<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:25:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g69420" ref_strand="+" ref_description="C2_At1g69420">
      <seq>agacatgaggagtcttctcagcaacagttgagtgaagatggcatgttctactgcagtttgtgtgaagtagaggtatttaaatacagcaagcattgcagagtatgtgacaagtgcgtcgatcagtttgaccatcattgcaggtggataaacaactgtatagggaaaaggaactatcgcaagttctttgcgctcatggtttcagccctcctgctgcttatacttcagtggtcaactggaattcttgtactaatctgctgctttatcgagaagaagaaattttctgcggaaatcacctccaaattaggaagcagtttctccattgttccttttgttattgtagtggctgtctgtaccatcttggccatgatagcaaccctgccactagctcaacttttcttctttcacatacttctcataaagaagggaattagcacctatgactacatcattgctctcagagatcaagagcaacaaggagttgcaggtcagcaaagtccacaaatgtctactgttagctccctaactggattaagcagtgcaagctccttcaatactttccatcgagcagcatggtgcacaccacctcgcctttttgttgaggatcagtatgatgtagttcctcctgatacagtatcggtcagttcacttgggaaaaggtcaatggcggatgaacctatcaagaaaaagaatccagctgccgtgaagattagcccatggacactagcacgattaaatgcggaggatgtttcaaaagctgctgctgaagcaaggaaaaaatcgaaaattcttcagtcagtggtgagaaacaaagaaccttacattcttgaaacaaatagcagtttaggaagtagcgggcgtcgcatggtgcctaggcttgataacaatagaaggagagctagtaaacgagttagactccctgcagagttaccctttgaaaccatgagtaaaattcccaatgatatagctcaaaacagcagaagacccatgctaactgagtcatcaagcagtttagctccccttcagcttgaagcacggagtgatttccgaacaacccgaggactgtccacctcaggtgttgttgttgcttcttcacctgagagtagtttggactctcctgacattcacccactccggatgtcatcctcaggagttgaagatgctgcacgtcttgtaggtcacctatcatctggaatgactcttcaaaaggatacaccattgtctagatcaactagtgatggatacgaggcatctggtggggaggatagtgatcgtgtgcctacccgaattgtgcaaaggtcaacaaggtggagtagcattctttttggttctgatcaacaagatgatagagtcagaagattgatggtcccgtcttcatcaacccaggctaacatcaggaagcattaagcctccaaacatacttgggaattcttctgtaagctcttgaagctacatgatctgttgacatttcttaatttgttgatgatgtttgtccagtagtatataccatcaacttggtctgttccattgtccattgagttcaatttttggatttttgggtgagagaagtgctgtaaatgtctagtggaaaaaacattatgtctattctcttgtcctcaaaatgcagagcattcaatgatcagttcttgctgccatcacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1837" stop="6548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2137" g_stop="2208" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="141" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2891" g_stop="2962" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="213" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3384" g_stop="3512" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="342" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4006" g_stop="4086" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="423" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4173" g_stop="4355" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="606" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5196" g_stop="6249" g_length="1054"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="1660" r_length="1054" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="C2_At1g69420" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g69420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2137" e_stop="2208"/>
          <exon e_start="2707" e_stop="2775"/>
          <exon e_start="2891" e_stop="2962"/>
          <exon e_start="3384" e_stop="3512"/>
          <exon e_start="4006" e_stop="4086"/>
          <exon e_start="4173" e_stop="4355"/>
          <exon e_start="5196" e_stop="6249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAGGTTTGTAACTTCACATCCCATCATTTCTCGTGCTTCCACTTTGAGGCATTATTATGTACTGAATTTAGAATTATTCCGCAAGAAATCTTGTTGTAAAACAAACATATACTCCCGCCGCTTCAATTTGTTTGTTGGTTTTGACTTGGCATGGAGTTAATGAAAGTAAATATGACTTTTGGATCTTGTGGTCTTAAGCTAAAGATATGTTGAATGAACCAAAATGCTCTTTAATCTTGTGGTTTTGAACATGTCATGTCAAAAGTTAGAAATAAATAATTGCCAAAAACAAGACTTCTTTGTTTTGGAACAGACTAAAGAAGGAAGGAAGTCAAACAAATTGAAAGGAAGACAGTATTATTTTTTGTTTTTCACTTGGTATAATAATTCTCAATTTTGCTTAAAACTGATGTTCTTAGCTTGATAGACCTGTTCTTATTATAGTAAGATTGCTATAATGCCTGTTCATATGATATGCTCAATGCTGGATGACACTTGCAGGTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGGGTATTTGACAACCTTGAGTAGTCTGAAATGTCGTATATACATCATAGATGCTCGACTGTGTCGACGTTTATGTAAAAACTTATTAATCTTATTTTTCTGTTTTTGGTTTCTGTAGTGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTGGTATGATCAAGCTCTCTTTGCTAGCTTTTATTGTGCTTACACATTTCTACAGATTCTATGCTAGGTCATGAGTCCGACATGCTATTGGAATGTTTCTTCCATCTGAAAGGTTTATCCATTACCTGAAATTTGAAATGACATCTTCAATTTTAAATCAGTCATTTCTTAACTTTATCTTTCTCTCCCTCAGTCCTCCTAGCCCCTGTCTCCTTTACTTCCTTTTGGTTATTGCTTATGCGCACCACTTGAGAACTGTCATACAAAGAACCTCCTTTTCTATTTTCTTCTTGTTTCCGGAAGAAAACTTACCCACAATCAGAGTCACCTCTGATACTTTAAGCGTTTCATATTTGTGCATTTTCCATTTAATTGACTATTGACAGGTCTACTTGGTTTGTGCACTTTGGACTTGAGATTGCAGCTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTGGTGAGTATACTTGCACTTTCCCCTTATGTCAGTACCTATATTCCTTTCATGCCATTATTATAGTTTTATTTTGGGTAAGGGAGTAGTAAGCAGGAAAAGAAGCAACAAAACTGTTCATACCAATACTAACTTGTGTTAGAAAATGAAGTGTTGAAGTATGTGACCATCTTAACTAAAAACTCAAGTTGTAGCATATTTTTATTTGCTTAATTATGTCTCCAACACAACCCTTTACGTGCGGGCTTGATTTTTTTCCTTGATCCAAATACATGGAAATTCTTTTTAATAGTGGCTGGTGAGATCAAACCTAGAACCTGTACTTACTCCAAGACCATGATAAAGTCTGTGACCATTTCATCTAAAAGTTAAAGCGGTTTGAGAGAAGACACTATTATTTGTTAAAGCATGTCTACAATGTTACTAAACTACAGGGGTTGGTTTTTGTATAATTTTATATCTGAAATGTGTCTGAAGTTAGTTCTACATGTAACAGGCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAGGTTAGTCCTTTGTCATCACTCATCTGGTGATCCTATCTTGTGGCTCTTTTTCTTAAAAATTGTCTGACTGTTTGCGTGGATGGCAGGGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAGGTATGGTTCAAGAAAAAATCTAATATGACAAGTTCGAGTAATTTAGTAGTACTAAACAGTTGGTTATGGTATCAGCAGACCTTCATTGAGTTTGCAGTGTGAATTTATAATTATCTTTTAGTTGGTTATGGTGTTAGCAGCCCTTTAGTGAGTTTGTGGTGCTTATTTTTGTAAAAGTCTTTCAGTTGGCTTCTCATATTTGAATTTAGTTTCTATTTCACATTTCTTAGCTTCAATTCCATAACTAATCAAAAGAAAAGAAATTCTATTTAGCCCGGTAATGTGGAAAATGCTTTGCCGGCTTGTGGATAGAGGCTCTTTGAAGTGGACTCCTGCAAGAAAGTATGTTCAGTATTTTGGCTCTTCTGTTGTCAAAAGAGATTTTAGAAAATTAAACCTTGTGCTGGTGCCGTGAAGGTTTGCGAATTTTTCCTTGTGAGGACAGTAATCCACTTTGACAGATAGCAAATCCTGAACAGTTCTCTCTTAAGTTGATTCTTTGGTGTGGCTGTTACAACCATTAAGGGATTCTGTGGTTGTGATTGGTATAAGGTAGGACTCATATGGTCTGGTTATTGTTAGAGATTGAGAATGACATAGCATTGAGAGATTTAAGAGGGATTGTTTTTTTATGCTTGACACATTCTGTTTGATGTAATATTTCCAATTCTGTTTTTTTTTCTTTCCTCATATAAAAGCCGAAGGGACTTGAGCAATTTTCCTCTACAGTAGTATCAAGTATATTTCTTGAGCTGGGTAGTGTATGCGTTGATGCTTTTGTATAGGTGAATAGGAAAAGGTTAATGTACTTTCGTTTAACTTTTTGGTGGTTCCCTGCAGTATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAG</genome_strand>
        <mrna_strand>AGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG...................................................................................................................TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG......................................................................................GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGTCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG96-F" ref_strand="+" ref_description="TG96-F">
      <seq>accaatgcaatatcattttttatttctaaataaatatatttttaataatacttttagttatttcatcttttattttacagaaaaatactttaatttttgaatttatcaaagatatttttgttttatataattaaaaggatgttatattgggataataattattactattatggttatattgtttatggtggtggttattataataagaaaattttatctacataaatgaatttttacaataaaaattaaataaataagtactacttaattaagggtagcagacatctacaaggtaataatttttttttatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="-" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="58444" stop="57532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58144" g_stop="57831" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="-" ref_id="TG96-F" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="-"/>
        <rDNA rDNA_id="TG96-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58144" e_stop="57831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGCAATATCATTTTTTATTTCTAAATAAATATATTTTTAATAATACTTTTAGTTATTTCATCTTTTATTTTACAGAAAAATACTTTAATTTTTGAATTTATCAAAGATATTTTTGTTTTATATAATTAAAAGGATGTTATATTGTGATAATAATTATTACTATTATTGTTATATTGTTTATTGTTGTTGTTATTATAATAAGAAAATTTTATCTACATAAATGAATTTTTACAATAAAAATTAAATAAATAAGTACTACTTAATTAAGTGTAGCAGATATCTACAATGTAATAATTTTTTTTTATTTGT</genome_strand>
        <mrna_strand>ACCAATGCAATATCATTTTTTATTTCTAAATAAATATATTTTTAATAATACTTTTAGTTATTTCATCTTTTATTTTACAGAAAAATACTTTAATTTTTGAATTTATCAAAGATATTTTTGTTTTATATAATTAAAAGGATGTTATATTGGGATAATAATTATTACTATTATGGTTATATTGTTTATGGTGGTGGTTATTATAATAAGAAAATTTTATCTACATAAATGAATTTTTACAATAAAAATTAAATAAATAAGTACTACTTAATTAAGGGTAGCAGACATCTACAAGGTAATAATTTTTTTTTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g26660" ref_strand="+" ref_description="C2_At1g26660">
