I  N  R  S  I  F  F  P  L  L  N  L  L  E  I  P  S  F  L  F  S  Q  L  L  S  S  L  I  P  F  S  F  Q  L  L  C  F  S  L  *  S  *  F  S  *  S  K  F  F  D  L  S  D  *  L  N  S  N  T  T  *  I  T  F  Y  I  C  V  F  S  R  *  L  *  L  Y  R  F  F  F  G  Y  R  *  I  G  Y  *  L  M  *  *  Q  W  L  N  L  S  L  V  S  K  H  *  G  E  V  R  I  C  *  R  G  R  D  G  *  L  R  T  R  C  C  L  T  G  F  *  W  D  C  W  W  L  L  I  P  L  F  Q  S  R  W  V  L  P  V  V  A  W  W  *  Y  W  R  L  W  R  D  L  L  *  *  I  T  I  F  *  R  M  *  L  C  T  C  I  V  K  N  N  S  S  M  V  K  S  C  Y  W  R  A  E  T  S  S  P  E  L  M  S  M  *  T  M  R  K  N  H  A  I  E  *  V  C  L  I  S  L  *  I  V  L  L  N  L  G  F  F  N  R  V  M  L  I  S  F  L  S  *  S  R  E  S  F  G  N  D  L  F  *  S  K  I  S  V  Y  P  R  K  D  N  I  V  L  T  T  C  G  S  T  I  T  I  G  I  K  I  C  I  F  E  *  S  I  V  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13541" stop="12561"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLSSSSSHLTPMSTPTENGSQRVEILKPIHRIMKSHPRHLHGLSILFFLPLFTLIVYPSFHLALFHPDYNFYQLDSHYLPISSFEIVLPILYTLCISLFYLCAVATITHSAAQALCDKPINLLSSVKSIRNSFFPLLSTFILSHTILISIALFFVIVVVFLVQILRSIRLIELKYDLNHFLYLCFFSLIVIVPILLWLQVNWLLAYVIAVVESKFGFEALRRSANLLKGKRWIASYTMLFDGLLMGLLVVTHSIIPVAVGVARGSLVVILAVVAGSLMMNYHLLKNVALYMYCKEQFFNGEKLLLESGDKFTGANEYVDNEKKSCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13599" e_stop="12994"/>
            <exon e_start="8230" e_stop="7184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13599" e_stop="12994" e_length="606"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12993" i_stop="8231" i_length="4763"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="8230" e_stop="7184" e_length="1047"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13599" stop="12997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13599" stop="13080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13542" stop="13078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13059" stop="12994"/>
              <exon start="8230" stop="7638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13059" stop="12994"/>
              <exon start="8230" stop="7642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7829" stop="7184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTACCTTCAGTTTTCACACACATCTTGGGCAGCAGCTCCTGCTGAAGCAATTGTAGTGGTTGTCGTCTTCTTCTTCTCACTTAACTCCGATGTCTACTCCTACCGAAAATGGTAGCCAACGGGTAGAGATCCTGAAACCAATTCACCGCATAATGAAGTCTCACCCTCGACATCTCCATGGACTTTCAATTCTCTTCTTCTTACCATTGTTCACTCTCATCGTATATCCTTCTTTCCACCTCGCCCTCTTTCATCCCGACTACAATTTCTACCAACTTGACTCTCACTACCTTCCCATTTCCAGTTTCGAAATTGTCTTACCCATACTATACACTCTCTGTATATCCCTATTTTACCTCTGTGCCGTAGCCACTATTACACACAGTGCTGCTCAAGCATTGTGCGATAAACCGATCAATCTTCTTTCCTCTGTTAAATCTATTAGAAATTCCTTCTTTCCTCTTCTCTCAACTTTTATCCTCTCTCATACCATTCTCATTTCAATTGCTCTGTTTTTCGTTATAGTCGTAGTTTTCCTAGTCCAAATTCTTCGATCTATCAGATTAATTGAACTCAAATACGACCTGAATCACTTTTTATATTT : TCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGATGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCTGACCGGAGATCTTTAGAGGTGGCAGTGGTGGAGGTGAGTAGTTATCAGCTGGAAATCCCACCGAAATACTTTTGTCCTTCGGTTGCTGTGATACTAAATCTTACTCCTGATCATCTTGAACGACACCACACGATGAAAAACTATGCTGCAATCAAGTGTCGTATCTTTTCTCAGATGAGAGGGAAGAAAATTGGTGTTGTTCCACTTGGAAATCCATATCTGGATGAAGCAGTTATGGATCATGCGGATGGCGTTAGTCTTGCTTGGATTGGAGGTTCTCCTGGTGTGAACGTTGATGTGGAGGCGAAGATTGCTGAGTTAAAGCTTCCTACAATAGACTGTCTTTCACAATTACAATTGAGTGAGCTGAAGGCAGTTGGGAAGCACAATTACACCAATGCTGCAGTGGCTGCATTATCAGTTCTTGGGTTGGATATTGAGATCAAAGCTGAAGCTTT</gDNA_template>
            <first_frame> F  Y  L  Q  F  S  H  T  S  W  A  A  A  P  A  E  A  I  V  V  V  V  V  F  F  F  S  L  N  S  D  V  Y  S  Y  R  K  W  *  P  T  G  R  D  P  E  T  N  S  P  H  N  E  V  S  P  S  T  S  P  W  T  F  N  S  L  L  L  T  I  V  H  S  H  R  I  S  F  F  P  P  R  P  L  S  S  R  L  Q  F  L  P  T  *  L  S  L  P  S  H  F  Q  F  R  N  C  L  T  H  T  I  H  S  L  Y  I  P  I  L  P  L  C  R  S  H  Y  Y  T  Q  C  C  S  S  I  V  R  *  T  D  Q  S  S  F  L  C  *  I  Y  *  K  F  L  L  S  S  S  L  N  F  Y  P  L  S  Y  H  S  H  F  N  C  S  V  F  R  Y  S  R  S  F  P  S  P  N  S  S  I  Y  Q  I  N  *  T  Q  I  R  P  E  S  L  F  I  F  :  S  I  Y  Q  I  N  *  T  Q  N  A  *  S  F  K  L  *  S  E  L  E  A  C  *  L  T  Y  K  N  S  I  L  L  P  *  T  R  P  E  G  T  K  S  C  Y  S  W  P  W  K  I  R  F  C  C  Y  K  A  C  S  C  *  R  C  F  S  Y  S  H  *  S  K  *  D  L  R  I  N  I  S  H  K  *  W  F  I  R  S  E  K  C  G  F  E  D  I  F  W  *  F  *  *  *  D  S  E  R  G  G  C  S  C  R  F  S  W  S  S  T  G  K  I  W  N  S  I  N  D  M  F  G  E  G  S  T  L  R  V  R  F  C  C  A  N  Y  S  E  L  Y  *  G  F  S  S  Y  W  N  *  W  E  V  Y  C  Y  H  I  C  R  T  D  T  *  S  F  G  F  R  D  V  C  W  W  Q  P  W  S  S  T  L  R  C  C  F  S  F  A  *  P  E  I  F  R  G  G  S  G  G  G  E  *  L  S  A  G  N  P  T  E  I  L  L  S  F  G  C  C  D  T  K  S  Y  S  *  S  S  *  T  T  P  H  D  E  K  L  C  C  N  Q  V  S  Y  L  F  S  D  E  R  E  E  N  W  C  C  S  T  W  K  S  I  S  G  *  S  S  Y  G  S  C  G  W  R  *  S  C  L  D  W  R  F  S  W  C  E  R  *  C  G  G  E  D  C  *  V  K  A  S  Y  N  R  L  S  F  T  I  T  I  E  *  A  E  G  S  W  E  A  Q  L  H  Q  C  C  S  G  C  I  I  S  S  W  V  G  Y  *  D  Q  S  *  S  F </first_frame>
            <second_frame>  F  T  F  S  F  H  T  H  L  G  Q  Q  L  L  L  K  Q  L  *  W  L  S  S  S  S  S  H  L  T  P  M  S  T  P  T  E  N  G  S  Q  R  V  E  I  L  K  P  I  H  R  I  M  K  S  H  P  R  H  L  H  G  L  S  I  L  F  F  L  P  L  F  T  L  I  V  Y  P  S  F  H  L  A  L  F  H  P  D  Y  N  F  Y  Q  L  D  S  H  Y  L  P  I  S  S  F  E  I  V  L  P  I  L  Y  T  L  C  I  S  L  F  Y  L  C  A  V  A  T  I  T  H  S  A  A  Q  A  L  C  D  K  P  I  N  L  L  S  S  V  K  S  I  R  N  S  F  F  P  L  L  S  T  F  I  L  S  H  T  I  L  I  S  I  A  L  F  F  V  I  V  V  V  F  L  V  Q  I  L  R  S  I  R  L  I  E  L  K  Y  D  L  N  H  F  L  Y  F :   Q  S  I  R  L  I  E  L  K  M  L  K  A  S  S  F  K  V  S  S  K  L  V  N  S  H  T  K  I  Q  S  C  Y  L  E  Q  D  L  K  G  Q  K  V  A  I  V  G  L  G  K  S  G  S  A  A  T  K  L  A  L  A  R  G  A  S  V  T  A  I  D  Q  N  E  I  S  E  S  T  F  H  I  N  N  G  L  L  D  L  K  N  A  D  L  K  T  F  F  G  N  F  D  D  K  I  L  K  E  A  D  V  V  V  V  S  P  G  V  P  L  E  R  Y  G  I  Q  S  M  I  C  S  G  K  E  V  L  S  E  L  D  F  A  A  Q  I  I  P  S  Y  T  K  V  L  A  V  T  G  T  N  G  K  S  T  V  T  T  F  A  G  Q  I  L  N  H  L  G  F  E  T  F  V  G  G  N  L  G  V  P  L  S  D  A  V  F  H  S  P  D  R  R  S  L  E  V  A  V  V  E  V  S  S  Y  Q  L  E  I  P  P  K  Y  F  C  P  S  V  A  V  I  L  N  L  T  P  D  H  L  E  R  H  H  T  M  K  N  Y  A  A  I  K  C  R  I  F  S  Q  M  R  G  K  K  I  G  V  V  P  L  G  N  P  Y  L  D  E  A  V  M  D  H  A  D  G  V  S  L  A  W  I  G  G  S  P  G  V  N  V  D  V  E  A  K  I  A  E  L  K  L  P  T  I  D  C  L  S  Q  L  Q  L  S  E  L  K  A  V  G  K  H  N  Y  T  N  A  A  V  A  A  L  S  V  L  G  L  D  I  E  I  K  A  E  A   </second_frame>
            <third_frame>   L  P  S  V  F  T  H  I  L  G  S  S  S  C  *  S  N  C  S  G  C  R  L  L  L  L  T  *  L  R  C  L  L  L  P  K  M  V  A  N  G  *  R  S  *  N  Q  F  T  A  *  *  S  L  T  L  D  I  S  M  D  F  Q  F  S  S  S  Y  H  C  S  L  S  S  Y  I  L  L  S  T  S  P  S  F  I  P  T  T  I  S  T  N  L  T  L  T  T  F  P  F  P  V  S  K  L  S  Y  P  Y  Y  T  L  S  V  Y  P  Y  F  T  S  V  P  *  P  L  L  H  T  V  L  L  K  H  C  A  I  N  R  S  I  F  F  P  L  L  N  L  L  E  I  P  S  F  L  F  S  Q  L  L  S  S  L  I  P  F  S  F  Q  L  L  C  F  S  L  *  S  *  F  S  *  S  K  F  F  D  L  S  D  *  L  N  S  N  T  T  *  I  T  F  Y  I   : F  N  L  S  D  *  L  N  S  K  C  L  K  L  Q  A  L  K  *  A  R  S  L  L  T  H  I  Q  K  F  N  P  A  T  L  N  K  T  *  R  D  K  K  L  L  *  L  A  L  E  N  Q  V  L  L  L  Q  S  L  L  L  L  E  V  L  Q  L  Q  P  L  I  K  M  R  S  Q  N  Q  H  F  T  *  I  M  V  Y  *  I  *  K  M  R  I  *  R  H  F  L  V  I  L  M  I  R  F  *  K  R  R  M  *  L  S  F  L  L  E  F  H  W  K  D  M  E  F  N  Q  *  Y  V  R  G  R  K  Y  S  Q  S  *  I  L  L  R  K  L  F  R  V  I  L  R  F  *  Q  L  L  E  L  M  G  S  L  L  L  P  H  L  Q  D  R  Y  L  I  I  W  V  S  R  R  L  L  V  A  T  L  E  F  H  S  Q  M  L  F  F  I  R  L  T  G  D  L  *  R  W  Q  W  W  R  *  V  V  I  S  W  K  S  H  R  N  T  F  V  L  R  L  L  *  Y  *  I  L  L  L  I  I  L  N  D  T  T  R  *  K  T  M  L  Q  S  S  V  V  S  F  L  R  *  E  G  R  K  L  V  L  F  H  L  E  I  H  I  W  M  K  Q  L  W  I  M  R  M  A  L  V  L  L  G  L  E  V  L  L  V  *  T  L  M  W  R  R  R  L  L  S  *  S  F  L  Q  *  T  V  F  H  N  Y  N  *  V  S  *  R  Q  L  G  S  T  I  T  P  M  L  Q  W  L  H  Y  Q  F  L  G  W  I  L  R  S  K  L  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13541" stop="12994"/>