      <seq>ttactctgtggaagggtgacaatcgcaaaaagctcagattttgctgcgaagcttcaatttggacaaaggattgcgatggacactattaaacaagaaaaagtaaggagatttgaggagtttattgatcgccgtctgaaaccagatcttgttcacgcaattgctgaacgggacaaggtctttgaacaacaaaagattttctctgatttaagacgtaatatagagaatttggagaagaacaatgtaactaatctgaagacattggttaatattggctctgaagtatacctgcaagctgatgtcccagatacaacacgcatatttgttgatgttggacttggatttcatgtggagtttacttggtcagaagctctaaattatatatcagcaagggaggagaaactagccaggcaaatagaggaatatacacatctagttgcatcaattaaggcccagatcaagatggtttgtgaagggatccgtgagttgcttcagattccaccagaacgagcttactaaggtgtatacgtcttaaattgctaaagaagaggggatttaccgcgacaagggacccaaaaagtgaaaaacaaaaccaacataatcttctatccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0298C03-x0OTi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0298C03.2" temp_strand="+" temp_description="C05HBa0298C03.2  AC212303.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0298C03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91029" stop="95308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91329" g_stop="91396" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91397" i_stop="92416" i_length="1020">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92417" g_stop="92515" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="167" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92516" i_stop="93068" i_length="553">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.603" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93069" g_stop="93098" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="197" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93099" i_stop="93285" i_length="187">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93286" g_stop="93387" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="299" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93597" g_stop="93704" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94684" g_stop="94738" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="462" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94739" i_stop="94858" i_length="120">
            <donor d_prob="0.840" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94859" g_stop="95008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="612" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0298C03.2" gen_strand="+" ref_id="C2_At1g26660" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0298C03.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g26660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91329" e_stop="91396"/>
          <exon e_start="92417" e_stop="92515"/>
          <exon e_start="93069" e_stop="93098"/>
          <exon e_start="93286" e_stop="93387"/>
          <exon e_start="93597" e_stop="93704"/>
          <exon e_start="94684" e_stop="94738"/>
          <exon e_start="94859" e_stop="95008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAGGTAACAATGGCTTATTCTTATATTCTCATTACATTGCTATTGAGGCAGCACTACTATTGGTGCTGAGTAAAATTTTTCCCTCTTTTGGTGAAGTATTAGCAGAAAGATAAATACTTTATACAATGGAGGTACGAGTACTTCGAGAGTCTCTCAAGGCTTGGGGATTGCAATAATGGTGTGTGATATCATAAATTATCCATATTTGGTTTAGCAAAGTAATGCCCTATGTAGCATTACAAAGAAAATTAACAAATAGAAAGGATGAATACACAACTGAAGATTAGTTAATCATTTACGCCCCTGTATGTCCGTACTCGGAAATACTGACCATTAGAAAAGAAGTTAAGCTAATATTGGTGGTTCATTGGGTGGAGTGTGGTAGGGCTTTTAACCAAACCAACTAGGTAAAAGAAAGAGAAGAAGAGATTCTAATCGACATGTTACTTGAAACCAATAGTCATGACATCTGAAGCTACATTCTTGAGATAGTGTCTTTTCACAAGTTTTGCTTTGATCAAATCCATCTATATGTAGTATGTAAAGTTGAAATAATTTGCCAATAAATTAAGTGTTGAAGTACATTCTTTACGTTTGTTGTCATTTTATCTAAGTTAAGGGGTGATTTTATTATTTCCTTTCTTTACTTGTAGAAAATGATACGATAAATTATTATATCACCTATTTTTTGATGTTGTGCAAGGCGTGTCATTTTCTTCATTCAGATTTTAGGAAGATTATAGCATTAATACCTGCGGGAAAAAAAAACTTAATATAGATAGATCCTCAATTGGAAAAGGTTCTCGCTTAGTGAAAGAAGGCCATGATAAGAATGCCAAATGGCGTAAAATCTATGATCATATGACATGGCACTTTAAACTCTAATCTATGTGGAAATTAGGGTTCTAACAGGGACTTTTCACTGTCTTCGGATGCTGGAGTCATCTCACGTCTTAGTTTCTTGTAGTCTTATCTTTGATATGATGGTTAAGTTTTTTCTAACATGATTTTATCTTGTAATAGGATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACGGTAGTAATAAATATATCATTCACTTCAGTTTTCCTGAATTCGTTTTCTATTACATATACATTTATTTGTTTTGGGGACTTCTTATCTCATTTACTGTTCAACCCTTTTCCTTGAATGAGAAAGATGTTTTTCAACTAAACACTTGTCTTATTAATGGGAATGGATCTTTGATGACCTTTAGATAAAAGGTCTTTTCAAGAATATTCTCGTTTTGGTGGTTCTAAGAATGTTCTTTCAAAACTTATTTGCCATGTTGTATTAATGGTCCAATTGTGTAGTGGAATAAAAACTAACTAAATGTATTCATGTCCTGGTTATTTTTTGGTCATCGAAATGGGGCTTAAATCCGCATTGTCATACACATAAATTTTAACATTTATATGTGTGAAGAACGGGGACTTCCAAACATTGCATAGGAAGTAATGGAATGATTTACACCCAACATTGCTAAAGTTACCTATGTATGAAAAAAGATGTAATAAGATTTTCTGCACAAAATCTTATGGTGGCCTAACTTTGTTTCATCTTGTTGCGTTCCACTTTATGGCTACAGGGACAAGGTTTTTGAACAACAAAAGATTTTGTATCCTTTTCATGTTATTATATTGTTACATTACCAACATATAGTTAGATCATTTTTTCAGTCTTTCAGACTTTTAGTAGTAGTTTGCACTTGCAGGCATGTGAGTTGATGAATTATTTAATTACTTATATGGAAATTGACGTTGGAATGAGGTCTACATAGTTTTCTTAACCATATCTTTTCTTAGCTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGTGTAAGTCTTTCTAATCTTTATTTAAATGTTTGTAGAAAATTATTGAATATATAATAGTTAAGTGATGGCTACTTTTTTTTGAATATGTATCGATACTTTTTGCTTCTTTTTTTTCATTTACAATTGAAAATCTGTATCTTGATGATTTCAAATACCTCGGTATTTTCATCCACTGCATATTGATATTTCTTCCTGAGTTGATCTGACAGCCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAGGTATTACTAATCTTTGCTTCTATCAGTAGTGTCTTATTTCCATTTGAGGACTTAAATTAACTAAAGTCATCTTCTGTTCTTAAGATTTGGAAAATAAGTGCAATGATAAATATAGCATTCAGTAAATTGGCCATCTTAAAAGTAGATCAAACACCTCAAGGAGCATTCAATAGGATGTAGAGTTGGGATCTCTTTCTTGCTAATCAGAAGAGATAGGATGTGTTTCATAAATCTAGTTACTGGTAAGTCAGGCACTTGAATAAATGGAGATGAAAAGGTACGCCAGTGTCAAAGGCATGTAGTTAGTAGCATATTTTAATAGCCATCACGCCATTTTCCATGCAATGGACTGAGTCTGGCTAGGTGGAGGAATATGCACCAATTCAGAGTCATAAAAGTTCTCAAAAAACTCAAGCCGTGAAGTTGTGAAGGAAAAGCTAAAAATCTTGTTTATGCAAAAATTGGCTACTCTAATAGAGATTTGTATAGTACTGGTAAAGCTAAAATCTCCTGAACTACCACCTTAATTACGATCCAATGACAGCATAACTCAACTAACAAGTCCAAATTATTCTGCTCAAGCATGTTTTTTGTTTTCCAGTTTGGATAAACTTTAATTAGACTCTGCTATTAATTAAAAGATAGGAAGATCGAATATGAGCATGTGAATATTAATGTCTAATCAGCTTAGATGTTTGTGCTTATTTTGCTCCCCCTTCTCTATTTTCACTTTAAGTTTCTTGGTATTGGAACCAACTAGTTCAGCTCTTGTTTTTTTTCTGGAGTGGATGGAAGTGAATGATGGGTGCGTTTTTGAACCTTTCACATTCAAAAAAGAGGAAAAACCTTCTCCGCATGTTTTCTTTCATTTTTCCATGTTTTGAGTGGAAACACTCTGTTCAACAGTTCAAAAGATATTCTTCTGAGCCATGTTTCTTGCCTTAAACTAAATGTAGATCTTTTGCAATCAAATGTGCAGGCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATGGTATGTGTTTCAATTGTTCACATAATATGAAGTCGTGTGAGAGATAAACCGGACCTTTCTTTTATGCTCTTGATTAAATTACACTTTGATTAATATTTAATTTAAAAAACTCGAATGCAGGTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGTGAAGAACAAAGCCAACATAATCTTCTATCCATTG</genome_strand>
        <mrna_strand>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCACGCAATTGCTGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGTCTTTGAACAACAAAAGATTTT...........................................................................................................................................................................................CTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT.................................................................................................................................................................................................................CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGAGGAATATACACATCTAGTTGCATCAATTAAGGCCCAGATCAAGATG........................................................................................................................GTTTGTGAAGGGATCCGTGAGTTGCTTCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGTGAAAAACAAAACCAACATAATCTTCTATCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2137" PGL_stop="6249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2137" e_stop="2208"/>
            <exon e_start="2707" e_stop="2775"/>
            <exon e_start="2891" e_stop="2962"/>
            <exon e_start="3384" e_stop="3512"/>
            <exon e_start="4006" e_stop="4086"/>
            <exon e_start="4173" e_stop="4355"/>
            <exon e_start="5196" e_stop="6249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2137" e_stop="2208" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2209" i_stop="2706" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2707" e_stop="2775" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2776" i_stop="2890" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2891" e_stop="2962" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2963" i_stop="3383" i_length="421"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3384" e_stop="3512" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3513" i_stop="4005" i_length="493"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4006" e_stop="4086" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4087" i_stop="4172" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4173" e_stop="4355" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="4356" i_stop="5195" i_length="840"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="5196" e_stop="6249" e_length="1054"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2137" stop="2208"/>
              <exon start="2707" stop="2775"/>
              <exon start="2891" stop="2962"/>
              <exon start="3384" stop="3512"/>
              <exon start="4006" stop="4086"/>
              <exon start="4173" stop="4355"/>
              <exon start="5196" stop="6249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g69420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGAGGAGTCTTCTCAGCAACAGTTGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTAGAG : GTATTTAAATACAGCAAGCATTGCAGAGTATGTGACAAGTGCGTCGATCAGTTTGACCATCATTGCAGG : TGGATAAACAACTGTATAGGGAAAAGGAACTATCGCAAGTTCTTTGCGCTCATGGTTTCAGCCCTCCTGCTG : CTTATACTTCAGTGGTCAACTGGAATTCTTGTACTAATCTGCTGCTTTATCGAGAAGAAGAAATTTTCTGCGGAAATCACCTCCAAATTAGGAAGCAGTTTCTCCATTGTTCCTTTTGTTATTGTAGTG : GCTGTCTGTACCATCTTGGCCATGATAGCAACCCTGCCACTAGCTCAACTTTTCTTCTTTCACATACTTCTCATAAAGAAG : GGAATTAGCACCTATGACTACATCATTGCTCTCAGAGATCAAGAGCAACAAGGAGTTGCAGGTCAGCAAAGTCCACAAATGTCTACTGTTAGCTCCCTAACTGGATTAAGCAGTGCAAGCTCCTTCAATACTTTCCATCGAGCAGCATGGTGCACACCACCTCGCCTTTTTGTTGAGGATCAG : TATGATGTAGTTCCTCCTGATACAGTATCGGTCAGTTCACTTGGGAAAAGGTCAATGGCGGATGAACCTATCAAGAAAAAGAATCCAGCTGCCGTGAAGATTAGCCCATGGACACTAGCACGATTAAATGCGGAGGATGTTTCAAAAGCTGCTGCTGAAGCAAGGAAAAAATCGAAAATTCTTCAGCCAGTGGTGAGAAACAAAGAACCTTACATTCTTGAAACAAATAGCAGTTTAGGAAGTAGCGGGCGTCGCATGGTGCCTAGGCTTGATAACAATAGAAGGAGAGCTAGTAAACGAGTTAGACTCCCTGCAGAGTTACCCTTTGAAACCATGAGTAAAATTCCCAATGATATAGCTCAAAACAGCAGAAGACCCATGCTAACTGAGTCATCAAGCAGTTTAGCTCCCCTTCAGCTTGAAGCACGGAGTGATTTCCGAACAACCCGAGGACTGTCCACCTCAGGTGTTGTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAGGAGTTGAAGATGCTGCACGTCTTGTAGGTCACCTATCATCTGGAATGACTCTTCAAAAGGATACACCATTGTCTAGATCAACTAGTGATGGATACGAGGCATCTGGTGGGGAGGATAGTGATCGTGTGCCTACCCGAATTGTGCAAAGGTCAACAAGGTGGAGTAGCATTCTTTTTGGTTCTGATCAACAAGATGATAGAGTCAGAAGATTGATGGTCCCGTCTTCATCAACCCAGGCTAACATCAGGAAGCATTAAGCCTCCAAACATACTTGGGAATTCTTCTGTAAGCTCTTGAAGCTACATGATCTGTTGACATTTCTTAATTTGTTGATGATGTTTGTCCAGTAGTATATACCATCAACTTGGTCTGTTCCATTGTCCATTGAGTTCAATTTTTGGATTTTTGGGTGAGAGAAGTGCTGTAAATGTCTAGTGGAAAAAACATTATGTCTATTCTCTTGTCCTCAAAATGCAGAGCATTCAATGATCAGTTCTTGCTGCCATCACTTAG</gDNA_template>
            <first_frame> R  H  E  E  S  S  Q  Q  Q  L  S  E  D  G  M  F  Y  C  S  L  C  E  V  E  :  V  F  K  Y  S  K  H  C  R  V  C  D  K  C  V  D  Q  F  D  H  H  C  R  :  W  I  N  N  C  I  G  K  R  N  Y  R  K  F  F  A  L  M  V  S  A  L  L  L  :  L  I  L  Q  W  S  T  G  I  L  V  L  I  C  C  F  I  E  K  K  K  F  S  A  E  I  T  S  K  L  G  S  S  F  S  I  V  P  F  V  I  V  V  :  A  V  C  T  I  L  A  M  I  A  T  L  P  L  A  Q  L  F  F  F  H  I  L  L  I  K  K  :  G  I  S  T  Y  D  Y  I  I  A  L  R  D  Q  E  Q  Q  G  V  A  G  Q  Q  S  P  Q  M  S  T  V  S  S  L  T  G  L  S  S  A  S  S  F  N  T  F  H  R  A  A  W  C  T  P  P  R  L  F  V  E  D  Q  :  Y  D  V  V  P  P  D  T  V  S  V  S  S  L  G  K  R  S  M  A  D  E  P  I  K  K  K  N  P  A  A  V  K  I  S  P  W  T  L  A  R  L  N  A  E  D  V  S  K  A  A  A  E  A  R  K  K  S  K  I  L  Q  P  V  V  R  N  K  E  P  Y  I  L  E  T  N  S  S  L  G  S  S  G  R  R  M  V  P  R  L  D  N  N  R  R  R  A  S  K  R  V  R  L  P  A  E  L  P  F  E  T  M  S  K  I  P  N  D  I  A  Q  N  S  R  R  P  M  L  T  E  S  S  S  S  L  A  P  L  Q  L  E  A  R  S  D  F  R  T  T  R  G  L  S  T  S  G  V  V  V  A  S  S  P  E  S  S  L  D  S  P  D  I  H  P  L  R  M  S  S  S  G  V  E  D  A  A  R  L  V  G  H  L  S  S  G  M  T  L  Q  K  D  T  P  L  S  R  S  T  S  D  G  Y  E  A  S  G  G  E  D  S  D  R  V  P  T  R  I  V  Q  R  S  T  R  W  S  S  I  L  F  G  S  D  Q  Q  D  D  R  V  R  R  L  M  V  P  S  S  S  T  Q  A  N  I  R  K  H  *  A  S  K  H  T  W  E  F  F  C  K  L  L  K  L  H  D  L  L  T  F  L  N  L  L  M  M  F  V  Q  *  Y  I  P  S  T  W  S  V  P  L  S  I  E  F  N  F  W  I  F  G  *  E  K  C  C  K  C  L  V  E  K  T  L  C  L  F  S  C  P  Q  N  A  E  H  S  M  I  S  S  C  C  H  H  L  </first_frame>