                    <exon start="8230" stop="7186"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLSSSSSHLTPMSTPTENGSQRVEILKPIHRIMKSHPRHLHGLSILFFLPLFTLIVYPSFHLALFHPDYNFYQLDSHYLPISSFEIVLPILYTLCISLFYLCAVATITHSAAQALCDKPINLLSSVKSIRNSFFPLLSTFILSHTILISIALFFVIVVVFLVQILRSIRLIELKYDLNHFLYFQSIRLIELKMLKASSFKVSSKLVNSHTKIQSCYLEQDLKGQKVAIVGLGKSGSAATKLALARGASVTAIDQNEISESTFHINNGLLDLKNADLKTFFGNFDDKILKEADVVVVSPGVPLERYGIQSMICSGKEVLSELDFAAQIIPSYTKVLAVTGTNGKSTVTTFAGQILNHLGFETFVGGNLGVPLSDAVFHSPDRRSLEVAVVEVSSYQLEIPPKYFCPSVAVILNLTPDHLERHHTMKNYAAIKCRIFSQMRGKKIGVVPLGNPYLDEAVMDHADGVSLAWIGGSPGVNVDVEAKIAELKLPTIDCLSQLQLSELKAVGKHNYTNAAVAALSVLGLDIEIKAEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8273" e_stop="7184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="8273" e_stop="7184" e_length="1090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8273" stop="7627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7829" stop="7184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTTCACAGCCATCATCTTCTTCCCTTAGTCCAAATTCTTCAATCTATCAGATTAATTGAACTCAAAATGCTTAAAGCTTCAAGCTTTAAAGTGAGCTCGAAGCTTGTTAACTCACATACAAAAATTCAATCCTGCTACCTTGAACAAGACCTGAAGGGACAAAAAGTTGCTATAGTTGGCCTTGGAAAATCAGGTTCTGCTGCTACAAAGCTTGCTCTTGCTAGAGGTGCTTCAGTTACAGCCATTGATCAAAATGAGATCTCAGAATCAACATTTCACATAAATAATGGTTTATTAGATCTGAAAAATGCGGATTTGAAGACATTTTTTGGTAATTTTGATGATAAGATTCTGAAAGAGGCGGATGTAGTTGTCGTTTCTCCTGGAGTTCCACTGGAAAGATATGGAATTCAATCAATGATATGTTCGGGGAAGGAAGTACTCTCAGAGTTAGATTTTGCTGCGCAAATTATTCCGAGTTATACTAAGGTTTTAGCAGTTACTGGAACTAATGGGAAGTCTACTGTTACCACATTTGCAGGACAGATACTTAATCATTTGGGTTTCGAGACGTTTGTTGGTGGCAACCTTGGAGTTCCACTCTCAGATGCTGTTTTTCATTCGCCTGACCGGAGATCTTTAGAGGTGGCAGTGGTGGAGGTGAGTAGTTATCAGCTGGAAATCCCACCGAAATACTTTTGTCCTTCGGTTGCTGTGATACTAAATCTTACTCCTGATCATCTTGAACGACACCACACGATGAAAAACTATGCTGCAATCAAGTGTCGTATCTTTTCTCAGATGAGAGGGAAGAAAATTGGTGTTGTTCCACTTGGAAATCCATATCTGGATGAAGCAGTTATGGATCATGCGGATGGCGTTAGTCTTGCTTGGATTGGAGGTTCTCCTGGTGTGAACGTTGATGTGGAGGCGAAGATTGCTGAGTTAAAGCTTCCTACAATAGACTGTCTTTCACAATTACAATTGAGTGAGCTGAAGGCAGTTGGGAAGCACAATTACACCAATGCTGCAGTGGCTGCATTATCAGTTCTTGGGTTGGATATTGAGATCAAAGCTGAAGCTTT</gDNA_template>
            <first_frame> P  N  F  T  A  I  I  F  F  P  *  S  K  F  F  N  L  S  D  *  L  N  S  K  C  L  K  L  Q  A  L  K  *  A  R  S  L  L  T  H  I  Q  K  F  N  P  A  T  L  N  K  T  *  R  D  K  K  L  L  *  L  A  L  E  N  Q  V  L  L  L  Q  S  L  L  L  L  E  V  L  Q  L  Q  P  L  I  K  M  R  S  Q  N  Q  H  F  T  *  I  M  V  Y  *  I  *  K  M  R  I  *  R  H  F  L  V  I  L  M  I  R  F  *  K  R  R  M  *  L  S  F  L  L  E  F  H  W  K  D  M  E  F  N  Q  *  Y  V  R  G  R  K  Y  S  Q  S  *  I  L  L  R  K  L  F  R  V  I  L  R  F  *  Q  L  L  E  L  M  G  S  L  L  L  P  H  L  Q  D  R  Y  L  I  I  W  V  S  R  R  L  L  V  A  T  L  E  F  H  S  Q  M  L  F  F  I  R  L  T  G  D  L  *  R  W  Q  W  W  R  *  V  V  I  S  W  K  S  H  R  N  T  F  V  L  R  L  L  *  Y  *  I  L  L  L  I  I  L  N  D  T  T  R  *  K  T  M  L  Q  S  S  V  V  S  F  L  R  *  E  G  R  K  L  V  L  F  H  L  E  I  H  I  W  M  K  Q  L  W  I  M  R  M  A  L  V  L  L  G  L  E  V  L  L  V  *  T  L  M  W  R  R  R  L  L  S  *  S  F  L  Q  *  T  V  F  H  N  Y  N  *  V  S  *  R  Q  L  G  S  T  I  T  P  M  L  Q  W  L  H  Y  Q  F  L  G  W  I  L  R  S  K  L  K  L  </first_frame>
            <second_frame>  P  I  S  Q  P  S  S  S  S  L  S  P  N  S  S  I  Y  Q  I  N  *  T  Q  N  A  *  S  F  K  L  *  S  E  L  E  A  C  *  L  T  Y  K  N  S  I  L  L  P  *  T  R  P  E  G  T  K  S  C  Y  S  W  P  W  K  I  R  F  C  C  Y  K  A  C  S  C  *  R  C  F  S  Y  S  H  *  S  K  *  D  L  R  I  N  I  S  H  K  *  W  F  I  R  S  E  K  C  G  F  E  D  I  F  W  *  F  *  *  *  D  S  E  R  G  G  C  S  C  R  F  S  W  S  S  T  G  K  I  W  N  S  I  N  D  M  F  G  E  G  S  T  L  R  V  R  F  C  C  A  N  Y  S  E  L  Y  *  G  F  S  S  Y  W  N  *  W  E  V  Y  C  Y  H  I  C  R  T  D  T  *  S  F  G  F  R  D  V  C  W  W  Q  P  W  S  S  T  L  R  C  C  F  S  F  A  *  P  E  I  F  R  G  G  S  G  G  G  E  *  L  S  A  G  N  P  T  E  I  L  L  S  F  G  C  C  D  T  K  S  Y  S  *  S  S  *  T  T  P  H  D  E  K  L  C  C  N  Q  V  S  Y  L  F  S  D  E  R  E  E  N  W  C  C  S  T  W  K  S  I  S  G  *  S  S  Y  G  S  C  G  W  R  *  S  C  L  D  W  R  F  S  W  C  E  R  *  C  G  G  E  D  C  *  V  K  A  S  Y  N  R  L  S  F  T  I  T  I  E  *  A  E  G  S  W  E  A  Q  L  H  Q  C  C  S  G  C  I  I  S  S  W  V  G  Y  *  D  Q  S  *  S  F </second_frame>
            <third_frame>   Q  F  H  S  H  H  L  L  P  L  V  Q  I  L  Q  S  I  R  L  I  E  L  K  M  L  K  A  S  S  F  K  V  S  S  K  L  V  N  S  H  T  K  I  Q  S  C  Y  L  E  Q  D  L  K  G  Q  K  V  A  I  V  G  L  G  K  S  G  S  A  A  T  K  L  A  L  A  R  G  A  S  V  T  A  I  D  Q  N  E  I  S  E  S  T  F  H  I  N  N  G  L  L  D  L  K  N  A  D  L  K  T  F  F  G  N  F  D  D  K  I  L  K  E  A  D  V  V  V  V  S  P  G  V  P  L  E  R  Y  G  I  Q  S  M  I  C  S  G  K  E  V  L  S  E  L  D  F  A  A  Q  I  I  P  S  Y  T  K  V  L  A  V  T  G  T  N  G  K  S  T  V  T  T  F  A  G  Q  I  L  N  H  L  G  F  E  T  F  V  G  G  N  L  G  V  P  L  S  D  A  V  F  H  S  P  D  R  R  S  L  E  V  A  V  V  E  V  S  S  Y  Q  L  E  I  P  P  K  Y  F  C  P  S  V  A  V  I  L  N  L  T  P  D  H  L  E  R  H  H  T  M  K  N  Y  A  A  I  K  C  R  I  F  S  Q  M  R  G  K  K  I  G  V  V  P  L  G  N  P  Y  L  D  E  A  V  M  D  H  A  D  G  V  S  L  A  W  I  G  G  S  P  G  V  N  V  D  V  E  A  K  I  A  E  L  K  L  P  T  I  D  C  L  S  Q  L  Q  L  S  E  L  K  A  V  G  K  H  N  Y  T  N  A  A  V  A  A  L  S  V  L  G  L  D  I  E  I  K  A  E  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8271" stop="7186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFHSHHLLPLVQILQSIRLIELKMLKASSFKVSSKLVNSHTKIQSCYLEQDLKGQKVAIVGLGKSGSAATKLALARGASVTAIDQNEISESTFHINNGLLDLKNADLKTFFGNFDDKILKEADVVVVSPGVPLERYGIQSMICSGKEVLSELDFAAQIIPSYTKVLAVTGTNGKSTVTTFAGQILNHLGFETFVGGNLGVPLSDAVFHSPDRRSLEVAVVEVSSYQLEIPPKYFCPSVAVILNLTPDHLERHHTMKNYAAIKCRIFSQMRGKKIGVVPLGNPYLDEAVMDHADGVSLAWIGGSPGVNVDVEAKIAELKLPTIDCLSQLQLSELKAVGKHNYTNAAVAALSVLGLDIEIKAEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27775" PGL_stop="30264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27775" e_stop="27846"/>
            <exon e_start="28019" e_stop="28111"/>
            <exon e_start="28205" e_stop="28304"/>
            <exon e_start="28394" e_stop="28772"/>
            <exon e_start="30091" e_stop="30264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.845" e_score="0.957"/>
          <exon-intron don_prob="0.935" acc_prob="0.000" e_score="0.960"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="27775" e_stop="27846" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27847" i_stop="28018" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="28019" e_stop="28111" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.845">
            <gDNA_intron_boundary i_start="28112" i_stop="28204" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="28205" e_stop="28304" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28305" i_stop="28393" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="28394" e_stop="28772" e_length="379"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28773" i_stop="30090" i_length="1318"/>
          </intron>
          <exon e_serial="5" e_score="0.920">
            <gDNA_exon_boundary e_start="30091" e_stop="30264" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="27846"/>
              <exon start="28019" stop="28111"/>
              <exon start="28205" stop="28304"/>
              <exon start="28394" stop="28772"/>
              <exon start="30091" stop="30264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTACTCAAATATTAGAATTCTGAAAAATTCAAG : AAAATGTCTGAAACAAATGCAAAGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG : GAGAAAGATAAGGAGACAGTATCATCTAAGGATATCTTTGTGGTTACAAGAACAAGAAAACCTGGGCGATCGTACAAGGCCTCAAATGAAGATACTACTA : TAGGCTAAAATGGAGCAAATTGAAAAACAAATAAGCATAAATGGTGAGTTTGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTGGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGGAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAAATGTTATTGCACAACTTAAGTATGCGGGATTAATTGATCCTAACATATTGGCAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAG : GTGACGAAATCGAAGAAGGCAATGAAAGCAATAGTGAAGACTTAACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATGTTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGAATGCTATAAAATGATTTGTACATTTT</gDNA_template>
            <first_frame> K  K  P  G  H  I  P  E  C  Q  F  R  E  L  L  K  Y  *  N  S  E  K  F  K  :  K  M  S  E  T  N  A  K  N  R  K  K  L  M  N  P  H  T  A  G  K  K  S  F  A  L  V  R  N  K  L  :  E  K  D  K  E  T  V  S  S  K  D  I  F  V  V  T  R  T  R  K  P  G  R  S  Y  K  A  S  N  E  D  T  T   : I  G  *  N  G  A  N  *  K  T  N  K  H  K  W  *  V  C  *  C  I  F  K  R  H  G  S  *  T  S  G  T  S  K  T  I  W  R  R  S  Y  K  D  Y  F  E  K  K  S  W  Q  L  G  I  N  F  K  C  N  N  *  W  N  A  G  N  A  R  E  D  A  E  N  G  E  T  N  G  G  T  K  E  N  C  A  T  R  S  Y  C  K  C  Y  C  T  T  *  V  C  G  I  N  *  S  *  H  I  G  S  I  V  D  S  F  T  K  R  I  Y  F  C  S  R  G  *  T  R :   *  R  N  R  R  R  Q  *  K  Q  *  *  R  L  N  I  G  A  E  V  Y  I  D  V  N  F  I  D  V  L  E  I  I  C  F  *  R  L  K  I  L  W  H  V  F  H  L  F  *  M  L  *  N  D  L  Y  I   </first_frame>
            <second_frame>  K  S  L  V  I  F  Q  N  V  N  L  E  S  Y  S  N  I  R  I  L  K  N  S  R :   K  C  L  K  Q  M  Q  R  I  E  K  N  *  *  I  H  T  L  L  A  K  R  V  S  L  *  F  V  I  S  W :   R  K  I  R  R  Q  Y  H  L  R  I  S  L  W  L  Q  E  Q  E  N  L  G  D  R  T  R  P  Q  M  K  I  L  L  :  *  A  K  M  E  Q  I  E  K  Q  I  S  I  N  G  E  F  V  D  A  F  S  S  V  M  G  P  E  H  P  G  R  L  R  L  Y  G  A  G  V  T  K  T  T  L  K  K  K  V  G  N  W  E  S  T  L  S  A  T  T  D  G  M  Q  E  M  Q  E  R  M  Q  K  M  E  K  Q  M  E  E  Q  K  K  I  V  R  Q  E  V  I  A  N  V  I  A  Q  L  K  Y  A  G  L  I  D  P  N  I  L  A  A  L  S  T  P  S  P  R  E  S  T  S  V  Q  G  A  K  Q   : G  D  E  I  E  E  G  N  E  S  N  S  E  D  L  T  *  E  L  K  Y  I  L  M  *  T  L  L  M  F  *  K  S  Y  V  F  E  D  *  K  F  Y  G  M  C  F  T  F  F  E  C  Y  K  M  I  C  T  F  </second_frame>
            <third_frame>   K  A  W  S  Y  S  R  M  S  I  *  R  A  T  Q  I  L  E  F  *  K  I  Q   : E  N  V  *  N  K  C  K  E  S  K  K  T  D  E  S  T  H  C  W  Q  K  E  F  R  F  S  S  *  *  A   : G  E  R  *  G  D  S  I  I  *  G  Y  L  C  G  Y  K  N  K  K  T  W  A  I  V  Q  G  L  K  *  R  Y  Y  Y :   R  L  K  W  S  K  L  K  N  K  *  A  *  M  V  S  L  L  M  H  F  Q  A  S  W  V  L  N  I  R  D  V  *  D  Y  M  A  Q  E  L  Q  R  L  L  *  K  K  K  L  A  I  G  N  Q  L  *  V  Q  Q  L  M  E  C  R  K  C  K  R  G  C  R  K  W  R  N  K  W  R  N  K  R  K  L  C  D  K  K  L  L  Q  M  L  L  H  N  L  S  M  R  D  *  L  I  L  T  Y  W  Q  H  C  R  L  L  H  Q  E  N  L  L  L  F  K  G  L  N  K  :  V  T  K  S  K  K  A  M  K  A  I  V  K  T  *  H  R  S  *  S  I  Y  *  C  K  L  Y  *  C  S  R  N  H  M  F  L  K  I  E  N  S  M  A  C  V  S  P  F  L  N  A  I  K  *  F  V  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28397" stop="28772"/>
                    <exon start="30091" stop="30140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMEQIEKQISINGEFVDAFSSVMGPEHPGRLRLYGAGVTKTTLKKKVGNWESTLSATTDGMQEMQERMQKMEKQMEEQKKIVRQEVIANVIAQLKYAGLIDPNILAALSTPSPRESTSVQGAKQGDEIEEGNESNSEDLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27829" stop="27846"/>
                    <exon start="28019" stop="28111"/>
                    <exon start="28205" stop="28304"/>
                    <exon start="28394" stop="28401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSEKFKKMSETNAKNRKKLMNPHTAGKKSFALVRNKLEKDKETVSSKDIFVVTRTRKPGRSYKASNEDTTIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40137" PGL_stop="39433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40137" e_stop="39433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="40137" e_stop="39433" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40137" stop="39433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40105" stop="39853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTTCATCAGAAAATGGATGTAGCTTATGGAATGAAATCATTGAATCAACCAGAGCAATATTCAGATCTCATGTTCGCCATTTTCATGCTATTTCAATCCTATTCCTCTTCCCTATCATTCTCTCTCTAATTCTCTATCCTTCTTTCGAACTTGCCATATTTCACCCCGATTATCATTTCACTAGCTATGCTCAACTTCAATTTCCTCAACTTTTCGCAATTTCAAGTTTCGAAACTATTCTACTTGTACTGTATGCTCTGTTTTTGACATTCTTTTTCATCTGTGGAGTAGGCACTACTGCATATAGCGCGGTTCAAGTGATCTATGATAGACCGATCAAGGTCTTTTCGTCTATTAAATCTATGAGAAATTCCTTCTTCCCTCTTCTCTCCACTTTCATTGTTTCGCAAACCATTTTCATTTCAATCACTCTTCTTTTCGCCCTGATTTTGGTGTTTGTAGTGCGAATTCTTCAATCTCTTGAACTAATTGAGCTCGGATCAAACTCGGATCACTTGTTATTTTTGGTTATTTTCTGGTTGGTCGTGATTGTACCGATTCTGATTTGGCTACAAGTGAACTGGTGTTTAGCTTATGTGATAACAGTGATTGAATCGAAGAAAGGTTACGAGACACTAAGGAGAAGTGCGAAGTTAGTAAAGGGGGAGAGATGGGTAGCTTTAAAGATACTTATGTATTACG</gDNA_template>
            <first_frame> I  L  H  Q  K  M  D  V  A  Y  G  M  K  S  L  N  Q  P  E  Q  Y  S  D  L  M  F  A  I  F  M  L  F  Q  S  Y  S  S  S  L  S  F  S  L  *  F  S  I  L  L  S  N  L  P  Y  F  T  P  I  I  I  S  L  A  M  L  N  F  N  F  L  N  F  S  Q  F  Q  V  S  K  L  F  Y  L  Y  C  M  L  C  F  *  H  S  F  S  S  V  E  *  A  L  L  H  I  A  R  F  K  *  S  M  I  D  R  S  R  S  F  R  L  L  N  L  *  E  I  P  S  S  L  F  S  P  L  S  L  F  R  K  P  F  S  F  Q  S  L  F  F  S  P  *  F  W  C  L  *  C  E  F  F  N  L  L  N  *  L  S  S  D  Q  T  R  I  T  C  Y  F  W  L  F  S  G  W  S  *  L  Y  R  F  *  F  G  Y  K  *  T  G  V  *  L  M  *  *  Q  *  L  N  R  R  K  V  T  R  H  *  G  E  V  R  S  *  *  R  G  R  D  G  *  L  *  R  Y  L  C  I  T </first_frame>
            <second_frame>  Y  F  I  R  K  W  M  *  L  M  E  *  N  H  *  I  N  Q  S  N  I  Q  I  S  C  S  P  F  S  C  Y  F  N  P  I  P  L  P  Y  H  S  L  S  N  S  L  S  F  F  R  T  C  H  I  S  P  R  L  S  F  H  *  L  C  S  T  S  I  S  S  T  F  R  N  F  K  F  R  N  Y  S  T  C  T  V  C  S  V  F  D  I  L  F  H  L  W  S  R  H  Y  C  I  *  R  G  S  S  D  L  *  *  T  D  Q  G  L  F  V  Y  *  I  Y  E  K  F  L  L  P  S  S  L  H  F  H  C  F  A  N  H  F  H  F  N  H  S  S  F  R  P  D  F  G  V  C  S  A  N  S  S  I  S  *  T  N  *  A  R  I  K  L  G  S  L  V  I  F  G  Y  F  L  V  G  R  D  C  T  D  S  D  L  A  T  S  E  L  V  F  S  L  C  D  N  S  D  *  I  E  E  R  L  R  D  T  K  E  K  C  E  V  S  K  G  G  E  M  G  S  F  K  D  T  Y  V  L   </second_frame>
            <third_frame>   T  S  S  E  N  G  C  S  L  W  N  E  I  I  E  S  T  R  A  I  F  R  S  H  V  R  H  F  H  A  I  S  I  L  F  L  F  P  I  I  L  S  L  I  L  Y  P  S  F  E  L  A  I  F  H  P  D  Y  H  F  T  S  Y  A  Q  L  Q  F  P  Q  L  F  A  I  S  S  F  E  T  I  L  L  V  L  Y  A  L  F  L  T  F  F  F  I  C  G  V  G  T  T  A  Y  S  A  V  Q  V  I  Y  D  R  P  I  K  V  F  S  S  I  K  S  M  R  N  S  F  F  P  L  L  S  T  F  I  V  S  Q  T  I  F  I  S  I  T  L  L  F  A  L  I  L  V  F  V  V  R  I  L  Q  S  L  E  L  I  E  L  G  S  N  S  D  H  L  L  F  L  V  I  F  W  L  V  V  I  V  P  I  L  I  W  L  Q  V  N  W  C  L  A  Y  V  I  T  V  I  E  S  K  K  G  Y  E  T  L  R  R  S  A  K  L  V  K  G  E  R  W  V  A  L  K  I  L  M  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40135" stop="39434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSENGCSLWNEIIESTRAIFRSHVRHFHAISILFLFPIILSLILYPSFELAIFHPDYHFTSYAQLQFPQLFAISSFETILLVLYALFLTFFFICGVGTTAYSAVQVIYDRPIKVFSSIKSMRNSFFPLLSTFIVSQTIFISITLLFALILVFVVRILQSLELIELGSNSDHLLFLVIFWLVVIVPILIWLQVNWCLAYVITVIESKKGYETLRRSAKLVKGERWVALKILMYY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="88941" PGL_stop="88204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88941" e_stop="88616"/>
            <exon e_start="88426" e_stop="88378"/>
            <exon e_start="88269" e_stop="88204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.666" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88941" e_stop="88616" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88615" i_stop="88427" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88426" e_stop="88378" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.666">
            <gDNA_intron_boundary i_start="88377" i_stop="88270" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88269" e_stop="88204" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88941" stop="88616"/>
              <exon start="88426" stop="88378"/>
              <exon start="88269" stop="88204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAACGGGATGGAATTAACTGCTGATGTCATTTGTTACACTGTTTTGATTGATAGTCACTGTAAATCAGACAACATTGATGATGCTATTCACCTTTTCACTGAAATGATTGATAGAGGTTTAGAACCTGATAGTGTGACATACACAGCTCTAATATGTGGCTATTGTAAGCAAGGACATGTTGAGATGGCTAAAGAACTTGTGAATGATATGTGGAGAAAGGGAATACAACCAGATAGCCATACCATCTCAGCACTACATCATGGAATCATAAAGGCCAAAAAGTTGCACCTTAGGCATGACAATAACTCAGCCCAAAATCGGAG : ACTGCAGGTTATCTAGTGTAGTTTTGGCAAGGCACAAGTTTGTTGCATG : AGCACATACTTTGGTAATACTGGAAAGAGAAGAGTTGGTGCTCCTGATGTAACTAAGCCAGCAGCG</gDNA_template>
            <first_frame> M  N  G  M  E  L  T  A  D  V  I  C  Y  T  V  L  I  D  S  H  C  K  S  D  N  I  D  D  A  I  H  L  F  T  E  M  I  D  R  G  L  E  P  D  S  V  T  Y  T  A  L  I  C  G  Y  C  K  Q  G  H  V  E  M  A  K  E  L  V  N  D  M  W  R  K  G  I  Q  P  D  S  H  T  I  S  A  L  H  H  G  I  I  K  A  K  K  L  H  L  R  H  D  N  N  S  A  Q  N  R  R :   L  Q  V  I  *  C  S  F  G  K  A  Q  V  C  C  M  :  S  T  Y  F  G  N  T  G  K  R  R  V  G  A  P  D  V  T  K  P  A  A </first_frame>
            <second_frame>  *  T  G  W  N  *  L  L  M  S  F  V  T  L  F  *  L  I  V  T  V  N  Q  T  T  L  M  M  L  F  T  F  S  L  K  *  L  I  E  V  *  N  L  I  V  *  H  T  Q  L  *  Y  V  A  I  V  S  K  D  M  L  R  W  L  K  N  L  *  M  I  C  G  E  R  E  Y  N  Q  I  A  I  P  S  Q  H  Y  I  M  E  S  *  R  P  K  S  C  T  L  G  M  T  I  T  Q  P  K  I  G   : D  C  R  L  S  S  V  V  L  A  R  H  K  F  V  A  * :   A  H  T  L  V  I  L  E  R  E  E  L  V  L  L  M  *  L  S  Q  Q   </second_frame>
            <third_frame>   E  R  D  G  I  N  C  *  C  H  L  L  H  C  F  D  *  *  S  L  *  I  R  Q  H  *  *  C  Y  S  P  F  H  *  N  D  *  *  R  F  R  T  *  *  C  D  I  H  S  S  N  M  W  L  L  *  A  R  T  C  *  D  G  *  R  T  C  E  *  Y  V  E  K  G  N  T  T  R  *  P  Y  H  L  S  T  T  S  W  N  H  K  G  Q  K  V  A  P  *  A  *  Q  *  L  S  P  K  S  E  :  T  A  G  Y  L  V  *  F  W  Q  G  T  S  L  L  H   : E  H  I  L  W  *  Y  W  K  E  K  S  W  C  S  *  C  N  *  A  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88941" stop="88616"/>
                    <exon start="88426" stop="88411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNGMELTADVICYTVLIDSHCKSDNIDDAIHLFTEMIDRGLEPDSVTYTALICGYCKQGHVEMAKELVNDMWRKGIQPDSHTISALHHGIIKAKKLHLRHDNNSAQNRRLQVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="91329" PGL_stop="95008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91329" e_stop="91396"/>
            <exon e_start="92417" e_stop="92515"/>
            <exon e_start="93069" e_stop="93098"/>
            <exon e_start="93286" e_stop="93387"/>
            <exon e_start="93597" e_stop="93704"/>
            <exon e_start="94684" e_stop="94738"/>
            <exon e_start="94859" e_stop="95008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.603" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.352" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91329" e_stop="91396" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91397" i_stop="92416" i_length="1020"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92417" e_stop="92515" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.603">
            <gDNA_intron_boundary i_start="92516" i_stop="93068" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93069" e_stop="93098" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.352">
            <gDNA_intron_boundary i_start="93099" i_stop="93285" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93286" e_stop="93387" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93597" e_stop="93704" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94684" e_stop="94738" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.840" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94739" i_stop="94858" i_length="120"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="94859" e_stop="95008" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91329" stop="91396"/>
              <exon start="92417" stop="92515"/>
              <exon start="93069" stop="93098"/>
              <exon start="93286" stop="93387"/>
              <exon start="93597" stop="93704"/>
              <exon start="94684" stop="94738"/>
              <exon start="94859" stop="95008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91345" stop="91396"/>
              <exon start="92417" stop="92515"/>
              <exon start="93069" stop="93098"/>
              <exon start="93286" stop="93387"/>
              <exon start="93597" stop="93704"/>
              <exon start="94684" stop="94738"/>
              <exon start="94859" stop="94974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAG : GATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACG : GGACAAGGTTTTTGAACAACAAAAGATTTT : CTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT : CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG : GCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATG : GTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGTGAAGAACAAAGCCAACATAATCTTCTATCCATTG</gDNA_template>
            <first_frame> L  L  C  G  R  V  T  I  A  K  S  S  D  F  A  A  K  L  Q  F  G  Q  R :   I  A  M  D  T  I  K  Q  E  K  V  R  R  F  E  E  F  I  D  R  R  L  K  P  D  L  V  H  A  I  A  E  R :   D  K  V  F  E  Q  Q  K  I  F :   S  D  L  R  R  N  I  E  N  L  E  K  N  N  V  T  N  L  K  T  L  V  N  I  G  S  E  V  Y  L  Q  A  D  V :   P  D  T  T  R  I  F  V  D  V  G  L  G  F  H  V  E  F  T  W  S  E  A  L  N  Y  I  S  A  R  E  E  K  L  A  R :   Q  I  E  E  Y  T  R  L  V  A  S  I  K  A  Q  I  K  M  :  V  C  E  G  I  R  E  L  L  Q  I  P  P  E  R  A  Y  *  G  V  Y  V  L  N  C  *  R  R  G  D  L  P  R  Q  G  T  Q  K  V  K  N  K  A  N  I  I  F  Y  P  L </first_frame>
            <second_frame>  Y  S  V  E  G  *  Q  S  Q  K  A  Q  I  L  L  R  S  F  N  L  D  K   : G  L  R  W  T  L  L  N  K  K  K  *  G  D  L  R  S  L  L  I  A  V  *  N  Q  I  L  F  M  Q  L  L  N   : G  T  R  F  L  N  N  K  R  F   : S  L  I  *  D  V  I  *  R  I  W  R  R  T  M  *  L  I  *  R  H  W  L  I  L  A  L  K  Y  T  C  K  L  M   : S  Q  I  Q  H  A  Y  L  L  M  L  D  L  D  F  M  W  S  L  L  G  Q  K  L  *  I  I  Y  Q  Q  G  R  R  N  *  P   : G  K  *  R  N  I  H  V  *  L  H  Q  L  R  P  R  S  R  W :   F  V  K  G  S  V  S  C  S  R  F  H  Q  N  E  L  T  K  V  Y  T  S  *  I  A  K  E  E  G  I  Y  R  D  K  G  P  K  K  *  R  T  K  P  T  *  S  S  I  H   </second_frame>
            <third_frame>   T  L  W  K  G  D  N  R  K  K  L  R  F  C  C  E  A  S  I  W  T  K  :  D  C  D  G  H  Y  *  T  R  K  S  K  E  I  *  G  V  Y  *  S  P  S  E  T  R  S  C  S  C  N  C  *  T  :  G  Q  G  F  *  T  T  K  D  F  :  L  *  F  K  T  *  Y  R  E  F  G  E  E  Q  C  N  *  S  E  D  I  G  *  Y  W  L  *  S  I  P  A  S  *  C  :  P  R  Y  N  T  H  I  C  *  C  W  T  W  I  S  C  G  V  Y  L  V  R  S  S  K  L  Y  I  S  K  G  G  E  T  S  Q  :  A  N  R  G  I  Y  T  S  S  C  I  N  *  G  P  D  Q  D   : G  L  *  R  D  P  *  V  A  P  D  S  T  R  T  S  L  L  R  C  I  R  L  K  L  L  K  K  R  G  F  T  A  T  R  D  P  K  S  E  E  Q  S  Q  H  N  L  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91329" stop="91396"/>
                    <exon start="92417" stop="92515"/>
                    <exon start="93069" stop="93098"/>
                    <exon start="93286" stop="93387"/>
                    <exon start="93597" stop="93704"/>
                    <exon start="94684" stop="94738"/>
                    <exon start="94859" stop="94912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCGRVTIAKSSDFAAKLQFGQRIAMDTIKQEKVRRFEEFIDRRLKPDLVHAIAERDKVFEQQKIFSDLRRNIENLEKNNVTNLKTLVNIGSEVYLQADVPDTTRIFVDVGLGFHVEFTWSEALNYISAREEKLARQIEEYTRLVASIKAQIKMVCEGIRELLQIPPERAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93171" e_stop="93387"/>
            <exon e_start="93597" e_stop="93704"/>
            <exon e_start="94684" e_stop="94721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93171" e_stop="93387" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93597" e_stop="93704" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94684" e_stop="94721" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93171" stop="93387"/>
              <exon start="93597" stop="93704"/>
              <exon start="94684" stop="94721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT : CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG : GCAAATAGAGGAATATACACGTCTAGTTGCATCAATTA</gDNA_template>
            <first_frame> F  S  S  S  L  H  L  Q  A  C  E  L  M  N  Y  L  I  T  Y  M  E  I  D  V  G  M  R  S  T  *  F  S  *  P  Y  L  F  L  A  L  I  *  D  V  I  *  R  I  W  R  R  T  M  *  L  I  *  R  H  W  L  I  L  A  L  K  Y  T  C  K  L  M   : S  Q  I  Q  H  A  Y  L  L  M  L  D  L  D  F  M  W  S  L  L  G  Q  K  L  *  I  I  Y  Q  Q  G  R  R  N  *  P   : G  K  *  R  N  I  H  V  *  L  H  Q  L </first_frame>
            <second_frame>  L  V  V  V  C  T  C  R  H  V  S  *  *  I  I  *  L  L  I  W  K  L  T  L  E  *  G  L  H  S  F  L  N  H  I  F  S  *  L  *  F  K  T  *  Y  R  E  F  G  E  E  Q  C  N  *  S  E  D  I  G  *  Y  W  L  *  S  I  P  A  S  *  C  :  P  R  Y  N  T  H  I  C  *  C  W  T  W  I  S  C  G  V  Y  L  V  R  S  S  K  L  Y  I  S  K  G  G  E  T  S  Q  :  A  N  R  G  I  Y  T  S  S  C  I  N   </second_frame>
            <third_frame>   *  *  *  F  A  L  A  G  M  *  V  D  E  L  F  N  Y  L  Y  G  N  *  R  W  N  E  V  Y  I  V  F  L  T  I  S  F  L  S  S  D  L  R  R  N  I  E  N  L  E  K  N  N  V  T  N  L  K  T  L  V  N  I  G  S  E  V  Y  L  Q  A  D  V :   P  D  T  T  R  I  F  V  D  V  G  L  G  F  H  V  E  F  T  W  S  E  A  L  N  Y  I  S  A  R  E  E  K  L  A  R :   Q  I  E  E  Y  T  R  L  V  A  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93239" stop="93387"/>
                    <exon start="93597" stop="93704"/>
                    <exon start="94684" stop="94720"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWNEVYIVFLTISFLSSDLRRNIENLEKNNVTNLKTLVNIGSEVYLQADVPDTTRIFVDVGLGFHVEFTWSEALNYISAREEKLARQIEEYTRLVASI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="95881" PGL_stop="99833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95881" e_stop="95970"/>
            <exon e_start="96092" e_stop="96185"/>
            <exon e_start="96913" e_stop="96972"/>
            <exon e_start="97250" e_stop="97351"/>
            <exon e_start="97733" e_stop="97809"/>