            <second_frame>  D  M  R  S  L  L  S  N  S  *  V  K  M  A  C  S  T  A  V  C  V  K  *  R :   Y  L  N  T  A  S  I  A  E  Y  V  T  S  A  S  I  S  L  T  I  I  A  G :   G  *  T  T  V  *  G  K  G  T  I  A  S  S  L  R  S  W  F  Q  P  S  C  C :   L  Y  F  S  G  Q  L  E  F  L  Y  *  S  A  A  L  S  R  R  R  N  F  L  R  K  S  P  P  N  *  E  A  V  S  P  L  F  L  L  L  L  *  W :   L  S  V  P  S  W  P  *  *  Q  P  C  H  *  L  N  F  S  S  F  T  Y  F  S  *  R  R :   E  L  A  P  M  T  T  S  L  L  S  E  I  K  S  N  K  E  L  Q  V  S  K  V  H  K  C  L  L  L  A  P  *  L  D  *  A  V  Q  A  P  S  I  L  S  I  E  Q  H  G  A  H  H  L  A  F  L  L  R  I  S :   M  M  *  F  L  L  I  Q  Y  R  S  V  H  L  G  K  G  Q  W  R  M  N  L  S  R  K  R  I  Q  L  P  *  R  L  A  H  G  H  *  H  D  *  M  R  R  M  F  Q  K  L  L  L  K  Q  G  K  N  R  K  F  F  S  Q  W  *  E  T  K  N  L  T  F  L  K  Q  I  A  V  *  E  V  A  G  V  A  W  C  L  G  L  I  T  I  E  G  E  L  V  N  E  L  D  S  L  Q  S  Y  P  L  K  P  *  V  K  F  P  M  I  *  L  K  T  A  E  D  P  C  *  L  S  H  Q  A  V  *  L  P  F  S  L  K  H  G  V  I  S  E  Q  P  E  D  C  P  P  Q  V  L  L  L  L  L  H  L  R  V  V  W  T  L  L  T  F  T  H  S  G  C  H  P  Q  E  L  K  M  L  H  V  L  *  V  T  Y  H  L  E  *  L  F  K  R  I  H  H  C  L  D  Q  L  V  M  D  T  R  H  L  V  G  R  I  V  I  V  C  L  P  E  L  C  K  G  Q  Q  G  G  V  A  F  F  L  V  L  I  N  K  M  I  E  S  E  D  *  W  S  R  L  H  Q  P  R  L  T  S  G  S  I  K  P  P  N  I  L  G  N  S  S  V  S  S  *  S  Y  M  I  C  *  H  F  L  I  C  *  *  C  L  S  S  S  I  Y  H  Q  L  G  L  F  H  C  P  L  S  S  I  F  G  F  L  G  E  R  S  A  V  N  V  *  W  K  K  H  Y  V  Y  S  L  V  L  K  M  Q  S  I  Q  *  S  V  L  A  A  I  T  * </second_frame>
            <third_frame>   T  *  G  V  F  S  A  T  V  E  *  R  W  H  V  L  L  Q  F  V  *  S  R   : G  I  *  I  Q  Q  A  L  Q  S  M  *  Q  V  R  R  S  V  *  P  S  L  Q   : V  D  K  Q  L  Y  R  E  K  E  L  S  Q  V  L  C  A  H  G  F  S  P  P  A   : A  Y  T  S  V  V  N  W  N  S  C  T  N  L  L  L  Y  R  E  E  E  I  F  C  G  N  H  L  Q  I  R  K  Q  F  L  H  C  S  F  C  Y  C  S   : G  C  L  Y  H  L  G  H  D  S  N  P  A  T  S  S  T  F  L  L  S  H  T  S  H  K  E   : G  N  *  H  L  *  L  H  H  C  S  Q  R  S  R  A  T  R  S  C  R  S  A  K  S  T  N  V  Y  C  *  L  P  N  W  I  K  Q  C  K  L  L  Q  Y  F  P  S  S  S  M  V  H  T  T  S  P  F  C  *  G  S   : V  *  C  S  S  S  *  Y  S  I  G  Q  F  T  W  E  K  V  N  G  G  *  T  Y  Q  E  K  E  S  S  C  R  E  D  *  P  M  D  T  S  T  I  K  C  G  G  C  F  K  S  C  C  *  S  K  E  K  I  E  N  S  S  A  S  G  E  K  Q  R  T  L  H  S  *  N  K  *  Q  F  R  K  *  R  A  S  H  G  A  *  A  *  *  Q  *  K  E  S  *  *  T  S  *  T  P  C  R  V  T  L  *  N  H  E  *  N  S  Q  *  Y  S  S  K  Q  Q  K  T  H  A  N  *  V  I  K  Q  F  S  S  P  S  A  *  S  T  E  *  F  P  N  N  P  R  T  V  H  L  R  C  C  C  C  F  F  T  *  E  *  F  G  L  S  *  H  S  P  T  P  D  V  I  L  R  S  *  R  C  C  T  S  C  R  S  P  I  I  W  N  D  S  S  K  G  Y  T  I  V  *  I  N  *  *  W  I  R  G  I  W  W  G  G  *  *  S  C  A  Y  P  N  C  A  K  V  N  K  V  E  *  H  S  F  W  F  *  S  T  R  *  *  S  Q  K  I  D  G  P  V  F  I  N  P  G  *  H  Q  E  A  L  S  L  Q  T  Y  L  G  I  L  L  *  A  L  E  A  T  *  S  V  D  I  S  *  F  V  D  D  V  C  P  V  V  Y  T  I  N  L  V  C  S  I  V  H  *  V  Q  F  L  D  F  W  V  R  E  V  L  *  M  S  S  G  K  N  I  M  S  I  L  L  S  S  K  C  R  A  F  N  D  Q  F  L  L  P  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2137" stop="2208"/>
                    <exon start="2707" stop="2775"/>
                    <exon start="2891" stop="2962"/>
                    <exon start="3384" stop="3512"/>
                    <exon start="4006" stop="4086"/>
                    <exon start="4173" stop="4355"/>