            <exon e_start="98182" e_stop="98305"/>
            <exon e_start="98608" e_stop="98672"/>
            <exon e_start="99423" e_stop="99492"/>
            <exon e_start="99766" e_stop="99833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.608" e_score="0.956"/>
          <exon-intron don_prob="1.000" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="95881" e_stop="95970" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.608">
            <gDNA_intron_boundary i_start="95971" i_stop="96091" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96092" e_stop="96185" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.653">
            <gDNA_intron_boundary i_start="96186" i_stop="96912" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96913" e_stop="96972" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.977">
            <gDNA_intron_boundary i_start="96973" i_stop="97249" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="97351" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.680" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97352" i_stop="97732" i_length="381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97733" e_stop="97809" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97810" i_stop="98181" i_length="372"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98182" e_stop="98305" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98306" i_stop="98607" i_length="302"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98608" e_stop="98672" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98673" i_stop="99422" i_length="750"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99423" e_stop="99492" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99493" i_stop="99765" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="99766" e_stop="99833" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95881" stop="95970"/>
              <exon start="96092" stop="96185"/>
              <exon start="96913" stop="96972"/>
              <exon start="97250" stop="97351"/>
              <exon start="97733" stop="97809"/>
              <exon start="98182" stop="98305"/>
              <exon start="98608" stop="98672"/>
              <exon start="99423" stop="99492"/>
              <exon start="99766" stop="99833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95881" stop="95970"/>
              <exon start="96092" stop="96185"/>
              <exon start="96913" stop="96972"/>
              <exon start="97250" stop="97351"/>
              <exon start="97733" stop="97809"/>
              <exon start="98182" stop="98305"/>
              <exon start="98608" stop="98672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96105" stop="96185"/>
              <exon start="96913" stop="96972"/>
              <exon start="97250" stop="97351"/>
              <exon start="97733" stop="97809"/>
              <exon start="98182" stop="98305"/>
              <exon start="98608" stop="98672"/>
              <exon start="99423" stop="99492"/>
              <exon start="99766" stop="99800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCGGCGCCAATTCCAAATTTCTGCAAAATCTCTTCTTCTTCTTCAACGCTATTCTGCAAAATTGCTCCTTTCTTCTTCCATCCAGTG : AATTGTTCTCCTCCTAGAGGTTTTTCTTGTGTCAGAAAGAGTTCCATGGCTTGGTGGGAAGGTCTCGATGAAGCTCGTGTTCTTATTGCAAAAG : AGCCTTCTAAGGATGGGAACAAGGTAGAGCAGCTTTTATCGCTCCGACATCCAAAATCTG : GAAATGCAACATGTTACCTTTGTGTTGATGAATCTCTTCAAGAACTTCACTGGTTCAAGCAATCTTATGGGTCTTGGTTCCTTGGGGATTATGTATGTGAAG : ATGGTCGTTTGTATACTGCAACTCCAGTCGATCCAGTTTTTGTCCTGTTGCCTATTTTTGATGAAGCAAGAATGAAG : AAAAATGATGATCCAGGAAAGTTTAGGCAAGTGGATGAAATCATTTATGTTGTAGGCTATCCTGGATATCAGCATCTTTCTTCCATTGCTGAGAACTGCATGCAAGTGGTTTGTGATGTCAAAG : ATGTAGGAATGACAAAGTTTTTCAGGCTTAATGATGAGAAGGTGCTAAAGTGGTTATGCTTGAAG : GTAATACAATTGAAGAAGACATTGTTGACACTGGATAAGAACTATGCTGCTCGAGATAAGAAAGAAATAT : TAACTGATGCAGTATCTATAGTTGGAGAGTACTTGAAGGAAGAGCCTTGGTTGAAGCTCCTCTGCAGC</gDNA_template>
            <first_frame> I  S  A  P  I  P  N  F  C  K  I  S  S  S  S  S  T  L  F  C  K  I  A  P  F  F  F  H  P  V  :  N  C  S  P  P  R  G  F  S  C  V  R  K  S  S  M  A  W  W  E  G  L  D  E  A  R  V  L  I  A  K   : E  P  S  K  D  G  N  K  V  E  Q  L  L  S  L  R  H  P  K  S   : G  N  A  T  C  Y  L  C  V  D  E  S  L  Q  E  L  H  W  F  K  Q  S  Y  G  S  W  F  L  G  D  Y  V  C  E   : D  G  R  L  Y  T  A  T  P  V  D  P  V  F  V  L  L  P  I  F  D  E  A  R  M  K  :  K  N  D  D  P  G  K  F  R  Q  V  D  E  I  I  Y  V  V  G  Y  P  G  Y  Q  H  L  S  S  I  A  E  N  C  M  Q  V  V  C  D  V  K   : D  V  G  M  T  K  F  F  R  L  N  D  E  K  V  L  K  W  L  C  L  K  :  V  I  Q  L  K  K  T  L  L  T  L  D  K  N  Y  A  A  R  D  K  K  E  I   : L  T  D  A  V  S  I  V  G  E  Y  L  K  E  E  P  W  L  K  L  L  C  S </first_frame>
            <second_frame>  F  R  R  Q  F  Q  I  S  A  K  S  L  L  L  L  Q  R  Y  S  A  K  L  L  L  S  S  S  I  Q  * :   I  V  L  L  L  E  V  F  L  V  S  E  R  V  P  W  L  G  G  K  V  S  M  K  L  V  F  L  L  Q  K  :  S  L  L  R  M  G  T  R  *  S  S  F  Y  R  S  D  I  Q  N  L  :  E  M  Q  H  V  T  F  V  L  M  N  L  F  K  N  F  T  G  S  S  N  L  M  G  L  G  S  L  G  I  M  Y  V  K  :  M  V  V  C  I  L  Q  L  Q  S  I  Q  F  L  S  C  C  L  F  L  M  K  Q  E  *  R :   K  M  M  I  Q  E  S  L  G  K  W  M  K  S  F  M  L  *  A  I  L  D  I  S  I  F  L  P  L  L  R  T  A  C  K  W  F  V  M  S  K  :  M  *  E  *  Q  S  F  S  G  L  M  M  R  R  C  *  S  G  Y  A  *  R :   *  Y  N  *  R  R  H  C  *  H  W  I  R  T  M  L  L  E  I  R  K  K  Y  :  *  L  M  Q  Y  L  *  L  E  S  T  *  R  K  S  L  G  *  S  S  S  A   </second_frame>
            <third_frame>   F  G  A  N  S  K  F  L  Q  N  L  F  F  F  F  N  A  I  L  Q  N  C  S  F  L  L  P  S  S   : E  L  F  S  S  *  R  F  F  L  C  Q  K  E  F  H  G  L  V  G  R  S  R  *  S  S  C  S  Y  C  K  R :   A  F  *  G  W  E  Q  G  R  A  A  F  I  A  P  T  S  K  I  W :   K  C  N  M  L  P  L  C  *  *  I  S  S  R  T  S  L  V  Q  A  I  L  W  V  L  V  P  W  G  L  C  M  *  R :   W  S  F  V  Y  C  N  S  S  R  S  S  F  C  P  V  A  Y  F  *  *  S  K  N  E   : E  K  *  *  S  R  K  V  *  A  S  G  *  N  H  L  C  C  R  L  S  W  I  S  A  S  F  F  H  C  *  E  L  H  A  S  G  L  *  C  Q  R :   C  R  N  D  K  V  F  Q  A  *  *  *  E  G  A  K  V  V  M  L  E   : G  N  T  I  E  E  D  I  V  D  T  G  *  E  L  C  C  S  R  *  E  R  N  I :   N  *  C  S  I  Y  S  W  R  V  L  E  G  R  A  L  V  E  A  P  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95881" stop="95970"/>
                    <exon start="96092" stop="96185"/>
                    <exon start="96913" stop="96972"/>
                    <exon start="97250" stop="97351"/>
                    <exon start="97733" stop="97809"/>
                    <exon start="98182" stop="98305"/>
                    <exon start="98608" stop="98672"/>
                    <exon start="99423" stop="99492"/>
                    <exon start="99766" stop="99833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISAPIPNFCKISSSSSTLFCKIAPFFFHPVNCSPPRGFSCVRKSSMAWWEGLDEARVLIAKEPSKDGNKVEQLLSLRHPKSGNATCYLCVDESLQELHWFKQSYGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFDEARMKKNDDPGKFRQVDEIIYVVGYPGYQHLSSIAENCMQVVCDVKDVGMTKFFRLNDEKVLKWLCLKVIQLKKTLLTLDKNYAARDKKEILTDAVSIVGEYLKEEPWLKLLCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="101864" PGL_stop="102856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101864" e_stop="102121"/>
            <exon e_start="102331" e_stop="102856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="101864" e_stop="102121" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102122" i_stop="102330" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="102331" e_stop="102856" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101864" stop="102121"/>
              <exon start="102331" stop="102625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101870" stop="102121"/>
              <exon start="102331" stop="102644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101881" stop="102121"/>
              <exon start="102331" stop="102856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101882" stop="102121"/>
              <exon start="102331" stop="102631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101882" stop="102121"/>
              <exon start="102331" stop="102631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101882" stop="102121"/>
              <exon start="102331" stop="102574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAAACTACCACTATTTTTATTAATTCTATTCATAAAATGAGTGAGAAAAAATCATCACCAATTGTGAATAATAATGAAGAAATAGAGAGGATTATAGAGAAACTGCCCAAAACTGATCATTTTTGGAATAACTCTCGACTTTATCAGTGGGAAGGGTTTTGGTCCACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAGGCAACCTTCAAATCAGAACCTAATGATGTTCTCTTGGCATCTTCCATGAAAACAG : GTACAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGTAGAAGAAGAAGACCTTTTAGTTAAGGATAATCCTCATTTCTATGTTCCAACAATAGAGGTCATGGATTATTATTCAAAACCTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACTCATTTACCTTATAGAGTTTTGCCAGATTCAATCAAAAATTCGAATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACCTTAATTTCTATGTGGCATTTCATCAATAGTCGTAACCGTTTAGAAGATCTCTCACCTTTAGAAGAAGTTGTGGAGCACTTTTGCAAAGGTGAACATCTGTATGGACCTTTTTTTGAACATGTTCTTGAATACTGGGAAGAAAGTAAAAAAGAGCCTCAAAAAATATTATTCTTGAAGTATGAGGACTTGAAGATAGACACTAAGAAAGAGGTGGCAAAAATAGCCTTGTTTCTTGGAAAACCTTTTGGTAA</gDNA_template>