                    <exon start="5196" stop="5993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHEESSQQQLSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDQFDHHCRWINNCIGKRNYRKFFALMVSALLLLILQWSTGILVLICCFIEKKKFSAEITSKLGSSFSIVPFVIVVAVCTILAMIATLPLAQLFFFHILLIKKGISTYDYIIALRDQEQQGVAGQQSPQMSTVSSLTGLSSASSFNTFHRAAWCTPPRLFVEDQYDVVPPDTVSVSSLGKRSMADEPIKKKNPAAVKISPWTLARLNAEDVSKAAAEARKKSKILQPVVRNKEPYILETNSSLGSSGRRMVPRLDNNRRRASKRVRLPAELPFETMSKIPNDIAQNSRRPMLTESSSSLAPLQLEARSDFRTTRGLSTSGVVVASSPESSLDSPDIHPLRMSSSGVEDAARLVGHLSSGMTLQKDTPLSRSTSDGYEASGGEDSDRVPTRIVQRSTRWSSILFGSDQQDDRVRRLMVPSSSTQANIRKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="58144" PGL_stop="57831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58144" e_stop="57831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="58144" e_stop="57831" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58144" stop="57831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG96-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATGCAATATCATTTTTTATTTCTAAATAAATATATTTTTAATAATACTTTTAGTTATTTCATCTTTTATTTTACAGAAAAATACTTTAATTTTTGAATTTATCAAAGATATTTTTGTTTTATATAATTAAAAGGATGTTATATTGTGATAATAATTATTACTATTATTGTTATATTGTTTATTGTTGTTGTTATTATAATAAGAAAATTTTATCTACATAAATGAATTTTTACAATAAAAATTAAATAAATAAGTACTACTTAATTAAGTGTAGCAGATATCTACAATGTAATAATTTTTTTTTATTTGT</gDNA_template>
            <first_frame> T  N  A  I  S  F  F  I  S  K  *  I  Y  F  *  *  Y  F  *  L  F  H  L  L  F  Y  R  K  I  L  *  F  L  N  L  S  K  I  F  L  F  Y  I  I  K  R  M  L  Y  C  D  N  N  Y  Y  Y  Y  C  Y  I  V  Y  C  C  C  Y  Y  N  K  K  I  L  S  T  *  M  N  F  Y  N  K  N  *  I  N  K  Y  Y  L  I  K  C  S  R  Y  L  Q  C  N  N  F  F  L  F   </first_frame>
            <second_frame>  P  M  Q  Y  H  F  L  F  L  N  K  Y  I  F  N  N  T  F  S  Y  F  I  F  Y  F  T  E  K  Y  F  N  F  *  I  Y  Q  R  Y  F  C  F  I  *  L  K  G  C  Y  I  V  I  I  I  I  T  I  I  V  I  L  F  I  V  V  V  I  I  I  R  K  F  Y  L  H  K  *  I  F  T  I  K  I  K  *  I  S  T  T  *  L  S  V  A  D  I  Y  N  V  I  I  F  F  Y  L  </second_frame>
            <third_frame>   Q  C  N  I  I  F  Y  F  *  I  N  I  F  L  I  I  L  L  V  I  S  S  F  I  L  Q  K  N  T  L  I  F  E  F  I  K  D  I  F  V  L  Y  N  *  K  D  V  I  L  *  *  *  L  L  L  L  L  L  Y  C  L  L  L  L  L  L  *  *  E  N  F  I  Y  I  N  E  F  L  Q  *  K  L  N  K  *  V  L  L  N  *  V  *  Q  I  S  T  M  *  *  F  F  F  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0298C03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="91329" PGL_stop="95008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91329" e_stop="91396"/>
            <exon e_start="92417" e_stop="92515"/>
            <exon e_start="93069" e_stop="93098"/>
            <exon e_start="93286" e_stop="93387"/>
            <exon e_start="93597" e_stop="93704"/>
            <exon e_start="94684" e_stop="94738"/>
            <exon e_start="94859" e_stop="95008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.603" e_score="0.990"/>
          <exon-intron don_prob="0.990" acc_prob="0.352" e_score="0.967"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="1.000" e_score="0.982"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91329" e_stop="91396" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91397" i_stop="92416" i_length="1020"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="92417" e_stop="92515" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.603">
            <gDNA_intron_boundary i_start="92516" i_stop="93068" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="93069" e_stop="93098" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.352">
            <gDNA_intron_boundary i_start="93099" i_stop="93285" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93286" e_stop="93387" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="93388" i_stop="93596" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93597" e_stop="93704" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93705" i_stop="94683" i_length="979"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="94684" e_stop="94738" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.840" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94739" i_stop="94858" i_length="120"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="94859" e_stop="95008" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91329" stop="91396"/>