            <first_frame> I  K  L  P  L  F  L  L  I  L  F  I  K  *  V  R  K  N  H  H  Q  L  *  I  I  M  K  K  *  R  G  L  *  R  N  C  P  K  L  I  I  F  G  I  T  L  D  F  I  S  G  K  G  F  G  P  L  L  S  F  *  R  Q  P  W  S  S  R  Q  P  S  N  Q  N  L  M  M  F  S  W  H  L  P  *  K  Q  :  V  Q  H  G  S  R  P  Y  V  Y  P  S  C  K  L  V  I  K  R  *  K  K  K  T  F  *  L  R  I  I  L  I  S  M  F  Q  Q  *  R  S  W  I  I  I  Q  N  L  *  L  M  I  Y  T  Q  C  P  L  Q  D  Y  F  T  L  I  Y  L  I  E  F  C  Q  I  Q  S  K  I  R  I  I  A  R  L  Y  T  *  Q  E  I  L  K  I  P  *  F  L  C  G  I  S  S  I  V  V  T  V  *  K  I  S  H  L  *  K  K  L  W  S  T  F  A  K  V  N  I  C  M  D  L  F  L  N  M  F  L  N  T  G  K  K  V  K  K  S  L  K  K  Y  Y  S  *  S  M  R  T  *  R  *  T  L  R  K  R  W  Q  K  *  P  C  F  L  E  N  L  L  V  </first_frame>
            <second_frame>  L  N  Y  H  Y  F  Y  *  F  Y  S  *  N  E  *  E  K  I  I  T  N  C  E  *  *  *  R  N  R  E  D  Y  R  E  T  A  Q  N  *  S  F  L  E  *  L  S  T  L  S  V  G  R  V  L  V  H  S  Y  H  F  K  G  S  H  G  L  Q  G  N  L  Q  I  R  T  *  *  C  S  L  G  I  F  H  E  N  R :   Y  N  M  A  Q  G  H  M  C  I  H  H  A  S  W  *  *  R  G  R  R  R  R  P  F  S  *  G  *  S  S  F  L  C  S  N  N  R  G  H  G  L  L  F  K  T  S  N  S  *  S  I  H  N  A  L  S  K  I  I  S  H  S  F  T  L  *  S  F  A  R  F  N  Q  K  F  E  *  L  Q  D  Y  I  H  N  K  K  S  *  R  Y  L  N  F  Y  V  A  F  H  Q  *  S  *  P  F  R  R  S  L  T  F  R  R  S  C  G  A  L  L  Q  R  *  T  S  V  W  T  F  F  *  T  C  S  *  I  L  G  R  K  *  K  R  A  S  K  N  I  I  L  E  V  *  G  L  E  D  R  H  *  E  R  G  G  K  N  S  L  V  S  W  K  T  F  W  * </second_frame>
            <third_frame>   *  T  T  T  I  F  I  N  S  I  H  K  M  S  E  K  K  S  S  P  I  V  N  N  N  E  E  I  E  R  I  I  E  K  L  P  K  T  D  H  F  W  N  N  S  R  L  Y  Q  W  E  G  F  W  S  T  L  I  I  L  K  A  A  M  V  F  K  A  T  F  K  S  E  P  N  D  V  L  L  A  S  S  M  K  T   : G  T  T  W  L  K  A  I  C  V  S  I  M  Q  A  G  N  K  E  V  E  E  E  D  L  L  V  K  D  N  P  H  F  Y  V  P  T  I  E  V  M  D  Y  Y  S  K  P  L  T  H  D  L  Y  T  M  P  S  P  R  L  F  H  T  H  L  P  Y  R  V  L  P  D  S  I  K  N  S  N  N  C  K  I  I  Y  I  T  R  N  P  K  D  T  L  I  S  M  W  H  F  I  N  S  R  N  R  L  E  D  L  S  P  L  E  E  V  V  E  H  F  C  K  G  E  H  L  Y  G  P  F  F  E  H  V  L  E  Y  W  E  E  S  K  K  E  P  Q  K  I  L  F  L  K  Y  E  D  L  K  I  D  T  K  K  E  V  A  K  I  A  L  F  L  G  K  P  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101869" stop="102121"/>
                    <exon start="102331" stop="102854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTIFINSIHKMSEKKSSPIVNNNEEIERIIEKLPKTDHFWNNSRLYQWEGFWSTLIILKAAMVFKATFKSEPNDVLLASSMKTGTTWLKAICVSIMQAGNKEVEEEDLLVKDNPHFYVPTIEVMDYYSKPLTHDLYTMPSPRLFHTHLPYRVLPDSIKNSNNCKIIYITRNPKDTLISMWHFINSRNRLEDLSPLEEVVEHFCKGEHLYGPFFEHVLEYWEESKKEPQKILFLKYEDLKIDTKKEVAKIALFLGKPFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="102971" PGL_stop="116076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113477" e_stop="113487"/>
            <exon e_start="114367" e_stop="114597"/>
            <exon e_start="114866" e_stop="115768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.000" e_score="0.727"/>
          <exon-intron don_prob="0.908" acc_prob="0.993" e_score="0.955"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.727">
            <gDNA_exon_boundary e_start="113477" e_stop="113487" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113488" i_stop="114366" i_length="879"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="114367" e_stop="114597" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="114866" e_stop="115768" e_length="903"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113477" stop="113487"/>
              <exon start="114367" stop="114597"/>
              <exon start="114866" stop="115405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114384" stop="114597"/>
              <exon start="114866" stop="115416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114392" stop="114597"/>
              <exon start="114866" stop="115144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114397" stop="114597"/>
              <exon start="114866" stop="115482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114515" stop="114597"/>
              <exon start="114866" stop="115607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114565" stop="114597"/>
              <exon start="114866" stop="115636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115032" stop="115765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115038" stop="115768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115189" stop="115403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115190" stop="115702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGATTAAA : TTTTATTAAGTTCTATTCCTAAAATGAGTGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAG : GTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATCTACTCTTCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACATTCATCTATTTGTCTTACTCAACTTAAATACACCCTGATCTACCACATAGCATAGCAAATGGTTTC</gDNA_template>
            <first_frame> Y  *  L  N :   F  I  K  F  Y  S  *  N  E  C  I  T  N  C  E  *  *  R  N  R  E  N  Y  R  A  T  A  Q  N  *  L  F  L  E  *  L  S  T  L  S  V  G  R  V  L  V  Y  S  Y  H  F  K  G  S  H  G  L  Q  S  N  L  Q  I  K  T  K  *  C  S  L  G  I  F  H  E  N  R :   F  N  M  A  Q  G  H  M  C  I  H  H  A  S  W  *  *  R  G  R  R  R  R  S  F  S  *  G  *  S  S  F  L  C  S  N  N  R  G  H  G  L  L  F  K  N  S  N  S  *  S  I  H  N  A  L  S  K  I  I  S  H  T  F  T  L  *  G  F  A  R  F  N  *  K  F  G  *  L  Q  D  Y  I  H  N  K  K  S  *  R  Y  F  D  F  Y  V  A  F  L  Q  Q  S  *  A  F  R  R  S  H  S  F  R  R  S  C  G  E  L  L  Q  R  G  S  S  I  W  T  L  F  *  T  C  S  *  I  L  G  R  K  Q  K  K  A  S  K  D  I  I  L  E  V  *  R  L  E  D  R  P  *  E  R  G  G  K  D  S  L  V  S  W  K  A  F  W  *  *  R  G  F  G  D  S  F  E  Q  V  *  L  G  E  A  *  E  F  G  G  *  *  E  W  I  N  L  L  F  C  P  Q  *  C  I  F  *  K  R  N  C  W  G  L  E  E  L  H  E  A  *  N  G  R  A  T  *  Q  D  Y  Q  I  E  A  S  R  E  *  P  *  T  L  I  F  I  N  K  K  Y  G  K  H  T  G  I  T  *  R  E  L  L  V  S  F  L  N  N  W  E  S  *  K  H  S  S  I  C  L  T  Q  L  K  Y  T  L  I  Y  H  I  A  *  Q  M  V   </first_frame>
            <second_frame>  I  D  *   : I  L  L  S  S  I  P  K  M  S  A  S  P  I  V  N  N  E  E  I  E  R  I  I  E  Q  L  P  K  I  D  Y  F  W  N  N  Y  Q  L  Y  Q  W  E  G  F  W  S  T  L  I  I  L  K  A  A  M  V  F  K  A  T  F  K  S  K  P  N  D  V  L  L  A  S  S  M  K  T   : G  S  T  W  L  K  A  I  C  V  S  I  M  Q  A  G  N  K  E  E  D  E  E  D  L  L  V  K  D  N  P  H  F  Y  V  P  T  I  E  A  M  D  Y  Y  S  K  T  L  T  H  D  L  Y  T  M  P  S  P  R  L  F  H  T  H  L  P  Y  R  V  L  P  D  S  I  K  N  S  D  N  C  K  I  I  Y  I  T  R  N  P  K  D  T  L  I  S  M  W  H  F  F  N  N  R  K  R  L  E  D  L  T  P  L  E  E  V  V  E  N  F  C  K  G  V  H  L  Y  G  P  F  F  E  H  V  L  E  Y  W  E  E  S  K  K  K  P  Q  K  I  L  F  L  K  Y  E  D  L  K  I  D  P  K  K  E  V  A  K  I  A  L  F  L  G  K  P  F  G  N  E  E  D  L  E  I  V  L  N  K  C  S  L  E  R  L  K  N  L  E  V  N  K  S  G  S  I  Y  S  S  V  H  N  S  A  F  F  R  K  G  I  V  G  D  W  K  N  Y  M  K  L  E  M  E  E  Q  L  D  K  I  T  K  L  K  L  Q  G  S  D  L  E  L  *  Y  L  *  T  R  S  M  E  S  T  Q  E  L  L  D  V  N  Y  *  Y  H  S  *  I  I  G  N  L  K  N  I  H  L  F  V  L  L  N  L  N  T  P  *  S  T  T  *  H  S  K  W  F  </second_frame>
            <third_frame>   L  I  K  :  F  Y  *  V  L  F  L  K  *  V  H  H  Q  L  *  I  M  K  K  *  R  E  L  *  S  N  C  P  K  L  I  I  F  G  I  I  I  N  F  I  S  G  K  G  F  G  L  L  L  S  F  *  R  Q  P  W  S  S  K  Q  P  S  N  Q  N  Q  M  M  F  S  W  H  L  P  *  K  Q  :  V  Q  H  G  S  R  P  Y  V  Y  P  S  C  K  L  V  I  K  R  K  T  K  K  I  F  *  L  R  I  I  L  I  F  M  F  Q  Q  *  R  P  W  I  I  I  Q  K  L  *  L  M  I  Y  T  Q  C  P  L  Q  D  Y  F  T  H  I  Y  L  I  G  F  C  Q  I  Q  L  K  I  R  I  I  A  R  L  Y  T  *  Q  E  I  L  K  I  L  *  F  L  C  G  I  S  S  T  I  V  S  V  *  K  I  S  L  L  *  K  K  L  W  R  T  F  A  K  G  F  I  Y  M  D  P  F  L  N  M  F  L  N  I  G  K  K  A  K  K  S  L  K  R  Y  Y  S  *  S  M  K  T  *  R  *  T  L  R  K  R  W  Q  R  *  P  C  F  L  E  S  L  L  V  M  K  R  I  W  R  *  F  *  T  S  V  A  W  R  G  L  R  I  W  R  L  I  R  V  D  Q  S  T  L  L  S  T  I  V  H  F  L  E  K  E  L  L  G  I  G  R  I  T  *  S  L  K  W  K  S  N  L  T  R  L  P  N  *  S  F  K  G  V  T  L  N  F  D  I  Y  K  Q  E  V  W  K  A  H  R  N  Y  L  T  *  I  I  S  I  I  L  E  *  L  G  I  L  K  T  F  I  Y  L  S  Y  S  T  *  I  H  P  D  L  P  H  S  I  A  N  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113487" stop="114597"/>
                    <exon start="114866" stop="115611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLSSIPKMSASPIVNNEEIERIIEQLPKIDYFWNNYQLYQWEGFWSTLIILKAAMVFKATFKSKPNDVLLASSMKTGSTWLKAICVSIMQAGNKEEDEEDLLVKDNPHFYVPTIEAMDYYSKTLTHDLYTMPSPRLFHTHLPYRVLPDSIKNSDNCKIIYITRNPKDTLISMWHFFNNRKRLEDLTPLEEVVENFCKGVHLYGPFFEHVLEYWEESKKKPQKILFLKYEDLKIDPKKEVAKIALFLGKPFGNEEDLEIVLNKCSLERLKNLEVNKSGSIYSSVHNSAFFRKGIVGDWKNYMKLEMEEQLDKITKLKLQGSDLEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113287" e_stop="113304"/>
            <exon e_start="113849" e_stop="113872"/>
            <exon e_start="114395" e_stop="114597"/>
            <exon e_start="114866" e_stop="115768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.898" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.908" acc_prob="0.993" e_score="0.955"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="113287" e_stop="113304" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113305" i_stop="113848" i_length="544"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="113849" e_stop="113872" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113873" i_stop="114394" i_length="522"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="114395" e_stop="114597" e_length="203"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114598" i_stop="114865" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.943">
            <gDNA_exon_boundary e_start="114866" e_stop="115768" e_length="903"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113287" stop="113304"/>
              <exon start="113849" stop="113872"/>
              <exon start="114395" stop="114597"/>
              <exon start="114866" stop="115520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114397" stop="114597"/>
              <exon start="114866" stop="115482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114515" stop="114597"/>
              <exon start="114866" stop="115607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114565" stop="114597"/>
              <exon start="114866" stop="115636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115032" stop="115765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115038" stop="115768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115189" stop="115403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115190" stop="115702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTAAAAAAATTA : ATTGAAAAAAAGTAGGGATAGAAG : TGCATCACCAATTGTGAATAATGAAGAAATAGAGAGAATTATAGAGCAACTGCCCAAAATTGATTATTTTTGGAATAATTATCAACTTTATCAGTGGGAAGGGTTTTGGTCTACTCTTATCATTTTAAAGGCAGCCATGGTCTTCAAAGCAACCTTCAAATCAAAACCAAATGATGTTCTCTTGGCATCTTCCATGAAAACAG : GTTCAACATGGCTCAAGGCCATATGTGTATCCATCATGCAAGCTGGTAATAAAGAGGAAGACGAAGAAGATCTTTTAGTTAAGGATAATCCTCATTTTTATGTTCCAACAATAGAGGCCATGGATTATTATTCAAAAACTCTAACTCATGATCTATACACAATGCCCTCTCCAAGATTATTTCACACACATTTACCTTATAGGGTTTTGCCAGATTCAATTAAAAATTCGGATAATTGCAAGATTATATACATAACAAGAAATCCTAAAGATACTTTGATTTCTATGTGGCATTTCTTCAACAATCGTAAGCGTTTAGAAGATCTCACTCCTTTAGAAGAAGTTGTGGAGAACTTTTGCAAAGGGGTTCATCTATATGGACCCTTTTTTGAACATGTTCTTGAATATTGGGAAGAAAGCAAAAAAAAGCCTCAAAAGATATTATTCTTGAAGTATGAAGACTTGAAGATAGACCCTAAGAAAGAGGTGGCAAAGATAGCCTTGTTTCTTGGAAAGCCTTTTGGTAATGAAGAGGATTTGGAGATAGTTTTGAACAAGTGTAGCTTGGAGAGGCTTAAGAATTTGGAGGTTAATAAGAGTGGATCAATCTACTCTTCTGTCCACAATAGTGCATTTTTTAGAAAAGGAATTGTTGGGGATTGGAAGAATTACATGAAGCTTGAAATGGAAGAGCAACTTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGACCTTGAACTTTGATATTTATAAACAAGAAGTATGGAAAGCACACAGGAATTACTTGACGTGAATTATTAGTATCATTCTTGAATAATTGGGAATCTTAAAAACATTCATCTATTTGTCTTACTCAACTTAAATACACCCTGATCTACCACATAGCATAGCAAATGGTTTC</gDNA_template>
            <first_frame> F  F  L  K  K  L  :  I  E  K  K  *  G  *  K  :  C  I  T  N  C  E  *  *  R  N  R  E  N  Y  R  A  T  A  Q  N  *  L  F  L  E  *  L  S  T  L  S  V  G  R  V  L  V  Y  S  Y  H  F  K  G  S  H  G  L  Q  S  N  L  Q  I  K  T  K  *  C  S  L  G  I  F  H  E  N  R :   F  N  M  A  Q  G  H  M  C  I  H  H  A  S  W  *  *  R  G  R  R  R  R  S  F  S  *  G  *  S  S  F  L  C  S  N  N  R  G  H  G  L  L  F  K  N  S  N  S  *  S  I  H  N  A  L  S  K  I  I  S  H  T  F  T  L  *  G  F  A  R  F  N  *  K  F  G  *  L  Q  D  Y  I  H  N  K  K  S  *  R  Y  F  D  F  Y  V  A  F  L  Q  Q  S  *  A  F  R  R  S  H  S  F  R  R  S  C  G  E  L  L  Q  R  G  S  S  I  W  T  L  F  *  T  C  S  *  I  L  G  R  K  Q  K  K  A  S  K  D  I  I  L  E  V  *  R  L  E  D  R  P  *  E  R  G  G  K  D  S  L  V  S  W  K  A  F  W  *  *  R  G  F  G  D  S  F  E  Q  V  *  L  G  E  A  *  E  F  G  G  *  *  E  W  I  N  L  L  F  C  P  Q  *  C  I  F  *  K  R  N  C  W  G  L  E  E  L  H  E  A  *  N  G  R  A  T  *  Q  D  Y  Q  I  E  A  S  R  E  *  P  *  T  L  I  F  I  N  K  K  Y  G  K  H  T  G  I  T  *  R  E  L  L  V  S  F  L  N  N  W  E  S  *  K  H  S  S  I  C  L  T  Q  L  K  Y  T  L  I  Y  H  I  A  *  Q  M  V   </first_frame>
            <second_frame>  F  F  *  K  N  * :   L  K  K  S  R  D  R  S :   A  S  P  I  V  N  N  E  E  I  E  R  I  I  E  Q  L  P  K  I  D  Y  F  W  N  N  Y  Q  L  Y  Q  W  E  G  F  W  S  T  L  I  I  L  K  A  A  M  V  F  K  A  T  F  K  S  K  P  N  D  V  L  L  A  S  S  M  K  T   : G  S  T  W  L  K  A  I  C  V  S  I  M  Q  A  G  N  K  E  E  D  E  E  D  L  L  V  K  D  N  P  H  F  Y  V  P  T  I  E  A  M  D  Y  Y  S  K  T  L  T  H  D  L  Y  T  M  P  S  P  R  L  F  H  T  H  L  P  Y  R  V  L  P  D  S  I  K  N  S  D  N  C  K  I  I  Y  I  T  R  N  P  K  D  T  L  I  S  M  W  H  F  F  N  N  R  K  R  L  E  D  L  T  P  L  E  E  V  V  E  N  F  C  K  G  V  H  L  Y  G  P  F  F  E  H  V  L  E  Y  W  E  E  S  K  K  K  P  Q  K  I  L  F  L  K  Y  E  D  L  K  I  D  P  K  K  E  V  A  K  I  A  L  F  L  G  K  P  F  G  N  E  E  D  L  E  I  V  L  N  K  C  S  L  E  R  L  K  N  L  E  V  N  K  S  G  S  I  Y  S  S  V  H  N  S  A  F  F  R  K  G  I  V  G  D  W  K  N  Y  M  K  L  E  M  E  E  Q  L  D  K  I  T  K  L  K  L  Q  G  S  D  L  E  L  *  Y  L  *  T  R  S  M  E  S  T  Q  E  L  L  D  V  N  Y  *  Y  H  S  *  I  I  G  N  L  K  N  I  H  L  F  V  L  L  N  L  N  T  P  *  S  T  T  *  H  S  K  W  F  </second_frame>
            <third_frame>   F  F  K  K  I   : N  *  K  K  V  G  I  E   : V  H  H  Q  L  *  I  M  K  K  *  R  E  L  *  S  N  C  P  K  L  I  I  F  G  I  I  I  N  F  I  S  G  K  G  F  G  L  L  L  S  F  *  R  Q  P  W  S  S  K  Q  P  S  N  Q  N  Q  M  M  F  S  W  H  L  P  *  K  Q  :  V  Q  H  G  S  R  P  Y  V  Y  P  S  C  K  L  V  I  K  R  K  T  K  K  I  F  *  L  R  I  I  L  I  F  M  F  Q  Q  *  R  P  W  I  I  I  Q  K  L  *  L  M  I  Y  T  Q  C  P  L  Q  D  Y  F  T  H  I  Y  L  I  G  F  C  Q  I  Q  L  K  I  R  I  I  A  R  L  Y  T  *  Q  E  I  L  K  I  L  *  F  L  C  G  I  S  S  T  I  V  S  V  *  K  I  S  L  L  *  K  K  L  W  R  T  F  A  K  G  F  I  Y  M  D  P  F  L  N  M  F  L  N  I  G  K  K  A  K  K  S  L  K  R  Y  Y  S  *  S  M  K  T  *  R  *  T  L  R  K  R  W  Q  R  *  P  C  F  L  E  S  L  L  V  M  K  R  I  W  R  *  F  *  T  S  V  A  W  R  G  L  R  I  W  R  L  I  R  V  D  Q  S  T  L  L  S  T  I  V  H  F  L  E  K  E  L  L  G  I  G  R  I  T  *  S  L  K  W  K  S  N  L  T  R  L  P  N  *  S  F  K  G  V  T  L  N  F  D  I  Y  K  Q  E  V  W  K  A  H  R  N  Y  L  T  *  I  I  S  I  I  L  E  *  L  G  I  L  K  T  F  I  Y  L  S  Y  S  T  *  I  H  P  D  L  P  H  S  I  A  N  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113850" stop="113872"/>
                    <exon start="114395" stop="114597"/>
                    <exon start="114866" stop="115611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKSRDRSASPIVNNEEIERIIEQLPKIDYFWNNYQLYQWEGFWSTLIILKAAMVFKATFKSKPNDVLLASSMKTGSTWLKAICVSIMQAGNKEEDEEDLLVKDNPHFYVPTIEAMDYYSKTLTHDLYTMPSPRLFHTHLPYRVLPDSIKNSDNCKIIYITRNPKDTLISMWHFFNNRKRLEDLTPLEEVVENFCKGVHLYGPFFEHVLEYWEESKKKPQKILFLKYEDLKIDPKKEVAKIALFLGKPFGNEEDLEIVLNKCSLERLKNLEVNKSGSIYSSVHNSAFFRKGIVGDWKNYMKLEMEEQLDKITKLKLQGSDLEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103263" e_stop="103601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103263" e_stop="103601" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103263" stop="103601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103306" stop="103601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTAAATTCTTGATGTTTTTCACCCATGTGGCAAAGATGGGATGTGTATTTAAGTTTTAGTTACTCAAGTAGCAACAGGTGTTTTCAAAGCTGTCAATAATTCGGGAACGAAACTAATAATTCACGTCAAATTTAAGTGTGTTTTTAATACTTCTTTCTTATAATTTCTACTTTAACAAGCTTTCTATTACTTCATCCGAATGGATAATAAGTCAAGGTTGTTGAAAATAATAAAGTTAAATGTTTTTAACCATCTTCACAAGTCTTTAGTTATTTGTAAGATATGAGTATTAAAATATCTCTTACTAGTTGACACCTATAAAAATTTACCCTTTGTA</gDNA_template>