              <exon start="92417" stop="92515"/>
              <exon start="93069" stop="93098"/>
              <exon start="93286" stop="93387"/>
              <exon start="93597" stop="93704"/>
              <exon start="94684" stop="94738"/>
              <exon start="94859" stop="95008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g26660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACTCTGTGGAAGGGTGACAATCGCAAAAAGCTCAGATTTTGCTGCGAAGCTTCAATTTGGACAAAG : GATTGCGATGGACACTATTAAACAAGAAAAAGTAAGGAGATTTGAGGAGTTTATTGATCGCCGTCTGAAACCAGATCTTGTTCATGCAATTGCTGAACG : GGACAAGGTTTTTGAACAACAAAAGATTTT : CTCTGATTTAAGACGTAATATAGAGAATTTGGAGAAGAACAATGTAACTAATCTGAAGACATTGGTTAATATTGGCTCTGAAGTATACCTGCAAGCTGATGT : CCCAGATACAACACGCATATTTGTTGATGTTGGACTTGGATTTCATGTGGAGTTTACTTGGTCAGAAGCTCTAAATTATATATCAGCAAGGGAGGAGAAACTAGCCAG : GCAAATAGAGGAATATACACGTCTAGTTGCATCAATTAAGGCCCAGATCAAGATG : GTTTGTGAAGGGATCCGTGAGTTGCTCCAGATTCCACCAGAACGAGCTTACTAAGGTGTATACGTCTTAAATTGCTAAAGAAGAGGGGATTTACCGCGACAAGGGACCCAAAAAGTGAAGAACAAAGCCAACATAATCTTCTATCCATTG</gDNA_template>
            <first_frame> L  L  C  G  R  V  T  I  A  K  S  S  D  F  A  A  K  L  Q  F  G  Q  R :   I  A  M  D  T  I  K  Q  E  K  V  R  R  F  E  E  F  I  D  R  R  L  K  P  D  L  V  H  A  I  A  E  R :   D  K  V  F  E  Q  Q  K  I  F :   S  D  L  R  R  N  I  E  N  L  E  K  N  N  V  T  N  L  K  T  L  V  N  I  G  S  E  V  Y  L  Q  A  D  V :   P  D  T  T  R  I  F  V  D  V  G  L  G  F  H  V  E  F  T  W  S  E  A  L  N  Y  I  S  A  R  E  E  K  L  A  R :   Q  I  E  E  Y  T  R  L  V  A  S  I  K  A  Q  I  K  M  :  V  C  E  G  I  R  E  L  L  Q  I  P  P  E  R  A  Y  *  G  V  Y  V  L  N  C  *  R  R  G  D  L  P  R  Q  G  T  Q  K  V  K  N  K  A  N  I  I  F  Y  P  L </first_frame>
            <second_frame>  Y  S  V  E  G  *  Q  S  Q  K  A  Q  I  L  L  R  S  F  N  L  D  K   : G  L  R  W  T  L  L  N  K  K  K  *  G  D  L  R  S  L  L  I  A  V  *  N  Q  I  L  F  M  Q  L  L  N   : G  T  R  F  L  N  N  K  R  F   : S  L  I  *  D  V  I  *  R  I  W  R  R  T  M  *  L  I  *  R  H  W  L  I  L  A  L  K  Y  T  C  K  L  M   : S  Q  I  Q  H  A  Y  L  L  M  L  D  L  D  F  M  W  S  L  L  G  Q  K  L  *  I  I  Y  Q  Q  G  R  R  N  *  P   : G  K  *  R  N  I  H  V  *  L  H  Q  L  R  P  R  S  R  W :   F  V  K  G  S  V  S  C  S  R  F  H  Q  N  E  L  T  K  V  Y  T  S  *  I  A  K  E  E  G  I  Y  R  D  K  G  P  K  K  *  R  T  K  P  T  *  S  S  I  H   </second_frame>
            <third_frame>   T  L  W  K  G  D  N  R  K  K  L  R  F  C  C  E  A  S  I  W  T  K  :  D  C  D  G  H  Y  *  T  R  K  S  K  E  I  *  G  V  Y  *  S  P  S  E  T  R  S  C  S  C  N  C  *  T  :  G  Q  G  F  *  T  T  K  D  F  :  L  *  F  K  T  *  Y  R  E  F  G  E  E  Q  C  N  *  S  E  D  I  G  *  Y  W  L  *  S  I  P  A  S  *  C  :  P  R  Y  N  T  H  I  C  *  C  W  T  W  I  S  C  G  V  Y  L  V  R  S  S  K  L  Y  I  S  K  G  G  E  T  S  Q  :  A  N  R  G  I  Y  T  S  S  C  I  N  *  G  P  D  Q  D   : G  L  *  R  D  P  *  V  A  P  D  S  T  R  T  S  L  L  R  C  I  R  L  K  L  L  K  K  R  G  F  T  A  T  R  D  P  K  S  E  E  Q  S  Q  H  N  L  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0298C03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91329" stop="91396"/>
                    <exon start="92417" stop="92515"/>
                    <exon start="93069" stop="93098"/>
                    <exon start="93286" stop="93387"/>
                    <exon start="93597" stop="93704"/>
                    <exon start="94684" stop="94738"/>
                    <exon start="94859" stop="94912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCGRVTIAKSSDFAAKLQFGQRIAMDTIKQEKVRRFEEFIDRRLKPDLVHAIAERDKVFEQQKIFSDLRRNIENLEKNNVTNLKTLVNIGSEVYLQADVPDTTRIFVDVGLGFHVEFTWSEALNYISAREEKLARQIEEYTRLVASIKAQIKMVCEGIRELLQIPPERAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 6600 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2200 bytes was the average size of a spliced alignment
$ 8264 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2754 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:26:01
-->