            <first_frame> P  *  I  L  D  V  F  H  P  C  G  K  D  G  M  C  I  *  V  L  V  T  Q  V  A  T  G  V  F  K  A  V  N  N  S  G  T  K  L  I  I  H  V  K  F  K  C  V  F  N  T  S  F  L  *  F  L  L  *  Q  A  F  Y  Y  F  I  R  M  D  N  K  S  R  L  L  K  I  I  K  L  N  V  F  N  H  L  H  K  S  L  V  I  C  K  I  *  V  L  K  Y  L  L  L  V  D  T  Y  K  N  L  P  F  V </first_frame>
            <second_frame>  L  K  F  L  M  F  F  T  H  V  A  K  M  G  C  V  F  K  F  *  L  L  K  *  Q  Q  V  F  S  K  L  S  I  I  R  E  R  N  *  *  F  T  S  N  L  S  V  F  L  I  L  L  S  Y  N  F  Y  F  N  K  L  S  I  T  S  S  E  W  I  I  S  Q  G  C  *  K  *  *  S  *  M  F  L  T  I  F  T  S  L  *  L  F  V  R  Y  E  Y  *  N  I  S  Y  *  L  T  P  I  K  I  Y  P  L   </second_frame>
            <third_frame>   L  N  S  *  C  F  S  P  M  W  Q  R  W  D  V  Y  L  S  F  S  Y  S  S  S  N  R  C  F  Q  S  C  Q  *  F  G  N  E  T  N  N  S  R  Q  I  *  V  C  F  *  Y  F  F  L  I  I  S  T  L  T  S  F  L  L  L  H  P  N  G  *  *  V  K  V  V  E  N  N  K  V  K  C  F  *  P  S  S  Q  V  F  S  Y  L  *  D  M  S  I  K  I  S  L  T  S  *  H  L  *  K  F  T  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0298C03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111570" e_stop="111797"/>
            <exon e_start="112465" e_stop="112579"/>
            <exon e_start="112654" e_stop="113002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="111570" e_stop="111797" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111798" i_stop="112464" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112465" e_stop="112579" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="112580" i_stop="112653" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="112654" e_stop="113002" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111570" stop="111797"/>
              <exon start="112465" stop="112579"/>
              <exon start="112654" stop="113002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAACCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATTTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG : ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</gDNA_template>
            <first_frame> L  L  N  F  E  N  Q  N  L  C  S  P  S  V  N  L  R  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  F  V  R  H  F  C  L  L  C  P  P  *  K  I  K  S  P  I  S  S  T  L  S  A  I  F  V  Q  Y  S  *  K  :  I  G  Q  H  W  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  E  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  I  F  F  C  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  *  N  Y   </first_frame>
            <second_frame>  F  S  I  L  K  I  K  I  C  A  L  H  P  S  T  F  V  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  S  N  R  Q  F  R  L  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  G  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  S  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  K  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  F  F  F  V  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F  K  I  I  </second_frame>
            <third_frame>   S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  T  L  S  A  L  K  N  Q  I  A  N  F  V  Y  S  V  R  H  F  R  P  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  V  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  R  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  F  F  L  F  F  G  V  K  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F  L  K  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111662" stop="111797"/>
                    <exon start="112465" stop="112579"/>
                    <exon start="112654" stop="112693"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSTLSALKNQIANFVYSVRHFRPIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112657" stop="112881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILSDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMKNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="102971" e_stop="103221"/>
            <exon e_start="105235" e_stop="105247"/>
            <exon e_start="112460" e_stop="112464"/>
            <exon e_start="115770" e_stop="116076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.440" e_score="0.956"/>
          <exon-intron don_prob="0.900" acc_prob="0.989" e_score="0.538"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="102971" e_stop="103221" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.440">
            <gDNA_intron_boundary i_start="103222" i_stop="105234" i_length="2013"/>
          </intron>
          <exon e_serial="2" e_score="0.538">
            <gDNA_exon_boundary e_start="105235" e_stop="105247" e_length="13"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105248" i_stop="112459" i_length="7212"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="112460" e_stop="112464" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112465" i_stop="115769" i_length="3305"/>
          </intron>
          <exon e_serial="4" e_score="0.870">
            <gDNA_exon_boundary e_start="115770" e_stop="116076" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102971" stop="103221"/>
              <exon start="105235" stop="105247"/>
              <exon start="112460" stop="112464"/>
              <exon start="115770" stop="116076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGGATTGTTGGGGATTGGAAGAATTACATGAAACCTGAAATGGAAGAGCAAATTGACAAGATTACCAAATTGAAGCTTCAAGGGAGTGGCCTTGAACTCTGATACTTGTACCCAAGAAGTTTTTAAAACACACTTGAACTACTTGACGTGAATTATTAGTATCATTTTTGAATTATCGATAGTTTTAAAAACGTCCATCTATTTGGCTAATTCAACTTAAGTACACCTCGATCTGCCACACAGCATA : ACACATCACACAC : AACAG : TATCCTTGTACGAGCGTGAGACTCTTAATAAAAAGTCGAGAGAAGTTTTGAAAACATCCCAAAATTTGACGAGAATTAGGGATGTATTTCACTCGTATGGCAAGATTAGGATTAAGGTGTATTTAAGTTCAATTAGTCAAGTAGAATGATATTTTTATGGCCGTCAATAGTTCAGAAATAAAACTAATAATTTACGCCAAGTTTAGAAATGTTTTTACAATACTTCTCTCTTCTTATAATTACTACTTTAAATAAGGTTTTCTATTATTTCATCCGAATGAATAATAAGTCAAGGTTGTTGAAAATA</gDNA_template>
            <first_frame> K  R  D  C  W  G  L  E  E  L  H  E  T  *  N  G  R  A  N  *  Q  D  Y  Q  I  E  A  S  R  E  W  P  *  T  L  I  L  V  P  K  K  F  L  K  H  T  *  T  T  *  R  E  L  L  V  S  F  L  N  Y  R  *  F  *  K  R  P  S  I  W  L  I  Q  L  K  Y  T  S  I  C  H  T  A  * :   H  I  T  H  :  N  S :   I  L  V  R  A  *  D  S  *  *  K  V  E  R  S  F  E  N  I  P  K  F  D  E  N  *  G  C  I  S  L  V  W  Q  D  *  D  *  G  V  F  K  F  N  *  S  S  R  M  I  F  L  W  P  S  I  V  Q  K  *  N  *  *  F  T  P  S  L  E  M  F  L  Q  Y  F  S  L  L  I  I  T  T  L  N  K  V  F  Y  Y  F  I  R  M  N  N  K  S  R  L  L  K  I </first_frame>
            <second_frame>  K  G  I  V  G  D  W  K  N  Y  M  K  P  E  M  E  E  Q  I  D  K  I  T  K  L  K  L  Q  G  S  G  L  E  L  *  Y  L  Y  P  R  S  F  *  N  T  L  E  L  L  D  V  N  Y  *  Y  H  F  *  I  I  D  S  F  K  N  V  H  L  F  G  *  F  N  L  S  T  P  R  S  A  T  Q  H   : N  T  S  H  T :   T   : V  S  L  Y  E  R  E  T  L  N  K  K  S  R  E  V  L  K  T  S  Q  N  L  T  R  I  R  D  V  F  H  S  Y  G  K  I  R  I  K  V  Y  L  S  S  I  S  Q  V  E  *  Y  F  Y  G  R  Q  *  F  R  N  K  T  N  N  L  R  Q  V  *  K  C  F  Y  N  T  S  L  F  L  *  L  L  L  *  I  R  F  S  I  I  S  S  E  *  I  I  S  Q  G  C  *  K   </second_frame>
            <third_frame>   K  G  L  L  G  I  G  R  I  T  *  N  L  K  W  K  S  K  L  T  R  L  P  N  *  S  F  K  G  V  A  L  N  S  D  T  C  T  Q  E  V  F  K  T  H  L  N  Y  L  T  *  I  I  S  I  I  F  E  L  S  I  V  L  K  T  S  I  Y  L  A  N  S  T  *  V  H  L  D  L  P  H  S  I  :  T  H  H  T   : Q  Q  :  Y  P  C  T  S  V  R  L  L  I  K  S  R  E  K  F  *  K  H  P  K  I  *  R  E  L  G  M  Y  F  T  R  M  A  R  L  G  L  R  C  I  *  V  Q  L  V  K  *  N  D  I  F  M  A  V  N  S  S  E  I  K  L  I  I  Y  A  K  F  R  N  V  F  T  I  L  L  S  S  Y  N  Y  Y  F  K  *  G  F  L  L  F  H  P  N  E  *  *  V  K  V  V  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103185" stop="103221"/>
                    <exon start="105235" stop="105247"/>
                    <exon start="112460" stop="112464"/>
                    <exon start="115770" stop="115918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNLSTPRSATQHNTSHTTVSLYERETLNKKSREVLKTSQNLTRIRDVFHSYGKIRIKVYLSSISQVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 151 chains have been computed
$ 
$ memory statistics:
$ 248320 bytes spliced alignments in total
$ 60 spliced alignments have been stored
$ 4138 bytes was the average size of a spliced alignment
$ 18264 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1826 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 172 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:25:12
-->
